SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 2 chr2L 47440 47485 chr2L 52570 52610 jockey 14 5128 4.0 8.5 6.2 1.9 5170 chr2L 47440 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52610 intron Cda5 - chr2L_14_50001 chr2L_50001 S3 3 chr2L 45977 46005 chr2L 53386 53414 jockey 6 7409 29.0 13.5 21.2 0.3 7437 chr2L 45977 intron Cda5 - chr2L 49696 intron Cda5 - chr2L 53414 intron Cda5 - chr2L_6_45001 chr2L_45001 S3 6 chr2L 686925 686944 chr2L 695990 696009 roo 4 9065 2.0 3.0 2.5 1.1 9084 chr2L 686925 intron ds - chr2L 691467 intron ds - chr2L 696009 intron ds - chr2L_4_690001 chr2L_690001 S3 8 chr2L 770446 770491 chr2L 772252 772297 Bari1 8 1802 2.0 6.0 4.0 1.6 1851 chr2L 770446 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772297 intergenic CR44614 + chr2L_8_770001 chr2L_770001 S3 15 chr2L 1220117 1220156 chr2L 1227608 1227647 blood 5 7491 3.5 2.5 3.0 1.2 7530 chr2L 1220117 intron CG42329 + chr2L 1223882 intron CG42329 + chr2L 1227647 intron CG42329 + chr2L_5_1220001 chr2L_1220001 S3 22 chr2L 1570669 1570710 chr2L 1573566 1573607 F-element 13 2897 2.0 1.5 1.8 4.6 2938 chr2L 1570669 intron haf + chr2L 1572138 intron haf + chr2L 1573607 intron haf + chr2L_13_1570001 chr2L_1570001 S3 25 chr2L 1678936 1679008 chr2L 1686444 1686498 blood 9 7501 0.0 4.0 2.0 3.0 7562 chr2L 1678936 intron chinmo + chr2L 1682717 intron chinmo + chr2L 1686498 intron chinmo + chr2L_9_1680001 chr2L_1680001 S3 26 chr2L 1711335 1711387 chr2L 1711684 1711736 mdg3 11 348 5.5 3.0 4.2 2.1 401 chr2L 1711335 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711536 3` UTR frtz - chr2L 1711736 3` UTR frtz - chr2L_11_1710001 chr2L_1710001 S3 32 chr2L 2112106 2112145 chr2L 2119777 2119825 opus 15 7679 1.5 5.0 3.2 3.6 7719 chr2L 2112106 intergenic not near genes chr2L 2115966 intergenic not near genes chr2L 2119825 intergenic not near genes chr2L_15_2115001 chr2L_2115001 S3 36 chr2L 2294046 2294050 chr2L 2299253 2299260 copia 4 5218 4.0 2.5 3.2 1.0 5214 chr2L 2294046 intergenic not near genes chr2L 2296653 intergenic not near genes chr2L 2299260 intergenic not near genes chr2L_4_2295001 chr2L_2295001 S3 37 chr2L 2294052 2294069 chr2L 2299251 2299293 copia 7 5220 3.0 2.5 2.8 1.8 5241 chr2L 2294052 intergenic not near genes chr2L 2296672 intergenic not near genes chr2L 2299293 intergenic not near genes chr2L_7_2295001 chr2L_2295001 S3 44 chr2L 2661187 2661215 chr2L 2663050 2663074 I-element 7 1858 1.5 3.5 2.5 2.0 1887 chr2L 2661187 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663074 intergenic not near genes chr2L_7_2660001 chr2L_2660001 S3 52 chr2L 3073010 3073056 chr2L 3078238 3078277 copia 10 5227 3.0 3.0 3.0 2.5 5267 chr2L 3073010 intron toc - chr2L 3075644 intron toc - chr2L 3078277 intron toc - chr2L_10_3075001 chr2L_3075001 S3 57 chr2L 3251493 3251500 chr2L 3259083 3259090 springer 4 7590 1.0 3.0 2.0 1.3 7597 chr2L 3251493 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_4_3255001 chr2L_3255001 S3 60 chr2L 3388575 3388628 chr2L 3388841 3388893 pogo 5 265 3.5 1.0 2.2 1.6 318 chr2L 3388575 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388893 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 S3 63 chr2L 3649762 3649803 chr2L 3654989 3655030 copia 8 5226 0.5 4.5 2.5 2.3 5268 chr2L 3649762 intron for - chr2L 3652396 intron for - chr2L 3655030 intron for - chr2L_8_3650001 chr2L_3650001 S3 74 chr2L 4918145 4918187 chr2L 4923243 4923285 jockey 8 5097 2.0 1.0 1.5 3.2 5140 chr2L 4918145 intron hoe1 - chr2L 4920715 intron hoe1 - chr2L 4923285 intron hoe1 - chr2L_8_4920001 chr2L_4920001 S3 88 chr2L 6363127 6363183 chr2L 6366078 6366124 Burdock 10 2950 2.5 2.5 2.5 2.9 2997 chr2L 6363127 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366124 intergenic not near genes chr2L_10_6360001 chr2L_6360001 S3 89 chr2L 6426847 6426870 chr2L 6445124 6445155 roo 4 18283 5.5 5.0 5.2 0.6 18308 chr2L 6426847 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445155 exon CG9527 - chr2L_4_6435001 chr2L_6435001 S3 103 chr2L 7343303 7343355 chr2L 7350444 7350496 roo 9 7140 2.0 1.5 1.8 3.2 7193 chr2L 7343303 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350496 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 S3 111 chr2L 7959017 7959071 chr2L 7960453 7960509 pogo 6 1436 1.0 0.5 0.8 3.3 1492 chr2L 7959017 intron Snoo - chr2L 7959763 intron Snoo - chr2L 7960509 intron Snoo - chr2L_6_7955001 chr2L_7955001 S3 112 chr2L 7977065 7977113 chr2L 7984066 7984114 297 11 7000 4.0 3.0 3.5 2.4 7049 chr2L 7977065 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984114 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 S3 121 chr2L 8452398 8452447 chr2L 8461594 8461642 roo 6 9196 1.0 2.0 1.5 2.4 9244 chr2L 8452398 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461642 intron fu12 - chr2L_6_8455001 chr2L_8455001 S3 125 chr2L 8723111 8723138 chr2L 8731506 8731540 Tirant 7 8401 1.0 4.5 2.8 1.8 8429 chr2L 8723111 intron raw - chr2L 8727326 intron raw - chr2L 8731540 intron raw - chr2L_7_8725001 chr2L_8725001 S3 130 chr2L 9000262 9000304 chr2L 9007797 9007839 roo 9 7535 5.5 1.0 3.2 2.1 7577 chr2L 9000262 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007839 intergenic not near genes chr2L_9_9000001 chr2L_9000001 S3 143 chr2L 9393489 9393524 chr2L 9396481 9396516 jockey 7 2992 1.0 2.0 1.5 2.8 3027 chr2L 9393489 intron Shawl - chr2L 9395002 intron Shawl - chr2L 9396516 intron Shawl - chr2L_7_9395001 chr2L_9395001 S3 158 chr2L 9973702 9973757 chr2L 9980846 9980901 HMS-Beagle 15 7143 4.0 0.5 2.2 4.7 7199 chr2L 9973702 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980901 intergenic not near genes chr2L_15_9975001 chr2L_9975001 S3 162 chr2L 10156234 10156265 chr2L 10164109 10164140 blood 8 7875 0.5 1.5 1.0 4.0 7906 chr2L 10156234 intron,3` UTR CG44153 -,CG4839 + chr2L 10160187 intron CG44153 - chr2L 10164140 intron CG44153 - chr2L_8_10160001 chr2L_10160001 S3 172 chr2L 10592820 10592866 chr2L 10600506 10600538 opus 7 7684 2.0 0.0 1.0 3.5 7718 chr2L 10592820 intron Trim9 + chr2L 10596679 intron Trim9 + chr2L 10600538 intron Trim9 + chr2L_7_10595001 chr2L_10595001 S3 176 chr2L 10862862 10862868 chr2L 10864461 10864485 Rt1c 5 1615 2.0 5.0 3.5 1.1 1623 chr2L 10862862 3` UTR CR43807 - chr2L 10863674 intron CR43807 - chr2L 10864485 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 S3 178 chr2L 10946929 10946972 chr2L 10956169 10956209 roo 13 9238 6.5 4.0 5.2 2.1 9280 chr2L 10946929 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956209 intron dpr2 - chr2L_13_10950001 chr2L_10950001 S3 185 chr2L 11315245 11315271 chr2L 11317674 11317677 G2 5 2422 1.5 2.0 1.8 1.8 2432 chr2L 11315245 intergenic not near genes chr2L 11316461 intergenic not near genes chr2L 11317677 intergenic not near genes chr2L_5_11315001 chr2L_11315001 S3 191 chr2L 11540579 11540612 chr2L 11547996 11548039 Tabor 5 7425 0.5 1.5 1.0 2.5 7460 chr2L 11540579 intergenic not near genes chr2L 11544309 intergenic not near genes chr2L 11548039 intergenic not near genes chr2L_5_11540001 chr2L_11540001 S3 192 chr2L 11614054 11614071 chr2L 11615554 11615560 hopper2 5 1499 2.0 1.0 1.5 2.0 1506 chr2L 11614054 intron kek2 + chr2L 11614807 intron kek2 + chr2L 11615560 intron kek2 + chr2L_5_11610001 chr2L_11610001 S3 198 chr2L 12067314 12067347 chr2L 12074381 12074424 297 6 7075 1.0 2.0 1.5 2.4 7110 chr2L 12067314 intergenic not near genes chr2L 12070869 intergenic not near genes chr2L 12074424 intergenic not near genes chr2L_6_12070001 chr2L_12070001 S3 205 chr2L 12558298 12558346 chr2L 12565452 12565499 HMS-Beagle 6 7150 0.0 1.5 0.8 3.3 7201 chr2L 12558298 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565499 intergenic not near genes chr2L_6_12560001 chr2L_12560001 S3 208 chr2L 12728904 12728945 chr2L 12729169 12729210 pogo 8 264 2.5 0.5 1.5 3.2 306 chr2L 12728904 intron MRP + chr2L 12729057 intron MRP + chr2L 12729210 exon MRP + chr2L_8_12725001 chr2L_12725001 S3 209 chr2L 12731034 12731077 chr2L 12735826 12735869 F-element 8 4788 2.5 3.5 3.0 2.0 4835 chr2L 12731034 intron MRP + chr2L 12733452 intron MRP + chr2L 12735869 intron MRP + chr2L_8_12730001 chr2L_12730001 S3 210 chr2L 12739153 12739202 chr2L 12743959 12744008 Doc 13 4806 3.5 4.5 4.0 2.6 4855 chr2L 12739153 exon MRP + chr2L 12741580 intron MRP + chr2L 12744008 exon MRP + chr2L_13_12740001 chr2L_12740001 S3 214 chr2L 12781777 12781800 chr2L 12789245 12789268 Quasimodo 4 7467 5.5 1.0 3.2 1.0 7491 chr2L 12781777 intergenic not near genes chr2L 12785522 intergenic not near genes chr2L 12789268 intergenic not near genes chr2L_4_12785001 chr2L_12785001 S3 216 chr2L 12861673 12861723 chr2L 12863165 12863215 hobo 7 1485 2.0 1.5 1.8 2.5 1542 chr2L 12861673 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863215 intergenic not near genes chr2L_7_12860001 chr2L_12860001 S3 217 chr2L 12933830 12933858 chr2L 12941322 12941350 blood 5 7488 7.0 2.5 4.8 0.9 7520 chr2L 12933830 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_5_12935001 chr2L_12935001 S3 224 chr2L 13405626 13405679 chr2L 13410446 13410501 Doc 4 4822 3.0 2.0 2.5 1.1 4875 chr2L 13405626 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410501 intron CG7110 + chr2L_4_13405001 chr2L_13405001 S3 225 chr2L 13481433 13481465 chr2L 13482065 13482097 jockey 7 632 4.0 3.0 3.5 1.6 664 chr2L 13481433 intron CG42784 + chr2L 13481765 intron CG42784 + chr2L 13482097 intron CG42784 + chr2L_7_13480001 chr2L_13480001 S3 228 chr2L 13560377 13560411 chr2L 13565223 13565257 F-element 5 4846 1.0 2.0 1.5 2.0 4880 chr2L 13560377 intron kuz + chr2L 13562817 intron kuz + chr2L 13565257 intron kuz + chr2L_5_13560001 chr2L_13560001 S3 231 chr2L 13761780 13761826 chr2L 13762916 13762962 Doc 6 1134 2.5 0.0 1.2 2.7 1182 chr2L 13761780 intron TM9SF4 + chr2L 13762371 intron TM9SF4 + chr2L 13762962 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 S3 232 chr2L 13853075 13853108 chr2L 13862250 13862283 roo 5 9174 3.0 3.0 3.0 1.2 9208 chr2L 13853075 intron CenG1A + chr2L 13857679 intron CenG1A + chr2L 13862283 intron CenG1A + chr2L_5_13855001 chr2L_13855001 S3 247 chr2L 14642550 14642595 chr2L 14651738 14651780 roo 7 9186 3.5 2.5 3.0 1.8 9230 chr2L 14642550 intron osp - chr2L 14647165 intron osp - chr2L 14651780 intron osp - chr2L_7_14645001 chr2L_14645001 S3 253 chr2L 14803861 14803900 chr2L 14809089 14809128 copia 7 5228 2.5 3.0 2.8 1.8 5267 chr2L 14803861 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809128 intergenic not near genes chr2L_7_14805001 chr2L_14805001 S3 258 chr2L 14889943 14889982 chr2L 14890378 14890432 jockey 8 448 3.0 0.5 1.8 2.9 489 chr2L 14889943 intergenic not near genes chr2L 14890188 intergenic not near genes chr2L 14890432 intergenic not near genes chr2L_8_14890001 chr2L_14890001 S3 267 chr2L 15446029 15446054 chr2L 15453523 15453548 blood 5 7494 2.0 1.0 1.5 2.0 7519 chr2L 15446029 intergenic not near genes chr2L 15449788 intergenic not near genes chr2L 15453548 intergenic not near genes chr2L_5_15445001 chr2L_15445001 S3 274 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 10.0 6.5 8.