SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47448	47481	chr2L	52578	52610	jockey	4	5129	2.5	3.0	2.8	1.1	5162	chr2L	47448	intron	Cda5 -	chr2L	50029	intron	Cda5 -	chr2L	52610	intron	Cda5 -	chr2L_4_50001	chr2L_50001	S2R+
2	chr2L	325113	325144	chr2L	325215	325244		5	101	2.0	3.0	2.5	1.4	131	chr2L	325113	intron	Plc21C +	chr2L	325178	intron	Plc21C +	chr2L	325244	intron	Plc21C +	chr2L_5_325001	chr2L_325001	S2R+
3	chr2L	371432	371450	chr2L	371536	371552		4	103	1.5	1.0	1.2	1.8	120	chr2L	371432	intergenic	not near genes	chr2L	371492	intergenic	not near genes	chr2L	371552	intergenic	not near genes	chr2L_4_370001	chr2L_370001	S2R+
4	chr2L	467344	467358	chr2L	467468	467482		6	124	4.0	2.5	3.2	1.4	138	chr2L	467344	intron	CG4297 -	chr2L	467413	intron	CG4297 -	chr2L	467482	intron	CG4297 -	chr2L_6_465001	chr2L_465001	S2R+
5	chr2L	440669	440718	chr2L	503390	503441		5	62720	9.0	21.0	15.0	0.3	62772	chr2L	440669	intron	ex +	chr2L	472055	intron	CG4297 -	chr2L	503441	intron	ush +	chr2L_5_470001	chr2L_470001	S2R+
6	chr2L	764529	764577	chr2L	764654	764700		4	124	1.0	0.5	0.8	2.2	171	chr2L	764529	intergenic	not near genes	chr2L	764614	intergenic	not near genes	chr2L	764700	intergenic	not near genes	chr2L_4_760001	chr2L_760001	S2R+
7	chr2L	770456	770487	chr2L	772262	772292	Bari1	4	1806	3.5	3.5	3.5	0.9	1836	chr2L	770456	intergenic	not near genes	chr2L	771374	intergenic	not near genes	chr2L	772292	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	S2R+
8	chr2L	877829	877878	chr2L	877935	877982		4	106	2.5	0.5	1.5	1.6	153	chr2L	877829	3` UTR,exon	CG15824 -,ninaA +	chr2L	877906	3` UTR,intron	CG15824 -,ninaA +	chr2L	877982	3` UTR,exon	CG15824 -,ninaA +	chr2L_4_875001	chr2L_875001	S2R+
9	chr2L	1028835	1028870	chr2L	1028945	1028995		7	120	3.0	0.0	1.5	2.8	160	chr2L	1028835	intron	IA-2 -	chr2L	1028915	intron	IA-2 -	chr2L	1028995	intron	IA-2 -	chr2L_7_1025001	chr2L_1025001	S2R+
10	chr2L	1134353	1134384	chr2L	1134493	1134505		4	135	4.0	5.5	4.8	0.7	152	chr2L	1134353	intergenic	Iris -,CG4577 +	chr2L	1134429	intergenic	CG4577 +,Iris -	chr2L	1134505	intergenic	CG4577 +,Iris -	chr2L_4_1130001	chr2L_1130001	S2R+
11	chr2L	1156466	1156506	chr2L	1156713	1156753		5	247	6.5	5.0	5.8	0.7	287	chr2L	1156466	intron	capt -	chr2L	1156610	intron	capt -	chr2L	1156753	intron	capt -	chr2L_5_1155001	chr2L_1155001	S2R+
12	chr2L	1157626	1157666	chr2L	1159312	1159352		12	1687	22.0	29.0	25.5	0.5	1726	chr2L	1157626	intron	capt -	chr2L	1158489	intergenic	CR43767 -,Tango14 +,capt -	chr2L	1159352	3` UTR,exon	CR43767 -,Tango14 +	chr2L_12_1155001	chr2L_1155001	S2R+
13	chr2L	1182443	1182498	chr2L	1190131	1190183		4	7687	6.5	4.0	5.2	0.6	7740	chr2L	1182443	3` UTR,3` UTR	CG4896 +,CG5126 -	chr2L	1186313	intron	CG5001 +	chr2L	1190183	intron	CG5001 +	chr2L_4_1185001	chr2L_1185001	S2R+
14	chr2L	1261133	1261229	chr2L	1261240	1261335		4	104	0.0	0.0	0.0	4.0	202	chr2L	1261133	intron	robo3 +	chr2L	1261234	intron	robo3 +	chr2L	1261335	intron	robo3 +	chr2L_4_1260001	chr2L_1260001	S2R+
15	chr2L	1536500	1536523	chr2L	1536657	1536680		5	157	0.0	3.0	1.5	2.0	180	chr2L	1536500	intergenic	not near genes	chr2L	1536590	intergenic	not near genes	chr2L	1536680	intergenic	not near genes	chr2L_5_1535001	chr2L_1535001	S2R+
16	chr2L	1564435	1564489	chr2L	1564547	1564601		8	112	0.5	2.5	1.5	3.2	166	chr2L	1564435	intron	haf +	chr2L	1564518	intron	haf +	chr2L	1564601	intron	haf +	chr2L_8_1560001	chr2L_1560001	S2R+
17	chr2L	1570687	1570714	chr2L	1573584	1573610	F-element	4	2896	1.5	4.5	3.0	1.0	2923	chr2L	1570687	intron	haf +	chr2L	1572148	intron	haf +	chr2L	1573610	intron	haf +	chr2L_4_1570001	chr2L_1570001	S2R+
18	chr2L	1711335	1711386	chr2L	1711684	1711735	mdg3	8	347	3.5	1.0	2.2	2.5	400	chr2L	1711335	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711735	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	S2R+
19	chr2L	1883393	1883417	chr2L	1883999	1884024		4	607	0.5	0.5	0.5	2.7	631	chr2L	1883393	intron	CG15358 -	chr2L	1883708	intron	CG15358 -	chr2L	1884024	exon	CG15358 -	chr2L_4_1880001	chr2L_1880001	S2R+
20	chr2L	2004823	2004874	chr2L	2005291	2005342		6	468	0.5	0.5	0.5	4.0	519	chr2L	2004823	intron	CG33543 -	chr2L	2005082	intron	CG33543 -	chr2L	2005342	intron	CG33543 -	chr2L_6_2005001	chr2L_2005001	S2R+
21	chr2L	2112091	2112146	chr2L	2119773	2119826	opus	13	7686	2.0	3.0	2.5	3.7	7735	chr2L	2112091	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119826	intergenic	not near genes	chr2L_13_2115001	chr2L_2115001	S2R+
22	chr2L	2256450	2256467	chr2L	2256555	2256571		4	104	1.5	3.0	2.2	1.2	121	chr2L	2256450	intergenic	not near genes	chr2L	2256510	intergenic	not near genes	chr2L	2256571	intergenic	not near genes	chr2L_4_2255001	chr2L_2255001	S2R+
23	chr2L	2260785	2260829	chr2L	2260896	2260940		7	111	2.0	2.0	2.0	2.3	155	chr2L	2260785	intergenic	not near genes	chr2L	2260862	intergenic	not near genes	chr2L	2260940	intergenic	not near genes	chr2L_7_2260001	chr2L_2260001	S2R+
24	chr2L	2294030	2294072	chr2L	2299258	2299302	copia	10	5227	0.5	0.5	0.5	6.7	5272	chr2L	2294030	intergenic	not near genes	chr2L	2296666	intergenic	not near genes	chr2L	2299302	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	S2R+
25	chr2L	2587800	2587843	chr2L	2587904	2587933		4	100	4.0	1.0	2.5	1.1	133	chr2L	2587800	intergenic	not near genes	chr2L	2587866	intergenic	not near genes	chr2L	2587933	intergenic	not near genes	chr2L_4_2585001	chr2L_2585001	S2R+
26	chr2L	2618013	2618068	chr2L	2618117	2618171		5	103	0.5	0.0	0.2	4.2	158	chr2L	2618013	intergenic	not near genes	chr2L	2618092	intergenic	not near genes	chr2L	2618171	intergenic	not near genes	chr2L_5_2615001	chr2L_2615001	S2R+
27	chr2L	2618329	2618350	chr2L	2618453	2618474		4	124	3.5	2.0	2.8	1.1	145	chr2L	2618329	intergenic	not near genes	chr2L	2618402	intergenic	not near genes	chr2L	2618474	intergenic	not near genes	chr2L_4_2615001	chr2L_2615001	S2R+
28	chr2L	2661188	2661228	chr2L	2663050	2663084	I-element	4	1858	0.5	1.5	1.0	2.0	1896	chr2L	2661188	intergenic	not near genes	chr2L	2662136	intergenic	not near genes	chr2L	2663084	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	S2R+
29	chr2L	3044885	3044926	chr2L	3045007	3045048		7	121	1.5	2.0	1.8	2.5	163	chr2L	3044885	intron	v(2)k05816 +	chr2L	3044966	intron	v(2)k05816 +	chr2L	3045048	intron	v(2)k05816 +	chr2L_7_3040001	chr2L_3040001	S2R+
30	chr2L	3073013	3073060	chr2L	3078241	3078288	copia	4	5228	1.5	2.0	1.8	1.4	5275	chr2L	3073013	intron	toc -	chr2L	3075650	intron	toc -	chr2L	3078288	intron	toc -	chr2L_4_3075001	chr2L_3075001	S2R+
31	chr2L	3087360	3087413	chr2L	3087493	3087540		4	130	0.5	0.0	0.2	3.3	180	chr2L	3087360	intron	toc -	chr2L	3087450	intron	toc -	chr2L	3087540	intron	toc -	chr2L_4_3085001	chr2L_3085001	S2R+
32	chr2L	3191427	3191458	chr2L	3191548	3191578		5	121	0.5	1.0	0.8	2.8	151	chr2L	3191427	intron	CG34393 -	chr2L	3191502	intron	CG34393 -	chr2L	3191578	intron	CG34393 -	chr2L_5_3190001	chr2L_3190001	S2R+
33	chr2L	3193815	3193830	chr2L	3193924	3193941		4	110	1.5	1.0	1.2	1.8	126	chr2L	3193815	intron	CG34393 -	chr2L	3193878	intron	CG34393 -	chr2L	3193941	intron	CG34393 -	chr2L_4_3190001	chr2L_3190001	S2R+
34	chr2L	3261489	3261509	chr2L	3261606	3261626		5	117	0.0	1.0	0.5	3.3	137	chr2L	3261489	intergenic	CR45338 -,CR45337 -	chr2L	3261558	intergenic	CR45338 -,CR45337 -	chr2L	3261626	intergenic	CR45338 -,CR45337 -	chr2L_5_3260001	chr2L_3260001	S2R+
35	chr2L	3523010	3523052	chr2L	3523148	3523189		5	137	1.0	0.0	0.5	3.3	179	chr2L	3523010	exon	Sr-CIV -	chr2L	3523100	intron	Sr-CIV -	chr2L	3523189	exon	Sr-CIV -	chr2L_5_3520001	chr2L_3520001	S2R+
36	chr2L	3734641	3734682	chr2L	3734743	3734784		4	102	0.0	0.5	0.2	3.3	143	chr2L	3734641	intron	CG10019 +	chr2L	3734712	intron	CG10019 +	chr2L	3734784	intron	CG10019 +	chr2L_4_3730001	chr2L_3730001	S2R+
37	chr2L	4066026	4066039	chr2L	4068876	4068888	Juan	4	2850	1.5	0.0	0.8	2.2	2862	chr2L	4066026	intron	ed +	chr2L	4067457	intron	ed +	chr2L	4068888	intron	ed +	chr2L_4_4065001	chr2L_4065001	S2R+
38	chr2L	4136377	4136409	chr2L	4136489	4136521		6	112	1.5	1.0	1.2	2.7	144	chr2L	4136377	intergenic	not near genes	chr2L	4136449	intergenic	not near genes	chr2L	4136521	intergenic	not near genes	chr2L_6_4135001	chr2L_4135001	S2R+
39	chr2L	4166364	4166407	chr2L	4166472	4166515		4	108	1.0	1.0	1.0	2.0	151	chr2L	4166364	intergenic	Or24a -	chr2L	4166440	intergenic	Or24a -	chr2L	4166515	intergenic	Or24a -	chr2L_4_4165001	chr2L_4165001	S2R+
40	chr2L	5902604	5902632	chr2L	5902706	5902732		10	101	6.5	10.0	8.2	1.1	128	chr2L	5902604	intergenic	not near genes	chr2L	5902668	intergenic	not near genes	chr2L	5902732	intergenic	CG9021 -	chr2L_10_5900001	chr2L_5900001	S2R+
41	chr2L	6283937	6283978	chr2L	6284073	6284112		4	135	0.0	0.5	0.2	3.3	175	chr2L	6283937	intron	Ddr +	chr2L	6284024	intron	Ddr +	chr2L	6284112	intron	Ddr +	chr2L_4_6280001	chr2L_6280001	S2R+
42	chr2L	6363127	6363178	chr2L	6366078	6366129	Burdock	6	2951	0.0	1.5	0.8	3.3	3002	chr2L	6363127	intergenic	not near genes	chr2L	6364628	intergenic	not near genes	chr2L	6366129	intergenic	not near genes	chr2L_6_6360001	chr2L_6360001	S2R+
43	chr2L	6626877	6626915	chr2L	6626987	6627025		5	109	1.0	4.0	2.5	1.4	148	chr2L	6626877	intron	Oatp26F -	chr2L	6626951	intron	Oatp26F -	chr2L	6627025	intron	Oatp26F -	chr2L_5_6625001	chr2L_6625001	S2R+
44	chr2L	6655501	6655540	chr2L	6655888	6655916		5	385	1.5	0.5	1.0	2.5	415	chr2L	6655501	exon	CG31633 -	chr2L	6655708	exon	CG31633 -	chr2L	6655916	exon	CG31633 -	chr2L_5_6655001	chr2L_6655001	S2R+
45	chr2L	6950135	6950190	chr2L	6950363	6950406		7	227	1.0	0.5	0.8	3.9	271	chr2L	6950135	5` UTR	Gas41 -	chr2L	6950270	intergenic	Gas41 -,SA +	chr2L	6950406	intergenic	SA +,Gas41 -	chr2L_7_6950001	chr2L_6950001	S2R+
46	chr2L	7156263	7156291	chr2L	7156365	7156393		7	100	5.0	2.0	3.5	1.6	130	chr2L	7156263	exon	Pvf3 -	chr2L	7156328	exon	Pvf3 -	chr2L	7156393	exon	Pvf3 -	chr2L_7_7155001	chr2L_7155001	S2R+
47	chr2L	7295975	7296006	chr2L	7296138	7296170		4	164	2.0	1.0	1.5	1.6	195	chr2L	7295975	intergenic	not near genes	chr2L	7296072	intergenic	not near genes	chr2L	7296170	intergenic	not near genes	chr2L_4_7295001	chr2L_7295001	S2R+
48	chr2L	7325895	7325937	chr2L	7326005	7326047		4	110	2.0	1.5	1.8	1.4	152	chr2L	7325895	intergenic	not near genes	chr2L	7325971	intergenic	not near genes	chr2L	7326047	intergenic	not near genes	chr2L_4_7325001	chr2L_7325001	S2R+
49	chr2L	7343310	7343354	chr2L	7350451	7350495	roo	6	7141	2.5	1.5	2.0	2.0	7185	chr2L	7343310	intron	Wnt6 +	chr2L	7346902	intron	Wnt6 +	chr2L	7350495	intron	Wnt6 +	chr2L_6_7345001	chr2L_7345001	S2R+
50	chr2L	7436188	7436219	chr2L	7436301	7436332		4	113	0.0	0.0	0.0	4.0	144	chr2L	7436188	intergenic	not near genes	chr2L	7436260	intergenic	not near genes	chr2L	7436332	intergenic	not near genes	chr2L_4_7435001	chr2L_7435001	S2R+
51	chr2L	7941177	7941190	chr2L	7941278	7941292		5	103	2.5	4.0	3.2	1.2	115	chr2L	7941177	intron	Snoo -	chr2L	7941234	intron	Snoo -	chr2L	7941292	intron	Snoo -	chr2L_5_7940001	chr2L_7940001	S2R+
52	chr2L	7959025	7959071	chr2L	7960461	7960508	pogo	4	1436	0.0	0.5	0.2	3.3	1483	chr2L	7959025	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960508	intron	Snoo -	chr2L_4_7955001	chr2L_7955001	S2R+
53	chr2L	7977075	7977112	chr2L	7984076	7984113	297	5	6999	3.0	2.0	2.5	1.4	7038	chr2L	7977075	intron	Snoo -	chr2L	7980594	intron	Snoo -	chr2L	7984113	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	S2R+
54	chr2L	8044078	8044115	chr2L	8044178	8044219		4	100	3.0	2.5	2.8	1.1	141	chr2L	8044078	intron	CG7466 +	chr2L	8044148	intron	CG7466 +	chr2L	8044219	intron	CG7466 +	chr2L_4_8040001	chr2L_8040001	S2R+
55	chr2L	8349583	8349619	chr2L	8349713	8349749		10	130	4.0	2.0	3.0	2.5	166	chr2L	8349583	exon	CG7778 +	chr2L	8349666	intron	CG7778 +	chr2L	8349749	exon	CG7778 +	chr2L_10_8345001	chr2L_8345001	S2R+
56	chr2L	8452400	8452441	chr2L	8461596	8461637	roo	5	9196	1.5	1.0	1.2	2.3	9237	chr2L	8452400	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461637	intron	fu12 -	chr2L_5_8455001	chr2L_8455001	S2R+
57	chr2L	8578452	8578452	chr2L	16071771	16071771		4	7493319	12.0	10.5	11.2	0.3	7493319	chr2L	8578452	intron	Sema-1a +	chr2L	12325112	intergenic	not near genes	chr2L	16071771	intron	beat-Ia +	chr2L_4_12325001	chr2L_12325001	S2R+
58	chr2L	8588483	8588519	chr2L	8588845	8588882		5	362	0.5	0.5	0.5	3.3	399	chr2L	8588483	intron	Sema-1a +	chr2L	8588682	intron	Sema-1a +	chr2L	8588882	intron	Sema-1a +	chr2L_5_8585001	chr2L_8585001	S2R+
59	chr2L	8604944	8604998	chr2L	8605064	8605119		7	121	2.5	1.0	1.8	2.5	175	chr2L	8604944	intron	Sema-1a +	chr2L	8605032	intron	Sema-1a +	chr2L	8605119	intron	Sema-1a +	chr2L_7_8605001	chr2L_8605001	S2R+
60	chr2L	8689678	8689731	chr2L	8689800	8689853		10	122	4.5	2.0	3.2	2.4	175	chr2L	8689678	intron	Hnf4 -	chr2L	8689766	intron	Hnf4 -	chr2L	8689853	exon	Hnf4 -	chr2L_10_8685001	chr2L_8685001	S2R+
61	chr2L	8698306	8698347	chr2L	8698470	8698511		5	164	1.5	0.0	0.8	2.8	205	chr2L	8698306	intron	Hnf4 -	chr2L	8698408	intron	Hnf4 -	chr2L	8698511	intron	Hnf4 -	chr2L_5_8695001	chr2L_8695001	S2R+
62	chr2L	8723095	8723135	chr2L	8731494	8731537	Tirant	7	8401	2.5	1.0	1.8	2.5	8442	chr2L	8723095	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731537	intron	raw -	chr2L_7_8725001	chr2L_8725001	S2R+
63	chr2L	8799779	8799806	chr2L	8799920	8799945		4	140	1.0	0.5	0.8	2.2	166	chr2L	8799779	intergenic	not near genes	chr2L	8799862	intergenic	not near genes	chr2L	8799945	intergenic	not near genes	chr2L_4_8795001	chr2L_8795001	S2R+
64	chr2L	8811815	8811873	chr2L	8811920	8811975		4	104	0.5	2.0	1.2	1.8	160	chr2L	8811815	intergenic	not near genes	chr2L	8811895	intergenic	not near genes	chr2L	8811975	intergenic	not near genes	chr2L_4_8810001	chr2L_8810001	S2R+
65	chr2L	8910698	8910735	chr2L	8910813	8910851		4	116	2.5	0.5	1.5	1.6	153	chr2L	8910698	intron	CG34398 +	chr2L	8910774	intron	CG34398 +	chr2L	8910851	intron	CG34398 +	chr2L_4_8910001	chr2L_8910001	S2R+
66	chr2L	8956210	8956240	chr2L	8956312	8956329		4	99	0.5	0.0	0.2	3.3	119	chr2L	8956210	intron	CG31886 -	chr2L	8956270	intron	CG31886 -	chr2L	8956329	intron	CG31886 -	chr2L_4_8955001	chr2L_8955001	S2R+
67	chr2L	9084336	9084340	chr2L	16217660	16217660		17	7133322	6.0	4.5	5.2	2.7	7133324	chr2L	9084336	intron	Toll-4 +	chr2L	12650998	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_17_12650001	chr2L_12650001	S2R+
68	chr2L	9251126	9251160	chr2L	9251246	9251282		4	120	3.0	0.5	1.8	1.4	156	chr2L	9251126	intergenic	aust -,borr -	chr2L	9251204	intergenic	aust -,borr -	chr2L	9251282	intergenic	borr -,aust -	chr2L_4_9250001	chr2L_9250001	S2R+
69	chr2L	9259201	9259241	chr2L	9259311	9259359		4	116	1.5	1.5	1.5	1.6	158	chr2L	9259201	intron	Ggamma30A +	chr2L	9259280	intron	Ggamma30A +	chr2L	9259359	intron	Ggamma30A +	chr2L_4_9255001	chr2L_9255001	S2R+
70	chr2L	9357232	9357271	chr2L	9357338	9357375		5	105	1.5	0.0	0.8	2.8	143	chr2L	9357232	intergenic	not near genes	chr2L	9357304	intergenic	not near genes	chr2L	9357375	intergenic	not near genes	chr2L_5_9355001	chr2L_9355001	S2R+
71	chr2L	9393476	9393523	chr2L	9396466	9396515	jockey	9	2991	1.5	1.5	1.5	3.6	3039	chr2L	9393476	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396515	intron	Shawl -	chr2L_9_9390001	chr2L_9390001	S2R+
72	chr2L	9412113	9412147	chr2L	9412238	9412265		4	120	2.0	0.5	1.2	1.8	152	chr2L	9412113	intron	Shawl -	chr2L	9412189	intron	Shawl -	chr2L	9412265	intron	Shawl -	chr2L_4_9410001	chr2L_9410001	S2R+
73	chr2L	9438572	9438610	chr2L	9438707	9438744		6	134	0.5	0.0	0.2	5.0	172	chr2L	9438572	intron	numb +	chr2L	9438658	intron	numb +	chr2L	9438744	intron	numb +	chr2L_6_9435001	chr2L_9435001	S2R+
74	chr2L	9493225	9493273	chr2L	9493334	9493382		4	108	2.0	2.0	2.0	1.3	157	chr2L	9493225	intron	Gdi -	chr2L	9493304	intron	Gdi -	chr2L	9493382	intron	Gdi -	chr2L_4_9490001	chr2L_9490001	S2R+
75	chr2L	9506419	9506453	chr2L	9506594	9506626		4	174	0.5	1.5	1.0	2.0	207	chr2L	9506419	intron	CG33298 +	chr2L	9506522	intron	CG33298 +	chr2L	9506626	intron	CG33298 +	chr2L_4_9505001	chr2L_9505001	S2R+
76	chr2L	9556877	9556924	chr2L	9556992	9557039		5	115	1.0	2.5	1.8	1.8	162	chr2L	9556877	intron	jp -	chr2L	9556958	intron	jp -	chr2L	9557039	intron	jp -	chr2L_5_9555001	chr2L_9555001	S2R+
77	chr2L	9593332	9593381	chr2L	9593439	9593488		7	106	0.5	0.5	0.5	4.7	156	chr2L	9593332	intergenic	not near genes	chr2L	9593410	intergenic	not near genes	chr2L	9593488	intergenic	not near genes	chr2L_7_9590001	chr2L_9590001	S2R+
78	chr2L	9618869	9618912	chr2L	9618970	9619014		6	102	1.0	1.0	1.0	3.0	145	chr2L	9618869	intron	GlcAT-S +	chr2L	9618942	intron	GlcAT-S +	chr2L	9619014	intron	GlcAT-S +	chr2L_6_9615001	chr2L_9615001	S2R+
79	chr2L	9973704	9973754	chr2L	9980848	9980898	HMS-Beagle	7	7143	2.5	3.5	3.0	1.8	7194	chr2L	9973704	intergenic	not near genes	chr2L	9977301	intergenic	not near genes	chr2L	9980898	intergenic	not near genes	chr2L_7_9975001	chr2L_9975001	S2R+
80	chr2L	10051703	10051752	chr2L	10051811	10051860		7	108	2.0	1.5	1.8	2.5	157	chr2L	10051703	5` UTR	CR44874 +	chr2L	10051782	5` UTR	CR44874 +	chr2L	10051860	5` UTR	CR44874 +	chr2L_7_10050001	chr2L_10050001	S2R+
81	chr2L	10105262	10105310	chr2L	10105361	10105407		6	99	3.5	3.0	3.2	1.4	145	chr2L	10105262	intron,intron	CG44153 -,CG34109 +	chr2L	10105334	intron,intron	CG44153 -,CG34109 +	chr2L	10105407	intron,intron	CG44153 -,CG34109 +	chr2L_6_10105001	chr2L_10105001	S2R+
82	chr2L	10156232	10156261	chr2L	10164107	10164134	blood	4	7874	1.0	1.5	1.2	1.8	7902	chr2L	10156232	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160183	intron	CG44153 -	chr2L	10164134	intron	CG44153 -	chr2L_4_10160001	chr2L_10160001	S2R+
83	chr2L	10563893	10563930	chr2L	10564011	10564047		6	117	0.5	0.5	0.5	4.0	154	chr2L	10563893	intron	Trim9 +	chr2L	10563970	intron	Trim9 +	chr2L	10564047	intron	Trim9 +	chr2L_6_10560001	chr2L_10560001	S2R+
84	chr2L	10572690	10572723	chr2L	10572796	10572829		5	106	2.0	1.5	1.8	1.8	139	chr2L	10572690	intron	Trim9 +	chr2L	10572760	intron	Trim9 +	chr2L	10572829	intron	Trim9 +	chr2L_5_10570001	chr2L_10570001	S2R+
85	chr2L	10785036	10785082	chr2L	10785136	10785181		17	101	2.5	4.0	3.2	4.0	145	chr2L	10785036	intron	CG31869 -	chr2L	10785108	intron	CG31869 -	chr2L	10785181	intron	CG31869 -	chr2L_17_10785001	chr2L_10785001	S2R+
86	chr2L	10791834	10791888	chr2L	10791939	10791974		7	101	2.5	0.0	1.2	3.2	140	chr2L	10791834	intron	CG31869 -	chr2L	10791904	intron	CG31869 -	chr2L	10791974	intron	CG31869 -	chr2L_7_10790001	chr2L_10790001	S2R+
87	chr2L	10862830	10862866	chr2L	10864467	10864496	Rt1c	5	1633	4.0	3.5	3.8	1.0	1666	chr2L	10862830	3` UTR	CR43807 -	chr2L	10863663	intron	CR43807 -	chr2L	10864496	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	S2R+
88	chr2L	10946932	10946972	chr2L	10956172	10956212	roo	5	9240	2.5	3.5	3.0	1.2	9280	chr2L	10946932	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956212	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	S2R+
89	chr2L	11224037	11224086	chr2L	11224172	11224222		5	135	1.5	0.0	0.8	2.8	185	chr2L	11224037	intron	ab +	chr2L	11224130	intron	ab +	chr2L	11224222	intron	ab +	chr2L_5_11220001	chr2L_11220001	S2R+
90	chr2L	11292353	11292402	chr2L	11292460	11292509		12	104	0.5	1.5	1.0	6.0	156	chr2L	11292353	intergenic	not near genes	chr2L	11292431	intergenic	not near genes	chr2L	11292509	intergenic	not near genes	chr2L_12_11290001	chr2L_11290001	S2R+
91	chr2L	11313083	11313119	chr2L	11313187	11313222		5	102	4.0	0.5	2.2	1.6	139	chr2L	11313083	intergenic	not near genes	chr2L	11313152	intergenic	not near genes	chr2L	11313222	intergenic	not near genes	chr2L_5_11310001	chr2L_11310001	S2R+
92	chr2L	11418639	11418683	chr2L	11418742	11418787		7	104	2.5	0.5	1.5	2.8	148	chr2L	11418639	intergenic	not near genes	chr2L	11418713	intergenic	not near genes	chr2L	11418787	intergenic	not near genes	chr2L_7_11415001	chr2L_11415001	S2R+
93	chr2L	11713495	11713539	chr2L	11720988	11721032	blood	5	7493	0.5	0.0	0.2	4.2	7537	chr2L	11713495	intergenic	not near genes	chr2L	11717264	intergenic	not near genes	chr2L	11721032	intergenic	CR44143 +	chr2L_5_11715001	chr2L_11715001	S2R+
94	chr2L	11736516	11736568	chr2L	11736622	11736674		7	106	0.5	2.5	1.5	2.8	158	chr2L	11736516	5` UTR	CR44145 +	chr2L	11736595	5` UTR	CR44145 +	chr2L	11736674	5` UTR	CR44145 +	chr2L_7_11735001	chr2L_11735001	S2R+
95	chr2L	11845779	11845827	chr2L	11845933	11845962		5	150	6.0	4.0	5.0	0.8	183	chr2L	11845779	intron	Pde1c -	chr2L	11845870	intron	Pde1c -	chr2L	11845962	intron	Pde1c -	chr2L_5_11845001	chr2L_11845001	S2R+
96	chr2L	12033574	12033629	chr2L	12033678	12033733		9	104	0.5	4.0	2.2	2.8	159	chr2L	12033574	3` UTR	dmGlut +	chr2L	12033654	3` UTR	dmGlut +	chr2L	12033733	3` UTR	dmGlut +	chr2L_9_12030001	chr2L_12030001	S2R+
97	chr2L	12474924	12474965	chr2L	12475127	12475168		4	203	0.5	0.0	0.2	3.3	244	chr2L	12474924	intron	bun -	chr2L	12475046	intron	bun -	chr2L	12475168	intron	bun -	chr2L_4_12475001	chr2L_12475001	S2R+
98	chr2L	12647585	12647620	chr2L	12647726	12647760		8	141	0.0	1.5	0.8	4.4	175	chr2L	12647585	intergenic	not near genes	chr2L	12647672	intergenic	not near genes	chr2L	12647760	intergenic	not near genes	chr2L_8_12645001	chr2L_12645001	S2R+
99	chr2L	12728899	12728941	chr2L	12729164	12729206	pogo	8	264	0.5	1.0	0.8	4.4	307	chr2L	12728899	intron	MRP +	chr2L	12729052	intron	MRP +	chr2L	12729206	exon	MRP +	chr2L_8_12725001	chr2L_12725001	S2R+
100	chr2L	12739152	12739197	chr2L	12743958	12744002	Doc	6	4806	2.0	2.5	2.2	1.9	4850	chr2L	12739152	exon	MRP +	chr2L	12741577	intron	MRP +	chr2L	12744002	exon	MRP +	chr2L_6_12740001	chr2L_12740001	S2R+
101	chr2L	12748270	12748319	chr2L	12748373	12748422		8	103	2.5	2.0	2.2	2.5	152	chr2L	12748270	intergenic	not near genes	chr2L	12748346	intergenic	not near genes	chr2L	12748422	intergenic	not near genes	chr2L_8_12745001	chr2L_12745001	S2R+
102	chr2L	12751300	12751336	chr2L	12751407	12751441		4	107	0.5	1.5	1.0	2.0	141	chr2L	12751300	intergenic	not near genes	chr2L	12751370	intergenic	not near genes	chr2L	12751441	intergenic	not near genes	chr2L_4_12750001	chr2L_12750001	S2R+
103	chr2L	12763144	12763190	chr2L	12763257	12763306		10	115	1.0	0.5	0.8	5.6	162	chr2L	12763144	intergenic	not near genes	chr2L	12763225	intergenic	not near genes	chr2L	12763306	intergenic	not near genes	chr2L_10_12760001	chr2L_12760001	S2R+
104	chr2L	12781777	12781811	chr2L	12789245	12789278	Quasimodo	4	7468	1.5	2.5	2.0	1.3	7501	chr2L	12781777	intergenic	not near genes	chr2L	12785528	intergenic	not near genes	chr2L	12789278	intergenic	not near genes	chr2L_4_12785001	chr2L_12785001	S2R+
105	chr2L	12791581	12791627	chr2L	12795281	12795327	F-element	4	3698	0.0	0.0	0.0	4.0	3746	chr2L	12791581	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795327	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	S2R+
106	chr2L	12833054	12833073	chr2L	12833161	12833177		4	106	1.0	2.0	1.5	1.6	123	chr2L	12833054	intergenic	not near genes	chr2L	12833116	intergenic	not near genes	chr2L	12833177	intergenic	not near genes	chr2L_4_12830001	chr2L_12830001	S2R+
107	chr2L	12861688	12861726	chr2L	12863178	12863218	hobo	4	1490	2.0	2.5	2.2	1.2	1530	chr2L	12861688	intergenic	not near genes	chr2L	12862453	intergenic	not near genes	chr2L	12863218	intergenic	not near genes	chr2L_4_12860001	chr2L_12860001	S2R+
108	chr2L	12894020	12894045	chr2L	12895512	12895537	hobo	6	1492	3.5	1.0	2.2	1.9	1517	chr2L	12894020	intergenic	not near genes	chr2L	12894778	intergenic	not near genes	chr2L	12895537	intergenic	not near genes	chr2L_6_12890001	chr2L_12890001	S2R+
109	chr2L	12933832	12933870	chr2L	12941324	12941362	blood	8	7491	2.0	2.5	2.2	2.5	7530	chr2L	12933832	intergenic	not near genes	chr2L	12937597	intergenic	not near genes	chr2L	12941362	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	S2R+
110	chr2L	12963777	12963816	chr2L	12963904	12963943		4	127	2.5	1.0	1.8	1.4	166	chr2L	12963777	intergenic	not near genes	chr2L	12963860	intergenic	not near genes	chr2L	12963943	intergenic	not near genes	chr2L_4_12960001	chr2L_12960001	S2R+
111	chr2L	13093840	13093864	chr2L	13093943	13093967		4	103	0.5	3.0	1.8	1.4	127	chr2L	13093840	intergenic	not near genes	chr2L	13093904	intergenic	not near genes	chr2L	13093967	intergenic	not near genes	chr2L_4_13090001	chr2L_13090001	S2R+
112	chr2L	13255262	13255289	chr2L	13255429	13255457		4	168	0.0	4.0	2.0	1.3	195	chr2L	13255262	intron	CG31728 +	chr2L	13255360	intron	CG31728 +	chr2L	13255457	exon	CG31728 +	chr2L_4_13255001	chr2L_13255001	S2R+
113	chr2L	13405627	13405677	chr2L	13410449	13410498	Doc	5	4822	2.5	0.5	1.5	2.0	4871	chr2L	13405627	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410498	intron	CG7110 +	chr2L_5_13405001	chr2L_13405001	S2R+
114	chr2L	13481444	13481462	chr2L	13482076	13482094	jockey	4	632	1.5	5.5	3.5	0.9	650	chr2L	13481444	intron	CG42784 +	chr2L	13481769	intron	CG42784 +	chr2L	13482094	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	S2R+
115	chr2L	13605031	13605066	chr2L	13605133	13605164		5	96	1.5	2.5	2.0	1.7	133	chr2L	13605031	intron	kuz +	chr2L	13605098	intron	kuz +	chr2L	13605164	intron	kuz +	chr2L_5_13605001	chr2L_13605001	S2R+
116	chr2L	13622113	13622138	chr2L	13622237	13622259		4	123	3.0	1.5	2.2	1.2	146	chr2L	13622113	intron	kuz +	chr2L	13622186	intron	kuz +	chr2L	13622259	intron	kuz +	chr2L_4_13620001	chr2L_13620001	S2R+
117	chr2L	13701866	13701902	chr2L	13701969	13702007		5	104	0.5	1.0	0.8	2.8	141	chr2L	13701866	intron	CG31814 -	chr2L	13701936	intron	CG31814 -	chr2L	13702007	intron	CG31814 -	chr2L_5_13700001	chr2L_13700001	S2R+
118	chr2L	13713532	13713561	chr2L	13713633	13713662		4	101	0.0	0.0	0.0	4.0	130	chr2L	13713532	intron	CG31814 -	chr2L	13713597	intron	CG31814 -	chr2L	13713662	intron	CG31814 -	chr2L_4_13710001	chr2L_13710001	S2R+
119	chr2L	14000024	14000068	chr2L	14000136	14000180		5	111	1.5	1.0	1.2	2.3	156	chr2L	14000024	intron	rk -	chr2L	14000102	intron	rk -	chr2L	14000180	intron	rk -	chr2L_5_14000001	chr2L_14000001	S2R+
120	chr2L	14039899	14039953	chr2L	14042550	14042606		4	2652	8.0	6.0	7.0	0.5	2707	chr2L	14039899	intergenic	nAChRalpha5 +	chr2L	14041252	intron	nAChRalpha5 +	chr2L	14042606	intron	nAChRalpha5 +	chr2L_4_14040001	chr2L_14040001	S2R+
121	chr2L	14565854	14565894	chr2L	14565962	14566000		6	108	2.5	1.0	1.8	2.1	146	chr2L	14565854	intergenic	not near genes	chr2L	14565927	intergenic	not near genes	chr2L	14566000	intergenic	not near genes	chr2L_6_14565001	chr2L_14565001	S2R+
122	chr2L	14621374	14621403	chr2L	14621474	14621528		7	120	1.5	4.5	3.0	1.8	154	chr2L	14621374	intron	osp -	chr2L	14621451	intron	osp -	chr2L	14621528	intron	osp -	chr2L_7_14620001	chr2L_14620001	S2R+
123	chr2L	14642553	14642576	chr2L	14651741	14651762	roo	4	9188	3.0	3.0	3.0	1.0	9209	chr2L	14642553	intron	osp -	chr2L	14647158	intron	osp -	chr2L	14651762	intron	osp -	chr2L_4_14645001	chr2L_14645001	S2R+
124	chr2L	14681327	14681337	chr2L	14681500	14681510		5	173	1.0	2.0	1.5	2.0	183	chr2L	14681327	intron	osp -	chr2L	14681418	intron	osp -	chr2L	14681510	intron	osp -	chr2L_5_14680001	chr2L_14680001	S2R+