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 S3 275 chr2L 16141142 16141186 chr2L 16146374 16146417 copia 5 5232 3.0 1.5 2.2 1.6 5275 chr2L 16141142 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146417 intergenic not near genes chr2L_5_16140001 chr2L_16140001 S3 276 chr2L 16153714 16153767 chr2L 16160793 16160846 297 16 7079 4.0 3.5 3.8 3.3 7132 chr2L 16153714 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160846 intergenic not near genes chr2L_16_16155001 chr2L_16155001 S3 279 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 10.0 6.5 8.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 S3 280 chr2L 16280236 16280282 chr2L 16281432 16281478 1360 10 1193 4.0 3.5 3.8 2.1 1242 chr2L 16280236 intron crp - chr2L 16280857 intron crp - chr2L 16281478 intron crp - chr2L_10_16280001 chr2L_16280001 S3 285 chr2L 16511960 16511992 chr2L 16519099 16519121 HMS-Beagle 5 7134 1.0 1.5 1.2 2.3 7161 chr2L 16511960 intron CG5953 - chr2L 16515540 intron CG5953 - chr2L 16519121 intron CG5953 - chr2L_5_16515001 chr2L_16515001 S3 291 chr2L 16958083 16958122 chr2L 16962896 16962935 Doc 5 4813 2.0 2.0 2.0 1.7 4852 chr2L 16958083 intergenic not near genes chr2L 16960509 intergenic not near genes chr2L 16962935 intergenic not near genes chr2L_5_16960001 chr2L_16960001 S3 299 chr2L 17167549 17167585 chr2L 17167815 17167851 pogo 4 266 1.0 2.0 1.5 1.6 302 chr2L 17167549 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167851 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 S3 300 chr2L 17273176 17273208 chr2L 17277984 17278016 F-element 5 4808 2.0 1.5 1.8 1.8 4840 chr2L 17273176 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17278016 intergenic not near genes chr2L_5_17275001 chr2L_17275001 S3 308 chr2L 17819900 17819946 chr2L 17825128 17825174 copia 7 5227 4.0 1.5 2.8 1.8 5274 chr2L 17819900 intron CadN2 - chr2L 17822537 intron CadN2 - chr2L 17825174 intron CadN2 - chr2L_7_17820001 chr2L_17820001 S3 312 chr2L 17911942 17911990 chr2L 17914153 17914195 pogo 8 2210 0.5 2.5 1.5 3.2 2253 chr2L 17911942 intergenic not near genes chr2L 17913068 intergenic not near genes chr2L 17914195 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 S3 315 chr2L 17951928 17951961 chr2L 17953420 17953453 hobo 5 1492 2.0 2.0 2.0 1.7 1525 chr2L 17951928 intergenic CR44398 -,CR44397 - chr2L 17952690 intergenic not near genes chr2L 17953453 intergenic not near genes chr2L_5_17950001 chr2L_17950001 S3 318 chr2L 18408004 18408041 chr2L 18412813 18412849 Doc 5 4809 2.5 1.0 1.8 1.8 4845 chr2L 18408004 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412849 intergenic not near genes chr2L_5_18410001 chr2L_18410001 S3 335 chr2L 19620074 19620124 chr2L 19621088 19621138 jockey 8 1014 4.5 1.5 3.0 2.0 1064 chr2L 19620074 intron Lar + chr2L 19620606 intron Lar + chr2L 19621138 intron Lar + chr2L_8_19620001 chr2L_19620001 S3 336 chr2L 19652553 19652601 chr2L 19674014 19674062 opus 7 21458 2.5 1.5 2.0 2.3 21509 chr2L 19652553 intron Lar + chr2L 19663308 intron Lar + chr2L 19674062 intron Lar + chr2L_7_19660001 chr2L_19660001 S3 338 chr2L 19703520 19703560 chr2L 19712681 19712706 roo 6 9158 2.5 2.5 2.5 1.7 9186 chr2L 19703520 intron Lar + chr2L 19708113 intron Lar + chr2L 19712706 intron Lar + chr2L_6_19705001 chr2L_19705001 S3 339 chr2L 19737352 19737388 chr2L 19740836 19740845 1360 8 3485 2.0 1.0 1.5 3.2 3493 chr2L 19737352 intergenic Nf-YB + chr2L 19739098 intergenic not near genes chr2L 19740845 intergenic not near genes chr2L_8_19735001 chr2L_19735001 S3 340 chr2L 19762782 19762838 chr2L 19763049 19763105 pogo 9 267 1.0 3.5 2.2 2.8 323 chr2L 19762782 exon fbp - chr2L 19762944 intron fbp - chr2L 19763105 intron fbp - chr2L_9_19760001 chr2L_19760001 S3 353 chr2L 20272096 20272141 chr2L 20282832 20282877 copia 6 10736 2.5 2.5 2.5 1.7 10781 chr2L 20272096 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282877 intergenic not near genes chr2L_6_20275001 chr2L_20275001 S3 360 chr2L 20568640 20568653 chr2L 20569055 20569062 X-element 5 414 4.5 3.5 4.0 1.0 422 chr2L 20568640 intron CR45347 + chr2L 20568851 intron CR45347 + chr2L 20569062 intron CR45347 + chr2L_5_20565001 chr2L_20565001 S3 366 chr2L 20835796 20835836 chr2L 20836533 20836577 Quasimodo 8 739 3.5 2.0 2.8 2.1 781 chr2L 20835796 5` UTR Oseg5 - chr2L 20836186 intergenic Oseg5 -,Spn38F - chr2L 20836577 intergenic Spn38F - chr2L_8_20835001 chr2L_20835001 S3 371 chr2L 20901429 20901474 chr2L 20902618 20902663 1360 5 1189 6.0 0.5 3.2 1.2 1234 chr2L 20901429 intron,intron CG43739 -,sky - chr2L 20902046 intron,intron CG43739 -,sky - chr2L 20902663 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 S3 376 chr2L 20976630 20976659 chr2L 20981470 20981499 X-element 6 4839 1.5 1.0 1.2 2.7 4869 chr2L 20976630 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981499 intron CG42238 - chr2L_6_20975001 chr2L_20975001 S3 378 chr2L 21020255 21020303 chr2L 21023955 21024005 NOF 5 3701 2.5 2.0 2.2 1.6 3750 chr2L 21020255 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21024005 intron CG42238 - chr2L_5_21020001 chr2L_21020001 S3 379 chr2L 21041117 21041164 chr2L 21049403 21049450 Tirant 7 8286 0.0 2.5 1.2 3.2 8333 chr2L 21041117 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049450 intron CG42238 - chr2L_7_21045001 chr2L_21045001 S3 385 chr2L 21347529 21347557 chr2L 21355026 21355054 blood 4 7497 5.0 1.5 3.2 1.0 7525 chr2L 21347529 intron Tsp39D + chr2L 21351292 intron Tsp39D + chr2L 21355054 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 S3 387 chr2L 21691805 21691834 chr2L 21698300 21698329 Burdock 4 6494 2.5 0.0 1.2 1.8 6524 chr2L 21691805 intron CG31619 + chr2L 21695067 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_4_21695001 chr2L_21695001 S3 394 chr2L 21981667 21981712 chr2L 21990857 21990885 roo 4 9186 2.0 0.5 1.2 1.8 9218 chr2L 21981667 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990885 exon CG2528 - chr2L_4_21985001 chr2L_21985001 S3 402 chr2L 22258597 22258626 chr2L 22260746 22260775 G6 8 2148 3.5 4.5 4.0 1.6 2178 chr2L 22258597 intergenic Tif-IA + chr2L 22259686 intergenic not near genes chr2L 22260775 intergenic not near genes chr2L_8_22255001 chr2L_22255001 S3 404 chr2L 22581950 22581999 chr2L 22583764 22583813 S-element 6 1806 1.5 1.5 1.5 2.4 1863 chr2L 22581950 intron CG17494 + chr2L 22582882 intron CG17494 + chr2L 22583813 intron CG17494 + chr2L_6_22580001 chr2L_22580001 S3 406 chr2L 22776403 22776450 chr2L 22778217 22778264 S-element 5 1814 2.5 1.0 1.8 1.8 1861 chr2L 22776403 intergenic not near genes chr2L 22777334 intergenic not near genes chr2L 22778264 intergenic not near genes chr2L_5_22775001 chr2L_22775001 S3 407 chr2R 1516588 1516592 chr2R 1521341 1521345 1731 5 4753 17.0 11.0 14.0 0.3 4757 chr2R 1516588 exon Maf1 - chr2R 1518966 intron Maf1 - chr2R 1521345 5` UTR Maf1 - chr2R_5_1515001 chr2R_1515001 S3 408 chr2R 2498970 2499009 chr2R 2508142 2508181 roo 4 9172 0.0 1.0 0.5 2.7 9211 chr2R 2498970 intron MFS17 - chr2R 2503576 intron MFS17 - chr2R 2508181 intron MFS17 - chr2R_4_2500001 chr2R_2500001 S3 413 chr2R 4622927 4622982 chr2R 4624111 4624166 1360 8 1180 3.5 2.0 2.8 2.1 1239 chr2R 4622927 intergenic CR44101 - chr2R 4623546 intergenic not near genes chr2R 4624166 intergenic not near genes chr2R_8_4620001 chr2R_4620001 S3 421 chr2R 5417978 5418023 chr2R 5420635 5420680 Burdock 5 2657 1.5 4.5 3.0 1.2 2702 chr2R 5417978 intron laccase2 + chr2R 5419329 intron laccase2 + chr2R 5420680 intron laccase2 + chr2R_5_5415001 chr2R_5415001 S3 433 chr2R 5869253 5869291 chr2R 5874354 5874390 flea 4 5099 2.0 1.5 1.8 1.4 5137 chr2R 5869253 intergenic not near genes chr2R 5871822 intergenic not near genes chr2R 5874390 intergenic not near genes chr2R_4_5870001 chr2R_5870001 S3 435 chr2R 5902156 5902190 chr2R 5909714 5909774 17.6 4 7578 2.0 0.5 1.2 1.8 7618 chr2R 5902156 intron CG43366 + chr2R 5905965 intron CG43366 + chr2R 5909774 intron CG43366 + chr2R_4_5905001 chr2R_5905001 S3 442 chr2R 6494523 6494552 chr2R 6499310 6499336 F-element 7 4787 2.0 1.5 1.8 2.5 4813 chr2R 6494523 intergenic not near genes chr2R 6496930 intergenic not near genes chr2R 6499336 intergenic not near genes chr2R_7_6495001 chr2R_6495001 S3 455 chr2R 7209849 7209870 chr2R 7217622 7217643 roo 4 7773 1.0 2.0 1.5 1.6 7794 chr2R 7209849 intron pk + chr2R 7213746 intron pk + chr2R 7217643 intron pk + chr2R_4_7210001 chr2R_7210001 S3 456 chr2R 7235804 7235838 chr2R 7240921 7240955 jockey 7 5112 1.5 0.5 1.0 3.5 5151 chr2R 7235804 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240955 intergenic not near genes chr2R_7_7235001 chr2R_7235001 S3 457 chr2R 7262181 7262206 chr2R 7269267 7269292 297 6 7086 2.5 3.5 3.0 1.5 7111 chr2R 7262181 intergenic not near genes chr2R 7265736 intergenic not near genes chr2R 7269292 intergenic not near genes chr2R_6_7265001 chr2R_7265001 S3 460 chr2R 7434873 7434901 chr2R 7439199 7439224 Juan 5 4325 6.0 7.0 6.5 0.7 4351 chr2R 7434873 intergenic so + chr2R 7437048 intergenic not near genes chr2R 7439224 intergenic not near genes chr2R_5_7435001 chr2R_7435001 S3 463 chr2R 7608386 7608413 chr2R 7613614 7613631 I-element 4 5226 7.0 0.0 3.5 0.9 5245 chr2R 7608386 intron CG1358 - chr2R 7611008 intron CG1358 - chr2R 7613631 intron CG1358 - chr2R_4_7610001 chr2R_7610001 S3 473 chr2R 7815654 7815693 chr2R 7822148 7822182 Burdock 6 6492 3.5 1.5 2.5 1.7 6528 chr2R 7815654 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822182 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 S3 474 chr2R 7869194 7869199 chr2R 7873993 7874010 Doc 4 4808 3.0 5.0 4.0 0.8 4816 chr2R 7869194 intron Dgk - chr2R 7871602 intron Dgk - chr2R 7874010 intron Dgk - chr2R_4_7870001 chr2R_7870001 S3 485 chr2R 8398210 8398240 chr2R 8403016 8403046 Doc 6 4806 7.5 7.0 7.2 0.7 4836 chr2R 8398210 intron CG2121 - chr2R 8400628 intron CG2121 - chr2R 8403046 intron CG2121 - chr2R_6_8400001 chr2R_8400001 S3 490 chr2R 8722776 8722785 chr2R 8723027 8723044 pogo 4 256 2.5 2.5 2.5 1.1 268 chr2R 8722776 intron CG14767 - chr2R 8722910 intron CG14767 - chr2R 8723044 intron CG14767 - chr2R_4_8720001 chr2R_8720001 S3 497 chr2R 9151286 9151326 chr2R 9157774 9157821 Burdock 8 6493 4.5 4.5 4.5 1.5 6535 chr2R 9151286 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157821 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 S3 498 chr2R 9212672 9212682 chr2R 9213183 9213193 roo 4 511 7.5 6.5 7.0 0.5 521 chr2R 9212672 intergenic CR45309 + chr2R 9212932 intergenic CR45309 + chr2R 9213193 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 S3 499 chr2R 9212683 9212719 chr2R 9213179 9213229 roo 11 508 3.0 6.5 4.8 1.9 546 chr2R 9212683 intergenic CR45309 + chr2R 9212956 intergenic CR45309 + chr2R 9213229 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 S3 509 chr2R 9726593 9726640 chr2R 9734169 9734216 17.6 9 7574 3.5 3.0 3.2 2.1 7623 chr2R 9726593 intron sqa - chr2R 9730404 intron sqa - chr2R 9734216 intron sqa - chr2R_9_9730001 chr2R_9730001 S3 510 chr2R 9871023 9871068 chr2R 9871534 9871579 roo 9 510 0.0 4.5 2.2 2.8 556 chr2R 9871023 intron cbx - chr2R 9871301 intron cbx - chr2R 9871579 intron,5` UTR cbx -,CG18446 + chr2R_9_9870001 chr2R_9870001 S3 511 chr2R 9945437 9945460 chr2R 9945632 9945665 BS 6 211 2.0 2.0 2.0 2.0 228 chr2R 9945437 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_6_9945001 chr2R_9945001 S3 514 chr2R 10005833 10005854 chr2R 10007018 10007024 1360 5 1177 8.0 4.5 6.2 0.7 1191 chr2R 10005833 intron Pka-R2 - chr2R 10006428 intron Pka-R2 - chr2R 10007024 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 S3 515 chr2R 10005862 10005876 chr2R 10007017 10007066 1360 7 1169 5.0 4.5 4.8 1.2 1204 chr2R 10005862 intron Pka-R2 - chr2R 10006464 intron Pka-R2 - chr2R 10007066 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 S3 524 chr2R 10176860 10176907 chr2R 10186055 10186102 roo 11 9194 3.5 2.0 2.8 2.9 9242 chr2R 10176860 intron KCNQ - chr2R 10181481 intron KCNQ - chr2R 10186102 intron KCNQ - chr2R_11_10180001 chr2R_10180001 S3 536 chr2R 10622337 10622352 chr2R 10637116 10637135 mdg1 4 14785 5.0 3.5 4.2 0.8 14798 chr2R 10622337 intron CG11883 + chr2R 10629736 intron CG11883 + chr2R 10637135 intron CG11883 + chr2R_4_10625001 chr2R_10625001 S3 544 chr2R 10948028 10948062 chr2R 10955579 10955621 17.6 9 7568 0.0 3.5 1.8 3.2 7593 chr2R 10948028 intergenic not near genes chr2R 10951824 intergenic not near genes chr2R 10955621 intergenic not near genes chr2R_9_10950001 chr2R_10950001 S3 546 chr2R 11009801 11009848 chr2R 11018999 11019025 roo 6 9195 2.0 3.0 2.5 1.7 9224 chr2R 11009801 intron luna - chr2R 11014413 intron luna - chr2R 11019025 intron luna - chr2R_6_11010001 chr2R_11010001 S3 547 chr2R 11134091 11134131 chr2R 11134357 11134397 pogo 9 265 1.5 4.5 3.0 2.2 306 chr2R 11134091 intergenic not near genes chr2R 11134244 intergenic not near genes chr2R 11134397 intergenic not near genes chr2R_9_11130001 chr2R_11130001 S3 549 chr2R 11207801 11207846 chr2R 11208018 11208063 BS 11 216 3.0 6.5 4.8 1.9 262 chr2R 11207801 intron shn + chr2R 11207932 intron shn + chr2R 11208063 intron shn + chr2R_11_11205001 chr2R_11205001 S3 556 chr2R 11415521 11415547 chr2R 11418665 11418721 opus 9 3168 1.5 3.5 2.5 2.6 3200 chr2R 11415521 intron Drip - chr2R 11417121 intron Drip - chr2R 11418721 intron Drip - chr2R_9_11415001 chr2R_11415001 S3 557 chr2R 11472628 11472675 chr2R 11473845 11473897 pogo 15 1221 4.5 1.0 2.8 3.9 1269 chr2R 11472628 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473897 intergenic not near genes chr2R_15_11470001 chr2R_11470001 S3 559 chr2R 12707497 12707545 chr2R 12715888 12715936 roo 13 8390 3.0 1.5 2.2 4.1 8439 chr2R 12707497 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715936 intron CG42663 + chr2R_13_12710001 chr2R_12710001 S3 560 chr2R 12789269 12789324 chr2R 12797656 12797712 roo 8 8386 2.5 3.0 2.8 2.1 8443 chr2R 12789269 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797712 intron,3` UTR sca +,CR45137 - chr2R_8_12790001 chr2R_12790001 S3 563 chr2R 13136823 13136861 chr2R 13141646 13141684 Doc 9 4823 6.0 5.0 5.5 1.4 4861 chr2R 13136823 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141684 intron Cap-G + chr2R_9_13135001 chr2R_13135001 S3 571 chr2R 14467290 14467324 chr2R 14476473 14476507 roo 5 9183 1.5 3.0 2.2 1.6 9217 chr2R 14467290 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476507 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 S3 572 chr2R 14497371 14497402 chr2R 14498562 14498593 1360 4 1191 4.0 3.5 3.8 0.8 1222 chr2R 14497371 3` UTR Cpsf160 - chr2R 14497982 intron Cpsf160 - chr2R 14498593 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 S3 581 chr2R 15004714 15004750 chr2R 15005068 15005104 jockey 6 354 3.5 2.5 3.0 1.5 390 chr2R 15004714 intergenic not near genes chr2R 15004909 intergenic not near genes chr2R 15005104 intergenic not near genes chr2R_6_15000001 chr2R_15000001 S3 582 chr2R 15015436 15015488 chr2R 15022885 15022931 mdg1 4 7446 0.0 1.0 0.5 2.7 7495 chr2R 15015436 intron hbs + chr2R 15019184 intron hbs + chr2R 15022931 intron hbs + chr2R_4_15015001 chr2R_15015001 S3 584 chr2R 15084956 15084995 chr2R 15092030 15092069 297 8 7072 5.0 0.5 2.8 2.1 7113 chr2R 15084956 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092069 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 S3 586 chr2R 15119299 15119342 chr2R 15127805 15127846 Tirant 10 8502 6.0 4.0 5.0 1.7 8547 chr2R 15119299 intron chn + chr2R 15123572 intron chn + chr2R 15127846 intron chn + chr2R_10_15120001 chr2R_15120001 S3 617 chr2R 17147231 17147263 chr2R 17152286 17152319 jockey 12 5056 1.5 4.5 3.0 3.0 5088 chr2R 17147231 intergenic not near genes chr2R 17149775 intergenic not near genes chr2R 17152319 intergenic not near genes chr2R_12_17145001 chr2R_17145001 S3 627 chr2R 17784007 17784035 chr2R 17784271 17784299 pogo 8 264 4.5 5.0 4.8 1.4 292 chr2R 17784007 intergenic mir-31a - chr2R 17784153 intergenic mir-31a - chr2R 17784299 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 S3 632 chr2R 18358344 18358355 chr2R 18372597 18372604 roo 4 14251 3.0 1.5 2.2 1.2 14260 chr2R 18358344 intergenic not near genes chr2R 18365474 intergenic not near genes chr2R 18372604 intergenic not near genes chr2R_4_18365001 chr2R_18365001 S3 639 chr2R 18575789 18575827 chr2R 18581991 18582039 3S18 8 6198 2.5 1.5 2.0 2.7 6250 chr2R 18575789 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582039 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 S3 640 chr2R 18590871 18590896 chr2R 18600048 18600072 roo 9 9176 0.0 4.0 2.0 3.0 9201 chr2R 18590871 intron GEFmeso - chr2R 18595472 intron GEFmeso - chr2R 18600072 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 S3 655 chr2R 19776578 19776620 chr2R 19779926 19779968 jockey 5 3347 2.5 0.5 1.5 2.0 3390 chr2R 19776578 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779968 intergenic not near genes chr2R_5_19775001 chr2R_19775001 S3 656 chr2R 19914823 19914870 chr2R 19922260 19922307 mdg1 8 7437 4.0 2.5 3.2 1.9 7484 chr2R 19914823 intergenic not near genes chr2R 19918565 intergenic not near genes chr2R 19922307 intergenic not near genes chr2R_8_19915001 chr2R_19915001 S3 657 chr2R 19957424 19957463 chr2R 19962646 19962690 copia 6 5225 1.0 3.0 2.0 2.0 5266 chr2R 19957424 intergenic CG44623 + chr2R 19960057 intergenic not near genes chr2R 19962690 intergenic not near genes chr2R_6_19960001 chr2R_19960001 S3 658 chr2R 20069236 20069271 chr2R 20071890 20071926 opus 7 2653 1.5 5.5 3.5 1.6 2690 chr2R 20069236 intergenic not near genes chr2R 20070581 intergenic not near genes chr2R 20071926 intergenic not near genes chr2R_7_20070001 chr2R_20070001 S3 665 chr2R 20739417 20739472 chr2R 20744210 20744265 F-element 6 4790 3.0 1.5 2.2 1.9 4848 chr2R 20739417 intron dpr + chr2R 20741841 intron dpr + chr2R 20744265 intron dpr + chr2R_6_20740001 chr2R_20740001 S3 666 chr2R 20783293 20783331 chr2R 20788090 20788128 F-element 5 4797 0.5 0.5 0.5 3.3 4835 chr2R 20783293 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788128 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 S3 683 chr2R 21809510 21809545 chr2R 21817775 21817810 roo 7 8265 3.5 4.0 3.8 1.5 8300 chr2R 21809510 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817810 intergenic not near genes chr2R_7_21810001 chr2R_21810001 S3 690 chr2R 22349669 22349707 chr2R 22351478 22351516 jockey 9 1807 4.0 0.5 2.2 2.8 1847 chr2R 22349669 intron Liprin-gamma - chr2R 22350592 intron Liprin-gamma - chr2R 22351516 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 S3 698 chr2R 22580437 22580441 chr2R 22586602 22586616 diver 4 6171 0.0 1.0 0.5 2.7 6179 chr2R 22580437 intron dnr1 - chr2R 22583526 intron dnr1 - chr2R 22586616 intron dnr1 - chr2R_4_22580001 chr2R_22580001 S3 723 chr2R 23529552 23529596 chr2R 23537153 23537197 412 6 7592 2.0 5.5 3.8 1.2 7645 chr2R 23529552 intron bw - chr2R 23533374 intron bw - chr2R 23537197 exon bw - chr2R_6_23530001 chr2R_23530001 S3 729 chr2R 23914293 23914328 chr2R 23921926 23921977 412 12 7646 3.0 3.0 3.0 3.0 7684 chr2R 23914293 exon kcc + chr2R 23918135 intron kcc + chr2R 23921977 exon kcc + chr2R_12_23915001 chr2R_23915001 S3 734 chr2R 24147046 24147075 chr2R 24154649 24154673 412 9 7599 6.0 5.0 5.5 1.4 7627 chr2R 24147046 intron Dat + chr2R 24150860 intron Dat + chr2R 24154673 intron Dat + chr2R_9_24150001 chr2R_24150001 S3 740 chr2R 24353403 24353442 chr2R 24361790 24361829 roo 8 8386 3.0 1.0 2.0 2.7 8426 chr2R 24353403 intron,intron bs +,CR44811 - chr2R 24357616 intron,intron bs +,CR44811 - chr2R 24361829 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 S3 741 chr2R 24647580 