125	chr2L	14694235	14694272	chr2L	14694384	14694421		4	149	1.5	1.0	1.2	1.8	186	chr2L	14694235	intergenic	not near genes	chr2L	14694328	intergenic	not near genes	chr2L	14694421	intergenic	not near genes	chr2L_4_14690001	chr2L_14690001	S2R+
126	chr2L	14803857	14803909	chr2L	14809083	14809137	copia	8	5228	1.0	0.0	0.5	5.3	5280	chr2L	14803857	intergenic	not near genes	chr2L	14806497	intergenic	not near genes	chr2L	14809137	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	S2R+
127	chr2L	15956005	15956038	chr2L	15957497	15957530	hobo	4	1492	1.5	1.0	1.2	1.8	1525	chr2L	15956005	intron	beat-Ib -	chr2L	15956768	intron	beat-Ib -	chr2L	15957530	intron	beat-Ib -	chr2L_4_15955001	chr2L_15955001	S2R+
128	chr2L	16071771	16071771	chr2L	16217659	16217660	copia	17	145889	10.5	4.5	7.5	2.0	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_17_16140001	chr2L_16140001	S2R+
129	chr2L	16153713	16153766	chr2L	16160791	16160845	297	7	7078	1.5	0.5	1.0	3.5	7132	chr2L	16153713	intergenic	not near genes	chr2L	16157279	intergenic	not near genes	chr2L	16160845	intergenic	not near genes	chr2L_7_16155001	chr2L_16155001	S2R+
130	chr2L	9084337	9084340	chr2L	16217660	16217660		11	7133321	6.0	4.5	5.2	1.8	7133323	chr2L	9084337	intron	Toll-4 +	chr2L	12650998	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_11_12650001	chr2L_12650001	S2R+
131	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	10.5	4.5	7.5	0.9	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	S2R+
132	chr2L	16280259	16280279	chr2L	16281455	16281475	1360	4	1194	1.5	1.5	1.5	1.6	1216	chr2L	16280259	intron	crp -	chr2L	16280867	intron	crp -	chr2L	16281475	intron	crp -	chr2L_4_16280001	chr2L_16280001	S2R+
133	chr2L	16570831	16570862	chr2L	16570932	16570963		4	101	0.0	0.5	0.2	3.3	132	chr2L	16570831	intron	CG42389 +	chr2L	16570897	intron	CG42389 +	chr2L	16570963	intron	CG42389 +	chr2L_4_16570001	chr2L_16570001	S2R+
134	chr2L	16952665	16952714	chr2L	16952799	16952846		7	134	0.5	0.5	0.5	4.7	181	chr2L	16952665	intergenic	not near genes	chr2L	16952756	intergenic	not near genes	chr2L	16952846	intergenic	not near genes	chr2L_7_16950001	chr2L_16950001	S2R+
135	chr2L	17403425	17403473	chr2L	17403537	17403584		4	111	1.5	0.5	1.0	2.0	159	chr2L	17403425	intron	CLIP-190 +	chr2L	17403504	intron	CLIP-190 +	chr2L	17403584	intron	CLIP-190 +	chr2L_4_17400001	chr2L_17400001	S2R+
136	chr2L	17425749	17425789	chr2L	17425899	17425940		7	151	0.0	1.5	0.8	3.9	191	chr2L	17425749	intron	Dif -	chr2L	17425844	intron	Dif -	chr2L	17425940	intron	Dif -	chr2L_7_17425001	chr2L_17425001	S2R+
137	chr2L	17432920	17432942	chr2L	17433041	17433062		8	119	3.5	0.5	2.0	2.7	142	chr2L	17432920	5` UTR	Dif -	chr2L	17432991	5` UTR	Dif -	chr2L	17433062	5` UTR	Dif -	chr2L_8_17430001	chr2L_17430001	S2R+
138	chr2L	17338954	17338972	chr2L	17484050	17484068		7	145097	8.5	7.0	7.8	0.8	145114	chr2L	17338954	intergenic	not near genes	chr2L	17411511	exon	CG15141 +	chr2L	17484068	exon	CG6453 -	chr2L_7_17410001	chr2L_17410001	S2R+
139	chr2L	17647116	17647158	chr2L	17650180	17650224		4	3065	1.5	3.0	2.2	1.2	3108	chr2L	17647116	3` UTR	CadN -	chr2L	17648670	3` UTR	CadN -	chr2L	17650224	3` UTR	CadN -	chr2L_4_17645001	chr2L_17645001	S2R+
140	chr2L	17730977	17730989	chr2L	17731149	17731161		4	172	1.0	1.0	1.0	2.0	184	chr2L	17730977	intron	CadN -	chr2L	17731069	intron	CadN -	chr2L	17731161	intron	CadN -	chr2L_4_17730001	chr2L_17730001	S2R+
141	chr2L	17855478	17855495	chr2L	17855581	17855597		5	103	0.5	0.0	0.2	4.2	119	chr2L	17855478	intron	CadN2 -	chr2L	17855538	intron	CadN2 -	chr2L	17855597	intron	CadN2 -	chr2L_5_17855001	chr2L_17855001	S2R+
142	chr2L	18051858	18051895	chr2L	18061027	18061067	roo	5	9171	1.0	0.5	0.8	2.8	9209	chr2L	18051858	intron	rdo +	chr2L	18056462	intron	rdo +	chr2L	18061067	intron	rdo +	chr2L_5_18055001	chr2L_18055001	S2R+
143	chr2L	18449467	18449512	chr2L	18449579	18449624		4	112	0.5	1.5	1.0	2.0	157	chr2L	18449467	intergenic	bsf -	chr2L	18449546	3` UTR	bsf -	chr2L	18449624	3` UTR	bsf -	chr2L_4_18445001	chr2L_18445001	S2R+
144	chr2L	16217660	16217660	chr2L	18622718	18622718		5	2405058	4.5	7.0	5.8	0.7	2405058	chr2L	16217660	intergenic	not near genes	chr2L	17420189	intron	Dif -	chr2L	18622718	intron	MESR3 +	chr2L_5_17420001	chr2L_17420001	S2R+
145	chr2L	18629345	18629404	chr2L	18629454	18629513		8	108	2.0	0.5	1.2	3.6	168	chr2L	18629345	intron	MESR3 +	chr2L	18629429	intron	MESR3 +	chr2L	18629513	intron	MESR3 +	chr2L_8_18625001	chr2L_18625001	S2R+
146	chr2L	18981372	18981413	chr2L	18981480	18981521		5	108	1.0	1.5	1.2	2.3	149	chr2L	18981372	intron	Swip-1 -	chr2L	18981446	intron	Swip-1 -	chr2L	18981521	intron	Swip-1 -	chr2L_5_18980001	chr2L_18980001	S2R+
147	chr2L	18991076	18991104	chr2L	18992981	18993008		7	1904	0.5	2.5	1.5	2.8	1932	chr2L	18991076	exon	CG15169 +	chr2L	18992042	exon	CG15169 +	chr2L	18993008	intergenic	CG10650 -	chr2L_7_18990001	chr2L_18990001	S2R+
148	chr2L	19345016	19345032	chr2L	19357249	19357266	blood	4	12234	0.5	3.0	1.8	1.4	12250	chr2L	19345016	intron	dnt -	chr2L	19351141	intron	dnt -	chr2L	19357266	intron	dnt -	chr2L_4_19350001	chr2L_19350001	S2R+
149	chr2L	19469159	19469199	chr2L	19469269	19469309		5	109	3.5	2.0	2.8	1.3	150	chr2L	19469159	5` UTR	CR45722 +	chr2L	19469234	5` UTR	CR45722 +	chr2L	19469309	5` UTR	CR45722 +	chr2L_5_19465001	chr2L_19465001	S2R+
150	chr2L	19620075	19620128	chr2L	19621088	19621135	jockey	5	1012	3.0	0.5	1.8	1.8	1060	chr2L	19620075	intron	Lar +	chr2L	19620605	intron	Lar +	chr2L	19621135	intron	Lar +	chr2L_5_19620001	chr2L_19620001	S2R+
151	chr2L	19683211	19683256	chr2L	19683314	19683359		5	103	3.0	0.5	1.8	1.8	148	chr2L	19683211	intron	Lar +	chr2L	19683285	intron	Lar +	chr2L	19683359	intron	Lar +	chr2L_5_19680001	chr2L_19680001	S2R+
152	chr2L	19703523	19703565	chr2L	19712684	19712726	roo	5	9161	2.5	2.0	2.2	1.6	9203	chr2L	19703523	intron	Lar +	chr2L	19708124	intron	Lar +	chr2L	19712726	intron	Lar +	chr2L_5_19705001	chr2L_19705001	S2R+
153	chr2L	19737348	19737384	chr2L	19740842	19740878	1360	4	3494	1.0	3.0	2.0	1.3	3530	chr2L	19737348	intergenic	Nf-YB +	chr2L	19739113	intergenic	not near genes	chr2L	19740878	intergenic	not near genes	chr2L_4_19735001	chr2L_19735001	S2R+
154	chr2L	19773137	19773184	chr2L	19773249	19773296		4	112	0.0	0.5	0.2	3.3	159	chr2L	19773137	intergenic	not near genes	chr2L	19773216	intergenic	not near genes	chr2L	19773296	intergenic	not near genes	chr2L_4_19770001	chr2L_19770001	S2R+
155	chr2L	19911278	19911309	chr2L	19911391	19911420		6	110	1.5	1.0	1.2	2.7	142	chr2L	19911278	intron,3` UTR	sick +,CR43097 -	chr2L	19911349	intron,3` UTR	sick +,CR43097 -	chr2L	19911420	intron,3` UTR	sick +,CR43097 -	chr2L_6_19910001	chr2L_19910001	S2R+
156	chr2L	20336059	20336097	chr2L	20336167	20336205		5	109	1.0	0.0	0.5	3.3	146	chr2L	20336059	intron	spir +	chr2L	20336132	intron	spir +	chr2L	20336205	intron	spir +	chr2L_5_20335001	chr2L_20335001	S2R+
157	chr2L	20480515	20480537	chr2L	20480663	20480668		4	141	1.0	1.0	1.0	2.0	153	chr2L	20480515	intron	CR44980 -	chr2L	20480592	intron	CR44980 -	chr2L	20480668	intron	CR44980 -	chr2L_4_20480001	chr2L_20480001	S2R+
158	chr2L	20498672	20498706	chr2L	20498796	20498830		5	123	1.0	1.5	1.2	2.3	158	chr2L	20498672	intergenic	not near genes	chr2L	20498751	intergenic	not near genes	chr2L	20498830	intergenic	not near genes	chr2L_5_20495001	chr2L_20495001	S2R+
159	chr2L	20530753	20530802	chr2L	20530917	20530966		4	164	0.5	0.0	0.2	3.3	213	chr2L	20530753	intergenic	CG44270 +	chr2L	20530860	intergenic	CG44270 +	chr2L	20530966	intergenic	CG44270 +	chr2L_4_20530001	chr2L_20530001	S2R+
160	chr2L	20568649	20568669	chr2L	20569064	20569084	X-element	5	413	1.0	1.5	1.2	2.3	435	chr2L	20568649	intron	CR45347 +	chr2L	20568866	intron	CR45347 +	chr2L	20569084	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	S2R+
161	chr2L	20639479	20639517	chr2L	20639779	20639815	INE-1	4	300	1.5	0.0	0.8	2.2	336	chr2L	20639479	intergenic	not near genes	chr2L	20639647	intergenic	CG31680 +	chr2L	20639815	intergenic	CG31680 +	chr2L_4_20635001	chr2L_20635001	S2R+
162	chr2L	20643319	20643325	chr2L	20643475	20643482		5	156	0.0	0.5	0.2	4.2	163	chr2L	20643319	intergenic	phr6-4 -,CG17470 -	chr2L	20643400	3` UTR	phr6-4 -	chr2L	20643482	3` UTR	phr6-4 -	chr2L_5_20640001	chr2L_20640001	S2R+
163	chr2L	20668663	20668697	chr2L	20668764	20668798		4	101	1.0	1.0	1.0	2.0	135	chr2L	20668663	intron	CG31678 -	chr2L	20668730	intron	CG31678 -	chr2L	20668798	intron	CG31678 -	chr2L_4_20665001	chr2L_20665001	S2R+
164	chr2L	20846735	20846768	chr2L	20846844	20846877		4	108	1.0	1.0	1.0	2.0	142	chr2L	20846735	intron	CG31676 +	chr2L	20846806	intron	CG31676 +	chr2L	20846877	intron	CG31676 +	chr2L_4_20845001	chr2L_20845001	S2R+
165	chr2L	20881862	20881875	chr2L	20881977	20881982		4	114	3.0	2.0	2.5	1.1	120	chr2L	20881862	intron,intron	CG43739 -,sky -	chr2L	20881922	intron,intron	CG43739 -,sky -	chr2L	20881982	intron,intron	CG43739 -,sky -	chr2L_4_20880001	chr2L_20880001	S2R+
166	chr2L	20967069	20967103	chr2L	20967180	20967211		4	110	0.0	1.0	0.5	2.7	142	chr2L	20967069	3` UTR	CG42238 -	chr2L	20967140	3` UTR	CG42238 -	chr2L	20967211	3` UTR	CG42238 -	chr2L_4_20965001	chr2L_20965001	S2R+
167	chr2L	21088902	21088932	chr2L	21089010	21089040		5	107	1.0	1.5	1.2	2.3	138	chr2L	21088902	intergenic	ppk13 -,CG9259 +	chr2L	21088971	intergenic	ppk13 -,CG9259 +	chr2L	21089040	intergenic	ppk13 -,CG9259 +	chr2L_5_21085001	chr2L_21085001	S2R+
168	chr2L	21347535	21347580	chr2L	21355032	21355077	blood	5	7497	2.5	1.0	1.8	1.8	7542	chr2L	21347535	intron	Tsp39D +	chr2L	21351306	intron	Tsp39D +	chr2L	21355077	intron	Tsp39D +	chr2L_5_21350001	chr2L_21350001	S2R+
169	chr2L	21392186	21392233	chr2L	21392297	21392344		5	111	0.5	0.5	0.5	3.3	158	chr2L	21392186	3` UTR	nrv3 +	chr2L	21392265	3` UTR	nrv3 +	chr2L	21392344	3` UTR	nrv3 +	chr2L_5_21390001	chr2L_21390001	S2R+
170	chr2L	21750077	21750132	chr2L	21750422	21750480		4	346	1.0	1.0	1.0	2.0	403	chr2L	21750077	intron	step -	chr2L	21750278	intron	step -	chr2L	21750480	intron	step -	chr2L_4_21750001	chr2L_21750001	S2R+
171	chr2L	21771957	21771991	chr2L	21772061	21772095		4	104	1.0	1.5	1.2	1.8	138	chr2L	21771957	intron	CG31612 -	chr2L	21772026	intron	CG31612 -	chr2L	21772095	intron	CG31612 -	chr2L_4_21770001	chr2L_21770001	S2R+
172	chr2L	21819325	21819358	chr2L	21819438	21819470		5	113	2.5	5.0	3.8	1.0	145	chr2L	21819325	intergenic	CR44786 +	chr2L	21819398	intergenic	CR44786 +	chr2L	21819470	intergenic	CR44786 +	chr2L_5_21815001	chr2L_21815001	S2R+
173	chr2L	21824110	21824128	chr2L	21824222	21824240		5	112	0.0	2.5	1.2	2.3	130	chr2L	21824110	intergenic	not near genes	chr2L	21824175	intergenic	not near genes	chr2L	21824240	intergenic	not near genes	chr2L_5_21820001	chr2L_21820001	S2R+
174	chr2L	21869064	21869104	chr2L	21869178	21869211		12	111	8.0	12.0	10.0	1.1	147	chr2L	21869064	5` UTR	CR44917 +	chr2L	21869138	5` UTR	CR44917 +	chr2L	21869211	5` UTR	CR44917 +	chr2L_12_21865001	chr2L_21865001	S2R+
175	chr2L	21953795	21953843	chr2L	21954671	21954721		13	878	25.5	25.0	25.2	0.5	926	chr2L	21953795	intergenic	not near genes	chr2L	21954258	intergenic	not near genes	chr2L	21954721	intergenic	not near genes	chr2L_13_21950001	chr2L_21950001	S2R+
176	chr2L	21981661	21981708	chr2L	21990851	21990898	roo	8	9189	0.0	3.0	1.5	3.2	9237	chr2L	21981661	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990898	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	S2R+
177	chr2L	21996918	21996969	chr2L	21997022	21997074		4	105	1.0	1.0	1.0	2.0	156	chr2L	21996918	intergenic	not near genes	chr2L	21996996	intergenic	not near genes	chr2L	21997074	intergenic	not near genes	chr2L_4_21995001	chr2L_21995001	S2R+
178	chr2L	22027620	22027658	chr2L	22027790	22027828		6	170	4.0	6.5	5.2	1.0	208	chr2L	22027620	intergenic	not near genes	chr2L	22027724	intergenic	not near genes	chr2L	22027828	intergenic	not near genes	chr2L_6_22025001	chr2L_22025001	S2R+
179	chr2L	22212118	22212153	chr2L	22212690	22212725		4	572	0.0	0.5	0.2	3.3	607	chr2L	22212118	intron	Ir40a -	chr2L	22212422	intron	Ir40a -	chr2L	22212725	exon	Ir40a -	chr2L_4_22210001	chr2L_22210001	S2R+
180	chr2L	22215918	22215928	chr2L	22216028	22216039		5	111	1.0	3.0	2.0	1.7	121	chr2L	22215918	intergenic	not near genes	chr2L	22215978	intergenic	not near genes	chr2L	22216039	intergenic	not near genes	chr2L_5_22215001	chr2L_22215001	S2R+
181	chr2L	22239417	22239457	chr2L	22239523	22239563		5	106	4.0	4.0	4.0	1.0	146	chr2L	22239417	intron	CR43765 -	chr2L	22239490	3` UTR	CR43765 -	chr2L	22239563	3` UTR	CR43765 -	chr2L_5_22235001	chr2L_22235001	S2R+
182	chr2L	22258597	22258645	chr2L	22260746	22260794	G6	7	2147	2.0	5.0	3.5	1.6	2197	chr2L	22258597	intergenic	Tif-IA +	chr2L	22259696	intergenic	not near genes	chr2L	22260794	intergenic	not near genes	chr2L_7_22255001	chr2L_22255001	S2R+
183	chr2L	22581946	22582002	chr2L	22583760	22583816	S-element	6	1813	0.0	1.0	0.5	4.0	1870	chr2L	22581946	intron	CG17494 +	chr2L	22582881	intron	CG17494 +	chr2L	22583816	intron	CG17494 +	chr2L_6_22580001	chr2L_22580001	S2R+
184	chr2L	22706791	22706832	chr2L	22706919	22706960		4	128	0.5	1.5	1.0	2.0	169	chr2L	22706791	intron	CG40006 -	chr2L	22706876	intron	CG40006 -	chr2L	22706960	intron	CG40006 -	chr2L_4_22705001	chr2L_22705001	S2R+
185	chr2R	529317	529353	chr2R	537964	538003	Max-element	4	8649	1.0	1.0	1.0	2.0	8686	chr2R	529317	intron	CG40378 +	chr2R	533660	intron	CG40378 +	chr2R	538003	intron	CG40378 +	chr2R_4_530001	chr2R_530001	S2R+
186	chr2R	1516581	1516594	chr2R	1521334	1521347	1731	4	4753	5.5	4.5	5.0	0.7	4766	chr2R	1516581	exon	Maf1 -	chr2R	1518964	intron	Maf1 -	chr2R	1521347	5` UTR	Maf1 -	chr2R_4_1515001	chr2R_1515001	S2R+
187	chr2R	4247800	4247818	chr2R	4247911	4247925		12	105	9.5	11.5	10.5	1.0	125	chr2R	4247800	intergenic	not near genes	chr2R	4247862	intergenic	not near genes	chr2R	4247925	intergenic	not near genes	chr2R_12_4245001	chr2R_4245001	S2R+
188	chr2R	4265280	4265289	chr2R	4265388	4265397		4	107	6.0	2.5	4.2	0.8	117	chr2R	4265280	intergenic	not near genes	chr2R	4265338	intergenic	not near genes	chr2R	4265397	intergenic	not near genes	chr2R_4_4265001	chr2R_4265001	S2R+
189	chr2R	4580174	4580204	chr2R	4580826	4580856		5	651	1.5	0.0	0.8	2.8	682	chr2R	4580174	intergenic	not near genes	chr2R	4580515	intergenic	not near genes	chr2R	4580856	intergenic	not near genes	chr2R_5_4580001	chr2R_4580001	S2R+
190	chr2R	4622933	4622955	chr2R	4624117	4624139	1360	4	1182	1.5	1.5	1.5	1.6	1206	chr2R	4622933	intergenic	CR44101 -	chr2R	4623536	intergenic	not near genes	chr2R	4624139	intergenic	not near genes	chr2R_4_4620001	chr2R_4620001	S2R+
191	chr2R	4656757	4656796	chr2R	4656992	4657030		12	231	15.0	17.5	16.2	0.7	273	chr2R	4656757	intergenic	not near genes	chr2R	4656894	intergenic	not near genes	chr2R	4657030	intergenic	not near genes	chr2R_12_4655001	chr2R_4655001	S2R+
192	chr2R	4688110	4688132	chr2R	4688228	4688250		4	118	0.0	0.5	0.2	3.3	140	chr2R	4688110	intergenic	not near genes	chr2R	4688180	intergenic	not near genes	chr2R	4688250	intergenic	not near genes	chr2R_4_4685001	chr2R_4685001	S2R+
193	chr2R	4750338	4750357	chr2R	4751520	4751539	1360	4	1182	1.5	1.5	1.5	1.6	1201	chr2R	4750338	intron	conu +	chr2R	4750938	intron	conu +	chr2R	4751539	intron	conu +	chr2R_4_4750001	chr2R_4750001	S2R+
194	chr2R	4819819	4819846	chr2R	4819933	4819959		7	114	4.0	0.5	2.2	2.2	140	chr2R	4819819	exon	CG17528 -	chr2R	4819889	exon	CG17528 -	chr2R	4819959	intron	CG17528 -	chr2R_7_4815001	chr2R_4815001	S2R+
195	chr2R	4878556	4878579	chr2R	4878660	4878681		4	102	6.0	9.0	7.5	0.5	125	chr2R	4878556	intergenic	not near genes	chr2R	4878618	intergenic	not near genes	chr2R	4878681	intergenic	not near genes	chr2R_4_4875001	chr2R_4875001	S2R+
196	chr2R	5019257	5019297	chr2R	5019368	5019408		7	111	1.5	0.5	1.0	3.5	151	chr2R	5019257	intron	Ir41a +	chr2R	5019332	intron	Ir41a +	chr2R	5019408	intron	Ir41a +	chr2R_7_5015001	chr2R_5015001	S2R+
197	chr2R	5075254	5075357	chr2R	5075770	5075798		4	478	0.0	1.5	0.8	2.2	544	chr2R	5075254	intergenic	not near genes	chr2R	5075526	intergenic	not near genes	chr2R	5075798	intergenic	not near genes	chr2R_4_5075001	chr2R_5075001	S2R+
198	chr2R	5303472	5303509	chr2R	5303585	5303620		4	112	4.0	3.5	3.8	0.8	148	chr2R	5303472	intergenic	not near genes	chr2R	5303546	intergenic	not near genes	chr2R	5303620	intergenic	not near genes	chr2R_4_5300001	chr2R_5300001	S2R+
199	chr2R	5342810	5342859	chr2R	5342932	5342981		8	122	1.0	1.5	1.2	3.6	171	chr2R	5342810	intergenic	not near genes	chr2R	5342896	intergenic	not near genes	chr2R	5342981	intergenic	not near genes	chr2R_8_5340001	chr2R_5340001	S2R+
200	chr2R	5455762	5455799	chr2R	5455863	5455901		6	102	1.0	2.0	1.5	2.4	139	chr2R	5455762	3` UTR	laccase2 +	chr2R	5455832	3` UTR	laccase2 +	chr2R	5455901	3` UTR	laccase2 +	chr2R_6_5455001	chr2R_5455001	S2R+
201	chr2R	5491702	5491745	chr2R	5491868	5491911		5	166	0.5	1.0	0.8	2.8	209	chr2R	5491702	intron	CG30440 -	chr2R	5491806	intron	CG30440 -	chr2R	5491911	intron	CG30440 -	chr2R_5_5490001	chr2R_5490001	S2R+
202	chr2R	5710633	5710683	chr2R	5710735	5710785		8	101	2.5	5.0	3.8	1.7	152	chr2R	5710633	intron	ap -	chr2R	5710709	intron	ap -	chr2R	5710785	intron	ap -	chr2R_8_5710001	chr2R_5710001	S2R+
203	chr2R	5750425	5750454	chr2R	5750542	5750571		11	117	9.0	11.5	10.2	1.0	146	chr2R	5750425	intergenic	not near genes	chr2R	5750498	intergenic	not near genes	chr2R	5750571	intergenic	not near genes	chr2R_11_5750001	chr2R_5750001	S2R+
204	chr2R	5718808	5718840	chr2R	5752716	5752749		9	33907	43.5	35.5	39.5	0.2	33941	chr2R	5718808	intron	ap -	chr2R	5735778	intergenic	not near genes	chr2R	5752749	intergenic	not near genes	chr2R_9_5735001	chr2R_5735001	S2R+
205	chr2R	5772508	5772536	chr2R	5772627	5772655		5	118	3.0	3.5	3.2	1.2	147	chr2R	5772508	3` UTR	Gp210 +	chr2R	5772582	3` UTR	Gp210 +	chr2R	5772655	3` UTR	Gp210 +	chr2R_5_5770001	chr2R_5770001	S2R+
206	chr2R	5772823	5772857	chr2R	5772930	5772964		4	107	1.0	4.5	2.8	1.1	141	chr2R	5772823	3` UTR	Gp210 +	chr2R	5772894	3` UTR	Gp210 +	chr2R	5772964	3` UTR	Gp210 +	chr2R_4_5770001	chr2R_5770001	S2R+
207	chr2R	5790451	5790495	chr2R	5790561	5790604		6	110	2.0	0.0	1.0	3.0	153	chr2R	5790451	intergenic	not near genes	chr2R	5790528	intergenic	not near genes	chr2R	5790604	intergenic	not near genes	chr2R_6_5790001	chr2R_5790001	S2R+
208	chr2R	5859960	5860003	chr2R	5860096	5860140		7	136	3.0	1.5	2.2	2.2	180	chr2R	5859960	3` UTR	dpr12 +	chr2R	5860050	3` UTR	dpr12 +	chr2R	5860140	3` UTR	dpr12 +	chr2R_7_5860001	chr2R_5860001	S2R+
209	chr2R	5868049	5868088	chr2R	5868194	5868233		9	145	0.0	1.5	0.8	5.0	184	chr2R	5868049	intergenic	not near genes	chr2R	5868141	intergenic	not near genes	chr2R	5868233	intergenic	not near genes	chr2R_9_5865001	chr2R_5865001	S2R+
210	chr2R	5869259	5869293	chr2R	5874360	5874394	flea	6	5100	1.0	0.5	0.8	3.3	5135	chr2R	5869259	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874394	intergenic	not near genes	chr2R_6_5870001	chr2R_5870001	S2R+
211	chr2R	5885221	5885369	chr2R	5885327	5885523		5	117	0.0	0.0	0.0	5.0	302	chr2R	5885221	5` UTR	CR44125 +	chr2R	5885372	5` UTR	CR44125 +	chr2R	5885523	5` UTR	CR44125 +	chr2R_5_5885001	chr2R_5885001	S2R+
212	chr2R	6025003	6025186	chr2R	6025138	6025417		8	174	0.0	0.0	0.0	8.0	414	chr2R	6025003	intergenic	not near genes	chr2R	6025210	intergenic	not near genes	chr2R	6025417	intergenic	not near genes	chr2R_8_6025001	chr2R_6025001	S2R+
213	chr2R	6096698	6096750	chr2R	6101921	6101972	BS	8	5221	1.5	2.0	1.8	2.9	5274	chr2R	6096698	intron	EcR -	chr2R	6099335	intron	EcR -	chr2R	6101972	intron	EcR -	chr2R_8_6095001	chr2R_6095001	S2R+
214	chr2R	6129309	6129335	chr2R	6129412	6129438		7	103	3.0	1.0	2.0	2.3	129	chr2R	6129309	intron	EcR -	chr2R	6129374	intron	EcR -	chr2R	6129438	intron	EcR -	chr2R_7_6125001	chr2R_6125001	S2R+
215	chr2R	6691102	6691144	chr2R	6691206	6691247		4	103	1.0	1.5	1.2	1.8	145	chr2R	6691102	intron	CG9422 +	chr2R	6691174	intron	CG9422 +	chr2R	6691247	intron	CG9422 +	chr2R_4_6690001	chr2R_6690001	S2R+
216	chr2R	6696601	6696633	chr2R	6696709	6696741		5	107	5.0	5.0	5.0	0.8	140	chr2R	6696601	5` UTR	Mob4 -	chr2R	6696671	intergenic	Mob4 -,Rab2 +	chr2R	6696741	5` UTR	Rab2 +	chr2R_5_6695001	chr2R_6695001	S2R+
217	chr2R	6712563	6712601	chr2R	6712685	6712720		4	121	5.0	1.0	3.0	1.0	157	chr2R	6712563	intron,intron	CG3409 -,CG45092 -	chr2R	6712642	intron,intron	CG3409 -,CG45092 -	chr2R	6712720	intron,intron	CG3409 -,CG45092 -	chr2R_4_6710001	chr2R_6710001	S2R+
218	chr2R	6797057	6797102	chr2R	6797175	6797220		7	118	2.0	2.5	2.2	2.2	163	chr2R	6797057	5` UTR	Epac -	chr2R	6797138	5` UTR	Epac -	chr2R	6797220	5` UTR	Epac -	chr2R_7_6795001	chr2R_6795001	S2R+
219	chr2R	6801302	6801343	chr2R	6801404	6801445		10	102	4.0	2.0	3.0	2.5	143	chr2R	6801302	intergenic	not near genes	chr2R	6801374	intergenic	not near genes	chr2R	6801445	intergenic	not near genes	chr2R_10_6800001	chr2R_6800001	S2R+
220	chr2R	6890644	6890669	chr2R	6890763	6890788		4	119	3.0	3.5	3.2	1.0	144	chr2R	6890644	intergenic	not near genes	chr2R	6890716	intergenic	not near genes	chr2R	6890788	intergenic	not near genes	chr2R_4_6890001	chr2R_6890001	S2R+
221	chr2R	6961874	6961909	chr2R	6961984	6962019		4	108	1.5	1.5	1.5	1.6	145	chr2R	6961874	intron,intron	mim -,CheB42c -	chr2R	6961946	intron,intron	mim -,CheB42c -	chr2R	6962019	intron,intron	mim -,CheB42c -	chr2R_4_6960001	chr2R_6960001	S2R+
222	chr2R	7084868	7084899	chr2R	7159014	7159045		4	74145	12.0	13.0	12.5	0.3	74177	chr2R	7084868	intergenic	not near genes	chr2R	7121956	intron	esn +	chr2R	7159045	intron	pk +	chr2R_4_7120001	chr2R_7120001	S2R+
223	chr2R	7235810	7235835	chr2R	7240927	7240952	jockey	9	5115	2.0	0.5	1.2	4.1	5142	chr2R	7235810	intergenic	not near genes	chr2R	7238381	intergenic	not near genes	chr2R	7240952	intergenic	not near genes	chr2R_9_7235001	chr2R_7235001	S2R+
224	chr2R	7353368	7353409	chr2R	7353499	7353540		7	131	2.0	1.0	1.5	2.8	172	chr2R	7353368	intron	Dscam1 -	chr2R	7353454	intron	Dscam1 -	chr2R	7353540	intron	Dscam1 -	chr2R_7_7350001	chr2R_7350001	S2R+
225	chr2R	7417879	7418159	chr2R	7417990	7418263		6	106	0.0	1.0	0.5	4.0	384	chr2R	7417879	intergenic	not near genes	chr2R	7418071	intergenic	not near genes	chr2R	7418263	intergenic	not near genes	chr2R_6_7415001	chr2R_7415001	S2R+
226	chr2R	7473934	7473979	chr2R	7474031	7474068		7	98	2.0	1.5	1.8	2.5	134	chr2R	7473934	intron	Aldh-III -	chr2R	7474001	intron	Aldh-III -	chr2R	7474068	intron	Aldh-III -	chr2R_7_7470001	chr2R_7470001	S2R+
227	chr2R	7642847	7642883	chr2R	7642952	7642988		8	105	2.0	3.0	2.5	2.3	141	chr2R	7642847	intron	CG43340 +	chr2R	7642918	intron	CG43340 +	chr2R	7642988	intron	CG43340 +	chr2R_8_7640001	chr2R_7640001	S2R+
228	chr2R	7655430	7655451	chr2R	7655572	7655591		4	142	13.5	12.5	13.0	0.3	161	chr2R	7655430	exon	CG30491 +	chr2R	7655510	intron	CG30491 +	chr2R	7655591	exon	CG30491 +	chr2R_4_7655001	chr2R_7655001	S2R+
229	chr2R	7687124	7687159	chr2R	7687313	7687348		6	188	5.0	4.5	4.8	1.0	224	chr2R	7687124	intron	CG1399 -	chr2R	7687236	intron	CG1399 -	chr2R	7687348	intron	CG1399 -	chr2R_6_7685001	chr2R_7685001	S2R+
230	chr2R	7688172	7688218	chr2R	7688349	7688396		5	178	11.5	9.5	10.5	0.4	224	chr2R	7688172	intron	CG1399 -	chr2R	7688284	exon	CG1399 -	chr2R	7688396	intron	CG1399 -	chr2R_5_7685001	chr2R_7685001	S2R+
231	chr2R	7690640	7690670	chr2R	7690743	7690773		4	102	2.0	1.5	1.8	1.4	133	chr2R	7690640	intron	CG1399 -	chr2R	7690706	intron	CG1399 -	chr2R	7690773	intron	CG1399 -	chr2R_4_7690001	chr2R_7690001	S2R+
232	chr2R	7692017	7692030	chr2R	7692123	7692136		4	106	3.5	2.5	3.0	1.0	119	chr2R	7692017	intron	CG1399 -	chr2R	7692076	intron	CG1399 -	chr2R	7692136	intron	CG1399 -	chr2R_4_7690001	chr2R_7690001	S2R+
233	chr2R	7742602	7742634	chr2R	7742882	7742914		4	280	1.0	2.5	1.8	1.4	312	chr2R	7742602	intron,intron	CG30497 -,CG45093 -	chr2R	7742758	intron,intron	CG30497 -,CG45093 -	chr2R	7742914	intron,intron	CG30497 -,CG45093 -	chr2R_4_7740001	chr2R_7740001	S2R+
234	chr2R	7769723	7769768	chr2R	7769825	7769870		4	100	1.5	1.0	1.2	1.8	147	chr2R	7769723	intron,intron	CG30497 -,CG45093 -	chr2R	7769796	intron,intron	CG30497 -,CG45093 -	chr2R	7769870	intron,intron	CG30497 -,CG45093 -	chr2R_4_7765001	chr2R_7765001	S2R+
235	chr2R	7815658	7815694	chr2R	7822152	7822182	Burdock	10	6492	2.5	1.0	1.8	3.6	6524	chr2R	7815658	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822182	3` UTR	cathD -	chr2R_10_7815001	chr2R_7815001	S2R+
236	chr2R	7897136	7897147	chr2R	7897250	7897261		4	113	0.0	4.5	2.2	1.2	125	chr2R	7897136	intron	CG30377 +	chr2R	7897198	intron	CG30377 +	chr2R	7897261	intron	CG30377 +	chr2R_4_7895001	chr2R_7895001	S2R+
237	chr2R	8015630	8015676	chr2R	8017678	8017724		13	2046	3.0	4.5	3.8	2.7	2094	chr2R	8015630	intergenic	mir-4981 +	chr2R	8016677	intergenic	not near genes	chr2R	8017724	intergenic	not near genes	chr2R_13_8015001	chr2R_8015001	S2R+
238	chr2R	8089232	8089283	chr2R	8089342	8089394		7	111	0.0	2.5	1.2	3.2	162	chr2R	8089232	3` UTR	sut2 +	chr2R	8089313	intergenic	sut2 +,sut3 +	chr2R	8089394	intergenic	sut3 +,sut2 +	chr2R_7_8085001	chr2R_8085001	S2R+
239	chr2R	7491333	7491373	chr2R	8132637	8132677		5	641307	12.5	9.5	11.0	0.4	641344	chr2R	7491333	exon	Coop -	chr2R	7812005	5` UTR	CG1550 -	chr2R	8132677	exon	Pabp2 +	chr2R_5_7810001	chr2R_7810001	S2R+
240	chr2R	8254032	8254073	chr2R	8254147	8254186		5	113	1.5	1.5	1.5	2.0	154	chr2R	8254032	intergenic	CG14760 +	chr2R	8254109	intergenic	CG14760 +	chr2R	8254186	intergenic	CG14760 +	chr2R_5_8250001	chr2R_8250001	S2R+
241	chr2R	8294745	8294802	chr2R	8295111	8295153		5	363	1.5	1.0	1.2	2.3	408	chr2R	8294745	intergenic	not near genes	chr2R	8294949	intergenic	not near genes	chr2R	8295153	intergenic	not near genes	chr2R_5_8290001	chr2R_8290001	S2R+
242	chr2R	8334279	8334309	chr2R	8334389	8334419		4	110	1.5	2.0	1.8	1.4	140	chr2R	8334279	intron	pdm3 +	chr2R	8334349	intron	pdm3 +	chr2R	8334419	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	S2R+
243	chr2R	8338634	8338654	chr2R	8338741	8338761		4	107	0.0	2.0	1.0	2.0	127	chr2R	8338634	intron	pdm3 +	chr2R	8338698	intron	pdm3 +	chr2R	8338761	intron	pdm3 +	chr2R_4_8335001	chr2R_8335001	S2R+
244	chr2R	8452014	8452063	chr2R	8452122	8452171		4	108	2.5	1.0	1.8	1.4	157	chr2R	8452014	intergenic	Mal-A1 -	chr2R	8452092	intergenic	Mal-A1 -	chr2R	8452171	intergenic	Mal-A1 -	chr2R_4_8450001	chr2R_8450001	S2R+
245	chr2R	9043930	9043951	chr2R	9047253	9047274		4	3323	22.5	7.0	14.8	0.3	3344	chr2R	9043930	exon	PPO2 -	chr2R	9045602	3` UTR	CG13743 -	chr2R	9047274	intron	CG13743 -	chr2R_4_9045001	chr2R_9045001	S2R+
246	chr2R	9075887	9075918	chr2R	9076045	9076075		4	158	4.0	0.0	2.0	1.3	188	chr2R	9075887	exon	ana +	chr2R	9075981	intron	ana +	chr2R	9076075	intron	ana +	chr2R_4_9075001	chr2R_9075001	S2R+
247	chr2R	9151276	9151316	chr2R	9157771	9157811	Burdock	5	6495	2.0	2.0	2.0	1.7	6535	chr2R	9151276	exon	CG30345 +	chr2R	9154544	intergenic	not near genes	chr2R	9157811	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	S2R+
248	chr2R	9212681	9212720	chr2R	9213192	9213231	roo	8	511	2.5	2.0	2.2	2.5	550	chr2R	9212681	intergenic	CR45309 +	chr2R	9212956	intergenic	CR45309 +	chr2R	9213231	5` UTR	CR45309 +	chr2R_8_9210001	chr2R_9210001	S2R+