24647617 chr2R 24655162 24655199 412 4 7580 2.5 3.5 3.0 1.0 7619 chr2R 24647580 intergenic not near genes chr2R 24651390 intergenic not near genes chr2R 24655199 intergenic not near genes chr2R_4_24650001 chr2R_24650001 S3 742 chr2R 24727874 24727905 chr2R 24735401 24735438 mdg1 8 7528 2.5 3.5 3.0 2.0 7564 chr2R 24727874 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735438 intron Mid1 - chr2R_8_24730001 chr2R_24730001 S3 743 chr2R 24763602 24763639 chr2R 24765597 24765635 G2 14 1999 3.0 5.5 4.2 2.7 2033 chr2R 24763602 exon CG3894 + chr2R 24764618 intron CG3894 + chr2R 24765635 exon CG3894 + chr2R_14_24760001 chr2R_24760001 S3 748 chr2R 24919070 24919119 chr2R 24919349 24919398 1360 7 279 1.5 2.0 1.8 2.5 328 chr2R 24919070 3` UTR NaCP60E + chr2R 24919234 3` UTR NaCP60E + chr2R 24919398 3` UTR NaCP60E + chr2R_7_24915001 chr2R_24915001 S3 756 chr2R 25141640 25141678 chr2R 25159355 25159393 roo 11 17715 0.5 1.5 1.0 5.5 17753 chr2R 25141640 intergenic not near genes chr2R 25150516 intergenic not near genes chr2R 25159393 intergenic not near genes chr2R_11_25150001 chr2R_25150001 S3 758 chr3L 110212 110242 chr3L 119383 119434 roo 6 9188 2.0 4.0 3.0 1.5 9222 chr3L 110212 intergenic not near genes chr3L 114823 intergenic not near genes chr3L 119434 intergenic not near genes chr3L_6_110001 chr3L_110001 S3 762 chr3L 402663 402717 chr3L 409741 409795 297 8 7077 3.5 2.0 2.8 2.1 7132 chr3L 402663 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409795 intergenic not near genes chr3L_8_405001 chr3L_405001 S3 770 chr3L 857994 858025 chr3L 866488 866521 Tirant 10 8495 2.5 5.5 4.0 2.0 8527 chr3L 857994 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866521 5` UTR CG12502 + chr3L_10_860001 chr3L_860001 S3 778 chr3L 1154117 1154161 chr3L 1163286 1163336 roo 4 9173 1.5 1.5 1.5 1.6 9219 chr3L 1154117 intron bab2 - chr3L 1158726 intron bab2 - chr3L 1163336 intron bab2 - chr3L_4_1155001 chr3L_1155001 S3 779 chr3L 1219580 1219606 chr3L 1227338 1227352 412 7 7756 2.0 3.0 2.5 2.0 7772 chr3L 1219580 intron mwh + chr3L 1223466 intron mwh + chr3L 1227352 intron mwh + chr3L_7_1220001 chr3L_1220001 S3 780 chr3L 1219611 1219619 chr3L 1227328 1227377 412 6 7747 0.5 2.5 1.5 2.4 7766 chr3L 1219611 intron mwh + chr3L 1223494 intron mwh + chr3L 1227377 intron mwh + chr3L_6_1220001 chr3L_1220001 S3 785 chr3L 1485731 1485738 chr3L 1486908 1486930 1360 4 1186 5.5 7.5 6.5 0.5 1199 chr3L 1485731 intron stet - chr3L 1486330 intron stet - chr3L 1486930 intron stet - chr3L_4_1485001 chr3L_1485001 S3 786 chr3L 1505992 1506032 chr3L 1513614 1513644 17.6 8 7620 3.0 2.0 2.5 2.3 7652 chr3L 1505992 intron,intron Psa +,cue - chr3L 1509818 intron,intron Psa +,cue - chr3L 1513644 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 S3 788 chr3L 1740833 1740876 chr3L 1741101 1741139 pogo 4 266 3.5 1.0 2.2 1.2 306 chr3L 1740833 intron Gk + chr3L 1740986 intron Gk + chr3L 1741139 intron Gk + chr3L_4_1740001 chr3L_1740001 S3 796 chr3L 2447482 2447533 chr3L 2456663 2456714 roo 8 9179 0.5 3.5 2.0 2.7 9232 chr3L 2447482 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456714 intron CG45186 + chr3L_8_2450001 chr3L_2450001 S3 803 chr3L 2927819 2927868 chr3L 2936121 2936170 Tirant 4 8302 1.5 0.5 1.0 2.0 8351 chr3L 2927819 intron Shab + chr3L 2931994 intron Shab + chr3L 2936170 intron Shab + chr3L_4_2930001 chr3L_2930001 S3 806 chr3L 3040305 3040330 chr3L 3042114 3042114 S-element 4 1805 4.0 0.0 2.0 1.3 1809 chr3L 3040305 3` UTR CG2162 + chr3L 3041210 intergenic not near genes chr3L 3042114 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 S3 807 chr3L 3051725 3051744 chr3L 3051992 3052005 pogo 4 266 8.5 3.5 6.0 0.6 280 chr3L 3051725 3` UTR CG32485 + chr3L 3051865 intergenic CG32485 + chr3L 3052005 intergenic CG32485 + chr3L_4_3050001 chr3L_3050001 S3 808 chr3L 3061264 3061311 chr3L 3069867 3069919 Tirant 7 8604 3.5 5.0 4.2 1.3 8655 chr3L 3061264 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069919 intron CG32486 - chr3L_7_3065001 chr3L_3065001 S3 811 chr3L 3281423 3281471 chr3L 3281931 3281991 Doc 9 514 0.0 5.0 2.5 2.6 568 chr3L 3281423 intron CG12017 + chr3L 3281707 intron CG12017 + chr3L 3281991 intron CG12017 + chr3L_9_3280001 chr3L_3280001 S3 816 chr3L 3475053 3475095 chr3L 3475520 3475552 jockey 4 464 4.0 0.5 2.2 1.2 499 chr3L 3475053 intron CG42324 + chr3L 3475302 intron CG42324 + chr3L 3475552 intron CG42324 + chr3L_4_3475001 chr3L_3475001 S3 819 chr3L 3601274 3601330 chr3L 3606610 3606666 copia 5 5335 1.5 1.0 1.2 2.3 5392 chr3L 3601274 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606666 intron Eip63E + chr3L_5_3600001 chr3L_3600001 S3 823 chr3L 3833721 3833768 chr3L 3833987 3834034 pogo 4 266 0.5 0.5 0.5 2.7 313 chr3L 3833721 intron enc + chr3L 3833878 intron enc + chr3L 3834034 intron enc + chr3L_4_3830001 chr3L_3830001 S3 835 chr3L 5034136 5034180 chr3L 5043308 5043357 roo 5 9175 2.0 0.5 1.2 2.3 9221 chr3L 5034136 intron Con - chr3L 5038746 intron Con - chr3L 5043357 intron Con - chr3L_5_5035001 chr3L_5035001 S3 848 chr3L 5910007 5910058 chr3L 5910273 5910324 pogo 6 266 0.0 0.5 0.2 5.0 317 chr3L 5910007 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910324 intron CG13288 + chr3L_6_5910001 chr3L_5910001 S3 849 chr3L 5926325 5926344 chr3L 5926540 5926559 BS 8 215 2.0 9.0 5.5 1.2 234 chr3L 5926325 intron Vap-33B + chr3L 5926442 intron Vap-33B + chr3L 5926559 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 S3 852 chr3L 6001660 6001711 chr3L 6004385 6004436 jockey 4 2717 2.0 0.5 1.2 1.8 2776 chr3L 6001660 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004436 intron PVRAP + chr3L_4_6000001 chr3L_6000001 S3 857 chr3L 6220900 6220933 chr3L 6230077 6230107 roo 4 9176 2.0 2.0 2.0 1.3 9207 chr3L 6220900 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230107 intergenic not near genes chr3L_4_6225001 chr3L_6225001 S3 861 chr3L 6334987 6335023 chr3L 6335483 6335503 297 8 491 4.0 1.5 2.8 2.1 516 chr3L 6334987 intron CG13300 - chr3L 6335245 intron CG13300 - chr3L 6335503 intron CG13300 - chr3L_8_6335001 chr3L_6335001 S3 863 chr3L 6405638 6405676 chr3L 6432125 6432164 roo 7 26489 1.0 1.5 1.2 3.2 26526 chr3L 6405638 intron CG42747 + chr3L 6418901 intron CG42747 + chr3L 6432164 intron CG42747 + chr3L_7_6415001 chr3L_6415001 S3 867 chr3L 6855917 6855951 chr3L 6860727 6860761 Doc 7 4808 1.0 4.5 2.8 1.8 4844 chr3L 6855917 intergenic not near genes chr3L 6858339 intergenic not near genes chr3L 6860761 intergenic not near genes chr3L_7_6855001 chr3L_6855001 S3 868 chr3L 6887516 6887534 chr3L 6895033 6895051 roo 6 7516 2.5 4.0 3.2 1.4 7535 chr3L 6887516 intergenic not near genes chr3L 6891284 intergenic not near genes chr3L 6895051 intergenic not near genes chr3L_6_6890001 chr3L_6890001 S3 881 chr3L 7793693 7793737 chr3L 7800770 7800814 297 8 7077 3.5 3.0 3.2 1.9 7121 chr3L 7793693 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800814 intron CG32369 - chr3L_8_7795001 chr3L_7795001 S3 885 chr3L 7886491 7886547 chr3L 7889034 7889090 Stalker4 9 2543 1.0 2.0 1.5 3.6 2599 chr3L 7886491 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889090 intron CG32365 + chr3L_9_7885001 chr3L_7885001 S3 886 chr3L 7916823 7916858 chr3L 7926019 7926054 roo 4 9193 1.0 1.0 1.0 2.0 9231 chr3L 7916823 3` UTR syd - chr3L 7921438 intron syd - chr3L 7926054 3` UTR syd - chr3L_4_7920001 chr3L_7920001 S3 892 chr3L 8233567 8233582 chr3L 8238854 8238869 Rt1a 4 5287 3.0 5.5 4.2 0.8 5302 chr3L 8233567 intron CG7213 - chr3L 8236218 intron CG7213 - chr3L 8238869 intron,intron CG7213 -,Dscam4 + chr3L_4_8235001 chr3L_8235001 S3 897 chr3L 8498301 8498325 chr3L 8505793 8505807 blood 4 7488 0.0 3.0 1.5 1.6 7506 chr3L 8498301 intron CG43163 - chr3L 8502054 intron CG43163 - chr3L 8505807 intron CG43163 - chr3L_4_8500001 chr3L_8500001 S3 898 chr3L 8791256 8791283 chr3L 8796699 8796726 I-element 5 5443 7.0 5.0 6.0 0.7 5470 chr3L 8791256 exon Fhos + chr3L 8793991 intron Fhos + chr3L 8796726 intron Fhos + chr3L_5_8790001 chr3L_8790001 S3 904 chr3L 9076912 9076943 chr3L 9084497 9084528 412 5 7584 3.0 2.0 2.5 1.4 7616 chr3L 9076912 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084528 exon Tequila + chr3L_5_9080001 chr3L_9080001 S3 908 chr3L 9130531 9130579 chr3L 9134317 9134365 412 9 3785 4.0 1.0 2.5 2.6 3834 chr3L 9130531 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134365 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 S3 909 chr3L 9164678 9164709 chr3L 9166170 9166201 hobo 5 1491 3.5 0.0 1.8 1.8 1523 chr3L 9164678 intron Rdl - chr3L 9165440 intron Rdl - chr3L 9166201 intron Rdl - chr3L_5_9165001 chr3L_9165001 S3 911 chr3L 9219223 9219264 chr3L 9219920 9219952 jockey 9 695 5.0 2.5 3.8 1.9 729 chr3L 9219223 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219952 intergenic not near genes chr3L_9_9215001 chr3L_9215001 S3 912 chr3L 9270600 9270644 chr3L 9278380 9278403 roo 6 7773 1.5 4.0 2.8 1.6 7803 chr3L 9270600 intron GluRIB + chr3L 9274502 intron GluRIB + chr3L 9278403 exon GluRIB + chr3L_6_9270001 chr3L_9270001 S3 913 chr3L 9501681 9501730 chr3L 9502187 9502216 roo 5 503 1.0 1.0 1.0 2.5 535 chr3L 9501681 intron path - chr3L 9501948 intron path - chr3L 9502216 intron path - chr3L_5_9500001 chr3L_9500001 S3 915 chr3L 9526490 9526510 chr3L 9528190 9528215 Doc 4 1704 1.5 1.5 1.5 1.6 1725 chr3L 9526490 intergenic not near genes chr3L 9527352 intergenic not near genes chr3L 9528215 intergenic not near genes chr3L_4_9525001 chr3L_9525001 S3 917 chr3L 9533726 9533785 chr3L 9541311 9541357 412 10 7582 2.5 8.0 5.2 1.6 7631 chr3L 9533726 intergenic not near genes chr3L 9537542 intergenic not near genes chr3L 9541357 intergenic not near genes chr3L_10_9535001 chr3L_9535001 S3 918 chr3L 9571888 9571926 chr3L 9572261 9572299 jockey 6 370 2.5 0.5 1.5 2.4 411 chr3L 9571888 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572299 intron CG42673 + chr3L_6_9570001 chr3L_9570001 S3 919 chr3L 9575885 9575932 chr3L 9580990 9581037 jockey 7 5102 1.5 1.0 1.2 3.2 5152 chr3L 9575885 intron CG42673 + chr3L 9578461 intron CG42673 + chr3L 9581037 intron CG42673 + chr3L_7_9575001 chr3L_9575001 S3 925 chr3L 9929681 9929696 chr3L 9938485 9938500 roo 4 8804 1.5 2.5 2.0 1.3 8819 chr3L 9929681 intron CG34356 + chr3L 9934090 intron CG34356 + chr3L 9938500 intron CG34356 + chr3L_4_9930001 chr3L_9930001 S3 935 chr3L 10414923 10414972 chr3L 10417320 10417369 Doc 6 2395 2.0 2.5 2.2 1.9 2446 chr3L 10414923 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417369 intergenic not near genes chr3L_6_10415001 chr3L_10415001 S3 950 chr3L 11087037 11087086 chr3L 11088850 11088885 S-element 4 1802 0.5 1.0 0.8 2.2 1848 chr3L 11087037 intron JIL-1 - chr3L 11087961 intron JIL-1 - chr3L 11088885 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 S3 954 chr3L 11264445 11264491 chr3L 11271417 11271457 17.6 9 6974 4.5 3.5 4.0 1.8 7012 chr3L 11264445 intergenic not near genes chr3L 11267951 intergenic not near genes chr3L 11271457 intergenic not near genes chr3L_9_11265001 chr3L_11265001 S3 956 chr3L 11329694 11329718 chr3L 11332896 11332944 jockey 5 3222 4.0 1.0 2.5 1.4 3250 chr3L 11329694 intergenic not near genes chr3L 11331319 intergenic not near genes chr3L 11332944 intergenic not near genes chr3L_5_11330001 chr3L_11330001 S3 963 chr3L 11723065 11723109 chr3L 11727885 11727929 Doc 9 4820 0.0 3.0 1.5 3.6 4864 chr3L 11723065 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727929 3` UTR Bmcp + chr3L_9_11725001 chr3L_11725001 S3 969 chr3L 11864543 11864580 chr3L 11865857 11865883 pogo 4 1314 3.0 4.0 3.5 0.9 1340 chr3L 11864543 intron CG44837 - chr3L 11865213 intron CG44837 - chr3L 11865883 intron CG44837 - chr3L_4_11865001 chr3L_11865001 S3 983 chr3L 12874900 12874956 chr3L 12877217 12877273 jockey 6 2316 1.5 0.5 1.0 3.0 2373 chr3L 12874900 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877273 intergenic not near genes chr3L_6_12875001 chr3L_12875001 S3 985 chr3L 12919266 12919311 chr3L 12924749 12924749 Rt1c 5 5483 0.5 3.0 1.8 1.8 5483 chr3L 12919266 intergenic not near genes chr3L 12922008 intergenic not near genes chr3L 12924749 intergenic not near genes chr3L_5_12920001 chr3L_12920001 S3 986 chr3L 12929710 12929736 chr3L 12930051 12930067 INE-1 4 338 0.0 2.0 1.0 2.0 357 chr3L 12929710 intergenic not near genes chr3L 12929888 intergenic not near genes chr3L 12930067 intergenic not near genes chr3L_4_12925001 chr3L_12925001 S3 988 chr3L 12957772 12957795 chr3L 12962279 12962300 copia 4 4506 1.0 2.0 1.5 1.6 4528 chr3L 12957772 intergenic not near genes chr3L 12960036 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_4_12960001 chr3L_12960001 S3 999 chr3L 13525142 13525182 chr3L 13532963 13532998 roo 4 7820 1.0 4.5 2.8 1.1 7856 chr3L 13525142 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532998 intergenic not near genes chr3L_4_13525001 chr3L_13525001 S3 1005 chr3L 13804527 13804568 chr3L 13822838 13822879 roo 5 18311 3.0 3.0 3.0 1.2 18352 chr3L 13804527 intergenic not near genes chr3L 13813703 intergenic not near genes chr3L 13822879 intergenic not near genes chr3L_5_13810001 chr3L_13810001 S3 1015 chr3L 14245550 14245583 chr3L 14245665 14245702 1360 13 119 4.5 1.0 2.8 3.4 152 chr3L 14245550 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245702 intergenic CR44561 -,CR44560 + chr3L_13_14245001 chr3L_14245001 S3 1018 chr3L 14295973 14296014 chr3L 14296469 14296525 roo 12 509 2.0 1.0 1.5 4.8 552 chr3L 14295973 intron fz + chr3L 14296249 intron fz + chr3L 14296525 intron fz + chr3L_12_14295001 chr3L_14295001 S3 1019 chr3L 14312023 14312049 chr3L 14316842 14316888 X-element 6 4824 2.0 5.0 3.5 1.3 4865 chr3L 14312023 exon fz + chr3L 14314456 intron fz + chr3L 14316888 intron fz + chr3L_6_14310001 chr3L_14310001 S3 1024 chr3L 14468433 14468461 chr3L 14473664 14473692 copia 4 5231 2.5 3.5 3.0 1.0 5259 chr3L 14468433 intron bbg - chr3L 14471062 intron bbg - chr3L 14473692 intron bbg - chr3L_4_14470001 chr3L_14470001 S3 1029 chr3L 14721165 14721208 chr3L 14723033 14723061 Rt1c 6 1861 3.0 4.5 3.8 1.2 1896 chr3L 14721165 intron ome + chr3L 14722113 intron ome + chr3L 14723061 intron ome + chr3L_6_14720001 chr3L_14720001 S3 1030 chr3L 14725583 14725623 chr3L 14728601 14728637 Doc 6 3018 1.5 1.5 1.5 2.4 3054 chr3L 14725583 intron ome + chr3L 14727110 intron ome + chr3L 14728637 intron ome + chr3L_6_14725001 chr3L_14725001 S3 1033 chr3L 15085026 15085081 chr3L 15086217 15086272 1360 4 1186 1.0 3.5 2.2 1.2 1246 chr3L 15085026 intron cp309 - chr3L 15085649 intron cp309 - chr3L 15086272 intron cp309 - chr3L_4_15085001 chr3L_15085001 S3 1041 chr3L 15423742 15423771 chr3L 15426611 15426640 opus 4 2869 3.5 2.0 2.8 1.1 2898 chr3L 15423742 intergenic not near genes chr3L 15425191 intergenic not near genes chr3L 15426640 intergenic not near genes chr3L_4_15425001 chr3L_15425001 S3 1051 chr3L 15899211 15899249 chr3L 15899793 15899838 jockey 8 582 4.0 2.0 3.0 2.0 627 chr3L 15899211 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899838 intergenic sff - chr3L_8_15895001 chr3L_15895001 S3 1052 chr3L 15929186 15929223 chr3L 15938358 15938395 roo 6 9172 1.5 1.5 1.5 2.4 9209 chr3L 15929186 intron Pka-C3 - chr3L 15933790 intron Pka-C3 - chr3L 15938395 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 S3 1056 chr3L 16184103 16184136 chr3L 16188947 16188980 X-element 7 4844 2.0 2.0 2.0 2.3 4877 chr3L 16184103 intergenic not near genes chr3L 16186542 intergenic not near genes chr3L 16188980 intergenic not near genes chr3L_7_16185001 chr3L_16185001 S3 1058 chr3L 16443824 16443872 chr3L 16446189 16446237 Doc 5 2365 2.0 2.5 2.2 1.6 2413 chr3L 16443824 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446237 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 S3 1061 chr3L 16493950 16493998 chr3L 16494492 16494539 jockey 8 538 6.0 1.0 3.5 1.8 589 chr3L 16493950 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494539 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 S3 1064 chr3L 16616498 16616527 chr3L 16621847 16621880 297 7 5350 3.0 5.0 4.0 1.4 5382 chr3L 16616498 3` UTR Abl - chr3L 16619189 3` UTR Abl - chr3L 16621880 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 S3 1065 chr3L 16684006 16684047 chr3L 16689252 16689264 copia 5 5239 2.0 1.5 1.8 1.8 5258 chr3L 16684006 intron,intron Lasp -,CG43954 - chr3L 16686635 intron,intron Lasp -,CG43954 - chr3L 16689264 intron,intron Lasp -,CG43954 - chr3L_5_16685001 chr3L_16685001 S3 1071 chr3L 16945706 16945757 chr3L 16954884 16954933 roo 11 9175 3.0 4.5 3.8 2.3 9227 chr3L 16945706 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954933 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 S3 1074 chr3L 17084982 17085034 chr3L 17094156 17094208 roo 9 9174 2.5 3.0 2.8 2.4 9226 chr3L 17084982 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094208 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 S3 1082 chr3L 17516959 17517009 chr3L 17524542 17524592 412 10 7582 2.5 4.0 3.2 2.4 7633 chr3L 17516959 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524592 3` UTR CG7564 + chr3L_10_17520001 chr3L_17520001 S3 1086 chr3L 17730825 17730859 chr3L 17738180 17738214 mdg1 7 7355 2.0 3.0 2.5 2.0 7389 chr3L 17730825 intron Ccn + chr3L 17734520 intron Ccn + chr3L 17738214 intron Ccn + chr3L_7_17730001 chr3L_17730001 S3 1097 chr3L 18047685 18047727 chr3L 18056767 18056804 roo 6 9081 2.5 0.0 1.2 2.7 9119 chr3L 18047685 intron Eip75B - chr3L 18052244 intron Eip75B - chr3L 18056804 intron Eip75B - chr3L_6_18050001 chr3L_18050001 S3 1106 chr3L 18593927 18593980 chr3L 18595932 18595988 Doc 9 2004 1.5 0.5 1.0 4.5 2061 chr3L 18593927 intergenic term - chr3L 18594958 intergenic not near genes chr3L 18595988 intergenic CR45389 + chr3L_9_18590001 chr3L_18590001 S3 1112 chr3L 18772391 18772428 chr3L 18781097 18781134 roo 5 8706 3.5 3.5 3.5 1.1 8743 chr3L 18772391 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781134 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 S3 1121 chr3L 19115619 19115649 chr3L 19115819 19115854 BS 5 204 1.5 1.0 1.2 2.3 235 chr3L 19115619 intron CG14082 - chr3L 19115736 intron CG14082 - chr3L 19115854 intron CG14082 - chr3L_5_19115001 chr3L_19115001 S3 1122 chr3L 19117032 19117064 chr3L 19124498 19124536 mdg1 5 7471 4.5 3.5 4.0 1.0 7504 chr3L 19117032 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124536 intron CG14082 - chr3L_5_19120001 chr3L_19120001 S3 1123 chr3L 19208050 19208090 chr3L 19209449 19209479 Doc 7 1396 2.0 2.5 2.2 2.2 1429 chr3L 19208050 intron fz2 - chr3L 19208764 intron fz2 - chr3L 19209479 intron fz2 - chr3L_7_19205001 chr3L_19205001 S3 1134 chr3L 19820276 19820313 chr3L 19827850 19827887 412 8 7573 5.0 0.5 2.8 2.1 7611 chr3L 19820276 intron Deaf1 + chr3L 19824082 intron Deaf1 + chr3L 19827887 intron Deaf1 + chr3L_8_19820001 chr3L_19820001 S3 1135 chr3L 19848484 19848532 chr3L 19857699 19857720 roo 7 9210 1.5 3.5 2.5 2.0 9236 chr3L 19848484 intron Papss + chr3L 19853102 intron Papss + chr3L 19857720 intron Papss + chr3L_7_19850001 chr3L_19850001 S3 1143 chr3L 20113635 20113677 chr3L 20122917 20122959 roo 10 9280 4.5 3.5 4.0 2.0 9324 chr3L 20113635 intergenic not near genes chr3L 20118297 intergenic not near genes chr3L 20122959 intergenic not near genes chr3L_10_20115001 chr3L_20115001 S3 1149 chr3L 20257318 20257352 chr3L 20258459 20258493 pogo 7 1142 5.0 6.0 5.5 1.1 1175 chr3L 20257318 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258493 intron rdgC + chr3L_7_20255001 chr3L_20255001 S3 1153 chr3L 20476737 20476764 chr3L 20484361 20484388 springer 13 7623 8.5 3.0 5.8 1.9 7651 chr3L 20476737 3` UTR isoQC + chr3L 20480562 intergenic not near genes chr3L 20484388 3` UTR ZnT77C - chr3L_13_20480001 chr3L_20480001 S3 1154 chr3L 20487642 20487668 chr3L 20488118 20488144 INE-1 12 475 8.5 4.5 6.5 1.6 502 chr3L 20487642 intron ZnT77C - chr3L 20487893 intron ZnT77C - chr3L 20488144 exon ZnT77C - chr3L_12_20485001 chr3L_20485001 S3 1155 chr3L 20590061 20590094 chr3L 20590601 20590657 412 10 556 4.0 1.5 2.8 2.6 596 chr3L 20590061 intergenic not near genes chr3L 20590359 intergenic not near genes chr3L 20590657 intergenic not near genes chr3L_10_20590001 chr3L_20590001 S3 1160 chr3L 21014888 21014948 chr3L 21023394 21023444 Tirant 13 8502 3.5 3.0 3.2 3.1 8556 chr3L 21014888 intron skd - chr3L 21019166 intron skd - chr3L 21023444 intron skd - chr3L_13_21015001 chr3L_21015001 S3 1163 chr3L 21151855 21151893 chr3L 21156954 21157002 flea 8 5108 3.0 2.0 2.5 2.3 5147 chr3L 