249	chr2R	9237231	9237247	chr2R	9237621	9237637		4	390	2.5	1.5	2.0	1.3	406	chr2R	9237231	intron	hig -	chr2R	9237434	intron	hig -	chr2R	9237637	intron,exon	hig -,Cyp4p2 +	chr2R_4_9235001	chr2R_9235001	S2R+
250	chr2R	9391053	9391084	chr2R	9391639	9391670		7	585	0.5	3.5	2.0	2.3	617	chr2R	9391053	intron	l(2)03659 +	chr2R	9391362	exon	l(2)03659 +	chr2R	9391670	exon	l(2)03659 +	chr2R_7_9390001	chr2R_9390001	S2R+
251	chr2R	9871040	9871074	chr2R	9871551	9871585	roo	4	511	0.0	5.5	2.8	1.1	545	chr2R	9871040	intron	cbx -	chr2R	9871312	intron	cbx -	chr2R	9871585	intron,5` UTR	cbx -,CG18446 +	chr2R_4_9870001	chr2R_9870001	S2R+
252	chr2R	9945422	9945461	chr2R	9945643	9945682	BS	8	221	2.5	1.5	2.0	2.7	260	chr2R	9945422	intron	Mef2 -	chr2R	9945552	intron	Mef2 -	chr2R	9945682	intron	Mef2 -	chr2R_8_9945001	chr2R_9945001	S2R+
253	chr2R	9972661	9972718	chr2R	9973190	9973246		5	529	3.0	4.5	3.8	1.0	585	chr2R	9972661	exon	CG12134 +	chr2R	9972954	intergenic	CG12134 +	chr2R	9973246	intergenic	CG12134 +	chr2R_5_9970001	chr2R_9970001	S2R+
254	chr2R	10005829	10005866	chr2R	10007015	10007056	1360	4	1189	2.0	2.0	2.0	1.3	1227	chr2R	10005829	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007056	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	S2R+
255	chr2R	10008561	10008578	chr2R	10008661	10008689		4	108	0.0	0.0	0.0	4.0	128	chr2R	10008561	intron	Pka-R2 -	chr2R	10008625	intron	Pka-R2 -	chr2R	10008689	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	S2R+
256	chr2R	10037721	10037742	chr2R	10037812	10037846		6	102	2.0	0.0	1.0	3.0	125	chr2R	10037721	exon	oys -	chr2R	10037784	intron	oys -	chr2R	10037846	intron	oys -	chr2R_6_10035001	chr2R_10035001	S2R+
257	chr2R	10086902	10086927	chr2R	10087024	10087049		6	122	5.0	3.0	4.0	1.2	147	chr2R	10086902	intron,exon	CG2269 +,sut4 -	chr2R	10086976	intron,5` UTR	CG2269 +,sut4 -	chr2R	10087049	intron,5` UTR	CG2269 +,sut4 -	chr2R_6_10085001	chr2R_10085001	S2R+
258	chr2R	10162593	10162636	chr2R	10162697	10162742		5	105	1.0	3.0	2.0	1.7	149	chr2R	10162593	intron	KCNQ -	chr2R	10162668	intron	KCNQ -	chr2R	10162742	intron	KCNQ -	chr2R_5_10160001	chr2R_10160001	S2R+
259	chr2R	10216196	10216216	chr2R	10216299	10216319		4	103	1.5	2.5	2.0	1.3	123	chr2R	10216196	intron,intron	CG12912 -,Hr46 -	chr2R	10216258	intron,intron	CG12912 -,Hr46 -	chr2R	10216319	intron,intron	CG12912 -,Hr46 -	chr2R_4_10215001	chr2R_10215001	S2R+
260	chr2R	10225721	10225750	chr2R	10225828	10225857		4	107	0.0	1.5	0.8	2.2	136	chr2R	10225721	intron,intron	CG12912 -,Hr46 -	chr2R	10225789	intron,intron	CG12912 -,Hr46 -	chr2R	10225857	intron,intron	CG12912 -,Hr46 -	chr2R_4_10225001	chr2R_10225001	S2R+
261	chr2R	10266476	10266529	chr2R	10266588	10266617		7	103	3.5	2.5	3.0	1.8	141	chr2R	10266476	intron	CG12910 +	chr2R	10266546	intron	CG12910 +	chr2R	10266617	intron	CG12910 +	chr2R_7_10265001	chr2R_10265001	S2R+
262	chr2R	10318499	10318523	chr2R	10318610	10318634		5	111	0.0	0.5	0.2	4.2	135	chr2R	10318499	intron	Ndg +	chr2R	10318566	intron	Ndg +	chr2R	10318634	intron	Ndg +	chr2R_5_10315001	chr2R_10315001	S2R+
263	chr2R	10319697	10319741	chr2R	10319814	10319856		13	117	1.0	3.0	2.0	4.3	159	chr2R	10319697	intron	Ndg +	chr2R	10319776	intron	Ndg +	chr2R	10319856	intron,3` UTR	Ndg +,CG34222 -	chr2R_13_10315001	chr2R_10315001	S2R+
264	chr2R	10532137	10532186	chr2R	10551335	10551387		5	19201	27.5	16.0	21.8	0.2	19250	chr2R	10532137	intron	lola -	chr2R	10541762	intron,5` UTR	lola -,CR45135 +	chr2R	10551387	intergenic	not near genes	chr2R_5_10540001	chr2R_10540001	S2R+
265	chr2R	10644037	10644072	chr2R	10644140	10644172		6	102	2.0	0.0	1.0	3.0	135	chr2R	10644037	intron	Git -	chr2R	10644104	intron	Git -	chr2R	10644172	intron	Git -	chr2R_6_10640001	chr2R_10640001	S2R+
266	chr2R	10678463	10678508	chr2R	10678594	10678639		5	131	1.0	3.0	2.0	1.7	176	chr2R	10678463	intron	stan +	chr2R	10678551	intron	stan +	chr2R	10678639	intron	stan +	chr2R_5_10675001	chr2R_10675001	S2R+
267	chr2R	10691093	10691125	chr2R	10691198	10691230		5	105	0.5	1.0	0.8	2.8	137	chr2R	10691093	intron	stan +	chr2R	10691162	intron	stan +	chr2R	10691230	intron	stan +	chr2R_5_10690001	chr2R_10690001	S2R+
268	chr2R	10720263	10720311	chr2R	10720364	10720412		6	100	2.5	2.5	2.5	1.7	149	chr2R	10720263	3` UTR	stan +	chr2R	10720338	3` UTR	stan +	chr2R	10720412	3` UTR	stan +	chr2R_6_10720001	chr2R_10720001	S2R+
269	chr2R	10782730	10782780	chr2R	10782836	10782872		9	103	2.5	1.5	2.0	3.0	142	chr2R	10782730	intron	CG33144 -	chr2R	10782801	intron	CG33144 -	chr2R	10782872	intron	CG33144 -	chr2R_9_10780001	chr2R_10780001	S2R+
270	chr2R	10948022	10948059	chr2R	10955592	10955625	17.6	5	7572	0.5	1.0	0.8	2.8	7603	chr2R	10948022	intergenic	not near genes	chr2R	10951824	intergenic	not near genes	chr2R	10955625	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	S2R+
271	chr2R	10959074	10959089	chr2R	10959177	10959190		4	102	0.5	1.0	0.8	2.2	116	chr2R	10959074	intergenic	not near genes	chr2R	10959132	intergenic	not near genes	chr2R	10959190	intergenic	not near genes	chr2R_4_10955001	chr2R_10955001	S2R+
272	chr2R	11009800	11009837	chr2R	11018997	11019036	roo	7	9194	2.0	1.5	1.8	2.5	9236	chr2R	11009800	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019036	intron	luna -	chr2R_7_11010001	chr2R_11010001	S2R+
273	chr2R	11019864	11019900	chr2R	11024954	11024990	jockey	10	5091	1.5	3.5	2.5	2.9	5126	chr2R	11019864	intron	luna -	chr2R	11022427	intron	luna -	chr2R	11024990	intron	luna -	chr2R_10_11020001	chr2R_11020001	S2R+
274	chr2R	11089192	11089236	chr2R	11089333	11089378		4	142	38.0	57.0	47.5	0.1	186	chr2R	11089192	intron	luna -	chr2R	11089285	intron	luna -	chr2R	11089378	intron	luna -	chr2R_4_11085001	chr2R_11085001	S2R+
275	chr2R	11075149	11075171	chr2R	11100616	11100632		6	25466	36.5	72.5	54.5	0.1	25483	chr2R	11075149	intron	luna -	chr2R	11087890	intron,3` UTR	luna -,CG43188 +	chr2R	11100632	intron	luna -	chr2R_6_11085001	chr2R_11085001	S2R+
276	chr2R	11079873	11079887	chr2R	11100779	11100790		10	20904	84.0	52.0	68.0	0.1	20917	chr2R	11079873	intron	luna -	chr2R	11090332	intron	luna -	chr2R	11100790	intron	luna -	chr2R_10_11090001	chr2R_11090001	S2R+
277	chr2R	11079871	11079896	chr2R	11100791	11100799		8	20906	84.5	45.0	64.8	0.1	20928	chr2R	11079871	intron	luna -	chr2R	11090335	intron	luna -	chr2R	11100799	intron	luna -	chr2R_8_11090001	chr2R_11090001	S2R+
278	chr2R	11207797	11207833	chr2R	11208014	11208050	BS	4	217	2.0	1.0	1.5	1.6	253	chr2R	11207797	intron	shn +	chr2R	11207924	intron	shn +	chr2R	11208050	intron	shn +	chr2R_4_11205001	chr2R_11205001	S2R+
279	chr2R	11253211	11253264	chr2R	11253311	11253358		7	100	3.5	0.5	2.0	2.3	147	chr2R	11253211	intron	Cpr47Ea -	chr2R	11253284	intron	Cpr47Ea -	chr2R	11253358	5` UTR	Cpr47Ea -	chr2R_7_11250001	chr2R_11250001	S2R+
280	chr2R	11262183	11262221	chr2R	11262296	11262334		6	113	3.0	3.5	3.2	1.4	151	chr2R	11262183	intergenic	Cpr47Ed -	chr2R	11262258	intergenic	Cpr47Ed -	chr2R	11262334	intergenic	not near genes	chr2R_6_11260001	chr2R_11260001	S2R+
281	chr2R	11415494	11415545	chr2R	11418668	11418719	opus	4	3174	1.5	3.5	2.5	1.1	3225	chr2R	11415494	intron	Drip -	chr2R	11417106	intron	Drip -	chr2R	11418719	intron	Drip -	chr2R_4_11415001	chr2R_11415001	S2R+
282	chr2R	11472631	11472678	chr2R	11473853	11473900	pogo	5	1221	2.5	2.0	2.2	1.6	1269	chr2R	11472631	intergenic	not near genes	chr2R	11473266	intergenic	not near genes	chr2R	11473900	intergenic	not near genes	chr2R_5_11470001	chr2R_11470001	S2R+
283	chr2R	12789288	12789326	chr2R	12797674	12797713	roo	8	8387	1.5	3.5	2.5	2.3	8425	chr2R	12789288	intron,3` UTR	sca +,CR45137 -	chr2R	12793500	intron,intron	sca +,CR45137 -	chr2R	12797713	intron,3` UTR	sca +,CR45137 -	chr2R_8_12790001	chr2R_12790001	S2R+
284	chr2R	12988264	12988414	chr2R	12988401	12988507		5	123	0.0	0.0	0.0	5.0	243	chr2R	12988264	intergenic	not near genes	chr2R	12988386	intergenic	not near genes	chr2R	12988507	intergenic	not near genes	chr2R_5_12985001	chr2R_12985001	S2R+
285	chr2R	13089050	13089108	chr2R	13089209	13089238		5	152	1.5	1.0	1.2	2.3	188	chr2R	13089050	intergenic	not near genes	chr2R	13089144	intergenic	not near genes	chr2R	13089238	intergenic	not near genes	chr2R_5_13085001	chr2R_13085001	S2R+
286	chr2R	13136828	13136861	chr2R	13141651	13141681	Doc	7	4819	2.5	4.0	3.2	1.7	4853	chr2R	13136828	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141681	intron	Cap-G +	chr2R_7_13135001	chr2R_13135001	S2R+
287	chr2R	13309659	13309670	chr2R	13309802	13309813		4	142	0.5	1.0	0.8	2.2	154	chr2R	13309659	intergenic	not near genes	chr2R	13309736	intergenic	not near genes	chr2R	13309813	intergenic	not near genes	chr2R_4_13305001	chr2R_13305001	S2R+
288	chr2R	14135476	14135519	chr2R	14135779	14135827		6	307	1.5	1.0	1.2	2.7	351	chr2R	14135476	intron	Prosap -	chr2R	14135652	intron	Prosap -	chr2R	14135827	intron	Prosap -	chr2R_6_14135001	chr2R_14135001	S2R+
289	chr2R	14081558	14081574	chr2R	14195602	14195618		4	114044	6.5	6.5	6.5	0.5	114060	chr2R	14081558	intron	Prosap -	chr2R	14138588	intron	Prosap -	chr2R	14195618	exon	CG30069 +	chr2R_4_14135001	chr2R_14135001	S2R+
290	chr2R	14219024	14219073	chr2R	14221113	14221162		6	2088	8.0	7.0	7.5	0.7	2138	chr2R	14219024	intergenic	not near genes	chr2R	14220093	5` UTR	CG8468 +	chr2R	14221162	intron	CG8468 +	chr2R_6_14220001	chr2R_14220001	S2R+
291	chr2R	14197205	14197239	chr2R	14236147	14236181		6	38943	8.5	3.5	6.0	0.9	38976	chr2R	14197205	exon	CG30069 +	chr2R	14216693	intergenic	RpS23 -	chr2R	14236181	exon	CG8485 -	chr2R_6_14215001	chr2R_14215001	S2R+
292	chr2R	14467286	14467320	chr2R	14476469	14476503	roo	5	9183	0.5	2.5	1.5	2.0	9217	chr2R	14467286	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476503	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	S2R+
293	chr2R	14610229	14610265	chr2R	14610346	14610380		5	115	3.0	1.5	2.2	1.6	151	chr2R	14610229	exon	Su(var)2-HP2 -	chr2R	14610304	exon	Su(var)2-HP2 -	chr2R	14610380	exon	Su(var)2-HP2 -	chr2R_5_14610001	chr2R_14610001	S2R+
294	chr2R	14748155	14748217	chr2R	14748490	14748545		4	334	0.0	0.0	0.0	4.0	390	chr2R	14748155	3` UTR	AttA +	chr2R	14748350	intergenic	AttA +	chr2R	14748545	intergenic	AttA +	chr2R_4_14745001	chr2R_14745001	S2R+
295	chr2R	14855009	14855041	chr2R	14855126	14855158		8	116	2.5	0.0	1.2	3.6	149	chr2R	14855009	5` UTR	Ciao1 -	chr2R	14855084	intergenic	Ciao1 -,HPS1 +	chr2R	14855158	intergenic	Ciao1 -,HPS1 +	chr2R_8_14855001	chr2R_14855001	S2R+
296	chr2R	14922120	14922169	chr2R	14922218	14922268		4	98	1.0	0.5	0.8	2.2	148	chr2R	14922120	intron	CG10249 -	chr2R	14922194	intron	CG10249 -	chr2R	14922268	intron	CG10249 -	chr2R_4_14920001	chr2R_14920001	S2R+
297	chr2R	14987358	14987390	chr2R	14987527	14987559		4	169	2.0	1.5	1.8	1.4	201	chr2R	14987358	intron	pcs +	chr2R	14987458	intron	pcs +	chr2R	14987559	intron	pcs +	chr2R_4_14985001	chr2R_14985001	S2R+
298	chr2R	15012785	15012839	chr2R	15012896	15012950		5	110	0.5	1.5	1.0	2.5	165	chr2R	15012785	intron	hbs +	chr2R	15012868	intron	hbs +	chr2R	15012950	intron	hbs +	chr2R_5_15010001	chr2R_15010001	S2R+
299	chr2R	15015435	15015490	chr2R	15022884	15022914	mdg1	4	7441	0.0	0.0	0.0	4.0	7479	chr2R	15015435	intron	hbs +	chr2R	15019174	intron	hbs +	chr2R	15022914	intron	hbs +	chr2R_4_15015001	chr2R_15015001	S2R+
300	chr2R	15054717	15054765	chr2R	15054817	15054856		8	100	4.0	1.5	2.8	2.1	139	chr2R	15054717	intergenic	not near genes	chr2R	15054786	intergenic	not near genes	chr2R	15054856	intergenic	not near genes	chr2R_8_15050001	chr2R_15050001	S2R+
301	chr2R	15119301	15119346	chr2R	15127807	15127852	Tirant	8	8506	1.5	2.5	2.0	2.7	8551	chr2R	15119301	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127852	intron	chn +	chr2R_8_15120001	chr2R_15120001	S2R+
302	chr2R	15168253	15168288	chr2R	15168369	15168406		6	118	1.5	2.5	2.0	2.0	153	chr2R	15168253	intron	igl +	chr2R	15168330	intron	igl +	chr2R	15168406	intron	igl +	chr2R_6_15165001	chr2R_15165001	S2R+
303	chr2R	15196075	15196118	chr2R	15196196	15196239		6	116	3.0	2.0	2.5	1.7	164	chr2R	15196075	intergenic	not near genes	chr2R	15196157	intergenic	not near genes	chr2R	15196239	intergenic	not near genes	chr2R_6_15195001	chr2R_15195001	S2R+
304	chr2R	15295847	15296139	chr2R	15296019	15296246		8	163	3.5	2.0	2.8	2.1	399	chr2R	15295847	intron	Trpm -	chr2R	15296046	intron	Trpm -	chr2R	15296246	intron	Trpm -	chr2R_8_15295001	chr2R_15295001	S2R+
305	chr2R	15404093	15404119	chr2R	15404216	15404242		5	123	2.0	0.5	1.2	2.3	149	chr2R	15404093	intron	CG43729 +	chr2R	15404168	intron	CG43729 +	chr2R	15404242	intron	CG43729 +	chr2R_5_15400001	chr2R_15400001	S2R+
306	chr2R	15437008	15437025	chr2R	15437967	15437984		6	959	3.0	3.5	3.2	1.4	976	chr2R	15437008	intron	CG43729 +	chr2R	15437496	intron	CG43729 +	chr2R	15437984	intron	CG43729 +	chr2R_6_15435001	chr2R_15435001	S2R+
307	chr2R	15471565	15471608	chr2R	15471695	15471738		7	131	16.0	13.0	14.5	0.5	173	chr2R	15471565	3` UTR	CG43729 +	chr2R	15471652	3` UTR	CG43729 +	chr2R	15471738	3` UTR	CG43729 +	chr2R_7_15470001	chr2R_15470001	S2R+
308	chr2R	15898861	15898908	chr2R	15898984	15899030		17	122	1.5	3.5	2.5	4.9	169	chr2R	15898861	intron	sli -	chr2R	15898946	intron	sli -	chr2R	15899030	intron	sli -	chr2R_17_15895001	chr2R_15895001	S2R+
309	chr2R	15951837	15951865	chr2R	15951936	15951960		6	99	1.5	6.5	4.0	1.2	123	chr2R	15951837	intron	Strn-Mlck -	chr2R	15951898	intron	Strn-Mlck -	chr2R	15951960	intron	Strn-Mlck -	chr2R_6_15950001	chr2R_15950001	S2R+
310	chr2R	15847865	15847910	chr2R	15952525	15952581		7	104665	13.0	18.5	15.8	0.4	104716	chr2R	15847865	intron	tun +	chr2R	15900223	intron	sli -	chr2R	15952581	intron	Strn-Mlck -	chr2R_7_15900001	chr2R_15900001	S2R+
311	chr2R	16054932	16054948	chr2R	16055035	16055056		5	104	4.5	3.0	3.8	1.0	124	chr2R	16054932	intron	CG8405 +	chr2R	16054994	intron	CG8405 +	chr2R	16055056	intron	CG8405 +	chr2R_5_16050001	chr2R_16050001	S2R+
312	chr2R	16392302	16392327	chr2R	16392411	16392435		7	107	3.0	3.0	3.0	1.8	133	chr2R	16392302	intron	Sema-2b +	chr2R	16392368	intron	Sema-2b +	chr2R	16392435	intron	Sema-2b +	chr2R_7_16390001	chr2R_16390001	S2R+
313	chr2R	16689128	16689175	chr2R	16689482	16689514		5	349	2.5	0.5	1.5	2.0	386	chr2R	16689128	intron	CG30463 -	chr2R	16689321	intron	CG30463 -	chr2R	16689514	intron	CG30463 -	chr2R_5_16685001	chr2R_16685001	S2R+
314	chr2R	16737111	16737161	chr2R	16737236	16737285		12	124	1.5	2.5	2.0	4.0	174	chr2R	16737111	3` UTR	CG43104 -	chr2R	16737198	3` UTR	CG43104 -	chr2R	16737285	exon	CG43104 -	chr2R_12_16735001	chr2R_16735001	S2R+
315	chr2R	16782309	16782316	chr2R	16782410	16782438		4	116	7.0	7.5	7.2	0.5	129	chr2R	16782309	exon	resilin +	chr2R	16782374	exon	resilin +	chr2R	16782438	exon	resilin +	chr2R_4_16780001	chr2R_16780001	S2R+
316	chr2R	17102677	17102718	chr2R	17102783	17102821		4	105	1.5	1.5	1.5	1.6	144	chr2R	17102677	5` UTR	CG30456 +	chr2R	17102749	5` UTR	CG30456 +	chr2R	17102821	5` UTR	CG30456 +	chr2R_4_17100001	chr2R_17100001	S2R+
317	chr2R	17226428	17226466	chr2R	17226797	17226824		4	366	2.0	3.0	2.5	1.1	396	chr2R	17226428	intron	mbl +	chr2R	17226626	intron	mbl +	chr2R	17226824	intron	mbl +	chr2R_4_17225001	chr2R_17225001	S2R+
318	chr2R	17236509	17236533	chr2R	17241737	17241762	copia	5	5228	1.0	4.0	2.5	1.4	5253	chr2R	17236509	intron	mbl +	chr2R	17239136	intron	mbl +	chr2R	17241762	intron	mbl +	chr2R_5_17235001	chr2R_17235001	S2R+
319	chr2R	17250672	17250717	chr2R	17250781	17250826		4	108	1.0	3.0	2.0	1.3	154	chr2R	17250672	intron	mbl +	chr2R	17250749	intron	mbl +	chr2R	17250826	intron	mbl +	chr2R_4_17250001	chr2R_17250001	S2R+
320	chr2R	17389246	17389296	chr2R	17389362	17389412		10	116	2.0	2.5	2.2	3.1	166	chr2R	17389246	intergenic	CR44344 -	chr2R	17389329	intergenic	CR44344 -	chr2R	17389412	intergenic	CR44344 -	chr2R_10_17385001	chr2R_17385001	S2R+
321	chr2R	17481015	17481036	chr2R	17481116	17481139		5	105	6.0	7.0	6.5	0.7	124	chr2R	17481015	3` UTR,exon	CG43110 -,veil +	chr2R	17481077	3` UTR,exon	CG43110 -,veil +	chr2R	17481139	3` UTR,exon	CG43110 -,veil +	chr2R_5_17480001	chr2R_17480001	S2R+
322	chr2R	17485892	17485941	chr2R	17490687	17490734	F-element	4	4794	0.5	1.5	1.0	2.0	4842	chr2R	17485892	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488313	intron	NT5E-2 +	chr2R	17490734	intron	NT5E-2 +	chr2R_4_17485001	chr2R_17485001	S2R+
323	chr2R	17655183	17655231	chr2R	17655281	17655330		10	98	1.0	2.5	1.8	3.6	147	chr2R	17655183	intron	CCHa1-R -	chr2R	17655256	intron	CCHa1-R -	chr2R	17655330	intron	CCHa1-R -	chr2R_10_17655001	chr2R_17655001	S2R+
324	chr2R	17784019	17784056	chr2R	17784282	17784321	pogo	5	264	2.0	6.0	4.0	1.0	302	chr2R	17784019	intergenic	mir-31a -	chr2R	17784170	intergenic	mir-31a -	chr2R	17784321	intergenic	mir-31a -	chr2R_5_17780001	chr2R_17780001	S2R+
325	chr2R	17938873	17938925	chr2R	17938997	17939049		8	124	1.5	4.0	2.8	2.1	176	chr2R	17938873	intergenic	not near genes	chr2R	17938961	intergenic	not near genes	chr2R	17939049	intergenic	not near genes	chr2R_8_17935001	chr2R_17935001	S2R+
326	chr2R	18033622	18033660	chr2R	18033777	18033816		4	155	1.0	0.5	0.8	2.2	194	chr2R	18033622	intergenic	not near genes	chr2R	18033719	intergenic	not near genes	chr2R	18033816	intergenic	not near genes	chr2R_4_18030001	chr2R_18030001	S2R+
327	chr2R	18219621	18219652	chr2R	18219728	18219759		4	107	1.0	1.5	1.2	1.8	138	chr2R	18219621	intergenic	not near genes	chr2R	18219690	intergenic	not near genes	chr2R	18219759	intergenic	not near genes	chr2R_4_18215001	chr2R_18215001	S2R+
328	chr2R	18358349	18358414	chr2R	18372602	18372647	roo	4	14248	0.0	0.0	0.0	4.0	14298	chr2R	18358349	intergenic	not near genes	chr2R	18365498	intergenic	not near genes	chr2R	18372647	intergenic	not near genes	chr2R_4_18365001	chr2R_18365001	S2R+
329	chr2R	18405726	18405776	chr2R	18405832	18405881		4	104	0.5	0.0	0.2	3.3	155	chr2R	18405726	intergenic	GstE6 +,GstE5 +	chr2R	18405804	intergenic	GstE6 +,GstE5 +	chr2R	18405881	intergenic	GstE6 +	chr2R_4_18405001	chr2R_18405001	S2R+
330	chr2R	18408261	18408295	chr2R	18408407	18408441		6	146	0.0	1.5	0.8	3.3	180	chr2R	18408261	exon	GstE8 +	chr2R	18408351	exon	GstE8 +	chr2R	18408441	exon	GstE8 +	chr2R_6_18405001	chr2R_18405001	S2R+
331	chr2R	18487814	18487846	chr2R	18495290	18495341	blood	4	7481	0.5	1.0	0.8	2.2	7527	chr2R	18487814	intron	CG30116 -	chr2R	18491578	intron	CG30116 -	chr2R	18495341	intron	CG30116 -	chr2R_4_18490001	chr2R_18490001	S2R+
332	chr2R	18528177	18528203	chr2R	18528287	18528313		4	110	2.0	1.5	1.8	1.4	136	chr2R	18528177	intron	CG10924 +	chr2R	18528245	intron	CG10924 +	chr2R	18528313	intron	CG10924 +	chr2R_4_18525001	chr2R_18525001	S2R+
333	chr2R	18575810	18575829	chr2R	18581991	18582042	3S18	6	6200	2.5	3.5	3.0	1.5	6232	chr2R	18575810	intron	GEFmeso -	chr2R	18578926	intron	GEFmeso -	chr2R	18582042	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	S2R+
334	chr2R	18590845	18590881	chr2R	18600022	18600055	roo	8	9176	2.5	3.0	2.8	2.1	9210	chr2R	18590845	intron	GEFmeso -	chr2R	18595450	intron	GEFmeso -	chr2R	18600055	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	S2R+
335	chr2R	18646394	18646432	chr2R	18646559	18646602		7	168	0.5	3.5	2.0	2.3	208	chr2R	18646394	intron	SP2637 -	chr2R	18646498	intron	SP2637 -	chr2R	18646602	intron	SP2637 -	chr2R_7_18645001	chr2R_18645001	S2R+
336	chr2R	18769628	18769635	chr2R	18769914	18769921		4	286	4.0	0.5	2.2	1.2	293	chr2R	18769628	intron	Mctp +	chr2R	18769774	intron	Mctp +	chr2R	18769921	intron	Mctp +	chr2R_4_18765001	chr2R_18765001	S2R+
337	chr2R	18863291	18863346	chr2R	18863398	18863453		7	106	1.0	4.0	2.5	2.0	162	chr2R	18863291	intergenic	CG43069 +	chr2R	18863372	intergenic	CG43069 +	chr2R	18863453	intergenic	CG43069 +,CG43070 +	chr2R_7_18860001	chr2R_18860001	S2R+
338	chr2R	19007085	19007116	chr2R	19007209	19007241		4	124	3.0	1.5	2.2	1.2	156	chr2R	19007085	intron	tn +	chr2R	19007163	intron	tn +	chr2R	19007241	intron	tn +	chr2R_4_19005001	chr2R_19005001	S2R+
339	chr2R	19012943	19012969	chr2R	19013062	19013088		4	119	0.5	1.0	0.8	2.2	145	chr2R	19012943	intergenic	not near genes	chr2R	19013016	intergenic	not near genes	chr2R	19013088	intergenic	not near genes	chr2R_4_19010001	chr2R_19010001	S2R+
340	chr2R	19535082	19535122	chr2R	19535323	19535364		8	241	1.5	2.5	2.0	2.7	282	chr2R	19535082	intron	sm -	chr2R	19535223	intron	sm -	chr2R	19535364	intron	sm -	chr2R_8_19535001	chr2R_19535001	S2R+
341	chr2R	19537121	19537167	chr2R	19537235	19537258		8	110	2.0	0.0	1.0	4.0	137	chr2R	19537121	intron	sm -	chr2R	19537190	intron	sm -	chr2R	19537258	intron	sm -	chr2R_8_19535001	chr2R_19535001	S2R+
342	chr2R	19539742	19539769	chr2R	19539882	19539909		5	139	1.0	2.5	1.8	1.8	167	chr2R	19539742	intron	sm -	chr2R	19539826	intron	sm -	chr2R	19539909	intron	sm -	chr2R_5_19535001	chr2R_19535001	S2R+
343	chr2R	19776581	19776610	chr2R	19779929	19779958	jockey	4	3348	1.5	0.5	1.0	2.0	3377	chr2R	19776581	intergenic	not near genes	chr2R	19778270	intergenic	not near genes	chr2R	19779958	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	S2R+
344	chr2R	19957426	19957459	chr2R	19962653	19962686	copia	4	5227	1.0	2.0	1.5	1.6	5260	chr2R	19957426	intergenic	CG44623 +	chr2R	19960056	intergenic	not near genes	chr2R	19962686	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	S2R+
345	chr2R	20161901	20161910	chr2R	20162003	20162013		5	103	0.0	2.5	1.2	2.3	112	chr2R	20161901	intergenic	not near genes	chr2R	20161957	intergenic	not near genes	chr2R	20162013	intergenic	not near genes	chr2R_5_20160001	chr2R_20160001	S2R+
346	chr2R	20523018	20523071	chr2R	20523152	20523204		11	134	1.5	1.0	1.2	5.0	186	chr2R	20523018	intergenic	not near genes	chr2R	20523111	intergenic	not near genes	chr2R	20523204	intergenic	not near genes	chr2R_11_20520001	chr2R_20520001	S2R+
347	chr2R	20739448	20739473	chr2R	20744240	20744261	F-element	7	4792	2.5	5.5	4.0	1.4	4813	chr2R	20739448	intron	dpr +	chr2R	20741854	intron	dpr +	chr2R	20744261	intron	dpr +	chr2R_7_20740001	chr2R_20740001	S2R+
348	chr2R	20865689	20865735	chr2R	20865797	20865843		6	108	1.5	0.5	1.0	3.0	154	chr2R	20865689	intron	CG15227 +	chr2R	20865766	intron	CG15227 +	chr2R	20865843	intron	CG15227 +	chr2R_6_20865001	chr2R_20865001	S2R+
349	chr2R	20962886	20962933	chr2R	20963009	20963056		6	123	3.5	0.0	1.8	2.1	170	chr2R	20962886	intergenic	not near genes	chr2R	20962971	intergenic	not near genes	chr2R	20963056	intergenic	not near genes	chr2R_6_20960001	chr2R_20960001	S2R+
350	chr2R	21180553	21180604	chr2R	21180762	21180816		7	211	0.5	0.5	0.5	4.7	263	chr2R	21180553	intron	Pu +	chr2R	21180684	intron	Pu +	chr2R	21180816	intron	Pu +	chr2R_7_21180001	chr2R_21180001	S2R+
351	chr2R	21322923	21322969	chr2R	21323032	21323078		11	108	3.0	5.0	4.0	2.2	155	chr2R	21322923	5` UTR	CG30394 -	chr2R	21323000	5` UTR	CG30394 -	chr2R	21323078	intron	CG30394 -	chr2R_11_21320001	chr2R_21320001	S2R+
352	chr2R	21358942	21358991	chr2R	21400664	21400713		6	41722	2.5	6.0	4.2	1.2	41771	chr2R	21358942	exon	cv-2 -	chr2R	21379828	intergenic	cv-2 -	chr2R	21400713	intron	Sdc -	chr2R_6_21375001	chr2R_21375001	S2R+
353	chr2R	21546800	21546820	chr2R	21546887	21546926		4	97	4.0	2.5	3.2	1.0	126	chr2R	21546800	intron	Egfr +	chr2R	21546863	intron	Egfr +	chr2R	21546926	intron	Egfr +	chr2R_4_21545001	chr2R_21545001	S2R+
354	chr2R	21592820	21592856	chr2R	21592928	21592947		5	101	5.5	3.5	4.5	0.9	127	chr2R	21592820	intergenic	not near genes	chr2R	21592884	intergenic	not near genes	chr2R	21592947	intergenic	not near genes	chr2R_5_21590001	chr2R_21590001	S2R+
355	chr2R	21593560	21593606	chr2R	21594284	21594338		13	731	4.0	3.0	3.5	2.9	778	chr2R	21593560	intergenic	not near genes	chr2R	21593949	intergenic	not near genes	chr2R	21594338	intergenic	not near genes	chr2R_13_21590001	chr2R_21590001	S2R+
356	chr2R	21700138	21700183	chr2R	21700249	21700294		10	110	1.0	5.0	3.0	2.5	156	chr2R	21700138	intron	HmgZ -	chr2R	21700216	intron	HmgZ -	chr2R	21700294	intron	HmgZ -	chr2R_10_21700001	chr2R_21700001	S2R+
357	chr2R	21721572	21721610	chr2R	21721685	21721723		7	112	0.5	2.5	1.5	2.8	151	chr2R	21721572	intron	LBR +	chr2R	21721648	intron	LBR +	chr2R	21721723	intron	LBR +	chr2R_7_21720001	chr2R_21720001	S2R+
358	chr2R	21738259	21738308	chr2R	21747444	21747491	roo	7	9179	1.5	5.0	3.2	1.7	9232	chr2R	21738259	intergenic	not near genes	chr2R	21742875	intergenic	not near genes	chr2R	21747491	intergenic	not near genes	chr2R_7_21740001	chr2R_21740001	S2R+
359	chr2R	21796429	21796458	chr2R	21796538	21796567		6	108	1.0	2.0	1.5	2.4	138	chr2R	21796429	5` UTR	CG34204 +	chr2R	21796498	5` UTR	CG34204 +	chr2R	21796567	exon	CG34204 +	chr2R_6_21795001	chr2R_21795001	S2R+
360	chr2R	21911820	21911862	chr2R	21911948	21911993		9	130	2.0	1.0	1.5	3.6	173	chr2R	21911820	intron	Fili +	chr2R	21911906	intron	Fili +	chr2R	21911993	intron	Fili +	chr2R_9_21910001	chr2R_21910001	S2R+
361	chr2R	22003065	22003109	chr2R	22003174	22003220		4	108	2.5	0.0	1.2	1.8	155	chr2R	22003065	intron	CG34370 -	chr2R	22003142	intron	CG34370 -	chr2R	22003220	intron	CG34370 -	chr2R_4_22000001	chr2R_22000001	S2R+
362	chr2R	22012986	22013003	chr2R	22013098	22013123		4	116	1.5	1.5	1.5	1.6	137	chr2R	22012986	intron	CG34370 -	chr2R	22013054	intron	CG34370 -	chr2R	22013123	intron	CG34370 -	chr2R_4_22010001	chr2R_22010001	S2R+
363	chr2R	22033820	22033843	chr2R	22033931	22033952		5	109	0.0	2.5	1.2	2.3	132	chr2R	22033820	intron	CG34370 -	chr2R	22033886	intron	CG34370 -	chr2R	22033952	intron	CG34370 -	chr2R_5_22030001	chr2R_22030001	S2R+
364	chr2R	22477554	22477599	chr2R	22477684	22477727		6	130	4.0	1.5	2.8	1.6	173	chr2R	22477554	intergenic	CG45063 -	chr2R	22477640	intergenic	CG45063 -	chr2R	22477727	intergenic	CG45063 -	chr2R_6_22475001	chr2R_22475001	S2R+
365	chr2R	22525726	22525776	chr2R	22529306	22529356	jockey	9	3580	0.0	1.0	0.5	6.0	3630	chr2R	22525726	intron	px -	chr2R	22527541	intron	px -	chr2R	22529356	intron	px -	chr2R_9_22525001	chr2R_22525001	S2R+
366	chr2R	22568869	22568900	chr2R	22569099	22569130		4	230	1.0	1.5	1.2	1.8	261	chr2R	22568869	intron	dnr1 -	chr2R	22569000	intron	dnr1 -	chr2R	22569130	intron	dnr1 -	chr2R_4_22565001	chr2R_22565001	S2R+
367	chr2R	22575720	22575760	chr2R	22576139	22576179		11	418	0.5	4.0	2.2	3.4	459	chr2R	22575720	intron	dnr1 -	chr2R	22575950	intron	dnr1 -	chr2R	22576179	intron	dnr1 -	chr2R_11_22575001	chr2R_22575001	S2R+
368	chr2R	22588129	22588157	chr2R	22588249	22588277		6	119	3.5	3.0	3.2	1.4	148	chr2R	22588129	intron	dnr1 -	chr2R	22588203	intron	dnr1 -	chr2R	22588277	intron	dnr1 -	chr2R_6_22585001	chr2R_22585001	S2R+
369	chr2R	22623430	22623471	chr2R	22623595	22623636		6	163	0.0	3.5	1.8	2.1	206	chr2R	22623430	intron	CG33143 +	chr2R	22623533	intron	CG33143 +	chr2R	22623636	intron	CG33143 +	chr2R_6_22620001	chr2R_22620001	S2R+
370	chr2R	22663114	22663164	chr2R	22663219	22663269		5	104	0.5	1.0	0.8	2.8	155	chr2R	22663114	3` UTR	CG42566 +	chr2R	22663192	3` UTR	CG42566 +	chr2R	22663269	intergenic	CG42566 +,CG4250 +	chr2R_5_22660001	chr2R_22660001	S2R+
371	chr2R	22756536	22756578	chr2R	22756638	22756680		9	101	1.5	0.5	1.0	4.5	144	chr2R	22756536	intron,intron	CG42260 -,CR30267 +	chr2R	22756608	intron,intron	CG42260 -,CR30267 +	chr2R	22756680	intron,intron	CG42260 -,CR30267 +	chr2R_9_22755001	chr2R_22755001	S2R+
372	chr2R	22780625	22780674	chr2R	22780756	22780804		7	129	0.5	0.5	0.5	4.7	179	chr2R	22780625	intron	CG42260 -	chr2R	22780714	intron	CG42260 -	chr2R	22780804	intron	CG42260 -	chr2R_7_22780001	chr2R_22780001	S2R+
373	chr2R	23052629	23052673	chr2R	23052729	23052774		4	101	0.5	0.0	0.2	3.3	145	chr2R	23052629	intergenic	not near genes	chr2R	23052702	intergenic	not near genes	chr2R	23052774	intergenic	not near genes	chr2R_4_23050001	chr2R_23050001	S2R+
374	chr2R	23061725	23061748	chr2R	23061867	23061890		7	140	0.5	3.5	2.0	2.3	165	chr2R	23061725	3` UTR	l(2)06496 -	chr2R	23061808	3` UTR	l(2)06496 -	chr2R	23061890	3` UTR	l(2)06496 -	chr2R_7_23060001	chr2R_23060001	S2R+
375	chr2R	23158327	23158346	chr2R	23158424	23158447		4	100	2.5	3.0	2.8	1.1	120	chr2R	23158327	intron	CG9899 +	chr2R	23158387	intron	CG9899 +	chr2R	23158447	intron	CG9899 +	chr2R_4_23155001	chr2R_23155001	S2R+
376	chr2R	23175015	23175051	chr2R	23175117	23175152		6	102	2.0	1.0	1.5	2.4	137	chr2R	23175015	intron	CG34371 -	chr2R	23175084	intron	CG34371 -	chr2R	23175152	intron	CG34371 -	chr2R_6_23175001	chr2R_23175001	S2R+
377	chr2R	23228269	23228313	chr2R	23228398	23228442		8	129	4.5	1.0	2.8	2.1	173	chr2R	23228269	intergenic	not near genes	chr2R	23228356	intergenic	not near genes	chr2R	23228442	intergenic	not near genes	chr2R_8_23225001	chr2R_23225001	S2R+
378	chr2R	23356252	23356309	chr2R	23356366	23356423		7	114	1.0	1.0	1.0	3.5	171	chr2R	23356252	3` UTR	Rpi +	chr2R	23356338	3` UTR	Rpi +	chr2R	23356423	3` UTR,3` UTR	Rpi +,CG3500 -	chr2R_7_23355001	chr2R_23355001	S2R+
379	chr2R	23368793	23368820	chr2R	23368933	23368959		4	140	3.5	0.5	2.0	1.3	166	chr2R	23368793	exon	Ice1 +	chr2R	23368876	exon	Ice1 +	chr2R	23368959	exon	Ice1 +	chr2R_4_23365001	chr2R_23365001	S2R+
380	chr2R	23422628	23422676	chr2R	23422726	23422781		10	104	3.5	3.5	3.5	2.2	153	chr2R	23422628	intron	CG9815 -	chr2R	23422704	intron	CG9815 -	chr2R	23422781	intron	CG9815 -	chr2R_10_23420001	chr2R_23420001	S2R+
381	chr2R	23436707	23436760	chr2R	23436814	23436867		14	108	1.5	1.5	1.5	5.6	160	chr2R	23436707	intergenic	not near genes	chr2R	23436787	intergenic	not near genes	chr2R	23436867	intergenic	not near genes	chr2R_14_23435001	chr2R_23435001	S2R+
382	chr2R	23437206	23437228	chr2R	23437308	23437330		4	102	2.0	1.5	1.8	1.4	124	chr2R	23437206	intergenic	not near genes	chr2R	23437268	intergenic	not near genes	chr2R	23437330	intergenic	not near genes	chr2R_4_23435001	chr2R_23435001	S2R+
383	chr2R	23448941	23448986	chr2R	23449052	23449097		4	111	2.0	0.0	1.0	2.0	156	chr2R	23448941	intron	CG43795 +	chr2R	23449019	intron	CG43795 +	chr2R	23449097	intron	CG43795 +	chr2R_4_23445001	chr2R_23445001	S2R+
384	chr2R	23529552	23529599	chr2R	23537150	23537200	412	8	7600	2.5	2.5	2.5	2.3	7648	chr2R	23529552	intron	bw -	chr2R	23533376	intron	bw -	chr2R	23537200	exon	bw -	chr2R_8_23530001	chr2R_23530001	S2R+
385	chr2R	23571045	23571089	chr2R	23571354	23571398		6	306	0.5	0.5	0.5	4.0	353	chr2R	23571045	intron	apt +	chr2R	23571222	intron	apt +	chr2R	23571398	intron	apt +	chr2R_6_23570001	chr2R_23570001	S2R+
386	chr2R	23758314	23758355	chr2R	23758415	23758456		6	101	1.0	2.5	1.8	2.1	142	chr2R	23758314	intron	CG9850 -	chr2R	23758385	intron	CG9850 -	chr2R	23758456	intron	CG9850 -	chr2R_6_23755001	chr2R_23755001	S2R+
387	chr2R	23819897	23819937	chr2R	23820013	23820052		4	116	0.5	1.0	0.8	2.2	155	chr2R	23819897	intergenic	CG5549 +	chr2R	23819974	intergenic	CG5549 +	chr2R	23820052	intergenic	CG5549 +	chr2R_4_23815001	chr2R_23815001	S2R+
388	chr2R	23832862	23832897	chr2R	23832982	23833019		5	123	1.0	1.0	1.0	2.5	157	chr2R	23832862	intron	CG5549 +	chr2R	23832940	intron	CG5549 +	chr2R	23833019	intron	CG5549 +	chr2R_5_23830001	chr2R_23830001	S2R+
389	chr2R	23914273	23914327	chr2R	23921922	23921976	412	10	7643	3.0	4.0	3.5	2.2	7703	chr2R	23914273	exon	kcc +	chr2R	23918124	intron	kcc +	chr2R	23921976	exon	kcc +	chr2R_10_23915001	chr2R_23915001	S2R+
390	chr2R	23926808	23926855	chr2R	23926911	23926962		10	106	1.5	0.5	1.0	5.0	154	chr2R	23926808	3` UTR,3` UTR	Ca-P60A -,CG2812 +	chr2R	23926885	3` UTR,3` UTR	Ca-P60A -,CG2812 +	chr2R	23926962	3` UTR	Ca-P60A -	chr2R_10_23925001	chr2R_23925001	S2R+
391	chr2R	24147041	24147087	chr2R	24154644	24154690	412	6	7603	2.0	1.5	1.8	2.1	7649	chr2R	24147041	intron	Dat +	chr2R	24150866	intron	Dat +	chr2R	24154690	intron	Dat +	chr2R_6_24150001	chr2R_24150001	S2R+
392	chr2R	24166643	24166684	chr2R	24166749	24166791		5	106	3.0	0.5	1.8	1.8	148	chr2R	24166643	intron	CG3328 +	chr2R	24166717	intron	CG3328 +	chr2R	24166791	intron	CG3328 +	chr2R_5_24165001	chr2R_24165001	S2R+
393	chr2R	24228377	24228406	chr2R	24228483	24228502		4	104	0.5	1.0	0.8	2.2	125	chr2R	24228377	intron	CG30419 -	chr2R	24228440	intron	CG30419 -	chr2R	24228502	intron	CG30419 -	chr2R_4_24225001	chr2R_24225001	S2R+
394	chr2R	24272803	24272814	chr2R	24272904	24272917	roo	4	101	3.5	6.0	4.8	0.7	114	chr2R	24272803	intergenic	not near genes	chr2R	24272860	intergenic	not near genes	chr2R	24272917	intergenic	not near genes	chr2R_4_24270001	chr2R_24270001	S2R+
395	chr2R	24278299	24278326	chr2R	24278408	24278435		5	109	3.5	2.5	3.0	1.2	136	chr2R	24278299	intron	nvy +	chr2R	24278367	intron	nvy +	chr2R	24278435	intron	nvy +	chr2R_5_24275001	chr2R_24275001	S2R+
396	chr2R	24292490	24292540	chr2R	24292600	24292650		8	108	0.0	1.0	0.5	5.3	160	chr2R	24292490	intergenic	not near genes	chr2R	24292570	intergenic	not near genes	chr2R	24292650	intergenic	not near genes	chr2R_8_24290001	chr2R_24290001	S2R+
397	chr2R	24320167	24320205	chr2R	24320266	24320299		5	99	0.5	4.0	2.2	1.6	132	chr2R	24320167	intergenic	not near genes	chr2R	24320233	intergenic	not near genes	chr2R	24320299	intergenic	not near genes	chr2R_5_24320001	chr2R_24320001	S2R+
398	chr2R	24647576	24647617	chr2R	24655158	24655196	412	6	7581	1.0	1.5	1.2	2.7	7620	chr2R	24647576	intergenic	not near genes	chr2R	24651386	intergenic	not near genes	chr2R	24655196	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	S2R+
399	chr2R	24763588	24763634	chr2R	24765588	24765635	G2	5	2000	1.0	2.0	1.5	2.0	2047	chr2R	24763588	exon	CG3894 +	chr2R	24764612	intron	CG3894 +	chr2R	24765635	exon	CG3894 +	chr2R_5_24760001	chr2R_24760001	S2R+
400	chr2R	24813392	24813439	chr2R	24813514	24813560		7	122	0.5	0.5	0.5	4.7	168	chr2R	24813392	intergenic	not near genes	chr2R	24813476	intergenic	not near genes	chr2R	24813560	intergenic	not near genes	chr2R_7_24810001	chr2R_24810001	S2R+
401	chr2R	24884050	24884079	chr2R	24884157	24884186		4	107	0.5	1.5	1.0	2.0	136	chr2R	24884050	intron	NKAIN +	chr2R	24884118	intron	NKAIN +	chr2R	24884186	intron	NKAIN +	chr2R_4_24880001	chr2R_24880001	S2R+
402	chr2R	24919063	24919117	chr2R	24919342	24919396		7	278	1.0	0.0	0.5	4.7	333	chr2R	24919063	3` UTR	NaCP60E +	chr2R	24919230	3` UTR	NaCP60E +	chr2R	24919396	3` UTR	NaCP60E +	chr2R_7_24915001	chr2R_24915001	S2R+
403	chr2R	25018334	25018351	chr2R	25018460	25018477		5	126	1.0	0.5	0.8	2.8	143	chr2R	25018334	intron	uzip +	chr2R	25018406	intron	uzip +	chr2R	25018477	intron	uzip +	chr2R_5_25015001	chr2R_25015001	S2R+
404	chr2R	25081581	25081613	chr2R	25082701	25082733		6	1120	3.0	1.0	2.0	2.0	1152	chr2R	25081581	intron	gol -	chr2R	25082157	intron	gol -	chr2R	25082733	intron	gol -	chr2R_6_25080001	chr2R_25080001	S2R+
405	chr2R	25101252	25101296	chr2R	25101379	25101422		5	127	0.0	1.0	0.5	3.3	170	chr2R	25101252	intron	lov -	chr2R	25101337	intron	lov -	chr2R	25101422	intron	lov -	chr2R_5_25100001	chr2R_25100001	S2R+
406	chr3L	110186	110234	chr3L	119378	119426	roo	5	9192	2.0	1.5	1.8	1.8	9240	chr3L	110186	intergenic	not near genes	chr3L	114806	intergenic	not near genes	chr3L	119426	intergenic	not near genes	chr3L_5_110001	chr3L_110001	S2R+
407	chr3L	349359	349411	chr3L	349471	349524		12	112	1.5	0.0	0.8	6.7	165	chr3L	349359	intron	Ptpmeg +	chr3L	349442	intron	Ptpmeg +	chr3L	349524	intron	Ptpmeg +	chr3L_12_345001	chr3L_345001	S2R+
408	chr3L	402693	402716	chr3L	409771	409794	297	6	7078	2.0	4.0	3.0	1.5	7101	chr3L	402693	intergenic	not near genes	chr3L	406244	intergenic	not near genes	chr3L	409794	intergenic	not near genes	chr3L_6_405001	chr3L_405001	S2R+
409	chr3L	535023	535077	chr3L	535130	535184		9	105	0.5	0.5	0.5	6.0	161	chr3L	535023	intron	klar -	chr3L	535104	intron	klar -	chr3L	535184	intron	klar -	chr3L_9_535001	chr3L_535001	S2R+
410	chr3L	614820	614852	chr3L	626047	626083		15	11230	78.0	18.0	48.0	0.3	11263	chr3L	614820	intergenic	not near genes	chr3L	620452	intergenic	CG43337 -	chr3L	626083	intergenic	not near genes	chr3L_15_620001	chr3L_620001	S2R+
411	chr3L	642882	642940	chr3L	643080	643153		18	210	8.0	0.0	4.0	3.6	271	chr3L	642882	5` UTR	CR43334 +	chr3L	643018	5` UTR	CR43334 +	chr3L	643153	5` UTR	CR43334 +	chr3L_18_640001	chr3L_640001	S2R+
412	chr3L	605792	605839	chr3L	661734	661781		20	55942	24.5	56.5	40.5	0.5	55989	chr3L	605792	intron	Reg-2 -	chr3L	633786	5` UTR	CR43334 +	chr3L	661781	intergenic	not near genes	chr3L_20_630001	chr3L_630001	S2R+
413	chr3L	670396	670453	chr3L	670558	670616		15	163	3.0	1.0	2.0	5.0	220	chr3L	670396	intergenic	not near genes	chr3L	670506	intergenic	not near genes	chr3L	670616	intergenic	not near genes	chr3L_15_670001	chr3L_670001	S2R+
414	chr3L	705876	705911	chr3L	705997	706032		6	120	2.5	2.0	2.2	1.9	156	chr3L	705876	intergenic	CG13895 -,CR44514 +	chr3L	705954	3` UTR	CG13895 -	chr3L	706032	3` UTR	CG13895 -	chr3L_6_705001	chr3L_705001	S2R+
415	chr3L	732796	732827	chr3L	733043	733074		7	246	3.0	1.0	2.0	2.3	278	chr3L	732796	intergenic	not near genes	chr3L	732935	intergenic	not near genes	chr3L	733074	intergenic	not near genes	chr3L_7_730001	chr3L_730001	S2R+
416	chr3L	802565	802566	chr3L	11777678	11777678		4	10975112	18.0	8.0	13.0	0.3	10975113	chr3L	802565	intergenic	not near genes	chr3L	6290122	intergenic	not near genes	chr3L	11777678	intron,intron	Pi3K68D -,CG14131 +	chr3L_4_6290001	chr3L_6290001	S2R+
417	chr3L	822069	822095	chr3L	822173	822200		12	104	0.0	10.5	5.2	1.9	131	chr3L	822069	intergenic	not near genes	chr3L	822134	intergenic	not near genes	chr3L	822200	intergenic	not near genes	chr3L_12_820001	chr3L_820001	S2R+
418	chr3L	857983	858022	chr3L	866479	866519	Tirant	10	8504	3.0	3.0	3.0	2.5	8536	chr3L	857983	intergenic	not near genes	chr3L	862251	intergenic	not near genes	chr3L	866519	5` UTR	CG12502 +	chr3L_10_860001	chr3L_860001	S2R+
419	chr3L	933914	933944	chr3L	934042	934070		5	127	1.0	3.5	2.2	1.6	156	chr3L	933914	intron	Glut1 +	chr3L	933992	intron	Glut1 +	chr3L	934070	intron	Glut1 +	chr3L_5_930001	chr3L_930001	S2R+
420	chr3L	939768	939790	chr3L	940914	940936	jockey	8	1146	2.5	4.0	3.2	1.9	1168	chr3L	939768	intron	Glut1 +	chr3L	940352	intron	Glut1 +	chr3L	940936	intron	Glut1 +	chr3L_8_940001	chr3L_940001	S2R+
421	chr3L	958291	958347	chr3L	958399	958456		13	109	2.5	1.5	2.0	4.3	165	chr3L	958291	intron	Glut1 +	chr3L	958374	intron	Glut1 +	chr3L	958456	intron	Glut1 +	chr3L_13_955001	chr3L_955001	S2R+
422	chr3L	1015010	1015053	chr3L	1015144	1015189		10	136	2.0	3.0	2.5	2.9	179	chr3L	1015010	intron	trio -	chr3L	1015100	intron	trio -	chr3L	1015189	intron	trio -	chr3L_10_1015001	chr3L_1015001	S2R+
423	chr3L	1021352	1021398	chr3L	1021457	1021501		11	104	1.5	4.0	2.8	2.9	149	chr3L	1021352	intron	trio -	chr3L	1021426	intron	trio -	chr3L	1021501	intron	trio -	chr3L_11_1020001	chr3L_1020001	S2R+
424	chr3L	1031551	1031596	chr3L	1031652	1031697		15	99	3.5	2.5	3.0	3.8	146	chr3L	1031551	intron	trio -	chr3L	1031624	intron	trio -	chr3L	1031697	intron	trio -	chr3L_15_1030001	chr3L_1030001	S2R+
425	chr3L	1040523	1040575	chr3L	1040632	1040684		11	108	2.0	1.5	1.8	3.9	161	chr3L	1040523	intron	bab1 -	chr3L	1040604	intron	bab1 -	chr3L	1040684	intron	bab1 -	chr3L_11_1040001	chr3L_1040001	S2R+
426	chr3L	1219574	1219586	chr3L	1227332	1227344	412	4	7757	6.0	2.5	4.2	0.8	7770	chr3L	1219574	intron	mwh +	chr3L	1223459	intron	mwh +	chr3L	1227344	intron	mwh +	chr3L_4_1220001	chr3L_1220001	S2R+
427	chr3L	1219594	1219606	chr3L	1227330	1227362	412	5	7746	5.0	2.0	3.5	1.1	7768	chr3L	1219594	intron	mwh +	chr3L	1223478	intron	mwh +	chr3L	1227362	intron	mwh +	chr3L_5_1220001	chr3L_1220001	S2R+
428	chr3L	1276334	1276375	chr3L	1276453	1276495		4	114	1.5	1.0	1.2	1.8	161	chr3L	1276334	intron	CG32333 +	chr3L	1276414	intron	CG32333 +	chr3L	1276495	intron	CG32333 +	chr3L_4_1275001	chr3L_1275001	S2R+
429	chr3L	1347143	1347190	chr3L	1347251	1347299		17	109	3.0	4.5	3.8	3.5	156	chr3L	1347143	intron	Ptp61F -	chr3L	1347221	intron	Ptp61F -	chr3L	1347299	intron	Ptp61F -	chr3L_17_1345001	chr3L_1345001	S2R+
430	chr3L	1505976	1506014	chr3L	1513598	1513636	17.6	5	7622	2.0	3.5	2.8	1.3	7660	chr3L	1505976	intron,intron	Psa +,cue -	chr3L	1509806	intron,intron	Psa +,cue -	chr3L	1513636	intron,intron	Psa +,cue -	chr3L_5_1505001	chr3L_1505001	S2R+
431	chr3L	1684005	1684034	chr3L	1684108	1684135		6	101	3.0	2.5	2.8	1.6	130	chr3L	1684005	intron	CG7991 +	chr3L	1684070	intron	CG7991 +	chr3L	1684135	intron	CG7991 +	chr3L_6_1680001	chr3L_1680001	S2R+
432	chr3L	2168753	2168797	chr3L	2168866	2168911		10	116	5.5	1.0	3.2	2.4	158	chr3L	2168753	exon	CG15879 -	chr3L	2168832	intron	CG15879 -	chr3L	2168911	intron	CG15879 -	chr3L_10_2165001	chr3L_2165001	S2R+
433	chr3L	2199784	2199821	chr3L	2199885	2199922		6	100	1.0	1.0	1.0	3.0	138	chr3L	2199784	intergenic	not near genes	chr3L	2199853	intergenic	not near genes	chr3L	2199922	intergenic	not near genes	chr3L_6_2195001	chr3L_2195001	S2R+
434	chr3L	2307978	2308014	chr3L	2308109	2308128		6	128	1.5	0.5	1.0	3.0	150	chr3L	2307978	intergenic	not near genes	chr3L	2308053	intergenic	not near genes	chr3L	2308128	intergenic	not near genes	chr3L_6_2305001	chr3L_2305001	S2R+
435	chr3L	2447480	2447520	chr3L	2456661	2456701	roo	7	9180	1.5	3.0	2.2	2.2	9221	chr3L	2447480	intron	CG45186 +	chr3L	2452090	intron	CG45186 +	chr3L	2456701	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	S2R+
436	chr3L	2683923	2683972	chr3L	2684024	2684073		4	101	2.5	0.5	1.5	1.6	150	chr3L	2683923	intron	Fife -	chr3L	2683998	intron	Fife -	chr3L	2684073	intron	Fife -	chr3L_4_2680001	chr3L_2680001	S2R+
437	chr3L	2795703	2795748	chr3L	2795851	2795896		5	148	1.0	1.5	1.2	2.3	193	chr3L	2795703	intron	CG43444 -	chr3L	2795800	intron	CG43444 -	chr3L	2795896	intron	CG43444 -	chr3L_5_2795001	chr3L_2795001	S2R+
438	chr3L	2850126	2850178	chr3L	2850248	2850300		5	121	0.5	1.5	1.0	2.5	174	chr3L	2850126	intron	CG43444 -	chr3L	2850213	intron	CG43444 -	chr3L	2850300	intron	CG43444 -	chr3L_5_2850001	chr3L_2850001	S2R+
439	chr3L	2980033	2980075	chr3L	2982793	2982834		8	2761	21.5	33.5	27.5	0.3	2801	chr3L	2980033	intergenic	not near genes	chr3L	2981434	exon	CG2107 +	chr3L	2982834	exon	CG2107 +	chr3L_8_2980001	chr3L_2980001	S2R+
440	chr3L	3061283	3061315	chr3L	3069888	3069923	Tirant	5	8607	2.5	5.0	3.8	1.0	8640	chr3L	3061283	intron	CG32486 -	chr3L	3065603	intron	CG32486 -	chr3L	3069923	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	S2R+
441	chr3L	3140810	3140833	chr3L	3141368	3141391		11	558	0.5	2.5	1.5	4.4	581	chr3L	3140810	intron	CG11537 -	chr3L	3141100	intron	CG11537 -	chr3L	3141391	intron	CG11537 -	chr3L_11_3140001	chr3L_3140001	S2R+
442	chr3L	3281418	3281429	chr3L	3281936	3281949	Doc	4	519	3.5	2.5	3.0	1.0	531	chr3L	3281418	intron	CG12017 +	chr3L	3281684	intron	CG12017 +	chr3L	3281949	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	S2R+
443	chr3L	3284415	3284467	chr3L	3284523	3284575		8	108	2.0	5.0	3.5	1.8	160	chr3L	3284415	intron	CG12017 +	chr3L	3284495	intron	CG12017 +	chr3L	3284575	intron	CG12017 +	chr3L_8_3280001	chr3L_3280001	S2R+
444	chr3L	3306499	3306549	chr3L	3306612	3306662		7	113	0.0	1.0	0.5	4.7	163	chr3L	3306499	intron	ZnT63C +	chr3L	3306580	intron	ZnT63C +	chr3L	3306662	intron	ZnT63C +	chr3L_7_3305001	chr3L_3305001	S2R+
445	chr3L	3451351	3451381	chr3L	3451476	3451506		7	125	1.0	3.0	2.0	2.3	155	chr3L	3451351	intron	eIF5B -	chr3L	3451428	intron	eIF5B -	chr3L	3451506	intron	eIF5B -	chr3L_7_3450001	chr3L_3450001	S2R+
446	chr3L	3619377	3619419	chr3L	3619496	3619538		6	119	2.5	2.0	2.2	1.9	161	chr3L	3619377	intergenic	not near genes	chr3L	3619458	intergenic	not near genes	chr3L	3619538	intergenic	not near genes	chr3L_6_3615001	chr3L_3615001	S2R+
447	chr3L	4044729	4044740	chr3L	4045050	4045061		4	321	3.5	2.0	2.8	1.1	332	chr3L	4044729	intergenic	not near genes	chr3L	4044895	intergenic	not near genes	chr3L	4045061	intergenic	not near genes	chr3L_4_4040001	chr3L_4040001	S2R+
448	chr3L	4298544	4298581	chr3L	4298649	4298671		4	100	4.0	2.0	3.0	1.0	127	chr3L	4298544	exon	dyl -	chr3L	4298608	5` UTR	dyl -	chr3L	4298671	5` UTR	dyl -	chr3L_4_4295001	chr3L_4295001	S2R+
449	chr3L	4328717	4328729	chr3L	4336239	4336252	412	4	7522	1.0	1.0	1.0	2.0	7535	chr3L	4328717	intron	Cip4 -	chr3L	4332484	intron	Cip4 -	chr3L	4336252	intron	Cip4 -	chr3L_4_4330001	chr3L_4330001	S2R+
450	chr3L	4364211	4364228	chr3L	4364325	4364342		5	113	0.5	2.0	1.2	2.3	131	chr3L	4364211	intergenic	Cip4 -,mRpS6 +	chr3L	4364276	intergenic	Cip4 -,mRpS6 +	chr3L	4364342	intergenic	mRpS6 +,Cip4 -	chr3L_5_4360001	chr3L_4360001	S2R+
451	chr3L	4521038	4521093	chr3L	4521433	4521479		4	392	2.0	1.5	1.8	1.4	441	chr3L	4521038	intron	Tie -	chr3L	4521258	intron	Tie -	chr3L	4521479	intron	Tie -	chr3L_4_4520001	chr3L_4520001	S2R+
452	chr3L	4536333	4536385	chr3L	4536459	4536511		5	124	2.0	0.0	1.0	2.5	178	chr3L	4536333	exon	CG11353 +	chr3L	4536422	intron	CG11353 +	chr3L	4536511	intron	CG11353 +	chr3L_5_4535001	chr3L_4535001	S2R+
453	chr3L	4797939	4797987	chr3L	4798044	4798090		20	103	0.0	4.5	2.2	6.2	151	chr3L	4797939	intergenic	not near genes	chr3L	4798014	intergenic	not near genes	chr3L	4798090	intergenic	not near genes	chr3L_20_4795001	chr3L_4795001	S2R+
454	chr3L	4858286	4858335	chr3L	4858399	4858450		13	114	2.0	5.5	3.8	2.7	164	chr3L	4858286	intergenic	not near genes	chr3L	4858368	intergenic	not near genes	chr3L	4858450	intergenic	not near genes	chr3L_13_4855001	chr3L_4855001	S2R+
455	chr3L	4990722	4990776	chr3L	4990861	4990914		15	138	2.5	1.5	2.0	5.0	192	chr3L	4990722	intron	Con -	chr3L	4990818	intron	Con -	chr3L	4990914	intron	Con -	chr3L_15_4990001	chr3L_4990001	S2R+
456	chr3L	5034136	5034188	chr3L	5043311	5043365	roo	7	9176	2.5	1.0	1.8	2.5	9229	chr3L	5034136	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043365	intron	Con -	chr3L_7_5035001	chr3L_5035001	S2R+
457	chr3L	5045434	5045468	chr3L	5050240	5050274	Doc	7	4806	1.0	0.5	0.8	3.9	4840	chr3L	5045434	intron	Con -	chr3L	5047854	intron	Con -	chr3L	5050274	intron	Con -	chr3L_7_5045001	chr3L_5045001	S2R+
458	chr3L	5228418	5228458	chr3L	5228523	5228560		17	102	3.5	1.0	2.2	5.3	142	chr3L	5228418	intron	shep -	chr3L	5228489	intron	shep -	chr3L	5228560	intron	shep -	chr3L_17_5225001	chr3L_5225001	S2R+
459	chr3L	5306648	5306659	chr3L	5306763	5306774		5	115	0.0	1.0	0.5	3.3	126	chr3L	5306648	intergenic	not near genes	chr3L	5306711	intergenic	not near genes	chr3L	5306774	intergenic	not near genes	chr3L_5_5305001	chr3L_5305001	S2R+
460	chr3L	5384288	5384342	chr3L	5384393	5384445		9	103	0.5	3.0	1.8	3.2	157	chr3L	5384288	intergenic	not near genes	chr3L	5384366	intergenic	not near genes	chr3L	5384445	intergenic	not near genes	chr3L_9_5380001	chr3L_5380001	S2R+
461	chr3L	5388181	5388226	chr3L	5388530	5388575		7	349	1.0	1.0	1.0	3.5	394	chr3L	5388181	intergenic	not near genes	chr3L	5388378	intergenic	not near genes	chr3L	5388575	intergenic	not near genes	chr3L_7_5385001	chr3L_5385001	S2R+
462	chr3L	5426748	5426758	chr3L	5426871	5426882		5	124	1.0	1.0	1.0	2.5	134	chr3L	5426748	intron	CG34391 +	chr3L	5426815	intron	CG34391 +	chr3L	5426882	intron	CG34391 +	chr3L_5_5425001	chr3L_5425001	S2R+
463	chr3L	5558612	5558646	chr3L	5558750	5558785		7	139	2.0	4.0	3.0	1.8	173	chr3L	5558612	intergenic	not near genes	chr3L	5558698	intergenic	not near genes	chr3L	5558785	intergenic	not near genes	chr3L_7_5555001	chr3L_5555001	S2R+
464	chr3L	5641219	5641259	chr3L	5641311	5641349		15	99	2.0	1.5	1.8	5.4	130	chr3L	5641219	intron	Blimp-1 +	chr3L	5641284	intron	Blimp-1 +	chr3L	5641349	intron	Blimp-1 +	chr3L_15_5640001	chr3L_5640001	S2R+
465	chr3L	5926293	5926343	chr3L	5926508	5926558	BS	4	213	0.0	2.0	1.0	2.0	265	chr3L	5926293	intron	Vap-33B +	chr3L	5926426	intron	Vap-33B +	chr3L	5926558	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	S2R+
466	chr3L	5983809	5983864	chr3L	5983955	5984010		4	146	2.5	0.0	1.2	1.8	201	chr3L	5983809	3` UTR	CR45439 -	chr3L	5983910	intergenic	CR45439 -,CR45440 -	chr3L	5984010	intergenic	CR45440 -,CR45439 -	chr3L_4_5980001	chr3L_5980001	S2R+
467	chr3L	5992582	5992601	chr3L	5992708	5992728		5	127	2.0	1.0	1.5	2.0	146	chr3L	5992582	intergenic	not near genes	chr3L	5992655	intergenic	not near genes	chr3L	5992728	intergenic	not near genes	chr3L_5_5990001	chr3L_5990001	S2R+
468	chr3L	6022319	6022351	chr3L	6022423	6022455		6	104	0.0	3.0	1.5	2.4	136	chr3L	6022319	intron	PVRAP +	chr3L	6022387	intron	PVRAP +	chr3L	6022455	intron	PVRAP +	chr3L_6_6020001	chr3L_6020001	S2R+
469	chr3L	6052630	6052662	chr3L	6052740	6052772		7	107	5.0	6.0	5.5	1.1	142	chr3L	6052630	exon	Jon65Aii +	chr3L	6052701	intron	Jon65Aii +	chr3L	6052772	exon	Jon65Aii +	chr3L_7_6050001	chr3L_6050001	S2R+
470	chr3L	6220917	6220945	chr3L	6230094	6230122	roo	5	9176	0.0	3.0	1.5	2.0	9205	chr3L	6220917	5` UTR	pncr008:3L +	chr3L	6225520	intergenic	not near genes	chr3L	6230122	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	S2R+
471	chr3L	6334636	6334670	chr3L	6334743	6334779		8	106	3.5	3.5	3.5	1.8	143	chr3L	6334636	intron	CG13300 -	chr3L	6334708	intron	CG13300 -	chr3L	6334779	intron	CG13300 -	chr3L_8_6330001	chr3L_6330001	S2R+
472	chr3L	6503983	6504022	chr3L	6505591	6505630		6	1607	1.0	1.0	1.0	3.0	1647	chr3L	6503983	intron	sfl +	chr3L	6504806	intron	sfl +	chr3L	6505630	intron	sfl +	chr3L_6_6500001	chr3L_6500001	S2R+
473	chr3L	6855906	6855954	chr3L	6860716	6860764	Doc	7	4810	0.0	1.0	0.5	4.7	4858	chr3L	6855906	intergenic	not near genes	chr3L	6858335	intergenic	not near genes	chr3L	6860764	intergenic	not near genes	chr3L_7_6855001	chr3L_6855001	S2R+
474	chr3L	6989277	6989321	chr3L	6989378	6989424		4	102	2.0	2.0	2.0	1.3	147	chr3L	6989277	intergenic	not near genes	chr3L	6989350	intergenic	not near genes	chr3L	6989424	intergenic	not near genes	chr3L_4_6985001	chr3L_6985001	S2R+
475	chr3L	6944289	6944330	chr3L	6992044	6992087		5	47755	3.0	6.5	4.8	0.9	47798	chr3L	6944289	intron	tow +	chr3L	6968188	3` UTR	Mis12 -	chr3L	6992087	intron	bin +	chr3L_5_6965001	chr3L_6965001	S2R+
476	chr3L	7033167	7033205	chr3L	7033271	7033312		6	105	1.0	2.5	1.8	2.1	145	chr3L	7033167	intron	Mp +	chr3L	7033240	intron	Mp +	chr3L	7033312	intron	Mp +	chr3L_6_7030001	chr3L_7030001	S2R+
477	chr3L	7216091	7216136	chr3L	7216194	7216239		5	103	2.5	1.0	1.8	1.8	148	chr3L	7216091	intergenic	not near genes	chr3L	7216165	intergenic	not near genes	chr3L	7216239	intergenic	not near genes	chr3L_5_7215001	chr3L_7215001	S2R+
478	chr3L	7217909	7217943	chr3L	7218047	7218084		5	140	1.0	2.5	1.8	1.8	175	chr3L	7217909	intergenic	not near genes	chr3L	7217996	intergenic	not near genes	chr3L	7218084	intergenic	not near genes	chr3L_5_7215001	chr3L_7215001	S2R+
479	chr3L	7358273	7358316	chr3L	7359579	7359624		6	1308	5.5	9.5	7.5	0.7	1351	chr3L	7358273	exon	pst -	chr3L	7358948	exon	pst -	chr3L	7359624	intron	pst -	chr3L_6_7355001	chr3L_7355001	S2R+
480	chr3L	7411652	7411693	chr3L	7411764	7411805		4	112	1.0	0.0	0.5	2.7	153	chr3L	7411652	intergenic	not near genes	chr3L	7411728	intergenic	not near genes	chr3L	7411805	intergenic	not near genes	chr3L_4_7410001	chr3L_7410001	S2R+
481	chr3L	7591120	7591176	chr3L	7591236	7591292		4	115	2.0	1.0	1.5	1.6	172	chr3L	7591120	intergenic	CG7716 -	chr3L	7591206	intergenic	CG7716 -	chr3L	7591292	intergenic	CG7716 -	chr3L_4_7590001	chr3L_7590001	S2R+
482	chr3L	7801722	7801766	chr3L	7801986	7802030		4	264	2.5	1.5	2.0	1.3	308	chr3L	7801722	intron	CG32369 -	chr3L	7801876	intron	CG32369 -	chr3L	7802030	intron	CG32369 -	chr3L_4_7800001	chr3L_7800001	S2R+
483	chr3L	7835397	7835447	chr3L	7835500	7835549		7	102	1.0	1.0	1.0	3.5	152	chr3L	7835397	intron	Pdp1 -	chr3L	7835473	intron	Pdp1 -	chr3L	7835549	intron	Pdp1 -	chr3L_7_7835001	chr3L_7835001	S2R+
484	chr3L	8208108	8208154	chr3L	8208261	8208310		6	156	0.5	0.0	0.2	5.0	202	chr3L	8208108	intergenic	not near genes	chr3L	8208209	intergenic	not near genes	chr3L	8208310	intergenic	not near genes	chr3L_6_8205001	chr3L_8205001	S2R+
485	chr3L	8295775	8295823	chr3L	8295958	8296003		7	182	1.0	1.5	1.2	3.2	228	chr3L	8295775	intergenic	CG7201 -	chr3L	8295889	intergenic	not near genes	chr3L	8296003	intergenic	not near genes	chr3L_7_8295001	chr3L_8295001	S2R+
486	chr3L	8481751	8481799	chr3L	8490935	8490981	roo	5	9184	2.5	2.0	2.2	1.6	9230	chr3L	8481751	intron	CG43163 -	chr3L	8486366	intron	CG43163 -	chr3L	8490981	intron	CG43163 -	chr3L_5_8485001	chr3L_8485001	S2R+
487	chr3L	9003922	9003958	chr3L	9004032	9004068		6	110	4.5	1.0	2.8	1.6	146	chr3L	9003922	intergenic	not near genes	chr3L	9003995	intergenic	not near genes	chr3L	9004068	intergenic	not near genes	chr3L_6_9000001	chr3L_9000001	S2R+
488	chr3L	9076913	9076949	chr3L	9084496	9084530	412	6	7583	2.5	1.5	2.0	2.0	7617	chr3L	9076913	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084530	exon	Tequila +	chr3L_6_9080001	chr3L_9080001	S2R+
489	chr3L	9270590	9270645	chr3L	9278370	9278402	roo	6	7776	0.5	1.5	1.0	3.0	7812	chr3L	9270590	intron	GluRIB +	chr3L	9274496	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	S2R+
490	chr3L	9515505	9515543	chr3L	9515810	9515847		4	305	1.0	1.5	1.2	1.8	342	chr3L	9515505	intron	CG33700 -	chr3L	9515676	intron	CG33700 -	chr3L	9515847	intron	CG33700 -	chr3L_4_9515001	chr3L_9515001	S2R+
491	chr3L	9533737	9533785	chr3L	9541322	9541365	412	6	7582	2.5	2.5	2.5	1.7	7628	chr3L	9533737	intergenic	not near genes	chr3L	9537551	intergenic	not near genes	chr3L	9541365	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	S2R+
492	chr3L	9639269	9639295	chr3L	9639592	9639618		5	323	2.5	3.0	2.8	1.3	349	chr3L	9639269	intron	fry -	chr3L	9639444	intron,exon	fry -,CG18179 +	chr3L	9639618	intron,exon	fry -,CG18179 +	chr3L_5_9635001	chr3L_9635001	S2R+
493	chr3L	9689483	9689535	chr3L	9689588	9689640		8	105	1.5	1.0	1.2	3.6	157	chr3L	9689483	intron	CG6767 -	chr3L	9689562	intron	CG6767 -	chr3L	9689640	intron	CG6767 -	chr3L_8_9685001	chr3L_9685001	S2R+
494	chr3L	9697753	9697783	chr3L	9697870	9697900		6	116	1.0	1.5	1.2	2.7	147	chr3L	9697753	intergenic	not near genes	chr3L	9697826	intergenic	not near genes	chr3L	9697900	intergenic	UbcD4 +	chr3L_6_9695001	chr3L_9695001	S2R+
495	chr3L	9848501	9848517	chr3L	9848602	9848618		4	101	0.0	0.0	0.0	4.0	117	chr3L	9848501	intron	RasGAP1 -	chr3L	9848560	intron	RasGAP1 -	chr3L	9848618	intron	RasGAP1 -	chr3L_4_9845001	chr3L_9845001	S2R+
496	chr3L	9918859	9918906	chr3L	9918979	9919026		5	119	0.5	0.5	0.5	3.3	167	chr3L	9918859	intron	CG34356 +	chr3L	9918942	intron	CG34356 +	chr3L	9919026	intron	CG34356 +	chr3L_5_9915001	chr3L_9915001	S2R+