21151855 intron Ac78C - chr3L 21154428 intron Ac78C - chr3L 21157002 intron Ac78C - chr3L_8_21150001 chr3L_21150001 S3 1165 chr3L 21306123 21306173 chr3L 21315307 21315357 roo 12 9183 4.5 0.0 2.2 3.8 9234 chr3L 21306123 3` UTR CG7632 + chr3L 21310740 intron Pc - chr3L 21315357 3` UTR Pc - chr3L_12_21310001 chr3L_21310001 S3 1166 chr3L 21372698 21372746 chr3L 21379231 21379237 McClintock 6 6526 0.5 2.0 1.2 2.7 6539 chr3L 21372698 intergenic not near genes chr3L 21375968 intergenic not near genes chr3L 21379237 intergenic not near genes chr3L_6_21375001 chr3L_21375001 S3 1173 chr3L 21749293 21749334 chr3L 21754478 21754519 Doc 7 5185 9.0 2.0 5.5 1.1 5226 chr3L 21749293 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754519 intron Syn1 - chr3L_7_21750001 chr3L_21750001 S3 1194 chr3L 22555747 22555795 chr3L 22563242 22563266 blood 6 7489 1.5 2.0 1.8 2.1 7519 chr3L 22555747 intergenic not near genes chr3L 22559506 intergenic not near genes chr3L 22563266 intergenic not near genes chr3L_6_22555001 chr3L_22555001 S3 1196 chr3L 22577620 22577637 chr3L 22582408 22582450 Doc 6 4808 3.5 4.0 3.8 1.2 4830 chr3L 22577620 intergenic not near genes chr3L 22580035 intergenic not near genes chr3L 22582450 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 S3 1197 chr3L 22617168 22617198 chr3L 22624645 22624675 blood 4 7477 3.5 3.5 3.5 0.9 7507 chr3L 22617168 intron CG14459 - chr3L 22620922 intron CG14459 - chr3L 22624675 intron CG14459 - chr3L_4_22620001 chr3L_22620001 S3 1199 chr3L 22761364 22761402 chr3L 22766823 22766861 Ivk 10 5459 4.0 1.5 2.8 2.6 5497 chr3L 22761364 intron SPoCk + chr3L 22764112 intron SPoCk + chr3L 22766861 intron SPoCk + chr3L_10_22760001 chr3L_22760001 S3 1206 chr3L 22989840 22989886 chr3L 22996839 22996885 297 13 6999 2.0 3.5 2.8 3.4 7045 chr3L 22989840 intergenic not near genes chr3L 22993362 intergenic not near genes chr3L 22996885 intergenic not near genes chr3L_13_22990001 chr3L_22990001 S3 1210 chr3L 24012406 24012428 chr3L 24020772 24020794 roo 4 8365 2.5 1.0 1.8 1.4 8388 chr3L 24012406 intergenic not near genes chr3L 24016600 intergenic not near genes chr3L 24020794 intergenic not near genes chr3L_4_24015001 chr3L_24015001 S3 1211 chr3L 24168768 24168821 chr3L 24176114 24176174 ZAM 15 7350 3.5 4.5 4.0 3.0 7406 chr3L 24168768 intron Snap25 + chr3L 24172471 intron Snap25 + chr3L 24176174 intron Snap25 + chr3L_15_24170001 chr3L_24170001 S3 1213 chr3L 24791878 24791899 chr3L 24796681 24796703 Doc 6 4804 1.5 1.0 1.2 2.7 4825 chr3L 24791878 intergenic not near genes chr3L 24794290 intergenic not near genes chr3L 24796703 intergenic not near genes chr3L_6_24790001 chr3L_24790001 S3 1215 chr3L 25628499 25628512 chr3L 25633275 25633308 F-element 4 4788 3.5 2.0 2.8 1.1 4809 chr3L 25628499 intron CG41343 - chr3L 25630904 intron CG41343 - chr3L 25633308 intron CG41343 - chr3L_4_25630001 chr3L_25630001 S3 1223 chr3R 4105018 4105062 chr3R 4110247 4110291 copia 4 5228 1.5 2.0 1.8 1.4 5273 chr3R 4105018 intergenic not near genes chr3R 4107654 intergenic not near genes chr3R 4110291 intergenic not near genes chr3R_4_4105001 chr3R_4105001 S3 1225 chr3R 4206056 4206099 chr3R 4211649 4211699 mdg3 14 5596 1.0 2.5 1.8 5.0 5643 chr3R 4206056 intron CG14636 - chr3R 4208878 intron CG14636 - chr3R 4211699 intron CG14636 - chr3R_14_4205001 chr3R_4205001 S3 1227 chr3R 4366741 4366779 chr3R 4375149 4375187 roo 7 8408 2.0 1.5 1.8 2.5 8446 chr3R 4366741 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375187 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 S3 1228 chr3R 4408400 4408417 chr3R 4412719 4412746 Juan 4 4326 3.5 1.5 2.5 1.1 4346 chr3R 4408400 intron CG32944 - chr3R 4410573 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_4_4410001 chr3R_4410001 S3 1229 chr3R 4408418 4408431 chr3R 4412709 4412760 Juan 5 4321 3.0 1.5 2.2 1.6 4342 chr3R 4408418 intron CG32944 - chr3R 4410589 intron CG32944 - chr3R 4412760 intron CG32944 - chr3R_5_4410001 chr3R_4410001 S3 1238 chr3R 4753222 4753250 chr3R 4757540 4757578 F-element 12 4324 6.5 4.5 5.5 1.8 4356 chr3R 4753222 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757578 intron,exon atms +,CG44098 - chr3R_12_4755001 chr3R_4755001 S3 1241 chr3R 4887481 4887506 chr3R 4894858 4894908 rover 6 7397 3.5 1.5 2.5 1.7 7427 chr3R 4887481 intergenic not near genes chr3R 4891194 intergenic not near genes chr3R 4894908 intergenic not near genes chr3R_6_4890001 chr3R_4890001 S3 1249 chr3R 5045821 5045847 chr3R 5052947 5052974 HMS-Beagle 8 7125 5.0 3.0 4.0 1.6 7153 chr3R 5045821 3` UTR CR43635 - chr3R 5049398 intergenic not near genes chr3R 5052974 intergenic CR45588 - chr3R_8_5045001 chr3R_5045001 S3 1250 chr3R 5067957 5068004 chr3R 5073499 5073546 mdg3 6 5542 2.5 2.0 2.2 1.9 5589 chr3R 5067957 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073546 intergenic not near genes chr3R_6_5070001 chr3R_5070001 S3 1256 chr3R 5445939 5445972 chr3R 5452424 5452457 Burdock 7 6485 0.0 4.0 2.0 2.3 6518 chr3R 5445939 intron CG14669 + chr3R 5449198 intron CG14669 + chr3R 5452457 intron CG14669 + chr3R_7_5445001 chr3R_5445001 S3 1261 chr3R 5745992 5746044 chr3R 5746258 5746310 pogo 9 266 2.5 1.0 1.8 3.2 318 chr3R 5745992 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746310 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 S3 1263 chr3R 5809093 5809144 chr3R 5809359 5809410 pogo 10 266 2.0 1.5 1.8 3.6 317 chr3R 5809093 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809410 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 S3 1265 chr3R 5927555 5927564 chr3R 5927820 5927829 pogo 4 265 3.5 5.0 4.2 0.8 274 chr3R 5927555 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_4_5925001 chr3R_5925001 S3 1269 chr3R 6015944 6015987 chr3R 6024450 6024493 Tirant 15 8501 5.0 4.0 4.5 2.7 8549 chr3R 6015944 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024493 intergenic not near genes chr3R_15_6020001 chr3R_6020001 S3 1271 chr3R 6158489 6158521 chr3R 6167097 6167115 Tirant 5 8605 1.0 2.5 1.8 1.8 8626 chr3R 6158489 intergenic not near genes chr3R 6162802 intergenic not near genes chr3R 6167115 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 S3 1275 chr3R 6510009 6510048 chr3R 6515115 6515154 jockey 5 5106 2.5 0.5 1.5 2.0 5145 chr3R 6510009 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515154 intergenic not near genes chr3R_5_6510001 chr3R_6510001 S3 1297 chr3R 7694558 7694605 chr3R 7713638 7713691 invader3 6 19085 1.5 0.5 1.0 3.0 19133 chr3R 7694558 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713691 intergenic not near genes chr3R_6_7700001 chr3R_7700001 S3 1299 chr3R 7849630 7849669 chr3R 7850821 7850836 1360 7 1187 0.0 1.0 0.5 4.7 1206 chr3R 7849630 intron CG34384 + chr3R 7850233 intron CG34384 + chr3R 7850836 intron CG34384 + chr3R_7_7850001 chr3R_7850001 S3 1300 chr3R 8094389 8094432 chr3R 8099719 8099757 Transpac 6 5329 4.0 3.0 3.5 1.3 5368 chr3R 8094389 intron CG7900 + chr3R 8097073 intron CG7900 + chr3R 8099757 intron CG7900 + chr3R_6_8095001 chr3R_8095001 S3 1301 chr3R 8101737 8101785 chr3R 8104846 8104894 G2 11 3106 5.0 4.0 4.5 2.0 3157 chr3R 8101737 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104894 3` UTR CG7900 + chr3R_11_8100001 chr3R_8100001 S3 1305 chr3R 8402996 8403018 chr3R 8412177 8412209 roo 5 9188 6.0 3.5 4.8 0.9 9213 chr3R 8402996 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412209 intron CG45263 - chr3R_5_8405001 chr3R_8405001 S3 1308 chr3R 8601778 8601793 chr3R 8610946 8610971 roo 5 9175 2.0 1.5 1.8 1.8 9193 chr3R 8601778 intron 5-HT2B + chr3R 8606374 intron 5-HT2B + chr3R 8610971 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 S3 1314 chr3R 8894855 8894888 chr3R 8896036 8896069 1360 5 1180 2.0 3.0 2.5 1.4 1214 chr3R 8894855 intron pyd - chr3R 8895462 intron pyd - chr3R 8896069 intron pyd - chr3R_5_8895001 chr3R_8895001 S3 1315 chr3R 8898199 8898213 chr3R 8913804 8913818 297 5 15605 4.5 5.0 4.8 0.9 15619 chr3R 8898199 intron pyd - chr3R 8906008 intron pyd - chr3R 8913818 intron pyd - chr3R_5_8905001 chr3R_8905001 S3 1326 chr3R 9278767 9278791 chr3R 9284052 9284076 Rt1a 6 5285 1.0 3.5 2.2 1.9 5309 chr3R 9278767 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284076 intergenic not near genes chr3R_6_9280001 chr3R_9280001 S3 1327 chr3R 9319552 9319601 chr3R 9320012 9320061 jockey 8 457 1.0 2.5 1.8 2.9 509 chr3R 9319552 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320061 intron CG8861 - chr3R_8_9315001 chr3R_9315001 S3 1328 chr3R 9361811 9361841 chr3R 9362077 9362107 pogo 7 266 3.0 3.0 3.0 1.8 296 chr3R 9361811 3` UTR CG45050 + chr3R 9361959 3` UTR CG45050 + chr3R 9362107 3` UTR CG45050 + chr3R_7_9360001 chr3R_9360001 S3 1339 chr3R 10231764 10231812 chr3R 10237366 10237414 mdg3 4 5602 1.0 1.0 1.0 2.0 5650 chr3R 10231764 intron CG42795 + chr3R 10234589 intron CG42795 + chr3R 10237414 intron CG42795 + chr3R_4_10230001 chr3R_10230001 S3 1346 chr3R 10804149 10804187 chr3R 10811706 10811744 17.6 7 7556 3.0 1.5 2.2 2.2 7595 chr3R 10804149 intergenic CG14692 - chr3R 10807946 intergenic not near genes chr3R 10811744 3` UTR CG14693 - chr3R_7_10805001 chr3R_10805001 S3 1357 chr3R 11379222 11379246 chr3R 11388402 11388426 roo 4 9179 1.0 2.0 1.5 1.6 9204 chr3R 11379222 intron pros + chr3R 11383824 intron pros + chr3R 11388426 intron pros + chr3R_4_11380001 chr3R_11380001 S3 1366 chr3R 11841056 11841089 chr3R 11846262 11846305 BS 7 5213 3.5 2.5 3.0 1.8 5249 chr3R 11841056 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846305 intron CG6959 - chr3R_7_11840001 chr3R_11840001 S3 1371 chr3R 11957833 11957873 chr3R 11958141 11958166 S-element 7 305 2.0 0.0 1.0 3.5 333 chr3R 11957833 intergenic not near genes chr3R 11958000 intergenic not near genes chr3R 11958166 intergenic not near genes chr3R_7_11955001 chr3R_11955001 S3 1372 chr3R 12022866 12022908 chr3R 12025068 12025110 pogo 11 2201 3.5 1.0 2.2 3.4 2244 chr3R 12022866 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025110 intergenic not near genes chr3R_11_12020001 chr3R_12020001 S3 1389 chr3R 12920151 12920182 chr3R 12925369 12925410 copia 8 5225 3.0 3.0 3.0 2.0 5259 chr3R 12920151 intron beat-Vb + chr3R 12922780 intron beat-Vb + chr3R 12925410 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 