497	chr3L	9951174	9951225	chr3L	9951282	9951337		4	110	1.5	0.5	1.0	2.0	163	chr3L	9951174	intron	CG34356 +	chr3L	9951256	intron	CG34356 +	chr3L	9951337	intron	CG34356 +	chr3L_4_9950001	chr3L_9950001	S2R+
498	chr3L	10308718	10308758	chr3L	10308820	10308858		5	100	1.0	2.5	1.8	1.8	140	chr3L	10308718	intergenic	not near genes	chr3L	10308788	intergenic	not near genes	chr3L	10308858	intergenic	not near genes	chr3L_5_10305001	chr3L_10305001	S2R+
499	chr3L	10553074	10553098	chr3L	10553181	10553204		4	107	1.0	0.5	0.8	2.2	130	chr3L	10553074	intron	A2bp1 +	chr3L	10553139	intron	A2bp1 +	chr3L	10553204	intron	A2bp1 +	chr3L_4_10550001	chr3L_10550001	S2R+
500	chr3L	10581947	10581977	chr3L	10582042	10582091		6	107	3.0	3.0	3.0	1.5	144	chr3L	10581947	intron	A2bp1 +	chr3L	10582019	intron	A2bp1 +	chr3L	10582091	intron	A2bp1 +	chr3L_6_10580001	chr3L_10580001	S2R+
501	chr3L	10584262	10584300	chr3L	10584374	10584412		7	111	0.0	0.5	0.2	5.8	150	chr3L	10584262	intron	A2bp1 +	chr3L	10584337	intron	A2bp1 +	chr3L	10584412	intron	A2bp1 +	chr3L_7_10580001	chr3L_10580001	S2R+
502	chr3L	10600432	10600476	chr3L	10600537	10600583		5	106	1.0	0.5	0.8	2.8	151	chr3L	10600432	intergenic	not near genes	chr3L	10600508	intergenic	not near genes	chr3L	10600583	intergenic	not near genes	chr3L_5_10600001	chr3L_10600001	S2R+
503	chr3L	10645178	10645233	chr3L	10646681	10646736		14	1499	2.5	2.5	2.5	4.0	1558	chr3L	10645178	intron	CG32066 -	chr3L	10645957	intron	CG32066 -	chr3L	10646736	intron	CG32066 -	chr3L_14_10645001	chr3L_10645001	S2R+
504	chr3L	10705549	10705589	chr3L	10705652	10705689		5	102	1.0	1.0	1.0	2.5	140	chr3L	10705549	intergenic	not near genes	chr3L	10705619	intergenic	not near genes	chr3L	10705689	intergenic	not near genes	chr3L_5_10705001	chr3L_10705001	S2R+
505	chr3L	10762812	10762855	chr3L	10762921	10762964		7	109	2.5	2.5	2.5	2.0	152	chr3L	10762812	intergenic	not near genes	chr3L	10762888	intergenic	not near genes	chr3L	10762964	intergenic	not near genes	chr3L_7_10760001	chr3L_10760001	S2R+
506	chr3L	10856280	10856314	chr3L	10856566	10856593		4	284	2.5	2.0	2.2	1.2	313	chr3L	10856280	intergenic	not near genes	chr3L	10856436	intergenic	not near genes	chr3L	10856593	intergenic	not near genes	chr3L_4_10855001	chr3L_10855001	S2R+
507	chr3L	10932306	10932339	chr3L	11204033	11204066		4	271727	11.5	2.0	6.8	0.5	271760	chr3L	10932306	intergenic	not near genes	chr3L	11068186	3` UTR,exon	CG45101 +,SuUR +	chr3L	11204066	intron	Plod -	chr3L_4_11065001	chr3L_11065001	S2R+
508	chr3L	11021261	11021304	chr3L	11021452	11021495		8	191	2.5	2.5	2.5	2.3	234	chr3L	11021261	intergenic	not near genes	chr3L	11021378	intergenic	not near genes	chr3L	11021495	intergenic	not near genes	chr3L_8_11020001	chr3L_11020001	S2R+
509	chr3L	11029414	11029435	chr3L	11029549	11029571		4	136	0.5	1.5	1.0	2.0	157	chr3L	11029414	3` UTR	CG32081 +	chr3L	11029492	intergenic	CG32081 +	chr3L	11029571	intergenic	CG32081 +	chr3L_4_11025001	chr3L_11025001	S2R+
510	chr3L	11105279	11105312	chr3L	11107015	11107048	X-element	4	1736	2.5	1.5	2.0	1.3	1769	chr3L	11105279	intergenic	not near genes	chr3L	11106164	intergenic	not near genes	chr3L	11107048	exon	CG32073 -	chr3L_4_11105001	chr3L_11105001	S2R+
511	chr3L	11264447	11264472	chr3L	11271421	11271449	17.6	4	6976	1.0	1.0	1.0	2.0	7002	chr3L	11264447	intergenic	not near genes	chr3L	11267948	intergenic	not near genes	chr3L	11271449	intergenic	not near genes	chr3L_4_11265001	chr3L_11265001	S2R+
512	chr3L	11329691	11329713	chr3L	11332894	11332942	jockey	6	3224	1.5	1.5	1.5	2.4	3251	chr3L	11329691	intergenic	not near genes	chr3L	11331316	intergenic	not near genes	chr3L	11332942	intergenic	not near genes	chr3L_6_11330001	chr3L_11330001	S2R+
513	chr3L	11397556	11397593	chr3L	11397687	11397727		5	130	1.0	3.0	2.0	1.7	171	chr3L	11397556	exon	CG44362 +	chr3L	11397642	exon	CG44362 +	chr3L	11397727	exon	CG44362 +	chr3L_5_11395001	chr3L_11395001	S2R+
514	chr3L	11435536	11435568	chr3L	11435729	11435762		10	194	5.0	1.0	3.0	2.5	226	chr3L	11435536	intergenic	CG6149 -,CR44548 +	chr3L	11435649	5` UTR	CR44548 +	chr3L	11435762	5` UTR	CR44548 +	chr3L_10_11435001	chr3L_11435001	S2R+
515	chr3L	11587915	11587942	chr3L	11588015	11588043		4	101	1.0	0.5	0.8	2.2	128	chr3L	11587915	intergenic	rt -	chr3L	11587979	intergenic	rt -	chr3L	11588043	intergenic	rt -	chr3L_4_11585001	chr3L_11585001	S2R+
516	chr3L	11743992	11744046	chr3L	11744125	11744179		4	132	1.0	0.5	0.8	2.2	187	chr3L	11743992	exon	CG6024 -	chr3L	11744086	intron	CG6024 -	chr3L	11744179	intron	CG6024 -	chr3L_4_11740001	chr3L_11740001	S2R+
517	chr3L	802566	802566	chr3L	11777678	11777678		4	10975112	18.0	8.0	13.0	0.3	10975112	chr3L	802566	intergenic	not near genes	chr3L	6290122	intergenic	not near genes	chr3L	11777678	intron,intron	Pi3K68D -,CG14131 +	chr3L_4_6290001	chr3L_6290001	S2R+
518	chr3L	11796562	11796599	chr3L	11796666	11796710		4	108	2.0	0.0	1.0	2.0	148	chr3L	11796562	exon	Klp68D +	chr3L	11796636	intron	Klp68D +	chr3L	11796710	intron	Klp68D +	chr3L_4_11795001	chr3L_11795001	S2R+
519	chr3L	11929044	11929093	chr3L	11929175	11929224		4	130	1.5	1.5	1.5	1.6	180	chr3L	11929044	intron,intron	CG44837 -,byn +	chr3L	11929134	intron,intron	CG44837 -,byn +	chr3L	11929224	intron,intron	CG44837 -,byn +	chr3L_4_11925001	chr3L_11925001	S2R+
520	chr3L	11931371	11931380	chr3L	11931475	11931488		4	106	3.0	3.5	3.2	1.0	117	chr3L	11931371	intron,intron	CG44837 -,byn +	chr3L	11931430	intron,intron	CG44837 -,byn +	chr3L	11931488	intron,intron	CG44837 -,byn +	chr3L_4_11930001	chr3L_11930001	S2R+
521	chr3L	11984545	11984585	chr3L	11984661	11984709		5	116	3.5	0.0	1.8	1.8	164	chr3L	11984545	intergenic	CG6938 +	chr3L	11984627	intergenic	CG6938 +	chr3L	11984709	intergenic	CG6938 +	chr3L_5_11980001	chr3L_11980001	S2R+
522	chr3L	12066346	12066402	chr3L	12066608	12066664		7	262	1.0	0.5	0.8	3.9	318	chr3L	12066346	intergenic	not near genes	chr3L	12066505	intergenic	not near genes	chr3L	12066664	intergenic	not near genes	chr3L_7_12065001	chr3L_12065001	S2R+
523	chr3L	12304082	12304114	chr3L	12304183	12304215		4	101	3.0	1.0	2.0	1.3	133	chr3L	12304082	intergenic	not near genes	chr3L	12304148	intergenic	not near genes	chr3L	12304215	intergenic	not near genes	chr3L_4_12300001	chr3L_12300001	S2R+
524	chr3L	12352118	12352147	chr3L	12352244	12352273		5	126	0.5	3.0	1.8	1.8	155	chr3L	12352118	intergenic	not near genes	chr3L	12352196	intergenic	not near genes	chr3L	12352273	intergenic	not near genes	chr3L_5_12350001	chr3L_12350001	S2R+
525	chr3L	12356449	12356478	chr3L	12356625	12356653		4	176	1.5	1.0	1.2	1.8	204	chr3L	12356449	intergenic	not near genes	chr3L	12356551	intergenic	not near genes	chr3L	12356653	intergenic	not near genes	chr3L_4_12355001	chr3L_12355001	S2R+
526	chr3L	12369518	12369547	chr3L	12369633	12369662		4	115	0.0	0.0	0.0	4.0	144	chr3L	12369518	intron	Ncc69 -	chr3L	12369590	intron	Ncc69 -	chr3L	12369662	intron	Ncc69 -	chr3L_4_12365001	chr3L_12365001	S2R+
527	chr3L	12470699	12470742	chr3L	12545370	12545413		5	74671	15.0	8.0	11.5	0.4	74714	chr3L	12470699	intergenic	not near genes	chr3L	12508056	3` UTR	sti -	chr3L	12545413	intron	sowah -	chr3L_5_12505001	chr3L_12505001	S2R+
528	chr3L	12565403	12565441	chr3L	12565508	12565546		5	104	1.5	1.0	1.2	2.3	143	chr3L	12565403	intron	sowah -	chr3L	12565474	intron	sowah -	chr3L	12565546	intron	sowah -	chr3L_5_12565001	chr3L_12565001	S2R+
529	chr3L	12647934	12647955	chr3L	12648034	12648055		4	100	4.0	1.5	2.8	1.1	121	chr3L	12647934	5` UTR	CR32111 +	chr3L	12647994	5` UTR	CR32111 +	chr3L	12648055	5` UTR	CR32111 +	chr3L_4_12645001	chr3L_12645001	S2R+
530	chr3L	13085462	13085485	chr3L	13085582	13085608		4	123	1.0	1.5	1.2	1.8	146	chr3L	13085462	intergenic	not near genes	chr3L	13085535	intergenic	not near genes	chr3L	13085608	intergenic	not near genes	chr3L_4_13085001	chr3L_13085001	S2R+
531	chr3L	13159750	13159782	chr3L	13160039	13160071		4	289	0.5	2.5	1.5	1.6	321	chr3L	13159750	intergenic	not near genes	chr3L	13159910	intergenic	not near genes	chr3L	13160071	intergenic	not near genes	chr3L_4_13155001	chr3L_13155001	S2R+
532	chr3L	13267293	13267310	chr3L	13267431	13267448		5	138	1.5	1.0	1.2	2.3	155	chr3L	13267293	intron	caps +	chr3L	13267370	intron	caps +	chr3L	13267448	intron	caps +	chr3L_5_13265001	chr3L_13265001	S2R+
533	chr3L	13382498	13382540	chr3L	13382627	13382669		7	127	1.5	1.5	1.5	2.8	171	chr3L	13382498	intergenic	ImpL1 +	chr3L	13382584	intergenic	ImpL1 +	chr3L	13382669	intergenic	ImpL1 +	chr3L_7_13380001	chr3L_13380001	S2R+
534	chr3L	13901556	13901598	chr3L	13901658	13901700		4	102	0.0	3.5	1.8	1.4	144	chr3L	13901556	intron	dysc -	chr3L	13901628	intron	dysc -	chr3L	13901700	5` UTR	dysc -	chr3L_4_13900001	chr3L_13900001	S2R+
535	chr3L	14036659	14036691	chr3L	14036776	14036809		4	117	1.5	0.0	0.8	2.2	150	chr3L	14036659	3` UTR,exon	pncr014:3L -,CG6661 +	chr3L	14036734	3` UTR,3` UTR	pncr014:3L -,CG6661 +	chr3L	14036809	3` UTR	pncr014:3L -	chr3L_4_14035001	chr3L_14035001	S2R+
536	chr3L	14245546	14245587	chr3L	14245665	14245706	1360	7	118	2.5	1.0	1.8	2.5	160	chr3L	14245546	3` UTR	CR44561 -	chr3L	14245626	3` UTR	CR44561 -	chr3L	14245706	intergenic	CR44561 -,CR44560 +	chr3L_7_14245001	chr3L_14245001	S2R+
537	chr3L	14295967	14296009	chr3L	14296477	14296520	roo	6	511	3.0	3.5	3.2	1.4	553	chr3L	14295967	intron	fz +	chr3L	14296244	intron	fz +	chr3L	14296520	intron	fz +	chr3L_6_14295001	chr3L_14295001	S2R+
538	chr3L	14312003	14312052	chr3L	14316841	14316889	X-element	5	4837	2.0	1.5	1.8	1.8	4886	chr3L	14312003	exon	fz +	chr3L	14314446	intron	fz +	chr3L	14316889	intron	fz +	chr3L_5_14310001	chr3L_14310001	S2R+
539	chr3L	14444700	14444732	chr3L	14444897	14444932		4	199	0.5	0.5	0.5	2.7	232	chr3L	14444700	intron	bbg -	chr3L	14444816	intron	bbg -	chr3L	14444932	intron	bbg -	chr3L_4_14440001	chr3L_14440001	S2R+
540	chr3L	14653887	14653930	chr3L	14654049	14654090		6	162	1.5	1.0	1.2	2.7	203	chr3L	14653887	intron	dlp +	chr3L	14653988	intron	dlp +	chr3L	14654090	intron	dlp +	chr3L_6_14650001	chr3L_14650001	S2R+
541	chr3L	15085038	15085078	chr3L	15086229	15086269	1360	5	1190	0.5	1.5	1.0	2.5	1231	chr3L	15085038	intron	cp309 -	chr3L	15085654	intron	cp309 -	chr3L	15086269	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	S2R+
542	chr3L	15099552	15099591	chr3L	15099878	15099917		5	325	0.5	2.0	1.2	2.3	365	chr3L	15099552	intron	CTPsyn +	chr3L	15099734	intron	CTPsyn +	chr3L	15099917	intron	CTPsyn +	chr3L_5_15095001	chr3L_15095001	S2R+
543	chr3L	15231376	15231422	chr3L	15231490	15231533		7	115	1.5	0.5	1.0	3.5	157	chr3L	15231376	intergenic	not near genes	chr3L	15231454	intergenic	not near genes	chr3L	15231533	intergenic	not near genes	chr3L_7_15230001	chr3L_15230001	S2R+
544	chr3L	15444633	15444685	chr3L	15444752	15444804		5	119	0.0	2.0	1.0	2.5	171	chr3L	15444633	intergenic	not near genes	chr3L	15444718	intergenic	not near genes	chr3L	15444804	intergenic	not near genes	chr3L_5_15440001	chr3L_15440001	S2R+
545	chr3L	15643592	15643618	chr3L	15643904	15643930		6	312	0.0	3.0	1.5	2.4	338	chr3L	15643592	intron	comm3 -	chr3L	15643761	intron	comm3 -	chr3L	15643930	intron	comm3 -	chr3L_6_15640001	chr3L_15640001	S2R+
546	chr3L	15883166	15883214	chr3L	15883484	15883531		4	318	1.0	0.5	0.8	2.2	365	chr3L	15883166	intron	pHCl -	chr3L	15883348	intron	pHCl -	chr3L	15883531	intron	pHCl -	chr3L_4_15880001	chr3L_15880001	S2R+
547	chr3L	15899222	15899247	chr3L	15899809	15899838	jockey	5	591	2.0	1.5	1.8	1.8	616	chr3L	15899222	intergenic	pHCl -	chr3L	15899530	intergenic	not near genes	chr3L	15899838	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	S2R+
548	chr3L	16060172	16060209	chr3L	16060414	16060451		5	241	8.5	7.0	7.8	0.6	279	chr3L	16060172	intron	Mbs +	chr3L	16060312	intron	Mbs +	chr3L	16060451	intron	Mbs +	chr3L_5_16060001	chr3L_16060001	S2R+
549	chr3L	16184093	16184129	chr3L	16188937	16188973	X-element	4	4844	0.5	2.0	1.2	1.8	4880	chr3L	16184093	intergenic	not near genes	chr3L	16186533	intergenic	not near genes	chr3L	16188973	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	S2R+
550	chr3L	16293046	16293052	chr3L	16293278	16293301		4	247	0.5	1.5	1.0	2.0	255	chr3L	16293046	intergenic	not near genes	chr3L	16293174	intergenic	not near genes	chr3L	16293301	intergenic	not near genes	chr3L_4_16290001	chr3L_16290001	S2R+
551	chr3L	16366760	16366799	chr3L	16366914	16366967		7	165	0.5	2.0	1.2	3.2	207	chr3L	16366760	exon	Cpr72Ec -	chr3L	16366864	exon	Cpr72Ec -	chr3L	16366967	exon	Cpr72Ec -	chr3L_7_16365001	chr3L_16365001	S2R+
552	chr3L	16443850	16443877	chr3L	16446215	16446242	Doc	6	2364	0.5	0.5	0.5	4.0	2392	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445046	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446242	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	S2R+
553	chr3L	16457505	16457549	chr3L	16457626	16457669		4	118	0.5	0.5	0.5	2.7	164	chr3L	16457505	intron	CG33158 +	chr3L	16457587	intron	CG33158 +	chr3L	16457669	intron	CG33158 +	chr3L_4_16455001	chr3L_16455001	S2R+
554	chr3L	16474906	16474959	chr3L	16475214	16475267		9	306	1.5	1.0	1.2	4.1	361	chr3L	16474906	intron,intron	CG33158 +,aos -	chr3L	16475086	intron,intron	CG33158 +,aos -	chr3L	16475267	intron,intron	CG33158 +,aos -	chr3L_9_16475001	chr3L_16475001	S2R+
555	chr3L	16563210	16563219	chr3L	16563315	16563325		4	106	3.0	0.0	1.5	1.6	115	chr3L	16563210	intergenic	Mipp1 -	chr3L	16563268	intergenic	Mipp1 -	chr3L	16563325	intergenic	Mipp1 -	chr3L_4_16560001	chr3L_16560001	S2R+
556	chr3L	16616487	16616535	chr3L	16621840	16621888	297	6	5352	0.0	2.0	1.0	3.0	5401	chr3L	16616487	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621888	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	S2R+
557	chr3L	16746804	16746851	chr3L	16746920	16746969		10	117	1.0	2.0	1.5	4.0	165	chr3L	16746804	intergenic	not near genes	chr3L	16746886	intergenic	not near genes	chr3L	16746969	intergenic	not near genes	chr3L_10_16745001	chr3L_16745001	S2R+
558	chr3L	16845002	16845041	chr3L	16845140	16845176		4	137	1.5	1.0	1.2	1.8	174	chr3L	16845002	intergenic	CG9669 -,CG9715 +,TSG101 +	chr3L	16845089	intergenic	CG9669 -,CG9715 +	chr3L	16845176	intergenic	CG9669 -,CG9715 +	chr3L_4_16845001	chr3L_16845001	S2R+
559	chr3L	16945707	16945748	chr3L	16954885	16954923	roo	8	9177	2.0	3.5	2.8	2.1	9216	chr3L	16945707	exon	Obp73a +	chr3L	16950315	intergenic	not near genes	chr3L	16954923	5` UTR	Nc73EF +	chr3L_8_16950001	chr3L_16950001	S2R+
560	chr3L	17026777	17026816	chr3L	17026877	17026920		4	104	2.0	2.0	2.0	1.3	143	chr3L	17026777	exon	Fit2 +	chr3L	17026848	3` UTR	Fit2 +	chr3L	17026920	3` UTR	Fit2 +	chr3L_4_17025001	chr3L_17025001	S2R+
561	chr3L	17084994	17085029	chr3L	17094167	17094202	roo	5	9174	3.5	2.0	2.8	1.3	9208	chr3L	17084994	intron	Rbp6 -	chr3L	17089598	intron	Rbp6 -	chr3L	17094202	intron	Rbp6 -	chr3L_5_17085001	chr3L_17085001	S2R+
562	chr3L	17122853	17122881	chr3L	17122986	17123014		6	134	1.5	2.0	1.8	2.1	161	chr3L	17122853	intron	Rbp6 -	chr3L	17122934	intron	Rbp6 -	chr3L	17123014	intron	Rbp6 -	chr3L_6_17120001	chr3L_17120001	S2R+
563	chr3L	17190975	17190998	chr3L	17191079	17191105		4	105	2.0	1.5	1.8	1.4	130	chr3L	17190975	intron	Rbp6 -	chr3L	17191040	intron	Rbp6 -	chr3L	17191105	intron	Rbp6 -	chr3L_4_17190001	chr3L_17190001	S2R+
564	chr3L	17264989	17265011	chr3L	17265099	17265121		5	110	0.5	1.0	0.8	2.8	132	chr3L	17264989	intergenic	CG13723 +	chr3L	17265055	intergenic	CG13723 +	chr3L	17265121	intergenic	CG13723 +	chr3L_5_17265001	chr3L_17265001	S2R+
565	chr3L	17272220	17272255	chr3L	17272378	17272413		4	158	0.5	2.0	1.2	1.8	193	chr3L	17272220	intergenic	not near genes	chr3L	17272316	intergenic	not near genes	chr3L	17272413	intergenic	not near genes	chr3L_4_17270001	chr3L_17270001	S2R+
566	chr3L	17284234	17284283	chr3L	17284425	17284473		12	190	2.0	2.5	2.2	3.8	239	chr3L	17284234	intergenic	not near genes	chr3L	17284354	intergenic	not near genes	chr3L	17284473	intergenic	not near genes	chr3L_12_17280001	chr3L_17280001	S2R+
567	chr3L	17585331	17585364	chr3L	17585632	17585665		5	301	5.0	5.5	5.2	0.8	334	chr3L	17585331	intron	Eip74EF -	chr3L	17585498	intron	Eip74EF -	chr3L	17585665	intron	Eip74EF -	chr3L_5_17585001	chr3L_17585001	S2R+
568	chr3L	17589756	17589790	chr3L	17589859	17589892		8	102	0.5	2.0	1.2	3.6	136	chr3L	17589756	intron	Eip74EF -	chr3L	17589824	intron	Eip74EF -	chr3L	17589892	intron	Eip74EF -	chr3L_8_17585001	chr3L_17585001	S2R+
569	chr3L	17665623	17665662	chr3L	17665731	17665770		6	108	2.0	1.0	1.5	2.4	147	chr3L	17665623	intron	Crtc -	chr3L	17665696	intron	Crtc -	chr3L	17665770	intron	Crtc -	chr3L_6_17665001	chr3L_17665001	S2R+
570	chr3L	17837602	17837639	chr3L	17837715	17837752		6	113	4.5	2.5	3.5	1.3	150	chr3L	17837602	exon	Grd +	chr3L	17837677	intron	Grd +	chr3L	17837752	exon	Grd +	chr3L_6_17835001	chr3L_17835001	S2R+
571	chr3L	18119617	18119674	chr3L	18119752	18119797		5	131	0.0	3.0	1.5	2.0	180	chr3L	18119617	intron	CG7341 +	chr3L	18119707	intron	CG7341 +	chr3L	18119797	5` UTR	CG7341 +	chr3L_5_18115001	chr3L_18115001	S2R+
572	chr3L	18223142	18223189	chr3L	18223250	18223309		6	112	1.0	0.0	0.5	4.0	167	chr3L	18223142	intergenic	not near genes	chr3L	18223226	intergenic	not near genes	chr3L	18223309	intergenic	not near genes	chr3L_6_18220001	chr3L_18220001	S2R+
573	chr3L	18438268	18438315	chr3L	18438366	18438416		5	99	2.0	1.0	1.5	2.0	148	chr3L	18438268	intergenic	skl -	chr3L	18438342	intergenic	skl -	chr3L	18438416	intergenic	skl -	chr3L_5_18435001	chr3L_18435001	S2R+
574	chr3L	18969577	18969618	chr3L	18969697	18969739		8	119	2.5	3.0	2.8	2.1	162	chr3L	18969577	intergenic	not near genes	chr3L	18969658	intergenic	not near genes	chr3L	18969739	intergenic	not near genes	chr3L_8_18965001	chr3L_18965001	S2R+
575	chr3L	19078338	19078385	chr3L	19079979	19080026		4	1642	6.0	9.5	7.8	0.5	1688	chr3L	19078338	intron	Mkp3 -	chr3L	19079182	intron	Mkp3 -	chr3L	19080026	intron	Mkp3 -	chr3L_4_19075001	chr3L_19075001	S2R+
576	chr3L	19208039	19208074	chr3L	19209438	19209473	Doc	7	1399	2.5	1.5	2.0	2.3	1434	chr3L	19208039	intron	fz2 -	chr3L	19208756	intron	fz2 -	chr3L	19209473	intron	fz2 -	chr3L_7_19205001	chr3L_19205001	S2R+
577	chr3L	19220633	19220637	chr3L	22908066	22908067		25	3687431	6.5	8.0	7.2	3.0	3687434	chr3L	19220633	intron	fz2 -	chr3L	21064350	intron	siz +	chr3L	22908067	intergenic	not near genes	chr3L_25_21060001	chr3L_21060001	S2R+
578	chr3L	19269806	19269844	chr3L	19270035	19270073		8	228	0.0	3.5	1.8	2.9	267	chr3L	19269806	intron,exon	CG14085 +,CG14088 -	chr3L	19269940	intron,exon	CG14085 +,CG14088 -	chr3L	19270073	intron,exon	CG14085 +,CG14088 -	chr3L_8_19265001	chr3L_19265001	S2R+
579	chr3L	19386461	19386509	chr3L	19386590	19386638		5	129	2.5	0.5	1.5	2.0	177	chr3L	19386461	intron	CG32206 -	chr3L	19386550	intron	CG32206 -	chr3L	19386638	intron	CG32206 -	chr3L_5_19385001	chr3L_19385001	S2R+
580	chr3L	19417806	19417833	chr3L	19417910	19417938		5	105	1.0	2.0	1.5	2.0	132	chr3L	19417806	intergenic	not near genes	chr3L	19417872	intergenic	not near genes	chr3L	19417938	intergenic	not near genes	chr3L_5_19415001	chr3L_19415001	S2R+
581	chr3L	19961255	19961303	chr3L	19961491	19961539		7	235	1.5	2.5	2.0	2.3	284	chr3L	19961255	intron	Ac76E +	chr3L	19961397	intron	Ac76E +	chr3L	19961539	intron	Ac76E +	chr3L_7_19960001	chr3L_19960001	S2R+
582	chr3L	20009659	20009677	chr3L	20009903	20009923		4	246	1.5	2.5	2.0	1.3	264	chr3L	20009659	exon	kug +	chr3L	20009791	exon	kug +	chr3L	20009923	exon	kug +	chr3L_4_20005001	chr3L_20005001	S2R+
583	chr3L	20177220	20177272	chr3L	20177332	20177379		10	113	1.0	1.5	1.2	4.5	159	chr3L	20177220	intron	CG42674 -	chr3L	20177300	intron	CG42674 -	chr3L	20177379	intron	CG42674 -	chr3L_10_20175001	chr3L_20175001	S2R+
584	chr3L	20181210	20181216	chr3L	20222997	20223003		4	41788	5.0	8.5	6.8	0.5	41793	chr3L	20181210	intron	CG42674 -	chr3L	20202106	3` UTR	CG7298 -	chr3L	20223003	3` UTR	CG17145 +	chr3L_4_20200001	chr3L_20200001	S2R+
585	chr3L	20290294	20290316	chr3L	20290404	20290425		4	110	1.5	1.0	1.2	1.8	131	chr3L	20290294	intron	gogo -	chr3L	20290360	intron	gogo -	chr3L	20290425	intron	gogo -	chr3L_4_20290001	chr3L_20290001	S2R+
586	chr3L	20422987	20423039	chr3L	20423227	20423278		8	238	3.5	2.0	2.8	2.1	291	chr3L	20422987	exon	zye +	chr3L	20423132	exon	zye +	chr3L	20423278	exon	zye +	chr3L_8_20420001	chr3L_20420001	S2R+
587	chr3L	20476736	20476772	chr3L	20484360	20484396	springer	4	7624	0.5	1.0	0.8	2.2	7660	chr3L	20476736	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484396	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	S2R+
588	chr3L	20525228	20525230	chr3L	24821493	24821493		4	4296265	3.5	2.5	3.0	1.0	4296265	chr3L	20525228	intron	CG4825 -	chr3L	22673360	intron	CG14457 +	chr3L	24821493	intergenic	not near genes	chr3L_4_22670001	chr3L_22670001	S2R+
589	chr3L	20590047	20590096	chr3L	20590611	20590660	412	7	564	1.0	1.0	1.0	3.5	613	chr3L	20590047	intergenic	not near genes	chr3L	20590354	intergenic	not near genes	chr3L	20590660	intergenic	not near genes	chr3L_7_20590001	chr3L_20590001	S2R+
590	chr3L	20821272	20821289	chr3L	20824765	20824782	NOF	4	3494	0.5	1.0	0.8	2.2	3510	chr3L	20821272	intron	Pka-R1 +	chr3L	20823027	intron	Pka-R1 +	chr3L	20824782	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	S2R+
591	chr3L	20826340	20826390	chr3L	20826556	20826606		7	216	1.0	1.5	1.2	3.2	266	chr3L	20826340	intron	Pka-R1 +	chr3L	20826473	intron	Pka-R1 +	chr3L	20826606	intron	Pka-R1 +	chr3L_7_20825001	chr3L_20825001	S2R+
592	chr3L	20913724	20913778	chr3L	20913830	20913881		7	104	1.5	1.5	1.5	2.8	157	chr3L	20913724	intergenic	CR43930 -	chr3L	20913802	intergenic	CR43930 -	chr3L	20913881	intergenic	CR43930 -	chr3L_7_20910001	chr3L_20910001	S2R+
593	chr3L	21014888	21014945	chr3L	21023394	21023451	Tirant	10	8505	1.0	2.5	1.8	3.6	8563	chr3L	21014888	intron	skd -	chr3L	21019170	intron	skd -	chr3L	21023451	intron	skd -	chr3L_10_21015001	chr3L_21015001	S2R+
594	chr3L	21151846	21151871	chr3L	21156955	21156979	flea	5	5109	3.0	2.0	2.5	1.4	5133	chr3L	21151846	intron	Ac78C -	chr3L	21154412	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	S2R+
595	chr3L	21498829	21498868	chr3L	21500487	21500529	1360	7	1659	1.0	3.5	2.2	2.2	1700	chr3L	21498829	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499679	intron	Glg1 -	chr3L	21500529	intron	Glg1 -	chr3L_7_21495001	chr3L_21495001	S2R+
596	chr3L	21501150	21501164	chr3L	21501268	21501283	1360	4	118	1.0	3.0	2.0	1.3	133	chr3L	21501150	intron	Glg1 -	chr3L	21501216	intron	Glg1 -	chr3L	21501283	intron	Glg1 -	chr3L_4_21500001	chr3L_21500001	S2R+
597	chr3L	21710321	21710356	chr3L	21710512	21710547		8	191	6.5	10.0	8.2	0.9	226	chr3L	21710321	intergenic	not near genes	chr3L	21710434	intergenic	not near genes	chr3L	21710547	intergenic	not near genes	chr3L_8_21710001	chr3L_21710001	S2R+
598	chr3L	21789520	21789534	chr3L	21789625	21789642		5	106	2.0	3.5	2.8	1.3	122	chr3L	21789520	intergenic	not near genes	chr3L	21789581	intergenic	not near genes	chr3L	21789642	intergenic	not near genes	chr3L_5_21785001	chr3L_21785001	S2R+
599	chr3L	21972571	21972594	chr3L	21972754	21972776		4	182	1.0	2.5	1.8	1.4	205	chr3L	21972571	intron	CG7470 +	chr3L	21972674	intron	CG7470 +	chr3L	21972776	intron	CG7470 +	chr3L_4_21970001	chr3L_21970001	S2R+
600	chr3L	22018689	22018719	chr3L	22018793	22018822		5	103	2.5	0.5	1.5	2.0	133	chr3L	22018689	intergenic	not near genes	chr3L	22018756	intergenic	not near genes	chr3L	22018822	intergenic	not near genes	chr3L_5_22015001	chr3L_22015001	S2R+
601	chr3L	22099667	22099680	chr3L	22105878	22105888	3S18	4	6210	2.5	2.0	2.2	1.2	6221	chr3L	22099667	intergenic	not near genes	chr3L	22102778	intergenic	not near genes	chr3L	22105888	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	S2R+
602	chr3L	22124787	22124828	chr3L	22124893	22124936		6	107	1.5	1.5	1.5	2.4	149	chr3L	22124787	intergenic	not near genes	chr3L	22124862	intergenic	not near genes	chr3L	22124936	intergenic	not near genes	chr3L_6_22120001	chr3L_22120001	S2R+
603	chr3L	22395582	22395624	chr3L	22395690	22395731		8	106	0.5	1.5	1.0	4.0	149	chr3L	22395582	intron	Ten-m -	chr3L	22395656	intron	Ten-m -	chr3L	22395731	intron	Ten-m -	chr3L_8_22395001	chr3L_22395001	S2R+
604	chr3L	22411355	22411398	chr3L	22411448	22411500		13	97	1.5	2.0	1.8	4.6	145	chr3L	22411355	intergenic	not near genes	chr3L	22411428	intergenic	not near genes	chr3L	22411500	intergenic	not near genes	chr3L_13_22410001	chr3L_22410001	S2R+
605	chr3L	22507116	22507142	chr3L	22507222	22507254		4	109	4.5	3.0	3.8	0.8	138	chr3L	22507116	intergenic	not near genes	chr3L	22507185	intergenic	not near genes	chr3L	22507254	intergenic	not near genes	chr3L_4_22505001	chr3L_22505001	S2R+
606	chr3L	22522690	22522726	chr3L	22522791	22522827		4	102	2.0	2.5	2.2	1.2	137	chr3L	22522690	intergenic	not near genes	chr3L	22522758	intergenic	not near genes	chr3L	22522827	intergenic	not near genes	chr3L_4_22520001	chr3L_22520001	S2R+
607	chr3L	22542887	22542910	chr3L	22543033	22543056		6	146	2.0	0.0	1.0	3.0	169	chr3L	22542887	intergenic	not near genes	chr3L	22542972	intergenic	not near genes	chr3L	22543056	intergenic	not near genes	chr3L_6_22540001	chr3L_22540001	S2R+
608	chr3L	22555755	22555797	chr3L	22563250	22563286	blood	6	7494	1.5	2.5	2.0	2.0	7531	chr3L	22555755	intergenic	not near genes	chr3L	22559520	intergenic	not near genes	chr3L	22563286	intergenic	not near genes	chr3L_6_22555001	chr3L_22555001	S2R+
609	chr3L	22569552	22569595	chr3L	22569675	22569718		7	120	0.5	1.0	0.8	3.9	166	chr3L	22569552	intergenic	not near genes	chr3L	22569635	intergenic	not near genes	chr3L	22569718	intergenic	not near genes	chr3L_7_22565001	chr3L_22565001	S2R+
610	chr3L	22577615	22577644	chr3L	22582428	22582455	Doc	5	4812	3.5	2.5	3.0	1.2	4840	chr3L	22577615	intergenic	not near genes	chr3L	22580035	intergenic	not near genes	chr3L	22582455	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	S2R+
611	chr3L	22617167	22617212	chr3L	22624644	22624689	blood	6	7476	5.5	2.5	4.0	1.2	7522	chr3L	22617167	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624689	intron	CG14459 -	chr3L_6_22620001	chr3L_22620001	S2R+
612	chr3L	22732447	22732474	chr3L	22732553	22732580		4	106	2.5	1.0	1.8	1.4	133	chr3L	22732447	intron	CG11367 +	chr3L	22732514	intron	CG11367 +	chr3L	22732580	exon	CG11367 +	chr3L_4_22730001	chr3L_22730001	S2R+
613	chr3L	22756380	22756429	chr3L	22756481	22756531		4	102	2.0	1.0	1.5	1.6	151	chr3L	22756380	intron	SPoCk +	chr3L	22756456	intron	SPoCk +	chr3L	22756531	intron	SPoCk +	chr3L_4_22755001	chr3L_22755001	S2R+
614	chr3L	22761376	22761407	chr3L	22766835	22766866	Ivk	4	5453	1.0	1.0	1.0	2.0	5490	chr3L	22761376	intron	SPoCk +	chr3L	22764121	intron	SPoCk +	chr3L	22766866	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	S2R+
615	chr3L	22771610	22771666	chr3L	22771715	22771773		14	105	4.0	3.5	3.8	2.9	163	chr3L	22771610	intron	SPoCk +	chr3L	22771692	intron	SPoCk +	chr3L	22771773	intron	SPoCk +	chr3L_14_22770001	chr3L_22770001	S2R+
616	chr3L	22769889	22769930	chr3L	22794516	22794554		8	24625	14.5	9.0	11.8	0.6	24665	chr3L	22769889	intron	SPoCk +	chr3L	22782222	intron	SPoCk +	chr3L	22794554	3` UTR	jim -	chr3L_8_22780001	chr3L_22780001	S2R+
617	chr3L	22853676	22853722	chr3L	22853787	22853833		4	111	1.0	1.5	1.2	1.8	157	chr3L	22853676	5` UTR	CR43426 +	chr3L	22853754	5` UTR	CR43426 +	chr3L	22853833	5` UTR	CR43426 +	chr3L_4_22850001	chr3L_22850001	S2R+
618	chr3L	22897180	22897221	chr3L	22897288	22897329		8	108	1.0	3.0	2.0	2.7	149	chr3L	22897180	intergenic	not near genes	chr3L	22897254	intergenic	not near genes	chr3L	22897329	intergenic	not near genes	chr3L_8_22895001	chr3L_22895001	S2R+
619	chr3L	19220633	19220637	chr3L	22908066	22908067		87	3687431	6.5	8.0	7.2	10.6	3687434	chr3L	19220633	intron	fz2 -	chr3L	21064350	intron	siz +	chr3L	22908067	intergenic	not near genes	chr3L_87_21060001	chr3L_21060001	S2R+
620	chr3L	22908995	22909035	chr3L	22909111	22909149		9	114	2.5	2.5	2.5	2.6	154	chr3L	22908995	intergenic	CR45661 +	chr3L	22909072	intergenic	CR45661 +	chr3L	22909149	intergenic	CR45661 +	chr3L_9_22905001	chr3L_22905001	S2R+
621	chr3L	22966411	22966450	chr3L	22966660	22966699		10	248	2.5	4.5	3.5	2.2	288	chr3L	22966411	intergenic	not near genes	chr3L	22966555	intergenic	not near genes	chr3L	22966699	intergenic	not near genes	chr3L_10_22965001	chr3L_22965001	S2R+
622	chr3L	23815309	23815319	chr3L	23815422	23815426		4	112	1.5	2.0	1.8	1.4	117	chr3L	23815309	intergenic	not near genes	chr3L	23815368	intergenic	not near genes	chr3L	23815426	intergenic	not near genes	chr3L_4_23815001	chr3L_23815001	S2R+
623	chr3L	23875511	23875548	chr3L	23875617	23875654		6	105	1.0	3.5	2.2	1.9	143	chr3L	23875511	intron	CG40470 -	chr3L	23875582	intron	CG40470 -	chr3L	23875654	intron	CG40470 -	chr3L_6_23875001	chr3L_23875001	S2R+
624	chr3L	24168769	24168822	chr3L	24176122	24176175	ZAM	12	7353	4.5	4.0	4.2	2.3	7406	chr3L	24168769	intron	Snap25 +	chr3L	24172472	intron	Snap25 +	chr3L	24176175	intron	Snap25 +	chr3L_12_24170001	chr3L_24170001	S2R+
625	chr3L	24241952	24241980	chr3L	24242062	24242093		6	112	0.5	3.0	1.8	2.1	141	chr3L	24241952	intron	Snap25 +	chr3L	24242022	intron	Snap25 +	chr3L	24242093	intron	Snap25 +	chr3L_6_24240001	chr3L_24240001	S2R+
626	chr3L	20525228	20525230	chr3L	24821492	24821494		5	4296263	3.5	2.5	3.0	1.2	4296266	chr3L	20525228	intron	CG4825 -	chr3L	22673361	intron	CG14457 +	chr3L	24821494	intergenic	not near genes	chr3L_5_22670001	chr3L_22670001	S2R+
627	chr3L	26717642	26717693	chr3L	26717743	26717790		8	100	1.5	0.0	0.8	4.4	148	chr3L	26717642	intergenic	not near genes	chr3L	26717716	intergenic	not near genes	chr3L	26717790	intergenic	not near genes	chr3L_8_26715001	chr3L_26715001	S2R+
628	chr3L	27269410	27269466	chr3L	27269518	27269574		4	108	0.5	0.5	0.5	2.7	164	chr3L	27269410	intergenic	not near genes	chr3L	27269492	intergenic	not near genes	chr3L	27269574	intergenic	not near genes	chr3L_4_27265001	chr3L_27265001	S2R+
629	chr3L	27390436	27390710	chr3L	27390682	27390814		7	140	16.5	12.5	14.5	0.5	378	chr3L	27390436	intron	Dbp80 +	chr3L	27390625	intron	Dbp80 +	chr3L	27390814	intron	Dbp80 +	chr3L_7_27390001	chr3L_27390001	S2R+
630	chr3R	2490872	2490920	chr3R	2491001	2491049		9	128	0.5	1.5	1.0	4.5	177	chr3R	2490872	intergenic	not near genes	chr3R	2490960	intergenic	not near genes	chr3R	2491049	intergenic	not near genes	chr3R_9_2490001	chr3R_2490001	S2R+
631	chr3R	2534112	2534159	chr3R	2541705	2541753		8	7593	8.5	4.5	6.5	1.1	7641	chr3R	2534112	intergenic	not near genes	chr3R	2537932	intergenic	not near genes	chr3R	2541753	intergenic	not near genes	chr3R_8_2535001	chr3R_2535001	S2R+
632	chr3R	4105018	4105057	chr3R	4110247	4110285	copia	5	5229	2.5	2.5	2.5	1.4	5267	chr3R	4105018	intergenic	not near genes	chr3R	4107652	intergenic	not near genes	chr3R	4110285	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	S2R+
633	chr3R	4236923	4236957	chr3R	4237022	4237058		7	99	6.0	0.0	3.0	1.8	135	chr3R	4236923	intron	Gel +	chr3R	4236990	intron	Gel +	chr3R	4237058	intron	Gel +	chr3R_7_4235001	chr3R_4235001	S2R+
634	chr3R	4625659	4625710	chr3R	4625768	4625820		6	110	1.5	0.5	1.0	3.0	161	chr3R	4625659	intron	5-HT2A +	chr3R	4625740	intron	5-HT2A +	chr3R	4625820	intron	5-HT2A +	chr3R_6_4625001	chr3R_4625001	S2R+
635	chr3R	4680700	4680723	chr3R	4680804	4680827		4	104	0.0	2.5	1.2	1.8	127	chr3R	4680700	intron	CG43427 +	chr3R	4680764	intron	CG43427 +	chr3R	4680827	5` UTR	CG43427 +	chr3R_4_4680001	chr3R_4680001	S2R+
636	chr3R	4697049	4697086	chr3R	4697161	4697198		7	111	0.5	3.0	1.8	2.5	149	chr3R	4697049	intron	CG43427 +	chr3R	4697124	intron	CG43427 +	chr3R	4697198	5` UTR	CG43427 +	chr3R_7_4695001	chr3R_4695001	S2R+
637	chr3R	4753233	4753255	chr3R	4757559	4757582	F-element	4	4327	2.5	3.0	2.8	1.1	4349	chr3R	4753233	intron,intron	atms +,CG44098 -	chr3R	4755408	intron,intron	atms +,CG44098 -	chr3R	4757582	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	S2R+
638	chr3R	4796101	4796129	chr3R	4796249	4796277		4	147	2.0	1.0	1.5	1.6	176	chr3R	4796101	intron	ctrip -	chr3R	4796189	intron	ctrip -	chr3R	4796277	intron	ctrip -	chr3R_4_4795001	chr3R_4795001	S2R+
639	chr3R	4861545	4861593	chr3R	4861649	4861699		8	104	1.5	1.0	1.2	3.6	154	chr3R	4861545	intron	opa +	chr3R	4861622	intron	opa +	chr3R	4861699	intron	opa +	chr3R_8_4860001	chr3R_4860001	S2R+
640	chr3R	4969790	4969824	chr3R	4969897	4969931		5	108	0.0	1.0	0.5	3.3	141	chr3R	4969790	intergenic	not near genes	chr3R	4969860	intergenic	not near genes	chr3R	4969931	intergenic	not near genes	chr3R_5_4965001	chr3R_4965001	S2R+
641	chr3R	5045823	5045867	chr3R	5052950	5052994	HMS-Beagle	4	7127	1.0	0.5	0.8	2.2	7171	chr3R	5045823	3` UTR	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052994	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	S2R+
642	chr3R	5067961	5068005	chr3R	5073499	5073547	mdg3	4	5541	0.0	0.5	0.2	3.3	5586	chr3R	5067961	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073547	intergenic	not near genes	chr3R_4_5070001	chr3R_5070001	S2R+
643	chr3R	5158131	5158174	chr3R	5158246	5158292		6	117	2.0	2.5	2.2	1.9	161	chr3R	5158131	intron	dpr16 +	chr3R	5158212	intron	dpr16 +	chr3R	5158292	intron	dpr16 +	chr3R_6_5155001	chr3R_5155001	S2R+
644	chr3R	5191366	5191420	chr3R	5191618	5191671		7	251	7.0	10.5	8.8	0.7	305	chr3R	5191366	intron	cno -	chr3R	5191518	intron	cno -	chr3R	5191671	intron	cno -	chr3R_7_5190001	chr3R_5190001	S2R+
645	chr3R	5385953	5386006	chr3R	5386148	5386197		10	193	3.0	0.5	1.8	3.6	244	chr3R	5385953	intron	kkv -	chr3R	5386075	intron	kkv -	chr3R	5386197	intron	kkv -	chr3R_10_5385001	chr3R_5385001	S2R+
646	chr3R	5418085	5418129	chr3R	5418383	5418426		6	297	1.5	0.5	1.0	3.0	341	chr3R	5418085	intron	CG14669 +	chr3R	5418256	intron	CG14669 +	chr3R	5418426	intron	CG14669 +	chr3R_6_5415001	chr3R_5415001	S2R+
647	chr3R	5497048	5497095	chr3R	5497892	5497939		8	844	14.5	13.5	14.0	0.5	891	chr3R	5497048	intron	CG31547 -	chr3R	5497494	intron	CG31547 -	chr3R	5497939	intron	CG31547 -	chr3R_8_5495001	chr3R_5495001	S2R+
648	chr3R	5515138	5515165	chr3R	5515240	5515265		7	101	0.0	1.0	0.5	4.7	127	chr3R	5515138	intron	Nmdar1 -	chr3R	5515202	intron	Nmdar1 -	chr3R	5515265	intron	Nmdar1 -	chr3R_7_5515001	chr3R_5515001	S2R+
649	chr3R	5746005	5746038	chr3R	5746271	5746304	pogo	4	266	1.5	2.5	2.0	1.3	299	chr3R	5746005	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746304	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	S2R+
650	chr3R	5927557	5927584	chr3R	5927812	5927849	pogo	6	263	2.5	1.5	2.0	2.0	292	chr3R	5927557	intron	CG34113 -	chr3R	5927703	intron	CG34113 -	chr3R	5927849	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	S2R+
651	chr3R	5947949	5947986	chr3R	5948067	5948105		7	117	3.0	1.0	2.0	2.3	156	chr3R	5947949	intron	CG34113 -	chr3R	5948027	intron	CG34113 -	chr3R	5948105	intron	CG34113 -	chr3R_7_5945001	chr3R_5945001	S2R+
652	chr3R	5956542	5956586	chr3R	5956643	5956689		5	103	0.0	1.5	0.8	2.8	147	chr3R	5956542	intron	CG34113 -	chr3R	5956616	intron	CG34113 -	chr3R	5956689	intron	CG34113 -	chr3R_5_5955001	chr3R_5955001	S2R+
653	chr3R	5989346	5989363	chr3R	5989454	5989471		5	107	2.0	1.5	1.8	1.8	125	chr3R	5989346	5` UTR	CR44927 +	chr3R	5989408	5` UTR	CR44927 +	chr3R	5989471	5` UTR	CR44927 +	chr3R_5_5985001	chr3R_5985001	S2R+
654	chr3R	6015947	6015990	chr3R	6024452	6024487	Tirant	6	8503	0.5	4.0	2.2	1.9	8540	chr3R	6015947	intergenic	not near genes	chr3R	6020217	intergenic	not near genes	chr3R	6024487	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	S2R+
655	chr3R	6158492	6158529	chr3R	6167099	6167137	Tirant	4	8606	3.0	1.5	2.2	1.2	8645	chr3R	6158492	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167137	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	S2R+
656	chr3R	6191147	6191196	chr3R	6191248	6191301		7	104	0.5	0.0	0.2	5.8	154	chr3R	6191147	intron	NPFR +	chr3R	6191224	intron	NPFR +	chr3R	6191301	intron	NPFR +	chr3R_7_6190001	chr3R_6190001	S2R+
657	chr3R	6206270	6206281	chr3R	6206511	6206522	BS	5	241	2.5	3.0	2.8	1.3	252	chr3R	6206270	exon	Osi24 +	chr3R	6206396	intron	Osi24 +	chr3R	6206522	intron	Osi24 +	chr3R_5_6205001	chr3R_6205001	S2R+
658	chr3R	6499602	6499658	chr3R	6499705	6499762		12	104	3.0	5.5	4.2	2.3	160	chr3R	6499602	intergenic	not near genes	chr3R	6499682	intergenic	not near genes	chr3R	6499762	intergenic	not near genes	chr3R_12_6495001	chr3R_6495001	S2R+
659	chr3R	6702012	6702053	chr3R	6705885	6705920		4	3868	15.5	6.0	10.8	0.3	3908	chr3R	6702012	3` UTR	Ccp84Ab -	chr3R	6703966	intergenic	Ccp84Aa +	chr3R	6705920	intergenic	not near genes	chr3R_4_6700001	chr3R_6700001	S2R+
660	chr3R	6737493	6737507	chr3R	6739305	6739316	Doc	4	1811	4.5	3.0	3.8	0.8	1823	chr3R	6737493	intron	pb -	chr3R	6738404	intron	pb -	chr3R	6739316	intron	pb -	chr3R_4_6735001	chr3R_6735001	S2R+
661	chr3R	6891216	6891269	chr3R	6891314	6891370		6	94	1.5	0.5	1.0	3.0	154	chr3R	6891216	intergenic	not near genes	chr3R	6891293	intergenic	not near genes	chr3R	6891370	intergenic	not near genes	chr3R_6_6890001	chr3R_6890001	S2R+
662	chr3R	7012755	7012786	chr3R	7012856	7012898		5	109	0.5	1.0	0.8	2.8	143	chr3R	7012755	intergenic	not near genes	chr3R	7012826	intergenic	not near genes	chr3R	7012898	intergenic	not near genes	chr3R_5_7010001	chr3R_7010001	S2R+
663	chr3R	7106757	7106779	chr3R	7107075	7107094		4	317	0.5	2.0	1.2	1.8	337	chr3R	7106757	intron	Alh -	chr3R	7106926	intron	Alh -	chr3R	7107094	intron	Alh -	chr3R_4_7105001	chr3R_7105001	S2R+
664	chr3R	7217444	7217471	chr3R	7217685	7217717		4	244	0.0	1.0	0.5	2.7	273	chr3R	7217444	intergenic	CG14605 -,CG14606 -	chr3R	7217580	intergenic	CG14605 -,CG14606 -	chr3R	7217717	3` UTR	CG14605 -	chr3R_4_7215001	chr3R_7215001	S2R+
665	chr3R	7425566	7425604	chr3R	7425685	7425726		5	121	1.5	0.5	1.0	2.5	160	chr3R	7425566	intergenic	not near genes	chr3R	7425646	intergenic	not near genes	chr3R	7425726	intergenic	not near genes	chr3R_5_7425001	chr3R_7425001	S2R+
666	chr3R	7479988	7480039	chr3R	7480092	7480143		5	104	2.0	1.0	1.5	2.0	155	chr3R	7479988	intergenic	not near genes	chr3R	7480066	intergenic	not near genes	chr3R	7480143	intergenic	not near genes	chr3R_5_7480001	chr3R_7480001	S2R+
667	chr3R	7545674	7545727	chr3R	7545922	7545948		4	240	0.0	0.5	0.2	3.3	274	chr3R	7545674	intergenic	alpha-Est1 -,alpha-Est2 +	chr3R	7545811	3` UTR	alpha-Est1 -	chr3R	7545948	3` UTR	alpha-Est1 -	chr3R_4_7545001	chr3R_7545001	S2R+
668	chr3R	7577459	7577479	chr3R	7577566	7577586		5	107	1.0	0.5	0.8	2.8	127	chr3R	7577459	intron	CG34127 -	chr3R	7577522	intron	CG34127 -	chr3R	7577586	intron	CG34127 -	chr3R_5_7575001	chr3R_7575001	S2R+
669	chr3R	7617972	7617990	chr3R	7618087	7618107		4	116	1.0	3.5	2.2	1.2	135	chr3R	7617972	intron	CG34127 -	chr3R	7618040	intron	CG34127 -	chr3R	7618107	intron	CG34127 -	chr3R_4_7615001	chr3R_7615001	S2R+
670	chr3R	7658446	7658486	chr3R	7658558	7658598		5	112	2.5	2.0	2.2	1.6	152	chr3R	7658446	intron	Nlg1 +	chr3R	7658522	intron	Nlg1 +	chr3R	7658598	intron	Nlg1 +	chr3R_5_7655001	chr3R_7655001	S2R+
671	chr3R	7729450	7729463	chr3R	7737412	7737426	Stalker2	4	7963	1.0	1.5	1.2	1.8	7976	chr3R	7729450	intergenic	not near genes	chr3R	7733438	intergenic	not near genes	chr3R	7737426	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	S2R+
672	chr3R	8101740	8101790	chr3R	8104848	8104899	G2	6	3108	0.5	1.0	0.8	3.3	3159	chr3R	8101740	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104899	3` UTR	CG7900 +	chr3R_6_8100001	chr3R_8100001	S2R+
673	chr3R	8154258	8154289	chr3R	8154368	8154399		4	110	3.5	2.0	2.8	1.1	141	chr3R	8154258	intron	grn -	chr3R	8154328	intron	grn -	chr3R	8154399	intron	grn -	chr3R_4_8150001	chr3R_8150001	S2R+
674	chr3R	8207563	8207571	chr3R	8208423	8208439	F-element	4	862	0.0	1.5	0.8	2.2	876	chr3R	8207563	intergenic	not near genes	chr3R	8208001	intergenic	not near genes	chr3R	8208439	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	S2R+
675	chr3R	8339246	8339247	chr3R	21907534	21907536		15	13568289	3.5	5.5	4.5	2.7	13568290	chr3R	8339246	intergenic	not near genes	chr3R	15123391	intron	CG42788 -	chr3R	21907536	intergenic	CG6678 +	chr3R_15_15120001	chr3R_15120001	S2R+
676	chr3R	8402996	8403030	chr3R	8412184	8412219	roo	5	9189	4.0	3.5	3.8	1.0	9223	chr3R	8402996	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412219	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	S2R+
677	chr3R	8469548	8469569	chr3R	8469650	8469664		7	102	4.5	2.0	3.2	1.7	116	chr3R	8469548	intron	CG45263 -	chr3R	8469606	intron	CG45263 -	chr3R	8469664	intron	CG45263 -	chr3R_7_8465001	chr3R_8465001	S2R+
678	chr3R	8570464	8570504	chr3R	8575124	8575162	HMS-Beagle	4	4660	1.0	1.0	1.0	2.0	4698	chr3R	8570464	intergenic	not near genes	chr3R	8572813	intergenic	not near genes	chr3R	8575162	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	S2R+
679	chr3R	8630879	8630933	chr3R	8631007	8631064		8	131	0.5	1.5	1.0	4.0	185	chr3R	8630879	intergenic	not near genes	chr3R	8630972	intergenic	not near genes	chr3R	8631064	intergenic	not near genes	chr3R_8_8630001	chr3R_8630001	S2R+
680	chr3R	8636921	8636960	chr3R	8637249	8637288		8	327	4.0	3.0	3.5	1.8	367	chr3R	8636921	intergenic	not near genes	chr3R	8637104	intergenic	not near genes	chr3R	8637288	intergenic	not near genes	chr3R_8_8635001	chr3R_8635001	S2R+
681	chr3R	8639677	8639716	chr3R	8639784	8639823		4	107	0.5	2.5	1.5	1.6	146	chr3R	8639677	intergenic	not near genes	chr3R	8639750	intergenic	not near genes	chr3R	8639823	intergenic	not near genes	chr3R_4_8635001	chr3R_8635001	S2R+
682	chr3R	8707337	8707376	chr3R	8709802	8709842	jockey	8	2466	3.5	0.0	1.8	2.9	2505	chr3R	8707337	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709842	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	S2R+
683	chr3R	8966643	8966680	chr3R	8966809	8966846		6	165	3.0	1.0	2.0	2.0	203	chr3R	8966643	intergenic	not near genes	chr3R	8966744	intergenic	not near genes	chr3R	8966846	intergenic	not near genes	chr3R_6_8965001	chr3R_8965001	S2R+
684	chr3R	9078772	9078811	chr3R	9078880	9078919		7	107	1.5	1.5	1.5	2.8	147	chr3R	9078772	intron	pum -	chr3R	9078846	intron	pum -	chr3R	9078919	intron	pum -	chr3R_7_9075001	chr3R_9075001	S2R+
685	chr3R	9278768	9278799	chr3R	9284052	9284084	Rt1a	5	5284	3.5	3.5	3.5	1.1	5316	chr3R	9278768	intergenic	not near genes	chr3R	9281426	intergenic	not near genes	chr3R	9284084	intergenic	not near genes	chr3R_5_9280001	chr3R_9280001	S2R+
686	chr3R	9382797	9382847	chr3R	9382947	9382962		7	145	1.5	0.5	1.0	3.5	165	chr3R	9382797	intron	FER -	chr3R	9382880	intron	FER -	chr3R	9382962	intron	FER -	chr3R_7_9380001	chr3R_9380001	S2R+
687	chr3R	9601444	9601492	chr3R	9601587	9601633		5	142	1.5	0.5	1.0	2.5	189	chr3R	9601444	intron	CG8312 +	chr3R	9601538	intron	CG8312 +	chr3R	9601633	intron	CG8312 +	chr3R_5_9600001	chr3R_9600001	S2R+
688	chr3R	9620956	9620956	chr3R	21907535	21907536		6	12286580	3.5	5.5	4.5	1.1	12286580	chr3R	9620956	intron	CG8312 +	chr3R	15764246	intergenic	not near genes	chr3R	21907536	intergenic	CG6678 +	chr3R_6_15760001	chr3R_15760001	S2R+
689	chr3R	9684084	9684144	chr3R	9684198	9684258		26	113	3.5	1.5	2.5	7.4	174	chr3R	9684084	5` UTR	CG9444 -	chr3R	9684171	5` UTR	CG9444 -	chr3R	9684258	5` UTR	CG9444 -	chr3R_26_9680001	chr3R_9680001	S2R+
690	chr3R	9836846	9836864	chr3R	9836959	9836977		6	113	2.0	1.5	1.8	2.1	131	chr3R	9836846	intron	Teh1 -	chr3R	9836912	intron	Teh1 -	chr3R	9836977	intron	Teh1 -	chr3R_6_9835001	chr3R_9835001	S2R+
691	chr3R	9926218	9926258	chr3R	9926320	9926367		8	107	2.0	3.0	2.5	2.3	149	chr3R	9926218	intron	Glut4EF +	chr3R	9926292	intron	Glut4EF +	chr3R	9926367	intron	Glut4EF +	chr3R_8_9925001	chr3R_9925001	S2R+
692	chr3R	10094322	10094371	chr3R	10094433	10094480		15	109	3.0	5.0	4.0	3.0	158	chr3R	10094322	5` UTR	CR43459 +	chr3R	10094401	5` UTR	CR43459 +	chr3R	10094480	5` UTR	CR43459 +	chr3R_15_10090001	chr3R_10090001	S2R+
693	chr3R	10059541	10059561	chr3R	10129726	10129746		4	70186	8.5	15.0	11.8	0.3	70205	chr3R	10059541	intergenic	not near genes	chr3R	10094644	5` UTR	CR43459 +	chr3R	10129746	intron	tws -	chr3R_4_10090001	chr3R_10090001	S2R+
694	chr3R	10275560	10275577	chr3R	10275662	10275669		4	99	1.0	3.0	2.0	1.3	109	chr3R	10275560	intron	CG43143 +	chr3R	10275614	intron	CG43143 +	chr3R	10275669	intron	CG43143 +	chr3R_4_10275001	chr3R_10275001	S2R+
695	chr3R	10351396	10351434	chr3R	10351497	10351538		5	103	0.5	2.5	1.5	2.0	142	chr3R	10351396	intron	jumu +	chr3R	10351467	intron	jumu +	chr3R	10351538	intron	jumu +	chr3R_5_10350001	chr3R_10350001	S2R+
696	chr3R	10563111	10563159	chr3R	10563216	10563264		4	104	1.0	1.5	1.2	1.8	153	chr3R	10563111	intron	hth -	chr3R	10563188	intron	hth -	chr3R	10563264	intron	hth -	chr3R_4_10560001	chr3R_10560001	S2R+
697	chr3R	10596620	10596644	chr3R	10596711	10596745		5	92	1.5	0.5	1.0	2.5	125	chr3R	10596620	intron	hth -	chr3R	10596682	intron	hth -	chr3R	10596745	intron	hth -	chr3R_5_10595001	chr3R_10595001	S2R+
698	chr3R	10724929	10724968	chr3R	10725032	10725071		5	101	3.0	1.0	2.0	1.7	142	chr3R	10724929	intergenic	not near genes	chr3R	10725000	intergenic	not near genes	chr3R	10725071	intergenic	not near genes	chr3R_5_10725001	chr3R_10725001	S2R+
699	chr3R	10727621	10727655	chr3R	10727726	10727760		4	104	2.0	1.5	1.8	1.4	139	chr3R	10727621	intergenic	not near genes	chr3R	10727690	intergenic	not near genes	chr3R	10727760	intergenic	not near genes	chr3R_4_10725001	chr3R_10725001	S2R+
700	chr3R	10804168	10804197	chr3R	10811725	10811754	17.6	6	7557	3.0	1.0	2.0	2.0	7586	chr3R	10804168	intergenic	CG14692 -	chr3R	10807961	intergenic	not near genes	chr3R	10811754	3` UTR	CG14693 -	chr3R_6_10805001	chr3R_10805001	S2R+
701	chr3R	10920033	10920076	chr3R	10920133	10920179		6	101	2.0	3.0	2.5	1.7	146	chr3R	10920033	intergenic	not near genes	chr3R	10920106	intergenic	not near genes	chr3R	10920179	intergenic	not near genes	chr3R_6_10920001	chr3R_10920001	S2R+
702	chr3R	10927348	10927378	chr3R	10927615	10927636		6	264	0.0	2.0	1.0	3.0	288	chr3R	10927348	intergenic	not near genes	chr3R	10927492	intergenic	not near genes	chr3R	10927636	intergenic	not near genes	chr3R_6_10925001	chr3R_10925001	S2R+
703	chr3R	10957844	10957880	chr3R	10963254	10963290	Rt1c	6	5408	4.0	3.0	3.5	1.3	5446	chr3R	10957844	intergenic	not near genes	chr3R	10960567	intergenic	not near genes	chr3R	10963290	intergenic	not near genes	chr3R_6_10960001	chr3R_10960001	S2R+
704	chr3R	10971460	10971512	chr3R	10971576	10971601		4	109	0.5	1.0	0.8	2.2	141	chr3R	10971460	intergenic	not near genes	chr3R	10971530	intergenic	not near genes	chr3R	10971601	intergenic	not near genes	chr3R_4_10970001	chr3R_10970001	S2R+
705	chr3R	10987250	10987308	chr3R	10988142	10988200		8	891	2.0	0.0	1.0	4.0	950	chr3R	10987250	intron	CG34114 +	chr3R	10987725	intron	CG34114 +	chr3R	10988200	intron	CG34114 +	chr3R_8_10985001	chr3R_10985001	S2R+
706	chr3R	11050626	11050666	chr3R	11050731	11050771		4	105	6.5	5.5	6.0	0.6	145	chr3R	11050626	intergenic	CG34114 +	chr3R	11050698	intergenic	not near genes	chr3R	11050771	intergenic	not near genes	chr3R_4_11050001	chr3R_11050001	S2R+
707	chr3R	11102307	11102334	chr3R	11102411	11102440		6	106	0.5	2.0	1.2	2.7	133	chr3R	11102307	intergenic	not near genes	chr3R	11102374	intergenic	not near genes	chr3R	11102440	intergenic	not near genes	chr3R_6_11100001	chr3R_11100001	S2R+
708	chr3R	11104250	11104276	chr3R	11104354	11104380		5	104	1.5	0.0	0.8	2.8	130	chr3R	11104250	intergenic	not near genes	chr3R	11104315	intergenic	not near genes	chr3R	11104380	intergenic	not near genes	chr3R_5_11100001	chr3R_11100001	S2R+
709	chr3R	11111529	11111572	chr3R	11111875	11111918		5	346	0.5	1.0	0.8	2.8	389	chr3R	11111529	intergenic	not near genes	chr3R	11111724	intergenic	not near genes	chr3R	11111918	intergenic	not near genes	chr3R_5_11110001	chr3R_11110001	S2R+
710	chr3R	11197963	11197999	chr3R	11198087	11198123		4	124	0.0	1.0	0.5	2.7	160	chr3R	11197963	intron	cu +	chr3R	11198043	intron	cu +	chr3R	11198123	intron	cu +	chr3R_4_11195001	chr3R_11195001	S2R+
711	chr3R	11265906	11265922	chr3R	11266015	11266031		8	107	3.5	4.0	3.8	1.7	125	chr3R	11265906	intergenic	not near genes	chr3R	11265968	intergenic	not near genes	chr3R	11266031	intergenic	not near genes	chr3R_8_11265001	chr3R_11265001	S2R+
712	chr3R	11297439	11297471	chr3R	11307518	11307550		5	10079	8.0	8.0	8.0	0.6	10111	chr3R	11297439	intron	CR31386 -	chr3R	11302494	intron	CR31386 -	chr3R	11307550	intergenic	not near genes	chr3R_5_11300001	chr3R_11300001	S2R+
713	chr3R	11379216	11379239	chr3R	11388396	11388419	roo	4	9180	3.0	3.0	3.0	1.0	9203	chr3R	11379216	intron	pros +	chr3R	11383818	intron	pros +	chr3R	11388419	intron	pros +	chr3R_4_11380001	chr3R_11380001	S2R+
714	chr3R	11476928	11476965	chr3R	11477055	11477092		6	127	0.0	0.0	0.0	6.0	164	chr3R	11476928	intergenic	not near genes	chr3R	11477010	intergenic	not near genes	chr3R	11477092	intergenic	not near genes	chr3R_6_11475001	chr3R_11475001	S2R+
715	chr3R	11664774	11664816	chr3R	11664891	11664930		8	116	1.5	2.5	2.0	2.7	156	chr3R	11664774	intron	CG42327 +	chr3R	11664852	intron	CG42327 +	chr3R	11664930	intron	CG42327 +	chr3R_8_11660001	chr3R_11660001	S2R+
716	chr3R	11841050	11841092	chr3R	11846253	11846307	BS	4	5212	2.0	1.5	1.8	1.4	5257	chr3R	11841050	intron	CG6959 -	chr3R	11843678	intron	CG6959 -	chr3R	11846307	intron	CG6959 -	chr3R_4_11840001	chr3R_11840001	S2R+
717	chr3R	12022870	12022900	chr3R	12025072	12025101	pogo	5	2202	1.0	2.5	1.8	1.8	2231	chr3R	12022870	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025101	intergenic	not near genes	chr3R_5_12020001	chr3R_12020001	S2R+
718	chr3R	12080849	12080897	chr3R	12080951	12081000		6	103	0.5	2.0	1.2	2.7	151	chr3R	12080849	intron	CG14741 -	chr3R	12080924	intron	CG14741 -	chr3R	12081000	intron	CG14741 -	chr3R_6_12080001	chr3R_12080001	S2R+
719	chr3R	12102876	12102883	chr3R	12102976	12102985		4	101	6.0	8.5	7.2	0.5	109	chr3R	12102876	intron	dpr17 +	chr3R	12102930	intron	dpr17 +	chr3R	12102985	intron	dpr17 +	chr3R_4_12100001	chr3R_12100001	S2R+
720	chr3R	12202260	12202312	chr3R	12202394	12202444		8	133	1.5	2.0	1.8	2.9	184	chr3R	12202260	intergenic	not near genes	chr3R	12202352	intergenic	not near genes	chr3R	12202444	intergenic	not near genes	chr3R_8_12200001	chr3R_12200001	S2R+
721	chr3R	12297633	12297640	chr3R	12297735	12297742		4	102	5.5	7.5	6.5	0.5	109	chr3R	12297633	intron	svp +	chr3R	12297688	intron	svp +	chr3R	12297742	intron	svp +	chr3R_4_12295001	chr3R_12295001	S2R+
722	chr3R	12312636	12312669	chr3R	12312745	12312776		4	108	2.0	0.0	1.0	2.0	140	chr3R	12312636	exon	CG4066 +	chr3R	12312706	exon	CG4066 +	chr3R	12312776	exon	CG4066 +	chr3R_4_12310001	chr3R_12310001	S2R+
723	chr3R	12344111	12344154	chr3R	12344213	12344256		5	102	1.0	0.5	0.8	2.8	145	chr3R	12344111	intergenic	not near genes	chr3R	12344184	intergenic	not near genes	chr3R	12344256	intergenic	not near genes	chr3R_5_12340001	chr3R_12340001	S2R+
724	chr3R	12392883	12392899	chr3R	12392998	12393024		5	121	1.5	5.0	3.2	1.2	141	chr3R	12392883	intron,5` UTR,3` UTR	CG34402 +,CG10096 -,CG10097 -	chr3R	12392954	intron,5` UTR,3` UTR	CG34402 +,CG10096 -,CG10097 -	chr3R	12393024	intron,5` UTR,3` UTR	CG34402 +,CG10096 -,CG10097 -	chr3R_5_12390001	chr3R_12390001	S2R+
725	chr3R	12429943	12429965	chr3R	12430101	12430124		6	159	3.5	5.5	4.5	1.1	181	chr3R	12429943	exon	CG5245 +	chr3R	12430034	exon	CG5245 +	chr3R	12430124	exon	CG5245 +	chr3R_6_12430001	chr3R_12430001	S2R+
726	chr3R	12569930	12569959	chr3R	12570036	12570065		4	106	3.5	1.0	2.2	1.2	135	chr3R	12569930	intron	Octbeta2R -	chr3R	12569998	intron	Octbeta2R -	chr3R	12570065	intron	Octbeta2R -	chr3R_4_12565001	chr3R_12565001	S2R+
727	chr3R	12599369	12599405	chr3R	12599471	12599513		6	106	0.5	3.0	1.8	2.1	144	chr3R	12599369	intergenic	not near genes	chr3R	12599441	intergenic	not near genes	chr3R	12599513	intergenic	not near genes	chr3R_6_12595001	chr3R_12595001	S2R+
728	chr3R	12733453	12733504	chr3R	12733555	12733606		10	101	1.0	3.5	2.2	3.1	153	chr3R	12733453	intergenic	not near genes	chr3R	12733530	intergenic	not near genes	chr3R	12733606	intergenic	not near genes	chr3R_10_12730001	chr3R_12730001	S2R+
729	chr3R	12733831	12733874	chr3R	12733936	12733979		6	104	1.5	3.0	2.2	1.9	148	chr3R	12733831	intergenic	not near genes	chr3R	12733905	intergenic	not near genes	chr3R	12733979	intergenic	not near genes	chr3R_6_12730001	chr3R_12730001	S2R+
730	chr3R	12786455	12786487	chr3R	12786838	12786870		5	383	2.5	1.0	1.8	1.8	415	chr3R	12786455	intergenic	not near genes	chr3R	12786662	intergenic	not near genes	chr3R	12786870	intergenic	not near genes	chr3R_5_12785001	chr3R_12785001	S2R+
731	chr3R	12799018	12799057	chr3R	12799223	12799262		5	204	0.5	2.0	1.2	2.3	244	chr3R	12799018	intergenic	not near genes	chr3R	12799140	intergenic	not near genes	chr3R	12799262	intergenic	not near genes	chr3R_5_12795001	chr3R_12795001	S2R+
732	chr3R	12825809	12825853	chr3R	12825914	12825957		11	104	3.0	5.5	4.2	2.1	148	chr3R	12825809	intergenic	not near genes	chr3R	12825883	intergenic	not near genes	chr3R	12825957	intergenic	not near genes	chr3R_11_12825001	chr3R_12825001	S2R+
733	chr3R	12920145	12920177	chr3R	12925372	12925403	copia	5	5227	2.0	4.5	3.2	1.2	5258	chr3R	12920145	intron	beat-Vb +	chr3R	12922774	intron	beat-Vb +	chr3R	12925403	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	S2R+
734	chr3R	13135802	13135853	chr3R	13138002	13138053	pogo	5	2200	3.0	1.5	2.2	1.6	2251	chr3R	13135802	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138053	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13135001	chr3R_13135001	S2R+
735	chr3R	13143021	13143063	chr3R	13148622	13148664	mdg3	7	5601	4.0	3.0	3.5	1.6	5643	chr3R	13143021	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148664	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	S2R+
736	chr3R	13205401	13205438	chr3R	13205507	13205544		6	105	0.5	1.0	0.8	3.3	143	chr3R	13205401	intergenic	not near genes	chr3R	13205472	intergenic	not near genes	chr3R	13205544	intergenic	not near genes	chr3R_6_13205001	chr3R_13205001	S2R+
737	chr3R	13372311	13372354	chr3R	13372488	13372539		5	183	0.5	2.0	1.2	2.3	228	chr3R	13372311	intergenic	CG34309 +,Lip3 -	chr3R	13372425	intergenic	CG34309 +	chr3R	13372539	intergenic	CG34309 +	chr3R_5_13370001	chr3R_13370001	S2R+