S3 1395 chr3R 13135811 13135852 chr3R 13138006 13138052 pogo 6 2199 2.5 3.5 3.0 1.5 2241 chr3R 13135811 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138052 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 S3 1396 chr3R 13143032 13143066 chr3R 13148627 13148667 mdg3 8 5599 1.5 3.5 2.5 2.3 5635 chr3R 13143032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145850 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148667 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 S3 1410 chr3R 15162530 15162571 chr3R 15167322 15167363 F-element 8 4791 3.0 3.5 3.2 1.9 4833 chr3R 15162530 intron Gyc88E + chr3R 15164946 intron Gyc88E + chr3R 15167363 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 S3 1413 chr3R 15601155 15601190 chr3R 15608702 15608737 412 5 7547 2.0 3.5 2.8 1.3 7582 chr3R 15601155 intergenic not near genes chr3R 15604946 intergenic not near genes chr3R 15608737 intergenic not near genes chr3R_5_15600001 chr3R_15600001 S3 1414 chr3R 15618723 15618749 chr3R 15626221 15626248 blood 4 7498 4.5 3.5 4.0 0.8 7525 chr3R 15618723 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626248 intergenic not near genes chr3R_4_15620001 chr3R_15620001 S3 1427 chr3R 16756306 16756345 chr3R 16762512 16762561 diver 10 6214 2.0 1.5 1.8 3.6 6255 chr3R 16756306 intron bxd - chr3R 16759434 intron bxd - chr3R 16762561 intron bxd - chr3R_10_16755001 chr3R_16755001 S3 1432 chr3R 17294651 17294696 chr3R 17295104 17295147 BS 8 453 3.0 3.5 3.2 1.9 496 chr3R 17294651 intergenic not near genes chr3R 17294899 intergenic not near genes chr3R 17295147 intergenic not near genes chr3R_8_17290001 chr3R_17290001 S3 1438 chr3R 17591266 17591278 chr3R 17591727 17591739 F-element 4 461 5.5 2.0 3.8 0.8 473 chr3R 17591266 intergenic not near genes chr3R 17591502 intergenic not near genes chr3R 17591739 intergenic not near genes chr3R_4_17590001 chr3R_17590001 S3 1439 chr3R 17638296 17638345 chr3R 17638807 17638851 roo 10 510 2.0 1.0 1.5 4.0 555 chr3R 17638296 intron CG43175 + chr3R 17638574 intron CG43175 + chr3R 17638851 intron,intron CG43175 +,CR45222 + chr3R_10_17635001 chr3R_17635001 S3 1441 chr3R 17925836 17925871 chr3R 17927328 17927363 hobo 5 1492 3.5 1.5 2.5 1.4 1527 chr3R 17925836 intron cpo + chr3R 17926600 intron cpo + chr3R 17927363 intron cpo + chr3R_5_17925001 chr3R_17925001 S3 1442 chr3R 18032783 18032810 chr3R 18040476 18040508 opus 4 7696 0.0 4.0 2.0 1.3 7725 chr3R 18032783 intergenic not near genes chr3R 18036646 intergenic not near genes chr3R 18040508 intergenic not near genes chr3R_4_18035001 chr3R_18035001 S3 1443 chr3R 18061569 18061606 chr3R 18063162 18063199 F-element 7 1592 1.0 3.5 2.2 2.2 1630 chr3R 18061569 intergenic not near genes chr3R 18062384 intergenic not near genes chr3R 18063199 intergenic not near genes chr3R_7_18060001 chr3R_18060001 S3 1448 chr3R 18606490 18606511 chr3R 18610747 18610767 F-element 4 4257 4.0 4.0 4.0 0.8 4277 chr3R 18606490 intron,intron qin +,CG14304 - chr3R 18608628 intron,intron qin +,CG14304 - chr3R 18610767 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 S3 1449 chr3R 18606512 18606529 chr3R 18610746 18610780 F-element 4 4250 2.5 4.0 3.2 1.0 4268 chr3R 18606512 intron,intron qin +,CG14304 - chr3R 18608646 intron,intron qin +,CG14304 - chr3R 18610780 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 S3 1473 chr3R 20156675 20156712 chr3R 20165870 20165907 roo 4 9193 1.5 1.5 1.5 1.6 9232 chr3R 20156675 intergenic not near genes chr3R 20161291 intergenic not near genes chr3R 20165907 intergenic not near genes chr3R_4_20160001 chr3R_20160001 S3 1475 chr3R 20245267 20245305 chr3R 20248899 20248940 F-element 6 3634 0.0 0.0 0.0 6.0 3673 chr3R 20245267 3` UTR Nlg4 + chr3R 20247104 intergenic not near genes chr3R 20248940 intergenic not near genes chr3R_6_20245001 chr3R_20245001 S3 1477 chr3R 20266504 20266543 chr3R 20273000 20273038 Burdock 5 6496 0.5 2.0 1.2 2.3 6534 chr3R 20266504 intron cic + chr3R 20269771 intron cic + chr3R 20273038 intron cic + chr3R_5_20265001 chr3R_20265001 S3 1480 chr3R 20331005 20331029 chr3R 20331516 20331540 roo 5 511 2.5 2.0 2.2 1.6 535 chr3R 20331005 intergenic Sirt2 + chr3R 20331272 intergenic Sirt2 + chr3R 20331540 intergenic not near genes chr3R_5_20330001 chr3R_20330001 S3 1486 chr3R 20506568 20506606 chr3R 20507396 20507429 BS 8 826 0.5 3.0 1.8 2.9 861 chr3R 20506568 intergenic Or92a + chr3R 20506998 intergenic CG4288 - chr3R 20507429 3` UTR CG4288 - chr3R_8_20505001 chr3R_20505001 S3 1495 chr3R 21141651 21141672 chr3R 21150157 21150178 Tirant 4 8506 6.0 2.0 4.0 0.8 8527 chr3R 21141651 intron SNF4Agamma + chr3R 21145914 intron SNF4Agamma + chr3R 21150178 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 S3 1496 chr3R 21141673 21141707 chr3R 21150153 21150212 Tirant 5 8490 4.0 2.0 3.0 1.2 8539 chr3R 21141673 intron SNF4Agamma + chr3R 21145942 intron SNF4Agamma + chr3R 21150212 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 S3 1513 chr3R 22450524 22450573 chr3R 22453189 22453238 NOF 16 2663 2.0 4.5 3.2 3.8 2714 chr3R 22450524 intron CG34376 + chr3R 22451881 intron CG34376 + chr3R 22453238 intron CG34376 + chr3R_16_22450001 chr3R_22450001 S3 1530 chr3R 23558377 23558424 chr3R 23560182 23560230 Bari1 7 1806 0.0 2.0 1.0 3.5 1853 chr3R 23558377 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560230 intron beat-IV + chr3R_7_23555001 chr3R_23555001 S3 1532 chr3R 23684675 23684724 chr3R 23685181 23685235 roo 21 507 4.5 5.5 5.0 3.5 560 chr3R 23684675 exon CG18754 + chr3R 23684955 intron CG18754 + chr3R 23685235 exon CG18754 + chr3R_21_23680001 chr3R_23680001 S3 1535 chr3R 23835389 23835436 chr3R 23844564 23844609 roo 5 9174 1.5 0.0 0.8 2.8 9220 chr3R 23835389 intron CG34355 + chr3R 23839999 intron CG34355 + chr3R 23844609 intron CG34355 + chr3R_5_23835001 chr3R_23835001 S3 1540 chr3R 24072070 24072114 chr3R 24072533 24072575 jockey 4 459 6.0 0.0 3.0 1.0 505 chr3R 24072070 intron 4EHP - chr3R 24072322 intron 4EHP - chr3R 24072575 intron 4EHP - chr3R_4_24070001 chr3R_24070001 S3 1544 chr3R 24207198 24207225 chr3R 24212299 24212321 flea 4 5100 6.5 1.5 4.0 0.8 5123 chr3R 24207198 intron twin - chr3R 24209760 intron twin - chr3R 24212321 intron twin - chr3R_4_24205001 chr3R_24205001 S3 1548 chr3R 24730073 24730105 chr3R 24732474 24732488 Doc 5 2399 3.0 0.0 1.5 2.0 2415 chr3R 24730073 intron tok + chr3R 24731280 intron tok + chr3R 24732488 intron tok + chr3R_5_24730001 chr3R_24730001 S3 1550 chr3R 24927115 24927152 chr3R 24931926 24931966 Doc 8 4809 2.5 2.5 2.5 2.3 4851 chr3R 24927115 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931966 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 S3 1566 chr3R 25725807 25725848 chr3R 25734992 25735033 roo 6 9185 2.0 3.0 2.5 1.7 9226 chr3R 25725807 intron LpR2 - chr3R 25730420 intron LpR2 - chr3R 25735033 intron LpR2 - chr3R_6_25730001 chr3R_25730001 S3 1567 chr3R 25832673 25832722 chr3R 25841880 25841919 roo 12 9206 1.0 2.5 1.8 4.3 9246 chr3R 25832673 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841919 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 S3 1578 chr3R 26376304 26376311 chr3R 26385489 26385496 roo 4 9185 9.5 0.0 4.8 0.7 9192 chr3R 26376304 intergenic not near genes chr3R 26380900 intergenic not near genes chr3R 26385496 intergenic not near genes chr3R_4_26380001 chr3R_26380001 S3 1580 chr3R 26510505 26510531 chr3R 26519585 26519611 roo 4 9080 2.5 0.5 1.5 1.6 9106 chr3R 26510505 intron plum - chr3R 26515058 intron plum - chr3R 26519611 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 S3 1584 chr3R 26558303 26558359 chr3R 26565641 26565686 Stalker4 12 7332 2.5 4.5 3.5 2.7 7383 chr3R 26558303 intron scrib + chr3R 26561994 intron scrib + chr3R 26565686 intron scrib + chr3R_12_26560001 chr3R_26560001 S3 1587 chr3R 26642716 26642738 chr3R 26643134 26643156 jockey 6 418 1.5 2.5 2.0 2.0 440 chr3R 26642716 intergenic not near genes chr3R 26642936 intergenic not near genes chr3R 26643156 intergenic not near genes chr3R_6_26640001 chr3R_26640001 S3 1597 chr3R 27007387 27007424 chr3R 27016547 27016548 roo 5 9146 2.0 1.0 1.5 2.0 9161 chr3R 27007387 intron RYa-R + chr3R 27011968 intron RYa-R + chr3R 27016548 intron RYa-R + chr3R_5_27010001 chr3R_27010001 S3 1602 chr3R 27140489 27140515 chr3R 27148124 27148150 412 6 7633 3.5 1.5 2.5 1.7 7661 chr3R 27140489 intron CG6051 - chr3R 27144320 intron CG6051 - chr3R 27148150 intron CG6051 - chr3R_6_27140001 chr3R_27140001 S3 1603 chr3R 27342778 27342818 chr3R 27351373 27351424 Tirant 8 8604 1.5 1.0 1.2 3.6 8646 chr3R 27342778 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351424 intron CG42534 + chr3R_8_27345001 chr3R_27345001 S3 1613 chr3R 27862936 27862968 chr3R 27868266 27868298 Transpac 4 5330 0.5 0.0 0.2 3.3 5362 chr3R 27862936 intron CG34353 - chr3R 27865617 intron CG34353 - chr3R 27868298 intron CG34353 - chr3R_4_27865001 chr3R_27865001 S3 1614 chr3R 27875683 27875724 chr3R 27882758 27882804 297 6 7079 0.5 4.5 2.5 1.7 7121 chr3R 27875683 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882804 intron CG34353 - chr3R_6_27875001 chr3R_27875001 S3 1615 chr3R 28068477 28068495 chr3R 28073944 28073962 I-element 4 5466 0.0 3.5 1.8 1.4 5485 chr3R 28068477 intron CG34362 + chr3R 28071220 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_4_28070001 chr3R_28070001 S3 1618 chr3R 28302088 28302129 chr3R 28302552 28302592 jockey 7 464 2.5 1.5 2.0 2.3 504 chr3R 28302088 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302592 intergenic not near genes chr3R_7_28300001 chr3R_28300001 S3 1623 chr3R 28792852 28792890 chr3R 28797972 28797989 jockey 7 5114 0.0 3.0 1.5 2.8 5137 chr3R 28792852 intergenic not near genes chr3R 28795420 intergenic not near genes chr3R 28797989 intergenic not near genes chr3R_7_28795001 chr3R_28795001 S3 1627 chr3R 29079383 29079406 chr3R 29080775 29080803 NOF 4 1393 1.0 2.5 1.8 1.4 1420 chr3R 29079383 intron CG11873 + chr3R 29080093 intron CG11873 + chr3R 29080803 intron CG11873 + chr3R_4_29080001 chr3R_29080001 S3 1632 chr3R 29319828 29319840 chr3R 29320172 29320184 jockey 5 344 1.5 4.5 3.0 1.2 356 chr3R 29319828 intergenic Cnx99A - chr3R 29320006 intergenic Cnx99A - chr3R 29320184 intergenic not near genes chr3R_5_29320001 chr3R_29320001 S3 1633 chr3R 29406595 29406619 chr3R 29407906 29407930 jockey 4 1308 8.0 2.0 5.0 0.7 1335 chr3R 29406595 intron Ptp99A + chr3R 29407262 intron Ptp99A + chr3R 29407930 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 S3 1642 chr3R 29738243 29738291 chr3R 29739735 29739783 hobo 9 1492 2.0 1.0 1.5 3.6 1540 chr3R 29738243 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739783 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 S3 1644 chr3R 29760345 29760376 chr3R 29761564 29761601 pogo 4 1221 2.5 0.5 1.5 1.6 1256 chr3R 29760345 intergenic not near genes chr3R 29760973 intergenic not near genes chr3R 29761601 intergenic not near genes chr3R_4_29760001 chr3R_29760001 S3 1646 chr3R 29881998 29882048 chr3R 29891180 29891230 roo 5 9182 2.5 0.5 1.5 2.0 9232 chr3R 29881998 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891230 intron CG31038 + chr3R_5_29885001 chr3R_29885001 S3 1651 chr3R 30084830 30084876 chr3R 30086322 30086368 hobo 6 1491 3.0 2.0 2.5 1.7 1538 chr3R 30084830 intron sima + chr3R 30085599 intron sima + chr3R 30086368 intron sima + chr3R_6_30085001 chr3R_30085001 S3 1658 chr3R 30375526 30375570 chr3R 30383174 30383218 412 5 7648 0.5 1.5 1.0 2.5 7692 chr3R 30375526 intergenic not near genes chr3R 30379372 intergenic not near genes chr3R 30383218 intergenic not near genes chr3R_5_30375001 chr3R_30375001 S3 1662 chr3R 30480469 30480501 chr3R 30482952 30482994 jockey 10 2490 2.5 2.0 2.2 3.1 2525 chr3R 30480469 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482994 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 S3 1667 chr3R 30679512 30679551 chr3R 30687006 30687045 blood 4 7494 1.5 3.0 2.2 1.2 7533 chr3R 30679512 intergenic not near genes chr3R 30683278 intergenic not near genes chr3R 30687045 intergenic not near genes chr3R_4_30680001 chr3R_30680001 S3 1671 chr3R 30818788 30818818 chr3R 30820378 30820408 1360 6 1590 3.0 1.0 2.0 2.0 1620 chr3R 30818788 intron cindr + chr3R 30819598 intron cindr + chr3R 30820408 intron cindr + chr3R_6_30815001 chr3R_30815001 S3 1675 chr3R 31074218 31074246 chr3R 31081841 31081869 springer 4 7623 2.5 3.5 3.0 1.0 7651 chr3R 31074218 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081869 intron Sox100B + chr3R_4_31075001 chr3R_31075001 S3 1681 chr3R 31279349 31279393 chr3R 31285565 31285609 diver 7 6215 2.5 0.0 1.2 3.2 6260 chr3R 31279349 intergenic not near genes chr3R 31282479 intergenic not near genes chr3R 31285609 intergenic not near genes chr3R_7_31280001 chr3R_31280001 S3 1682 chr3R 31413068 31413105 chr3R 31418293 31418310 copia 7 5221 3.5 1.5 2.5 2.0 5242 chr3R 31413068 intron Gprk2 + chr3R 31415689 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 S3 1689 chr3R 31691508 31691553 chr3R 31696299 31696344 Doc 5 4790 4.5 3.0 3.8 1.0 4836 chr3R 31691508 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696344 intergenic not near genes chr3R_5_31690001 chr3R_31690001 S3 1696 chr3R 31997974 31998022 chr3R 32005469 32005517 blood 7 7495 3.0 4.0 3.5 1.6 7543 chr3R 31997974 intron heph - chr3R 32001746 intron heph - chr3R 32005517 intron heph - chr3R_7_32000001 chr3R_32000001 S3 1697 chr4 76476 76503 chr4 81944 81971 I-element 6 5468 5.0 1.5 3.2 1.4 5495 chr4 76476 intron pan + chr4 79224 intron pan + chr4 81971 intron pan + chr4_6_75001 chr4_75001 S3 1698 chr4 319971 320016 chr4 328172 328192 Stalker2 4 8193 2.0 2.5 2.2 1.2 8221 chr4 319971 3` UTR CG32850 + chr4 324082 intron CG32850 + chr4 328192 3` UTR,3` UTR CG32850 +,PMCA - chr4_4_320001 chr4_320001 S3 1699 chr4 671578 671624 chr4 680186 680232 Tirant 16 8607 4.5 4.5 4.5 2.9 8654 chr4 671578 intron CG11360 + chr4 675905 intron CG11360 + chr4 680232 intron CG11360 + chr4_16_675001 chr4_675001 S3 1704 chrX 906681 906730 chrX 908495 908544 S-element 6 1814 1.5 4.5 3.0 1.5 1863 chrX 906681 intron CG43867 - chrX 907612 intron CG43867 - chrX 908544 intron CG43867 - chrX_6_905001 chrX_905001 S3 1707 chrX 1513996 1514007 chrX 1514456 1514467 1360 4 460 0.0 5.0 2.5 1.1 471 chrX 1513996 intron inc + chrX 1514232 intron inc + chrX 1514467 intron inc + chrX_4_1510001 chrX_1510001 S3 1708 chrX 1518018 1518073 chrX 1523445 1523494 jockey 4 5424 2.0 1.0 1.5 1.6 5476 chrX 1518018 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523494 intergenic not near genes chrX_4_1520001 chrX_1520001 S3 1710 chrX 1954870 1954919 chrX 1962825 1962874 Stalker2 6 7954 3.0 1.0 2.0 2.0 8004 chrX 1954870 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962874 intron Hr4 + chrX_6_1955001 chrX_1955001 S3 1712 chrX 2399814 2399848 chrX 2408192 2408213 roo 5 8375 1.0 2.5 1.8 1.8 8399 chrX 2399814 intergenic not near genes chrX 2404014 intergenic not near genes chrX 2408213 intergenic not near genes chrX_5_2400001 chrX_2400001 S3 1714 chrX 3058000 3058043 chrX 3058266 3058307 pogo 4 266 0.5 1.5 1.0 2.0 307 chrX 3058000 intron kirre + chrX 3058154 intron kirre + chrX 3058307 intron kirre + chrX_4_3055001 chrX_3055001 S3 1716 chrX 3726739 3726790 chrX 3730161 3730200 NOF 6 3419 2.0 0.0 1.0 3.0 3461 chrX 3726739 intron tlk + chrX 3728470 intron tlk + chrX 3730200 intron tlk + chrX_6_3725001 chrX_3725001 S3 1724 chrX 4700382 4700413 chrX 4700750 4700781 jockey 7 366 2.0 1.5 1.8 2.5 399 chrX 4700382 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700781 3` UTR ctp + chrX_7_4700001 chrX_4700001 S3 1726 chrX 4763272 4763281 chrX 4763784 4763789 Stalker4 4 512 2.5 2.0 2.2 1.2 517 chrX 4763272 intergenic not near genes chrX 4763530 intergenic not near genes chrX 4763789 intergenic not near genes chrX_4_4760001 chrX_4760001 S3 1727 chrX 4792360 4792388 chrX 4792818 4792846 jockey 7 456 0.5 2.5 1.5 2.8 486 chrX 4792360 intergenic not near genes chrX 4792603 intergenic not near genes chrX 4792846 intergenic not near genes chrX_7_4790001 chrX_4790001 S3 1729 chrX 4990017 4990041 chrX 4997255 4997280 roo 4 7239 2.0 1.5 1.8 1.4 7263 chrX 4990017 intron CR44833 - chrX 4993648 intron CR44833 - chrX 4997280 intron CR44833 - chrX_4_4990001 chrX_4990001 S3 1730 chrX 5096276 5096293 chrX 5103860 5103871 springer 4 7586 1.5 4.0 2.8 1.1 7595 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 S3 1734 chrX 5883784 5883829 chrX 5884050 5884095 pogo 5 265 0.5 1.0 0.8 2.8 311 chrX 5883784 intron CR45668 - chrX 5883940 intron CR45668 - chrX 5884095 intron CR45668 - chrX_5_5880001 chrX_5880001 S3 1735 chrX 5884140 5884189 chrX 5884406 5884455 pogo 6 266 1.0 2.5 1.8 2.1 315 chrX 5884140 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884455 intron CR45668 - chrX_6_5880001 chrX_5880001 S3 1742 chrX 7023586 7023624 chrX 7031001 7031039 Tabor 4 7415 1.0 2.0 1.5 1.6 7453 chrX 7023586 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031039 intron CG12541 - chrX_4_7025001 chrX_7025001 S3 1743 chrX 7125225 7125273 chrX 7134409 7134457 roo 8 9183 0.0 0.0 0.0 8.0 9232 chrX 7125225 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134457 intergenic not near genes chrX_8_7125001 chrX_7125001 S3 1755 chrX 9508115 9508145 chrX 9509658 9509688 jockey 4 1543 2.5 1.0 1.8 1.4 1573 chrX 9508115 intron CG32700 - chrX 9508902 intron CG32700 - chrX 9509688 intron CG32700 - chrX_4_9505001 chrX_9505001 S3 1759 chrX 10772659 10772698 chrX 10772757 10772801 Tirant 5 102 2.5 2.0 2.2 1.6 142 chrX 10772659 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772801 intron CG15211 + chrX_5_10770001 chrX_10770001 S3 1762 chrX 11535024 11535036 chrX 11541519 11541531 Burdock 4 6495 3.5 0.0 1.8 1.4 6507 chrX 11535024 intron Drak + chrX 11538278 intron Drak + chrX 11541531 intron Drak + chrX_4_11535001 chrX_11535001 S3 1768 chrX 13429449 13429485 chrX 13430623 13430659 jockey 6 1174 0.5 1.0 0.8 3.3 1210 chrX 13429449 intergenic not near genes chrX 13430054 intergenic not near genes chrX 13430659 intergenic not near genes chrX_6_13430001 chrX_13430001 S3 1776 chrX 14936844 14936878 chrX 14946126 14946160 roo 4 9282 1.5 0.5 1.0 2.0 9316 chrX 14936844 intron pdgy - chrX 14941502 intron pdgy - chrX 14946160 intron pdgy - chrX_4_14940001 chrX_14940001 S3 1778 chrX 15273691 15273722 chrX 15274873 15274914 1360 4 1185 2.0 1.5 1.8 1.4 1223 chrX 15273691 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274914 intergenic not near genes chrX_4_15270001 chrX_15270001 S3 1782 chrX 16936001 16936028 chrX 16936442 16936471 jockey 6 443 0.5 2.0 1.2 2.7 470 chrX 16936001 intron CG4928 + chrX 16936236 intron CG4928 + chrX 16936471 intron CG4928 + chrX_6_16935001 chrX_16935001 S3 1785 chrX 17195180 17195228 chrX 17200291 17200329 flea 4 5108 2.5 0.0 1.2 1.8 5149 chrX 17195180 3` UTR baz + chrX 17197754 3` UTR baz + chrX 17200329 3` UTR baz + chrX_4_17195001 chrX_17195001 S3 1787 chrX 18194044 18194099 chrX 18194604 18194657 BS 5 559 1.0 1.0 1.0 2.5 613 chrX 18194044 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194657 intron Frq2 + chrX_5_18190001 chrX_18190001 S3 1789 chrX 18429470 18429518 chrX 18434806 18434854 Transpac 6 5335 0.5 2.0 1.2 2.7 5384 chrX 18429470 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434854 intergenic not near genes chrX_6_18430001 chrX_18430001 S3 1792 chrX 18754313 18754335 chrX 18758005 18758027 297 4 3692 2.5 0.5 1.5 1.6 3714 chrX 18754313 intergenic not near genes chrX 18756170 intergenic not near genes chrX 18758027 intergenic not near genes chrX_4_18755001 chrX_18755001 S3 1795 chrX 19136531 19136581 chrX 19143476 19143525 412 5 6942 1.0 2.5 1.8 1.8 6994 chrX 19136531 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143525 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 S3 1798 chrX 19710067 19710097 chrX 19711878 19711908 S-element 5 1810 2.0 2.0 2.0 1.7 1841 chrX 19710067 intron meso18E - chrX 19710988 intron meso18E - chrX 19711908 intron meso18E - chrX_5_19710001 chrX_19710001 S3 1807 chrX 20940706 20940743 chrX 20942200 20942231 hobo 5 1493 0.0 0.5 0.2 4.2 1525 chrX 20940706 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942231 intergenic not near genes chrX_5_20940001 chrX_20940001 S3 1808 chrX 22996293 22996327 chrX 23003552 23003585 roo 5 7259 3.0 2.0 2.5 1.4 7292 chrX 22996293 intron,intron stnA -,stnB - chrX 22999939 intron,intron stnA -,stnB - chrX 23003585 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 S3