738	chr3R	13534359	13534408	chr3R	13534474	13534523		4	114	2.0	2.0	2.0	1.3	164	chr3R	13534359	intergenic	not near genes	chr3R	13534441	intergenic	not near genes	chr3R	13534523	intergenic	not near genes	chr3R_4_13530001	chr3R_13530001	S2R+
739	chr3R	13571507	13571551	chr3R	13571609	13571652		4	100	1.0	0.5	0.8	2.2	145	chr3R	13571507	intergenic	not near genes	chr3R	13571580	intergenic	not near genes	chr3R	13571652	intergenic	not near genes	chr3R_4_13570001	chr3R_13570001	S2R+
740	chr3R	13794960	13794967	chr3R	13795084	13795091		4	123	1.5	0.5	1.0	2.0	131	chr3R	13794960	intergenic	not near genes	chr3R	13795026	intergenic	not near genes	chr3R	13795091	intergenic	not near genes	chr3R_4_13795001	chr3R_13795001	S2R+
741	chr3R	13835574	13835615	chr3R	13835691	13835732		4	117	0.5	3.0	1.8	1.4	158	chr3R	13835574	intron	Nsf2 -	chr3R	13835653	intron	Nsf2 -	chr3R	13835732	intron	Nsf2 -	chr3R_4_13835001	chr3R_13835001	S2R+
742	chr3R	15162550	15162561	chr3R	15167341	15167353	F-element	4	4791	1.5	2.5	2.0	1.3	4803	chr3R	15162550	intron	Gyc88E +	chr3R	15164952	intron	Gyc88E +	chr3R	15167353	intron	Gyc88E +	chr3R_4_15160001	chr3R_15160001	S2R+
743	chr3R	15585309	15585332	chr3R	15585432	15585445		6	122	0.5	0.0	0.2	5.0	136	chr3R	15585309	intergenic	not near genes	chr3R	15585377	intergenic	not near genes	chr3R	15585445	intergenic	not near genes	chr3R_6_15585001	chr3R_15585001	S2R+
744	chr3R	15601148	15601190	chr3R	15608695	15608736	412	9	7547	1.0	2.0	1.5	3.6	7588	chr3R	15601148	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608736	intergenic	not near genes	chr3R_9_15600001	chr3R_15600001	S2R+
745	chr3R	15912515	15912558	chr3R	15912653	15912693		8	137	2.0	5.5	3.8	1.7	178	chr3R	15912515	intron	CG45105 -	chr3R	15912604	intron	CG45105 -	chr3R	15912693	3` UTR	CG45105 -	chr3R_8_15910001	chr3R_15910001	S2R+
746	chr3R	16374281	16374301	chr3R	16374423	16374443		5	142	1.0	2.0	1.5	2.0	162	chr3R	16374281	intergenic	ss -	chr3R	16374362	intergenic	ss -	chr3R	16374443	3` UTR	ss -	chr3R_5_16370001	chr3R_16370001	S2R+
747	chr3R	16521206	16521224	chr3R	16521315	16521334		4	108	1.0	2.5	1.8	1.4	128	chr3R	16521206	intron	CG42342 +	chr3R	16521270	intron	CG42342 +	chr3R	16521334	intron	CG42342 +	chr3R_4_16520001	chr3R_16520001	S2R+
748	chr3R	16621502	16621541	chr3R	16621602	16621642		7	101	3.5	3.0	3.2	1.7	140	chr3R	16621502	exon	CG14893 +	chr3R	16621572	exon	CG14893 +	chr3R	16621642	exon	CG14893 +	chr3R_7_16620001	chr3R_16620001	S2R+
749	chr3R	16705825	16705859	chr3R	16706167	16706203		5	343	1.5	0.5	1.0	2.5	378	chr3R	16705825	intron	Ubx -	chr3R	16706014	intron	Ubx -	chr3R	16706203	intron	Ubx -	chr3R_5_16705001	chr3R_16705001	S2R+
750	chr3R	16910474	16910493	chr3R	16910648	16910667		5	178	1.5	3.5	2.5	1.4	193	chr3R	16910474	intron	iab-8 -	chr3R	16910570	intron	iab-8 -	chr3R	16910667	intron	iab-8 -	chr3R_5_16910001	chr3R_16910001	S2R+
751	chr3R	17294659	17294690	chr3R	17295112	17295143	BS	4	453	2.5	1.0	1.8	1.4	484	chr3R	17294659	intergenic	not near genes	chr3R	17294901	intergenic	not near genes	chr3R	17295143	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	S2R+
752	chr3R	17312802	17312850	chr3R	17312912	17312960		6	110	1.5	0.5	1.0	3.0	158	chr3R	17312802	intergenic	not near genes	chr3R	17312881	intergenic	not near genes	chr3R	17312960	intergenic	not near genes	chr3R_6_17310001	chr3R_17310001	S2R+
753	chr3R	17355478	17355519	chr3R	17355577	17355621		6	101	2.0	1.5	1.8	2.1	143	chr3R	17355478	intron	beat-IIa -	chr3R	17355550	intron	beat-IIa -	chr3R	17355621	intron	beat-IIa -	chr3R_6_17355001	chr3R_17355001	S2R+
754	chr3R	17497941	17497993	chr3R	17498052	17498102		12	110	0.5	0.5	0.5	8.0	161	chr3R	17497941	intron	Dscam3 -	chr3R	17498022	intron	Dscam3 -	chr3R	17498102	intron	Dscam3 -	chr3R_12_17495001	chr3R_17495001	S2R+
755	chr3R	17509231	17509253	chr3R	17516811	17516825	412	5	7578	1.0	2.5	1.8	1.8	7594	chr3R	17509231	intergenic	not near genes	chr3R	17513028	intergenic	not near genes	chr3R	17516825	intergenic	not near genes	chr3R_5_17510001	chr3R_17510001	S2R+
756	chr3R	17554338	17554376	chr3R	17554636	17554678		4	300	2.5	2.5	2.5	1.1	340	chr3R	17554338	intergenic	not near genes	chr3R	17554508	intergenic	not near genes	chr3R	17554678	intergenic	not near genes	chr3R_4_17550001	chr3R_17550001	S2R+
757	chr3R	17702152	17702199	chr3R	17702250	17702303		9	103	1.5	3.0	2.2	2.8	151	chr3R	17702152	intron	osa -	chr3R	17702228	intron	osa -	chr3R	17702303	intron	osa -	chr3R_9_17700001	chr3R_17700001	S2R+
758	chr3R	17925849	17925875	chr3R	17927341	17927365	hobo	6	1490	1.0	2.0	1.5	2.4	1516	chr3R	17925849	intron	cpo +	chr3R	17926607	intron	cpo +	chr3R	17927365	intron	cpo +	chr3R_6_17925001	chr3R_17925001	S2R+
759	chr3R	18067960	18068019	chr3R	18068081	18068126		4	114	0.0	1.0	0.5	2.7	166	chr3R	18067960	intergenic	not near genes	chr3R	18068043	intergenic	not near genes	chr3R	18068126	intergenic	not near genes	chr3R_4_18065001	chr3R_18065001	S2R+
760	chr3R	18302967	18302972	chr3R	18303096	18303099		4	127	3.0	0.0	1.5	1.6	132	chr3R	18302967	intergenic	CG7126 -,PKD -	chr3R	18303033	intergenic	CG7126 -,PKD -	chr3R	18303099	intergenic	PKD -,CG7126 -	chr3R_4_18300001	chr3R_18300001	S2R+
761	chr3R	18341581	18341609	chr3R	18341696	18341724		4	115	3.5	0.0	1.8	1.4	143	chr3R	18341581	intron	CG15803 -	chr3R	18341652	intron	CG15803 -	chr3R	18341724	intron	CG15803 -	chr3R_4_18340001	chr3R_18340001	S2R+
762	chr3R	18617698	18617730	chr3R	18617803	18617835		4	105	1.0	0.5	0.8	2.2	137	chr3R	18617698	intron,intron	qin +,CG14304 -	chr3R	18617766	intron,intron	qin +,CG14304 -	chr3R	18617835	intron,intron	qin +,CG14304 -	chr3R_4_18615001	chr3R_18615001	S2R+
763	chr3R	18839793	18839833	chr3R	18839902	18839941		6	109	0.5	4.5	2.5	1.7	148	chr3R	18839793	intron	CG18208 -	chr3R	18839867	intron	CG18208 -	chr3R	18839941	intron	CG18208 -	chr3R_6_18835001	chr3R_18835001	S2R+
764	chr3R	18942571	18942627	chr3R	18942678	18942736		5	109	0.0	1.0	0.5	3.3	165	chr3R	18942571	intron	CG42613 +	chr3R	18942654	intron	CG42613 +	chr3R	18942736	intron	CG42613 +	chr3R_5_18940001	chr3R_18940001	S2R+
765	chr3R	19280538	19280577	chr3R	19280638	19280675		4	99	0.0	0.0	0.0	4.0	137	chr3R	19280538	intergenic	not near genes	chr3R	19280606	intergenic	not near genes	chr3R	19280675	intergenic	not near genes	chr3R_4_19280001	chr3R_19280001	S2R+
766	chr3R	19490426	19490458	chr3R	19490540	19490572		7	114	4.0	0.5	2.2	2.2	146	chr3R	19490426	intron,exon	Dys +,CG15025 -	chr3R	19490499	intron,intron	Dys +,CG15025 -	chr3R	19490572	intron,intron	Dys +,CG15025 -	chr3R_7_19490001	chr3R_19490001	S2R+
767	chr3R	19590626	19590646	chr3R	19590743	19590749		7	114	3.0	6.5	4.8	1.2	123	chr3R	19590626	exon	Dys +	chr3R	19590688	intron	Dys +	chr3R	19590749	intron	Dys +	chr3R_7_19590001	chr3R_19590001	S2R+
768	chr3R	19580853	19580889	chr3R	19634186	19634222		4	53333	13.5	6.5	10.0	0.4	53369	chr3R	19580853	intron	Dys +	chr3R	19607538	intron	CG17751 +	chr3R	19634222	exon	subdued -	chr3R_4_19605001	chr3R_19605001	S2R+
769	chr3R	19678465	19678505	chr3R	19678582	19678622		4	117	1.5	1.5	1.5	1.6	157	chr3R	19678465	intron	Naam +	chr3R	19678544	intron	Naam +	chr3R	19678622	intron	Naam +	chr3R_4_19675001	chr3R_19675001	S2R+
770	chr3R	19987175	19987219	chr3R	19987281	19987325		7	106	1.5	2.0	1.8	2.5	150	chr3R	19987175	intron	Hs6st -	chr3R	19987250	intron	Hs6st -	chr3R	19987325	intron	Hs6st -	chr3R_7_19985001	chr3R_19985001	S2R+
771	chr3R	20078819	20078868	chr3R	20079005	20079054		5	186	2.0	1.5	1.8	1.8	235	chr3R	20078819	intergenic	not near genes	chr3R	20078936	intergenic	not near genes	chr3R	20079054	intergenic	not near genes	chr3R_5_20075001	chr3R_20075001	S2R+
772	chr3R	20282251	20282288	chr3R	20282352	20282389		5	100	0.0	1.0	0.5	3.3	138	chr3R	20282251	intron	cic +	chr3R	20282320	intron	cic +	chr3R	20282389	intron	cic +	chr3R_5_20280001	chr3R_20280001	S2R+
773	chr3R	20286128	20286151	chr3R	20286258	20286283		9	131	3.0	0.0	1.5	3.6	155	chr3R	20286128	intron	cic +	chr3R	20286206	intron	cic +	chr3R	20286283	intron	cic +	chr3R_9_20285001	chr3R_20285001	S2R+
774	chr3R	20349449	20349493	chr3R	20350311	20350355		6	861	2.0	1.5	1.8	2.1	906	chr3R	20349449	intergenic	not near genes	chr3R	20349902	intergenic	not near genes	chr3R	20350355	intergenic	not near genes	chr3R_6_20345001	chr3R_20345001	S2R+
775	chr3R	20442838	20442871	chr3R	20443001	20443036		7	164	1.5	3.0	2.2	2.2	198	chr3R	20442838	intron	Gfrl -	chr3R	20442937	intron	Gfrl -	chr3R	20443036	intron	Gfrl -	chr3R_7_20440001	chr3R_20440001	S2R+
776	chr3R	20453622	20453655	chr3R	20453751	20453781		9	127	4.0	1.0	2.5	2.6	159	chr3R	20453622	intron	Gfrl -	chr3R	20453702	intron	Gfrl -	chr3R	20453781	intron	Gfrl -	chr3R_9_20450001	chr3R_20450001	S2R+
777	chr3R	20506599	20506609	chr3R	20507422	20507437	BS	4	826	0.0	2.5	1.2	1.8	838	chr3R	20506599	intergenic	Or92a +	chr3R	20507018	intergenic	CG4288 -	chr3R	20507437	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	S2R+
778	chr3R	20730914	20730922	chr3R	20731039	20731047		4	125	0.5	0.0	0.2	3.3	133	chr3R	20730914	intergenic	not near genes	chr3R	20730980	intergenic	not near genes	chr3R	20731047	intergenic	not near genes	chr3R_4_20730001	chr3R_20730001	S2R+
779	chr3R	20787413	20787456	chr3R	20787529	20787572		5	116	1.5	1.0	1.2	2.3	159	chr3R	20787413	intron	Syp +	chr3R	20787492	intron	Syp +	chr3R	20787572	intron	Syp +	chr3R_5_20785001	chr3R_20785001	S2R+
780	chr3R	21108013	21108054	chr3R	21108299	21108340		7	286	0.5	0.0	0.2	5.8	327	chr3R	21108013	intergenic	Sec15 -,rtet +	chr3R	21108176	intergenic	Sec15 -,rtet +	chr3R	21108340	intergenic	rtet +,Sec15 -	chr3R_7_21105001	chr3R_21105001	S2R+
781	chr3R	21141675	21141707	chr3R	21150162	21150212	Tirant	4	8501	1.5	3.0	2.2	1.2	8537	chr3R	21141675	intron	SNF4Agamma +	chr3R	21145944	intron	SNF4Agamma +	chr3R	21150212	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	S2R+
782	chr3R	21189673	21189719	chr3R	21189775	21189822		4	103	0.5	0.5	0.5	2.7	149	chr3R	21189673	intron	SNF4Agamma +	chr3R	21189748	intron	SNF4Agamma +	chr3R	21189822	intron	SNF4Agamma +	chr3R_4_21185001	chr3R_21185001	S2R+
783	chr3R	21240433	21240461	chr3R	21240542	21240578		4	114	1.5	0.5	1.0	2.0	145	chr3R	21240433	intergenic	not near genes	chr3R	21240506	intergenic	not near genes	chr3R	21240578	intergenic	not near genes	chr3R_4_21240001	chr3R_21240001	S2R+
784	chr3R	21472009	21472022	chr3R	21472095	21472125		5	101	1.5	0.5	1.0	2.5	116	chr3R	21472009	intergenic	not near genes	chr3R	21472067	intergenic	not near genes	chr3R	21472125	intergenic	not near genes	chr3R_5_21470001	chr3R_21470001	S2R+
785	chr3R	21519000	21519028	chr3R	21519110	21519127		5	108	2.5	2.0	2.2	1.6	127	chr3R	21519000	intergenic	not near genes	chr3R	21519064	intergenic	not near genes	chr3R	21519127	intergenic	not near genes	chr3R_5_21515001	chr3R_21515001	S2R+
786	chr3R	21628131	21628148	chr3R	21628249	21628266		6	118	1.5	0.5	1.0	3.0	135	chr3R	21628131	intron	E2f -	chr3R	21628198	intron	E2f -	chr3R	21628266	intron	E2f -	chr3R_6_21625001	chr3R_21625001	S2R+
787	chr3R	21903509	21903628	chr3R	21903613	21903750		4	118	0.0	0.0	0.0	4.0	241	chr3R	21903509	intron	CG6678 +	chr3R	21903630	intron	CG6678 +	chr3R	21903750	intron	CG6678 +	chr3R_4_21900001	chr3R_21900001	S2R+
788	chr3R	8339246	8339247	chr3R	21907534	21907534		7	13568287	3.5	5.5	4.5	1.3	13568288	chr3R	8339246	intergenic	not near genes	chr3R	15123390	intron	CG42788 -	chr3R	21907534	intergenic	CG6678 +	chr3R_7_15120001	chr3R_15120001	S2R+
789	chr3R	21907534	21907534	chr3R	28831801	28831802		28	6924268	5.0	3.5	4.2	5.4	6924268	chr3R	21907534	intergenic	CG6678 +	chr3R	25369668	intron	Fur1 -	chr3R	28831802	intron	WASp -	chr3R_28_25365001	chr3R_25365001	S2R+
790	chr3R	21907535	21907535	chr3R	28831801	28831802		13	6924266	5.0	3.5	4.2	2.5	6924267	chr3R	21907535	intergenic	CG6678 +	chr3R	25369668	intron	Fur1 -	chr3R	28831802	intron	WASp -	chr3R_13_25365001	chr3R_25365001	S2R+
791	chr3R	21907536	21907536	chr3R	28831801	28831802		24	6924266	5.0	3.5	4.2	4.6	6924266	chr3R	21907536	intergenic	CG6678 +	chr3R	25369669	intron	Fur1 -	chr3R	28831802	intron	WASp -	chr3R_24_25365001	chr3R_25365001	S2R+
792	chr3R	22234658	22234714	chr3R	22236002	22236058	pogo	4	1342	2.0	1.0	1.5	1.6	1400	chr3R	22234658	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236058	intron	SKIP +	chr3R_4_22235001	chr3R_22235001	S2R+
793	chr3R	22433080	22433090	chr3R	22433200	22433215		4	124	2.5	3.0	2.8	1.1	135	chr3R	22433080	intron	CG13847 -	chr3R	22433148	intron	CG13847 -	chr3R	22433215	intron	CG13847 -	chr3R_4_22430001	chr3R_22430001	S2R+
794	chr3R	22437766	22437798	chr3R	22437881	22437913		6	115	1.5	2.0	1.8	2.1	147	chr3R	22437766	intergenic	not near genes	chr3R	22437840	intergenic	not near genes	chr3R	22437913	intergenic	not near genes	chr3R_6_22435001	chr3R_22435001	S2R+
795	chr3R	22450520	22450575	chr3R	22453185	22453240	NOF	15	2665	4.0	2.0	3.0	3.8	2720	chr3R	22450520	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453240	intron	CG34376 +	chr3R_15_22450001	chr3R_22450001	S2R+
796	chr3R	22538421	22538461	chr3R	22538531	22538570		6	109	4.0	3.5	3.8	1.2	149	chr3R	22538421	intron	CG5326 -	chr3R	22538496	intron	CG5326 -	chr3R	22538570	intron	CG5326 -	chr3R_6_22535001	chr3R_22535001	S2R+
797	chr3R	22597355	22597372	chr3R	22597457	22597472		8	101	4.0	3.5	3.8	1.7	117	chr3R	22597355	intron	Efa6 +	chr3R	22597414	intron	Efa6 +	chr3R	22597472	intron	Efa6 +	chr3R_8_22595001	chr3R_22595001	S2R+
798	chr3R	22684186	22684235	chr3R	22684287	22684336		8	100	1.5	5.0	3.2	1.9	150	chr3R	22684186	intergenic	not near genes	chr3R	22684261	intergenic	not near genes	chr3R	22684336	intergenic	not near genes	chr3R_8_22680001	chr3R_22680001	S2R+
799	chr3R	22080701	22080738	chr3R	22717264	22717301		5	636563	6.5	16.0	11.2	0.4	636600	chr3R	22080701	exon	CG13408 +	chr3R	22399001	intergenic	not near genes	chr3R	22717301	exon	wge -	chr3R_5_22395001	chr3R_22395001	S2R+
800	chr3R	22769079	22769123	chr3R	22769181	22769221		4	101	1.0	2.0	1.5	1.6	142	chr3R	22769079	intron,intron,exon	CG7029 +,Usp12-46 +,CG43092 -	chr3R	22769150	intron,intron,exon	CG7029 +,Usp12-46 +,CG43092 -	chr3R	22769221	intron,intron,exon	CG7029 +,Usp12-46 +,CG43092 -	chr3R_4_22765001	chr3R_22765001	S2R+
801	chr3R	22794497	22794527	chr3R	22794598	22794627		4	101	2.5	0.5	1.5	1.6	130	chr3R	22794497	intergenic	CG7029 +	chr3R	22794562	intergenic	not near genes	chr3R	22794627	intergenic	not near genes	chr3R_4_22790001	chr3R_22790001	S2R+
802	chr3R	22860137	22860170	chr3R	22860254	22860287		4	116	1.0	2.0	1.5	1.6	150	chr3R	22860137	intergenic	not near genes	chr3R	22860212	intergenic	not near genes	chr3R	22860287	intergenic	not near genes	chr3R_4_22860001	chr3R_22860001	S2R+
803	chr3R	22871419	22871449	chr3R	22871577	22871607		4	158	1.5	1.0	1.2	1.8	188	chr3R	22871419	intergenic	not near genes	chr3R	22871513	intergenic	not near genes	chr3R	22871607	intergenic	not near genes	chr3R_4_22870001	chr3R_22870001	S2R+
804	chr3R	22927679	22927725	chr3R	22927788	22927834		7	109	1.0	2.5	1.8	2.5	155	chr3R	22927679	intron	klg +	chr3R	22927756	intron	klg +	chr3R	22927834	intron	klg +	chr3R_7_22925001	chr3R_22925001	S2R+
805	chr3R	22974259	22974311	chr3R	22974368	22974420		8	109	0.0	0.5	0.2	6.7	161	chr3R	22974259	intergenic	not near genes	chr3R	22974340	intergenic	not near genes	chr3R	22974420	intergenic	not near genes	chr3R_8_22970001	chr3R_22970001	S2R+
806	chr3R	23005717	23005752	chr3R	23005823	23005856		5	106	2.5	4.5	3.5	1.1	139	chr3R	23005717	intron	CG34375 -	chr3R	23005786	intron	CG34375 -	chr3R	23005856	intron	CG34375 -	chr3R_5_23005001	chr3R_23005001	S2R+
807	chr3R	23245970	23246020	chr3R	23246077	23246127		8	105	0.5	2.5	1.5	3.2	157	chr3R	23245970	intron	CG4467 -	chr3R	23246048	intron	CG4467 -	chr3R	23246127	intron	CG4467 -	chr3R_8_23245001	chr3R_23245001	S2R+
808	chr3R	23324006	23324051	chr3R	23324117	23324162		15	111	3.0	1.0	2.0	5.0	156	chr3R	23324006	intron	pnt -	chr3R	23324084	intron	pnt -	chr3R	23324162	intron	pnt -	chr3R_15_23320001	chr3R_23320001	S2R+
809	chr3R	23345907	23345957	chr3R	23633355	23633405		6	287448	15.0	7.5	11.2	0.5	287498	chr3R	23345907	5` UTR	pnt -	chr3R	23489656	intergenic	Ir94h +	chr3R	23633405	intron	CG31145 -	chr3R_6_23485001	chr3R_23485001	S2R+
810	chr3R	23363667	23363724	chr3R	23363985	23364042		19	316	1.5	3.5	2.5	5.4	375	chr3R	23363667	intergenic	CG4408 -	chr3R	23363854	intergenic	CG4408 -	chr3R	23364042	intergenic	CG4408 -	chr3R_19_23360001	chr3R_23360001	S2R+
811	chr3R	23497936	23497973	chr3R	23498029	23498080		7	105	2.5	4.5	3.5	1.6	144	chr3R	23497936	intergenic	not near genes	chr3R	23498008	intergenic	not near genes	chr3R	23498080	intergenic	not near genes	chr3R_7_23495001	chr3R_23495001	S2R+
812	chr3R	23558379	23558421	chr3R	23560185	23560227	Bari1	9	1806	1.0	3.5	2.2	2.8	1848	chr3R	23558379	intron	beat-IV +	chr3R	23559303	intron	beat-IV +	chr3R	23560227	intron	beat-IV +	chr3R_9_23555001	chr3R_23555001	S2R+
813	chr3R	23572746	23572780	chr3R	23572877	23572925		17	143	4.0	5.5	4.8	2.9	179	chr3R	23572746	intron	beat-IV +	chr3R	23572836	intron	beat-IV +	chr3R	23572925	intron	beat-IV +	chr3R_17_23570001	chr3R_23570001	S2R+
814	chr3R	23650226	23650257	chr3R	23650375	23650406		8	147	0.0	0.0	0.0	8.0	180	chr3R	23650226	intron	CG31145 -	chr3R	23650316	intron	CG31145 -	chr3R	23650406	intron	CG31145 -	chr3R_8_23650001	chr3R_23650001	S2R+
815	chr3R	23314730	23314746	chr3R	23654007	23654023		11	339277	12.5	3.0	7.8	1.2	339293	chr3R	23314730	intron	pnt -	chr3R	23484376	exon	Ir94g +	chr3R	23654023	intron	CG31145 -	chr3R_11_23480001	chr3R_23480001	S2R+
816	chr3R	23684674	23684716	chr3R	23685184	23685227	roo	9	510	4.5	4.0	4.2	1.7	553	chr3R	23684674	exon	CG18754 +	chr3R	23684950	intron	CG18754 +	chr3R	23685227	exon	CG18754 +	chr3R_9_23680001	chr3R_23680001	S2R+
817	chr3R	23820617	23820656	chr3R	23820726	23820765		5	109	0.0	2.0	1.0	2.5	148	chr3R	23820617	5` UTR	CG34355 +	chr3R	23820691	5` UTR	CG34355 +	chr3R	23820765	5` UTR	CG34355 +	chr3R_5_23820001	chr3R_23820001	S2R+
818	chr3R	23865006	23865048	chr3R	23865120	23865162		6	114	0.5	0.5	0.5	4.0	156	chr3R	23865006	intron	Pli -	chr3R	23865084	intron	Pli -	chr3R	23865162	intron	Pli -	chr3R_6_23865001	chr3R_23865001	S2R+
819	chr3R	24021602	24021646	chr3R	24021717	24021761		5	114	0.0	1.0	0.5	3.3	159	chr3R	24021602	intron	KrT95D -	chr3R	24021682	intron	KrT95D -	chr3R	24021761	intron	KrT95D -	chr3R_5_24020001	chr3R_24020001	S2R+
820	chr3R	24042087	24042125	chr3R	24042269	24042315		7	188	1.5	2.5	2.0	2.3	228	chr3R	24042087	3` UTR	spas +	chr3R	24042201	3` UTR	spas +	chr3R	24042315	3` UTR	spas +	chr3R_7_24040001	chr3R_24040001	S2R+
821	chr3R	24076894	24076946	chr3R	24078386	24078438	hobo	11	1492	1.0	1.0	1.0	5.5	1544	chr3R	24076894	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078438	intron	4EHP -	chr3R_11_24075001	chr3R_24075001	S2R+
822	chr3R	24119859	24119890	chr3R	24120058	24120089		6	199	2.5	2.0	2.2	1.9	230	chr3R	24119859	intron	Rootletin +	chr3R	24119974	intron	Rootletin +	chr3R	24120089	intron	Rootletin +	chr3R_6_24115001	chr3R_24115001	S2R+
823	chr3R	24173931	24173980	chr3R	24175562	24175608		13	1627	1.5	3.5	2.5	3.7	1677	chr3R	24173931	intron	CG13606 +	chr3R	24174770	intron	CG13606 +	chr3R	24175608	intron	CG13606 +	chr3R_13_24170001	chr3R_24170001	S2R+
824	chr3R	24199714	24199767	chr3R	24199819	24199868		4	104	1.0	0.0	0.5	2.7	154	chr3R	24199714	intron	twin -	chr3R	24199791	intron	twin -	chr3R	24199868	intron	twin -	chr3R_4_24195001	chr3R_24195001	S2R+
825	chr3R	24385852	24385898	chr3R	24385970	24386016		5	118	1.0	4.5	2.8	1.3	164	chr3R	24385852	intergenic	CG5768 -	chr3R	24385934	intergenic	CG5768 -	chr3R	24386016	intergenic	CG5768 -	chr3R_5_24385001	chr3R_24385001	S2R+
826	chr3R	24912475	24912507	chr3R	24912580	24912613		5	106	2.5	0.5	1.5	2.0	138	chr3R	24912475	intergenic	not near genes	chr3R	24912544	intergenic	CR44267 +	chr3R	24912613	intergenic	CR44267 +	chr3R_5_24910001	chr3R_24910001	S2R+
827	chr3R	24927116	24927153	chr3R	24931932	24931969	Doc	5	4816	1.5	2.0	1.8	1.8	4853	chr3R	24927116	intergenic	Trf4-2 +	chr3R	24929542	intergenic	not near genes	chr3R	24931969	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	S2R+
828	chr3R	25027529	25027552	chr3R	25027766	25027790		5	238	3.0	2.0	2.5	1.4	261	chr3R	25027529	intron	Hr96 +	chr3R	25027660	intron	Hr96 +	chr3R	25027790	intron	Hr96 +	chr3R_5_25025001	chr3R_25025001	S2R+
829	chr3R	25053405	25053450	chr3R	25053507	25053549		7	102	1.5	1.5	1.5	2.8	144	chr3R	25053405	3` UTR	CG31109 -	chr3R	25053477	3` UTR	CG31109 -	chr3R	25053549	3` UTR	CG31109 -	chr3R_7_25050001	chr3R_25050001	S2R+
830	chr3R	25559484	25559510	chr3R	25559604	25559627		4	119	1.0	2.0	1.5	1.6	143	chr3R	25559484	intron	msi +	chr3R	25559556	intron	msi +	chr3R	25559627	intron	msi +	chr3R_4_25555001	chr3R_25555001	S2R+
831	chr3R	25576818	25576851	chr3R	25576939	25576974		7	123	1.0	1.5	1.2	3.2	156	chr3R	25576818	intron	msi +	chr3R	25576896	intron	msi +	chr3R	25576974	intron	msi +	chr3R_7_25575001	chr3R_25575001	S2R+
832	chr3R	25689106	25689147	chr3R	25689237	25689280		6	132	1.5	1.0	1.2	2.7	174	chr3R	25689106	intergenic	not near genes	chr3R	25689193	intergenic	not near genes	chr3R	25689280	intergenic	not near genes	chr3R_6_25685001	chr3R_25685001	S2R+
833	chr3R	25843623	25843663	chr3R	25843778	25843818		4	155	0.0	1.5	0.8	2.2	195	chr3R	25843623	intergenic	CR45653 +	chr3R	25843720	intergenic	CR45653 +	chr3R	25843818	intergenic	CR45653 +	chr3R_4_25840001	chr3R_25840001	S2R+
834	chr3R	25869197	25869238	chr3R	25869416	25869457		7	219	1.5	3.0	2.2	2.2	260	chr3R	25869197	intron	CG5890 +	chr3R	25869327	intron	CG5890 +	chr3R	25869457	intron	CG5890 +	chr3R_7_25865001	chr3R_25865001	S2R+
835	chr3R	25900882	25900932	chr3R	25903574	25903626		10	2692	17.5	10.5	14.0	0.7	2744	chr3R	25900882	exon	CG31091 +	chr3R	25902254	intergenic	CG31091 +,CG31089 +	chr3R	25903626	exon,intron	CG31089 +,CR43259 -	chr3R_10_25900001	chr3R_25900001	S2R+
836	chr3R	26063175	26063211	chr3R	26063294	26063330		8	118	2.5	0.0	1.2	3.6	155	chr3R	26063175	intergenic	CG14551 -	chr3R	26063252	intergenic	CG14551 -	chr3R	26063330	intergenic	CG14551 -	chr3R_8_26060001	chr3R_26060001	S2R+
837	chr3R	26122436	26122468	chr3R	26122537	26122569		4	101	4.0	0.0	2.0	1.3	133	chr3R	26122436	intron	CG31324 +	chr3R	26122502	intron	CG31324 +	chr3R	26122569	intron	CG31324 +	chr3R_4_26120001	chr3R_26120001	S2R+
838	chr3R	26140491	26140529	chr3R	26140629	26140667		4	138	2.0	0.5	1.2	1.8	176	chr3R	26140491	intergenic	not near genes	chr3R	26140579	intergenic	not near genes	chr3R	26140667	intergenic	not near genes	chr3R_4_26140001	chr3R_26140001	S2R+
839	chr3R	26144437	26144473	chr3R	26144540	26144576		4	102	1.0	0.5	0.8	2.2	139	chr3R	26144437	intergenic	not near genes	chr3R	26144506	intergenic	not near genes	chr3R	26144576	intergenic	not near genes	chr3R_4_26140001	chr3R_26140001	S2R+
840	chr3R	26159687	26159738	chr3R	26159802	26159852		11	114	0.5	0.5	0.5	7.3	165	chr3R	26159687	intergenic	not near genes	chr3R	26159770	intergenic	not near genes	chr3R	26159852	intergenic	not near genes	chr3R_11_26155001	chr3R_26155001	S2R+
841	chr3R	26294701	26294749	chr3R	26294804	26294852		4	103	1.5	1.0	1.2	1.8	151	chr3R	26294701	intergenic	not near genes	chr3R	26294776	intergenic	not near genes	chr3R	26294852	intergenic	not near genes	chr3R_4_26290001	chr3R_26290001	S2R+
842	chr3R	26317774	26317785	chr3R	26318008	26318019		5	234	4.5	2.5	3.5	1.1	245	chr3R	26317774	intergenic	not near genes	chr3R	26317896	intergenic	CG33970 +	chr3R	26318019	intergenic	CG33970 +	chr3R_5_26315001	chr3R_26315001	S2R+
843	chr3R	26325663	26325708	chr3R	26325776	26325821		9	113	4.5	1.5	3.0	2.2	158	chr3R	26325663	intron	CG33970 +	chr3R	26325742	intron	CG33970 +	chr3R	26325821	intron	CG33970 +	chr3R_9_26325001	chr3R_26325001	S2R+
844	chr3R	26456619	26456665	chr3R	26456722	26456767		9	103	0.5	0.5	0.5	6.0	148	chr3R	26456619	intergenic	CG14237 +,Pdf -	chr3R	26456693	intergenic	CG14237 +	chr3R	26456767	intergenic	CG14237 +	chr3R_9_26455001	chr3R_26455001	S2R+
845	chr3R	26510498	26510517	chr3R	26519578	26519597	roo	4	9080	0.5	2.0	1.2	1.8	9099	chr3R	26510498	intron	plum -	chr3R	26515048	intron	plum -	chr3R	26519597	intron,5` UTR	plum -,CR45226 +	chr3R_4_26515001	chr3R_26515001	S2R+
846	chr3R	26558300	26558327	chr3R	26565638	26565665	Stalker4	6	7338	3.0	2.5	2.8	1.6	7365	chr3R	26558300	intron	scrib +	chr3R	26561982	intron	scrib +	chr3R	26565665	intron	scrib +	chr3R_6_26560001	chr3R_26560001	S2R+
847	chr3R	26607715	26607752	chr3R	26607816	26607853		6	100	6.0	1.5	3.8	1.2	138	chr3R	26607715	5` UTR	CR44951 +	chr3R	26607784	5` UTR	CR44951 +	chr3R	26607853	5` UTR	CR44951 +	chr3R_6_26605001	chr3R_26605001	S2R+
848	chr3R	26641615	26641641	chr3R	26641727	26641752		10	111	4.5	2.0	3.2	2.4	137	chr3R	26641615	intergenic	not near genes	chr3R	26641684	intergenic	not near genes	chr3R	26641752	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	S2R+
849	chr3R	26685849	26685870	chr3R	26686046	26686047		6	198	3.0	2.5	2.8	1.6	198	chr3R	26685849	intergenic	not near genes	chr3R	26685948	intergenic	not near genes	chr3R	26686047	intergenic	not near genes	chr3R_6_26685001	chr3R_26685001	S2R+
850	chr3R	26705368	26705403	chr3R	26705513	26705548		4	145	0.5	0.5	0.5	2.7	180	chr3R	26705368	intron	amon -	chr3R	26705458	intron	amon -	chr3R	26705548	intron	amon -	chr3R_4_26705001	chr3R_26705001	S2R+
851	chr3R	26740264	26740309	chr3R	26740365	26740410		5	100	2.0	2.5	2.2	1.6	146	chr3R	26740264	intergenic	not near genes	chr3R	26740337	intergenic	not near genes	chr3R	26740410	intergenic	not near genes	chr3R_5_26740001	chr3R_26740001	S2R+
852	chr3R	26753341	26753378	chr3R	26753454	26753491		6	113	1.0	1.5	1.2	2.7	150	chr3R	26753341	intergenic	not near genes	chr3R	26753416	intergenic	not near genes	chr3R	26753491	intergenic	not near genes	chr3R_6_26750001	chr3R_26750001	S2R+
853	chr3R	26767341	26767388	chr3R	26767444	26767491		14	102	3.0	3.5	3.2	3.3	150	chr3R	26767341	intergenic	not near genes	chr3R	26767416	intergenic	not near genes	chr3R	26767491	intergenic	not near genes	chr3R_14_26765001	chr3R_26765001	S2R+
854	chr3R	26806116	26806164	chr3R	26806245	26806291		5	129	2.5	0.5	1.5	2.0	175	chr3R	26806116	intron	Tl +	chr3R	26806204	intron	Tl +	chr3R	26806291	intron	Tl +	chr3R_5_26805001	chr3R_26805001	S2R+
855	chr3R	26816722	26816760	chr3R	26816840	26816878		4	118	1.0	3.0	2.0	1.3	156	chr3R	26816722	intron	Tl +	chr3R	26816800	intron	Tl +	chr3R	26816878	intron	Tl +	chr3R_4_26815001	chr3R_26815001	S2R+
856	chr3R	26862694	26862740	chr3R	26903308	26903354		11	40614	9.0	12.0	10.5	1.0	40660	chr3R	26862694	5` UTR	Lerp -	chr3R	26883024	intron	T48 +	chr3R	26903354	intron	T48 +	chr3R_11_26880001	chr3R_26880001	S2R+
857	chr3R	26908237	26908272	chr3R	26908419	26908454		7	182	3.0	4.5	3.8	1.5	217	chr3R	26908237	intron	T48 +	chr3R	26908346	intron	T48 +	chr3R	26908454	intron	T48 +	chr3R_7_26905001	chr3R_26905001	S2R+
858	chr3R	26920359	26920402	chr3R	26921077	26921121		5	719	3.5	7.0	5.2	0.8	762	chr3R	26920359	intron	sda +	chr3R	26920740	intron	sda +	chr3R	26921121	intron	sda +	chr3R_5_26920001	chr3R_26920001	S2R+
859	chr3R	27028700	27028746	chr3R	27028804	27028850		6	104	0.5	0.0	0.2	5.0	150	chr3R	27028700	intron	RYa-R +	chr3R	27028775	intron	RYa-R +	chr3R	27028850	intron	RYa-R +	chr3R_6_27025001	chr3R_27025001	S2R+
860	chr3R	27041798	27041841	chr3R	27041913	27041955		6	114	4.0	0.5	2.2	1.9	157	chr3R	27041798	intron	RYa-R +	chr3R	27041876	intron	RYa-R +	chr3R	27041955	intron	RYa-R +	chr3R_6_27040001	chr3R_27040001	S2R+
861	chr3R	27059080	27059117	chr3R	27059193	27059231		11	113	5.0	0.5	2.8	2.9	151	chr3R	27059080	exon	Nep5 -	chr3R	27059156	intron	Nep5 -	chr3R	27059231	intron	Nep5 -	chr3R_11_27055001	chr3R_27055001	S2R+
862	chr3R	27077089	27077104	chr3R	27077194	27077209		4	104	2.0	1.0	1.5	1.6	120	chr3R	27077089	intron	CG14257 +	chr3R	27077149	intron	CG14257 +	chr3R	27077209	intron	CG14257 +	chr3R_4_27075001	chr3R_27075001	S2R+
863	chr3R	27342797	27342815	chr3R	27351402	27351417	Tirant	4	8604	1.5	3.0	2.2	1.2	8620	chr3R	27342797	intron	CG42534 +	chr3R	27347107	intron	CG42534 +	chr3R	27351417	intron	CG42534 +	chr3R_4_27345001	chr3R_27345001	S2R+
864	chr3R	27420145	27420174	chr3R	27420257	27420286		7	112	0.5	1.0	0.8	3.9	141	chr3R	27420145	intron	side -	chr3R	27420216	intron	side -	chr3R	27420286	intron	side -	chr3R_7_27420001	chr3R_27420001	S2R+
865	chr3R	27706756	27706775	chr3R	27706858	27706877		6	102	1.5	2.5	2.0	2.0	121	chr3R	27706756	intergenic	CG12428 -,CG12877 +	chr3R	27706816	intergenic	CG12428 -,CG12877 +	chr3R	27706877	intergenic	CG12428 -,CG12877 +	chr3R_6_27705001	chr3R_27705001	S2R+
866	chr3R	27718555	27718593	chr3R	27718659	27718695		4	103	1.0	3.0	2.0	1.3	140	chr3R	27718555	intergenic	not near genes	chr3R	27718625	intergenic	not near genes	chr3R	27718695	intergenic	not near genes	chr3R_4_27715001	chr3R_27715001	S2R+
867	chr3R	27752740	27752787	chr3R	27753148	27753197		4	410	0.5	1.5	1.0	2.0	457	chr3R	27752740	intergenic	not near genes	chr3R	27752968	intergenic	not near genes	chr3R	27753197	intergenic	not near genes	chr3R_4_27750001	chr3R_27750001	S2R+
868	chr3R	27779249	27779286	chr3R	27779350	27779391		10	101	1.0	2.5	1.8	3.6	142	chr3R	27779249	exon	CG34353 -	chr3R	27779320	intron	CG34353 -	chr3R	27779391	intron	CG34353 -	chr3R_10_27775001	chr3R_27775001	S2R+
869	chr3R	27789064	27789098	chr3R	27789159	27789199		8	101	4.0	1.0	2.5	2.3	135	chr3R	27789064	exon	CG34353 -	chr3R	27789132	intron	CG34353 -	chr3R	27789199	intron	CG34353 -	chr3R_8_27785001	chr3R_27785001	S2R+
870	chr3R	27791643	27791648	chr3R	27794803	27794815	Rt1c	5	3166	2.5	4.5	3.5	1.1	3172	chr3R	27791643	intron	CG34353 -	chr3R	27793229	intron	CG34353 -	chr3R	27794815	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	S2R+
871	chr3R	27799914	27799963	chr3R	27800021	27800068		5	107	0.5	1.0	0.8	2.8	154	chr3R	27799914	intron	CG34353 -	chr3R	27799991	intron	CG34353 -	chr3R	27800068	intron	CG34353 -	chr3R_5_27795001	chr3R_27795001	S2R+
872	chr3R	27856747	27856783	chr3R	27858253	27858291	hopper2	6	1506	0.5	1.0	0.8	3.3	1544	chr3R	27856747	intron	CG34353 -	chr3R	27857519	intron	CG34353 -	chr3R	27858291	intron	CG34353 -	chr3R_6_27855001	chr3R_27855001	S2R+
873	chr3R	27862931	27862972	chr3R	27868261	27868302	Transpac	5	5330	0.5	0.0	0.2	4.2	5371	chr3R	27862931	intron	CG34353 -	chr3R	27865616	intron	CG34353 -	chr3R	27868302	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	S2R+
874	chr3R	28068476	28068525	chr3R	28073943	28073984	I-element	4	5465	0.0	2.0	1.0	2.0	5508	chr3R	28068476	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073984	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	S2R+
875	chr3R	28091433	28091447	chr3R	28091573	28091587		4	140	1.0	1.5	1.2	1.8	154	chr3R	28091433	intergenic	not near genes	chr3R	28091510	intergenic	not near genes	chr3R	28091587	intergenic	not near genes	chr3R_4_28090001	chr3R_28090001	S2R+
876	chr3R	28103303	28103350	chr3R	28103421	28103467		10	117	0.0	2.0	1.0	5.0	164	chr3R	28103303	intergenic	not near genes	chr3R	28103385	intergenic	not near genes	chr3R	28103467	intergenic	not near genes	chr3R_10_28100001	chr3R_28100001	S2R+
877	chr3R	28134455	28134510	chr3R	28134795	28134850		6	338	3.0	6.5	4.8	1.0	395	chr3R	28134455	intergenic	not near genes	chr3R	28134652	intergenic	not near genes	chr3R	28134850	intergenic	not near genes	chr3R_6_28130001	chr3R_28130001	S2R+
878	chr3R	28308059	28308075	chr3R	28308156	28308177		6	100	4.5	5.5	5.0	1.0	118	chr3R	28308059	intergenic	not near genes	chr3R	28308118	intergenic	not near genes	chr3R	28308177	intergenic	not near genes	chr3R_6_28305001	chr3R_28305001	S2R+
879	chr3R	28352494	28352537	chr3R	28352856	28352900		9	364	1.0	3.0	2.0	3.0	406	chr3R	28352494	exon	Or98b +	chr3R	28352697	exon	Or98b +	chr3R	28352900	exon	Or98b +	chr3R_9_28350001	chr3R_28350001	S2R+
880	chr3R	28407697	28407723	chr3R	28407807	28407834		9	110	1.5	2.0	1.8	3.2	137	chr3R	28407697	intergenic	not near genes	chr3R	28407766	intergenic	not near genes	chr3R	28407834	intergenic	not near genes	chr3R_9_28405001	chr3R_28405001	S2R+
881	chr3R	28576354	28576400	chr3R	28576468	28576514		6	114	2.0	0.0	1.0	3.0	160	chr3R	28576354	intergenic	not near genes	chr3R	28576434	intergenic	not near genes	chr3R	28576514	intergenic	not near genes	chr3R_6_28575001	chr3R_28575001	S2R+
882	chr3R	28616457	28616491	chr3R	28616576	28616610		4	119	1.0	0.0	0.5	2.7	153	chr3R	28616457	intron	CG10011 -	chr3R	28616534	intron	CG10011 -	chr3R	28616610	intron	CG10011 -	chr3R_4_28615001	chr3R_28615001	S2R+
883	chr3R	28750261	28750300	chr3R	28752496	28752536		8	2234	1.0	2.5	1.8	2.9	2275	chr3R	28750261	exon	CG10000 -	chr3R	28751398	intron	CG10000 -	chr3R	28752536	intergenic	not near genes	chr3R_8_28750001	chr3R_28750001	S2R+
884	chr3R	21907534	21907536	chr3R	28831799	28831802		52	6924267	5.0	3.5	4.2	10.0	6924268	chr3R	21907534	intergenic	CG6678 +	chr3R	25369668	intron	Fur1 -	chr3R	28831802	intron	WASp -	chr3R_52_25365001	chr3R_25365001	S2R+
885	chr3R	29023229	29023265	chr3R	29023351	29023394		5	126	2.0	3.0	2.5	1.4	165	chr3R	29023229	5` UTR	CR45567 +	chr3R	29023312	5` UTR	CR45567 +	chr3R	29023394	5` UTR	CR45567 +	chr3R_5_29020001	chr3R_29020001	S2R+
886	chr3R	29070033	29070070	chr3R	29070139	29070176		6	106	0.5	0.5	0.5	4.0	143	chr3R	29070033	intron	CG11873 +	chr3R	29070104	intron	CG11873 +	chr3R	29070176	intron	CG11873 +	chr3R_6_29070001	chr3R_29070001	S2R+
887	chr3R	29132664	29132691	chr3R	29152343	29152369		4	19679	10.0	14.0	12.0	0.3	19705	chr3R	29132664	intron	Vha100-1 +	chr3R	29142516	exon	CG14516 +	chr3R	29152369	exon	Slbp -	chr3R_4_29140001	chr3R_29140001	S2R+
888	chr3R	29213035	29213078	chr3R	29213143	29213185		16	108	5.5	4.5	5.0	2.7	150	chr3R	29213035	intergenic	not near genes	chr3R	29213110	intergenic	not near genes	chr3R	29213185	intergenic	not near genes	chr3R_16_29210001	chr3R_29210001	S2R+
889	chr3R	29237230	29237282	chr3R	29239276	29239328		4	2046	16.0	3.0	9.5	0.4	2098	chr3R	29237230	exon	CG11951 -	chr3R	29238279	intron	CG11951 -	chr3R	29239328	exon	CG31427 -	chr3R_4_29235001	chr3R_29235001	S2R+
890	chr3R	29237527	29237535	chr3R	29239410	29239419		5	1884	12.5	5.5	9.0	0.5	1892	chr3R	29237527	exon	CG11951 -	chr3R	29238473	intron	CG11951 -	chr3R	29239419	exon	CG31427 -	chr3R_5_29235001	chr3R_29235001	S2R+
891	chr3R	29256251	29256300	chr3R	29256356	29256405		10	105	1.0	8.0	4.5	1.8	154	chr3R	29256251	intergenic	CG45544 +,stg -	chr3R	29256328	intergenic	CG45544 +	chr3R	29256405	intergenic	CG45544 +	chr3R_10_29255001	chr3R_29255001	S2R+
892	chr3R	29264167	29264194	chr3R	29264293	29264321		4	127	0.5	0.5	0.5	2.7	154	chr3R	29264167	intergenic	not near genes	chr3R	29264244	intergenic	not near genes	chr3R	29264321	intergenic	not near genes	chr3R_4_29260001	chr3R_29260001	S2R+
893	chr3R	29282791	29282815	chr3R	29282900	29282926		7	110	2.5	6.0	4.2	1.3	135	chr3R	29282791	intergenic	not near genes	chr3R	29282858	intergenic	not near genes	chr3R	29282926	intergenic	not near genes	chr3R_7_29280001	chr3R_29280001	S2R+
894	chr3R	29319810	29319845	chr3R	29320153	29320189	jockey	4	344	1.5	2.5	2.0	1.3	379	chr3R	29319810	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320189	intergenic	not near genes	chr3R_4_29315001	chr3R_29315001	S2R+
895	chr3R	29447259	29447311	chr3R	29447367	29447418		7	108	1.5	1.5	1.5	2.8	159	chr3R	29447259	intron	Ptp99A +	chr3R	29447338	intron	Ptp99A +	chr3R	29447418	intron	Ptp99A +	chr3R_7_29445001	chr3R_29445001	S2R+
896	chr3R	29471983	29472035	chr3R	29472101	29472153		5	118	2.5	1.0	1.8	1.8	170	chr3R	29471983	intron	Ptp99A +	chr3R	29472068	intron	Ptp99A +	chr3R	29472153	intron	Ptp99A +	chr3R_5_29470001	chr3R_29470001	S2R+
897	chr3R	29526234	29526262	chr3R	29526346	29526374		5	112	0.0	1.5	0.8	2.8	140	chr3R	29526234	intergenic	not near genes	chr3R	29526304	intergenic	not near genes	chr3R	29526374	intergenic	not near genes	chr3R_5_29525001	chr3R_29525001	S2R+
898	chr3R	29590353	29590404	chr3R	29590471	29590521		7	118	3.0	0.5	1.8	2.5	168	chr3R	29590353	exon	CG31041 -	chr3R	29590437	intron	CG31041 -	chr3R	29590521	exon	CG31041 -	chr3R_7_29590001	chr3R_29590001	S2R+
899	chr3R	29663198	29663239	chr3R	29679305	29679346		10	16107	11.5	14.5	13.0	0.7	16148	chr3R	29663198	intergenic	not near genes	chr3R	29671272	intron	ppk30 +	chr3R	29679346	exon	Cap-D2 +	chr3R_10_29670001	chr3R_29670001	S2R+
900	chr3R	29702125	29702167	chr3R	29702231	29702275		9	106	3.5	0.0	1.8	3.2	150	chr3R	29702125	intergenic	not near genes	chr3R	29702200	intergenic	not near genes	chr3R	29702275	intergenic	not near genes	chr3R_9_29700001	chr3R_29700001	S2R+
901	chr3R	29738259	29738283	chr3R	29739751	29739775	hobo	4	1492	3.5	5.5	4.5	0.7	1516	chr3R	29738259	intergenic	CG1969 +,CG7598 +	chr3R	29739017	intron	CG1969 +	chr3R	29739775	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	S2R+
902	chr3R	29758913	29758962	chr3R	29759016	29759065		20	101	5.0	8.5	6.8	2.6	152	chr3R	29758913	3` UTR	CR44953 -	chr3R	29758989	3` UTR	CR44953 -	chr3R	29759065	intergenic	CR44953 -	chr3R_20_29755001	chr3R_29755001	S2R+
903	chr3R	29760340	29760384	chr3R	29761566	29761610	pogo	7	1226	4.5	1.0	2.8	1.8	1270	chr3R	29760340	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761610	intergenic	not near genes	chr3R_7_29760001	chr3R_29760001	S2R+
904	chr3R	29744604	29744642	chr3R	29794757	29794795		5	50153	24.0	25.5	24.8	0.2	50191	chr3R	29744604	exon	CG7609 -	chr3R	29769700	intron	kay +	chr3R	29794795	intron	sro +	chr3R_5_29765001	chr3R_29765001	S2R+
905	chr3R	29866262	29866319	chr3R	29866369	29866426		6	105	1.0	2.0	1.5	2.4	164	chr3R	29866262	intron	Zip99C -	chr3R	29866344	intron	Zip99C -	chr3R	29866426	intron	Zip99C -	chr3R_6_29865001	chr3R_29865001	S2R+
906	chr3R	29882024	29882041	chr3R	29891206	29891222	roo	4	9182	4.5	0.5	2.5	1.1	9198	chr3R	29882024	intron	CG31038 +	chr3R	29886623	intron	CG31038 +	chr3R	29891222	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	S2R+
907	chr3R	29950549	29950588	chr3R	29950651	29950685		8	100	0.5	2.0	1.2	3.6	136	chr3R	29950549	intergenic	TkR99D -	chr3R	29950617	intergenic	TkR99D -	chr3R	29950685	intergenic	TkR99D -	chr3R_8_29950001	chr3R_29950001	S2R+
908	chr3R	29966056	29966074	chr3R	29966157	29966176		7	102	2.5	4.5	3.5	1.6	120	chr3R	29966056	intron	TkR99D -	chr3R	29966116	intron	TkR99D -	chr3R	29966176	intron	TkR99D -	chr3R_7_29965001	chr3R_29965001	S2R+
909	chr3R	29976516	29976556	chr3R	29976753	29976792		6	236	1.5	2.5	2.0	2.0	276	chr3R	29976516	intergenic	not near genes	chr3R	29976654	intergenic	not near genes	chr3R	29976792	intergenic	not near genes	chr3R_6_29975001	chr3R_29975001	S2R+
910	chr3R	30013654	30013694	chr3R	30013762	30013802		5	107	2.0	1.0	1.5	2.0	148	chr3R	30013654	intron	CG7920 -	chr3R	30013728	intron	CG7920 -	chr3R	30013802	intron	CG7920 -	chr3R_5_30010001	chr3R_30010001	S2R+
911	chr3R	30124938	30124971	chr3R	30125038	30125072		5	101	1.5	1.5	1.5	2.0	134	chr3R	30124938	intergenic	CG45073 -	chr3R	30125005	intergenic	CG45073 -	chr3R	30125072	intergenic	CG45073 -	chr3R_5_30125001	chr3R_30125001	S2R+
912	chr3R	30136943	30136981	chr3R	30137047	30137084		11	104	2.0	2.0	2.0	3.7	141	chr3R	30136943	exon	AdoR -	chr3R	30137014	intron	AdoR -	chr3R	30137084	exon	AdoR -	chr3R_11_30135001	chr3R_30135001	S2R+
913	chr3R	30156861	30156898	chr3R	30156965	30157002		5	104	0.5	0.5	0.5	3.3	141	chr3R	30156861	intron	CG11498 -	chr3R	30156932	intron	CG11498 -	chr3R	30157002	intron	CG11498 -	chr3R_5_30155001	chr3R_30155001	S2R+
914	chr3R	30184208	30184258	chr3R	30184347	30184397		9	136	0.5	0.5	0.5	6.0	189	chr3R	30184208	3` UTR	CR44262 -	chr3R	30184302	3` UTR	CR44262 -	chr3R	30184397	3` UTR	CR44262 -	chr3R_9_30180001	chr3R_30180001	S2R+
915	chr3R	30203365	30203387	chr3R	30203469	30203490		4	103	4.0	4.0	4.0	0.8	125	chr3R	30203365	intergenic	CG9743 -	chr3R	30203428	intergenic	CG9743 -	chr3R	30203490	intergenic	CG9743 -	chr3R_4_30200001	chr3R_30200001	S2R+
916	chr3R	30252287	30252297	chr3R	30252439	30252443		4	151	4.5	13.5	9.0	0.4	156	chr3R	30252287	exon	CG9682 +	chr3R	30252365	exon	CG9682 +	chr3R	30252443	exon	CG9682 +	chr3R_4_30250001	chr3R_30250001	S2R+
917	chr3R	30307098	30307135	chr3R	30307204	30307239		7	106	5.0	2.0	3.5	1.6	141	chr3R	30307098	intron	hdc +	chr3R	30307168	intron	hdc +	chr3R	30307239	intron	hdc +	chr3R_7_30305001	chr3R_30305001	S2R+
918	chr3R	30456403	30456425	chr3R	30456508	30456528		5	104	1.0	2.0	1.5	2.0	125	chr3R	30456403	intergenic	CG2224 -	chr3R	30456466	3` UTR	CG2224 -	chr3R	30456528	3` UTR	CG2224 -	chr3R_5_30455001	chr3R_30455001	S2R+
919	chr3R	30458004	30458048	chr3R	30458106	30458153		7	104	0.5	3.5	2.0	2.3	149	chr3R	30458004	intron	CG2224 -	chr3R	30458078	intron	CG2224 -	chr3R	30458153	intron	CG2224 -	chr3R_7_30455001	chr3R_30455001	S2R+
920	chr3R	30461467	30461515	chr3R	30461609	30461657		6	142	0.5	2.0	1.2	2.7	190	chr3R	30461467	intron	CDase +	chr3R	30461562	intron	CDase +	chr3R	30461657	intron	CDase +	chr3R_6_30460001	chr3R_30460001	S2R+
921	chr3R	30480463	30480501	chr3R	30482956	30482993	jockey	9	2493	1.5	3.5	2.5	2.6	2530	chr3R	30480463	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482993	intron	PH4alphaEFB +	chr3R_9_30480001	chr3R_30480001	S2R+
922	chr3R	30485029	30485056	chr3R	30485130	30485157		5	100	1.5	1.5	1.5	2.0	128	chr3R	30485029	intron	PH4alphaEFB +	chr3R	30485093	intron	PH4alphaEFB +	chr3R	30485157	intron	PH4alphaEFB +	chr3R_5_30485001	chr3R_30485001	S2R+
923	chr3R	30505806	30505837	chr3R	30505917	30505950		4	112	0.0	2.0	1.0	2.0	144	chr3R	30505806	intergenic	PH4alphaSG1 -,CG15539 +	chr3R	30505878	intergenic	CG15539 +,PH4alphaSG1 -	chr3R	30505950	intergenic	CG15539 +,PH4alphaSG1 -	chr3R_4_30505001	chr3R_30505001	S2R+
924	chr3R	30554674	30554710	chr3R	30554777	30554813		4	102	2.0	2.5	2.2	1.2	139	chr3R	30554674	intron,3` UTR	tmod +,CG34155 -	chr3R	30554744	intron,3` UTR	tmod +,CG34155 -	chr3R	30554813	intron,3` UTR	tmod +,CG34155 -	chr3R_4_30550001	chr3R_30550001	S2R+
925	chr3R	30627584	30627635	chr3R	30627689	30627731		7	103	0.5	2.5	1.5	2.8	147	chr3R	30627584	3` UTR	CG2267 -	chr3R	30627658	exon	CG2267 -	chr3R	30627731	exon	CG2267 -	chr3R_7_30625001	chr3R_30625001	S2R+
926	chr3R	30709337	30709340	chr3R	30774580	30774587		4	65244	9.0	15.0	12.0	0.3	65250	chr3R	30709337	intergenic	not near genes	chr3R	30741962	intergenic	not near genes	chr3R	30774587	exon	zfh1 +	chr3R_4_30740001	chr3R_30740001	S2R+
927	chr3R	30799043	30799079	chr3R	30799144	30799173		7	100	3.5	2.0	2.8	1.8	130	chr3R	30799043	intron	wts -	chr3R	30799108	intron	wts -	chr3R	30799173	intron	wts -	chr3R_7_30795001	chr3R_30795001	S2R+
928	chr3R	30818784	30818810	chr3R	30820374	30820400	1360	4	1590	1.5	2.0	1.8	1.4	1616	chr3R	30818784	intron	cindr +	chr3R	30819592	intron	cindr +	chr3R	30820400	intron	cindr +	chr3R_4_30815001	chr3R_30815001	S2R+
929	chr3R	30982576	30982625	chr3R	30982692	30982742		9	116	1.0	3.0	2.0	3.0	166	chr3R	30982576	intron	5-HT7 -	chr3R	30982659	intron	5-HT7 -	chr3R	30982742	intron	5-HT7 -	chr3R_9_30980001	chr3R_30980001	S2R+
930	chr3R	30996622	30996654	chr3R	30996871	30996903		5	249	2.0	0.5	1.2	2.3	281	chr3R	30996622	intron	5-HT7 -	chr3R	30996762	intron	5-HT7 -	chr3R	30996903	intron	5-HT7 -	chr3R_5_30995001	chr3R_30995001	S2R+
931	chr3R	31042117	31042142	chr3R	31042229	31042254		6	112	2.5	2.5	2.5	1.7	137	chr3R	31042117	intron	CanA1 +	chr3R	31042186	intron	CanA1 +	chr3R	31042254	intron	CanA1 +	chr3R_6_31040001	chr3R_31040001	S2R+
932	chr3R	31074211	31074256	chr3R	31081834	31081879	springer	4	7622	1.5	1.0	1.2	1.8	7668	chr3R	31074211	intron	Sox100B +	chr3R	31078045	intron	Sox100B +	chr3R	31081879	intron	Sox100B +	chr3R_4_31075001	chr3R_31075001	S2R+
933	chr3R	31183629	31183667	chr3R	31183744	31183783		6	115	2.5	1.5	2.0	2.0	154	chr3R	31183629	intron	mesh -	chr3R	31183706	intron	mesh -	chr3R	31183783	intron	mesh -	chr3R_6_31180001	chr3R_31180001	S2R+
934	chr3R	31413073	31413100	chr3R	31418298	31418322	copia	10	5224	4.5	0.0	2.2	3.1	5249	chr3R	31413073	intron	Gprk2 +	chr3R	31415698	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_10_31415001	chr3R_31415001	S2R+
935	chr3R	31435347	31435388	chr3R	31435524	31435564		6	177	0.5	1.0	0.8	3.3	217	chr3R	31435347	intron	Gprk2 +	chr3R	31435456	intron	Gprk2 +	chr3R	31435564	intron	Gprk2 +	chr3R_6_31435001	chr3R_31435001	S2R+
936	chr3R	31441525	31441568	chr3R	31441922	31441964		7	397	1.0	5.0	3.0	1.8	439	chr3R	31441525	intron	Gprk2 +	chr3R	31441744	intron	Gprk2 +	chr3R	31441964	intron	Gprk2 +	chr3R_7_31440001	chr3R_31440001	S2R+
937	chr3R	31477347	31477373	chr3R	31477539	31477565		6	192	2.0	3.0	2.5	1.7	218	chr3R	31477347	intergenic	not near genes	chr3R	31477456	intergenic	not near genes	chr3R	31477565	intergenic	not near genes	chr3R_6_31475001	chr3R_31475001	S2R+
938	chr3R	31498412	31498423	chr3R	31498529	31498540		4	117	5.5	3.5	4.5	0.7	128	chr3R	31498412	intergenic	not near genes	chr3R	31498476	intergenic	not near genes	chr3R	31498540	intergenic	not near genes	chr3R_4_31495001	chr3R_31495001	S2R+
939	chr3R	31558482	31558522	chr3R	31558626	31558666		5	143	3.0	2.0	2.5	1.4	184	chr3R	31558482	exon	nyo +	chr3R	31558574	intron	nyo +	chr3R	31558666	intron	nyo +	chr3R_5_31555001	chr3R_31555001	S2R+
940	chr3R	31597029	31597062	chr3R	31597136	31597163		5	106	0.0	1.0	0.5	3.3	134	chr3R	31597029	3` UTR	CycG -	chr3R	31597096	3` UTR	CycG -	chr3R	31597163	3` UTR	CycG -	chr3R_5_31595001	chr3R_31595001	S2R+
941	chr3R	31691527	31691544	chr3R	31696317	31696335	Doc	4	4790	3.0	1.0	2.0	1.3	4808	chr3R	31691527	intergenic	not near genes	chr3R	31693931	intergenic	not near genes	chr3R	31696335	intergenic	not near genes	chr3R_4_31690001	chr3R_31690001	S2R+
942	chr3R	31735074	31735127	chr3R	31735195	31735247		4	121	1.0	2.0	1.5	1.6	173	chr3R	31735074	3` UTR	ttk +	chr3R	31735160	3` UTR	ttk +	chr3R	31735247	3` UTR	ttk +	chr3R_4_31735001	chr3R_31735001	S2R+
943	chr3R	31829358	31829404	chr3R	31829457	31829503		21	99	5.0	2.5	3.8	4.4	145	chr3R	31829358	intron	RhoGAP100F +	chr3R	31829430	intron	RhoGAP100F +	chr3R	31829503	intron	RhoGAP100F +	chr3R_21_31825001	chr3R_31825001	S2R+
944	chr3R	31858760	31858775	chr3R	31858871	31858886		5	111	2.0	5.5	3.8	1.0	126	chr3R	31858760	intron	heph -	chr3R	31858823	intron	heph -	chr3R	31858886	intron	heph -	chr3R_5_31855001	chr3R_31855001	S2R+
945	chr3R	31860299	31860347	chr3R	31860520	31860570		6	223	2.0	0.5	1.2	2.7	271	chr3R	31860299	intron	heph -	chr3R	31860434	intron	heph -	chr3R	31860570	intron	heph -	chr3R_6_31860001	chr3R_31860001	S2R+
946	chr3R	31883232	31883266	chr3R	31883746	31883779		5	514	3.0	1.5	2.2	1.6	547	chr3R	31883232	intron	heph -	chr3R	31883506	intron	heph -	chr3R	31883779	intron	heph -	chr3R_5_31880001	chr3R_31880001	S2R+
947	chr3R	31885657	31885694	chr3R	31885759	31885796		7	102	1.5	1.0	1.2	3.2	139	chr3R	31885657	intron	heph -	chr3R	31885726	intron	heph -	chr3R	31885796	intron	heph -	chr3R_7_31885001	chr3R_31885001	S2R+
948	chr3R	31908889	31908927	chr3R	31908991	31909029		6	98	4.5	1.5	3.0	1.5	140	chr3R	31908889	intron	heph -	chr3R	31908959	intron	heph -	chr3R	31909029	intron	heph -	chr3R_6_31905001	chr3R_31905001	S2R+
949	chr3R	31931180	31931207	chr3R	31931288	31931315		5	108	1.0	0.5	0.8	2.8	135	chr3R	31931180	intron	heph -	chr3R	31931248	intron	heph -	chr3R	31931315	intron	heph -	chr3R_5_31930001	chr3R_31930001	S2R+
950	chr3R	31943110	31943146	chr3R	31943229	31943265		4	119	1.0	2.0	1.5	1.6	155	chr3R	31943110	intron	heph -	chr3R	31943188	intron	heph -	chr3R	31943265	intron	heph -	chr3R_4_31940001	chr3R_31940001	S2R+
951	chr3R	31997982	31998016	chr3R	32005477	32005511	blood	4	7494	1.0	2.0	1.5	1.6	7529	chr3R	31997982	intron	heph -	chr3R	32001746	intron	heph -	chr3R	32005511	intron	heph -	chr3R_4_32000001	chr3R_32000001	S2R+
952	chr4	671593	671618	chr4	680201	680226	Tirant	4	8608	0.0	1.5	0.8	2.2	8633	chr4	671593	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680226	intron	CG11360 +	chr4_4_675001	chr4_675001	S2R+
953	chrX	318462	318491	chrX	323573	323600	flea	4	5108	1.5	0.5	1.0	2.0	5138	chrX	318462	intron,intron	CG3777 +,CG32816 -	chrX	321031	intron,intron	CG3777 +,CG32816 -	chrX	323600	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	S2R+
954	chrX	512474	512507	chrX	21907803	21907835		4	21395328	1.0	1.5	1.2	1.8	21395361	chrX	512474	3` UTR,intron	elav -,arg +	chrX	11210154	intergenic	not near genes	chrX	21907835	intergenic	not near genes	chrX_4_11210001	chrX_11210001	S2R+
955	chrX	551405	551452	chrX	558990	559037	412	5	7585	1.0	1.5	1.2	2.3	7632	chrX	551405	intron	Appl +	chrX	555221	intron	Appl +	chrX	559037	intron	Appl +	chrX_5_555001	chrX_555001	S2R+
956	chrX	802272	802319	chrX	802374	802408		5	99	2.5	0.5	1.5	2.0	136	chrX	802272	exon	CG13359 -	chrX	802340	exon	CG13359 -	chrX	802408	exon	CG13359 -	chrX_5_800001	chrX_800001	S2R+
957	chrX	906677	906732	chrX	908491	908544	S-element	10	1814	1.0	3.0	2.0	3.3	1867	chrX	906677	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908544	intron	CG43867 -	chrX_10_905001	chrX_905001	S2R+
958	chrX	939254	939300	chrX	21907786	21907832		8	20968531	0.0	1.5	0.8	4.4	20968578	chrX	939254	3` UTR,3` UTR	CG32815 +,CG3704 -	chrX	11423543	intron	Gs2 +	chrX	21907832	intergenic	not near genes	chrX_8_11420001	chrX_11420001	S2R+
959	chrX	1903253	1903288	chrX	1903359	1903394		6	104	1.0	1.5	1.2	2.7	141	chrX	1903253	5` UTR	CR43864 +	chrX	1903324	5` UTR	CR43864 +	chrX	1903394	5` UTR	CR43864 +	chrX_6_1900001	chrX_1900001	S2R+
960	chrX	1954866	1954911	chrX	1962829	1962876	Stalker2	10	7963	1.5	1.5	1.5	4.0	8010	chrX	1954866	intron	Hr4 +	chrX	1958871	intron	Hr4 +	chrX	1962876	intron	Hr4 +	chrX_10_1955001	chrX_1955001	S2R+
961	chrX	2399813	2399866	chrX	2408191	2408243	roo	13	8377	1.5	2.5	2.0	4.3	8430	chrX	2399813	intergenic	not near genes	chrX	2404028	intergenic	not near genes	chrX	2408243	intergenic	not near genes	chrX_13_2400001	chrX_2400001	S2R+
962	chrX	3306331	3306377	chrX	3306437	3306483		4	106	1.0	2.5	1.8	1.4	152	chrX	3306331	intron	dnc +	chrX	3306407	intron	dnc +	chrX	3306483	intron	dnc +	chrX_4_3305001	chrX_3305001	S2R+
963	chrX	3351782	3351810	chrX	3351893	3351921		6	103	2.5	3.0	2.8	1.6	139	chrX	3351782	intergenic	not near genes	chrX	3351852	intergenic	not near genes	chrX	3351921	intergenic	not near genes	chrX_6_3350001	chrX_3350001	S2R+
964	chrX	3713079	3713126	chrX	3713212	3713260		4	133	1.0	1.0	1.0	2.0	181	chrX	3713079	intron	Rala -	chrX	3713170	intron	Rala -	chrX	3713260	intron	Rala -	chrX_4_3710001	chrX_3710001	S2R+
965	chrX	3817074	3817109	chrX	3817183	3817220		10	109	2.0	4.0	3.0	2.5	146	chrX	3817074	intron	ec +	chrX	3817147	intron	ec +	chrX	3817220	intron	ec +	chrX_10_3815001	chrX_3815001	S2R+
966	chrX	3842329	3842342	chrX	3842572	3842585	pogo	6	242	1.0	1.5	1.2	2.7	256	chrX	3842329	intron	ec +	chrX	3842457	intron	ec +	chrX	3842585	intron	ec +	chrX_6_3840001	chrX_3840001	S2R+
967	chrX	3851595	3851644	chrX	3875161	3875208		15	23566	42.0	33.0	37.5	0.4	23613	chrX	3851595	intron	ec +	chrX	3863402	exon	yin -	chrX	3875208	intron	CG2930 +	chrX_15_3860001	chrX_3860001	S2R+
968	chrX	3881251	3881303	chrX	3881415	3881466		7	163	1.5	1.0	1.2	3.2	215	chrX	3881251	intron	VhaAC39-1 +	chrX	3881358	intron	VhaAC39-1 +	chrX	3881466	exon	VhaAC39-1 +	chrX_7_3880001	chrX_3880001	S2R+
969	chrX	3915512	3915553	chrX	3915624	3915652		5	109	0.0	0.0	0.0	5.0	140	chrX	3915512	intron	CG42541 -	chrX	3915582	intron	CG42541 -	chrX	3915652	intron	CG42541 -	chrX_5_3915001	chrX_3915001	S2R+
970	chrX	4029504	4029554	chrX	4029719	4029769		5	215	2.0	0.5	1.2	2.3	265	chrX	4029504	intergenic	not near genes	chrX	4029636	intergenic	not near genes	chrX	4029769	intergenic	not near genes	chrX_5_4025001	chrX_4025001	S2R+
971	chrX	4101851	4101895	chrX	4101955	4102000		5	102	1.5	6.5	4.0	1.0	149	chrX	4101851	exon	CG15375 +	chrX	4101926	exon	CG15375 +	chrX	4102000	exon	CG15375 +	chrX_5_4100001	chrX_4100001	S2R+
972	chrX	4084797	4084854	chrX	4120404	4120461		21	35607	30.0	22.5	26.2	0.8	35664	chrX	4084797	exon	CG43689 +	chrX	4102629	3` UTR	CG15375 +	chrX	4120461	intron	tyf +	chrX_21_4100001	chrX_4100001	S2R+
973	chrX	4240162	4240195	chrX	4240314	4240347		5	152	0.5	1.5	1.0	2.5	185	chrX	4240162	intergenic	not near genes	chrX	4240254	intergenic	not near genes	chrX	4240347	intergenic	not near genes	chrX_5_4240001	chrX_4240001	S2R+
974	chrX	4613530	4613573	chrX	4613645	4613688		6	113	1.0	2.0	1.5	2.4	158	chrX	4613530	intergenic	not near genes	chrX	4613609	intergenic	not near genes	chrX	4613688	intergenic	not near genes	chrX_6_4610001	chrX_4610001	S2R+
975	chrX	4744134	4744173	chrX	4744254	4744296		4	122	0.0	0.5	0.2	3.3	162	chrX	4744134	intergenic	not near genes	chrX	4744215	intergenic	not near genes	chrX	4744296	intergenic	not near genes	chrX_4_4740001	chrX_4740001	S2R+
976	chrX	4816514	4816535	chrX	4817345	4817365		4	829	0.5	2.0	1.2	1.8	851	chrX	4816514	intergenic	not near genes	chrX	4816940	intergenic	not near genes	chrX	4817365	intergenic	not near genes	chrX_4_4815001	chrX_4815001	S2R+
977	chrX	4931327	4931372	chrX	4931446	4931491		7	118	4.0	3.0	3.5	1.6	164	chrX	4931327	intron	CG44774 -	chrX	4931409	intron	CG44774 -	chrX	4931491	intron	CG44774 -	chrX_7_4930001	chrX_4930001	S2R+
978	chrX	5518717	5518732	chrX	5518827	5518842		4	110	1.0	1.5	1.2	1.8	125	chrX	5518717	3` UTR	CG12730 +	chrX	5518780	intergenic	CG12730 +	chrX	5518842	intergenic	CG12730 +	chrX_4_5515001	chrX_5515001	S2R+
979	chrX	6333441	6333488	chrX	21907786	21907838		4	15574348	2.5	1.5	2.0	1.3	15574397	chrX	6333441	intergenic	CG42240 +	chrX	14120640	intergenic	not near genes	chrX	21907838	intergenic	not near genes	chrX_4_14120001	chrX_14120001	S2R+
980	chrX	6562805	6562832	chrX	6571308	6571339	Tirant	4	8505	0.5	1.0	0.8	2.2	8534	chrX	6562805	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571339	intron	CG34417 +	chrX_4_6565001	chrX_6565001	S2R+
981	chrX	7035145	7035186	chrX	7035285	7035326		4	140	0.5	0.0	0.2	3.3	181	chrX	7035145	intron	CG12541 -	chrX	7035236	intron	CG12541 -	chrX	7035326	intron	CG12541 -	chrX_4_7035001	chrX_7035001	S2R+
982	chrX	7048638	7048654	chrX	7048740	7048755		4	102	0.5	2.0	1.2	1.8	117	chrX	7048638	intron	CG12541 -	chrX	7048696	intron	CG12541 -	chrX	7048755	intron	CG12541 -	chrX_4_7045001	chrX_7045001	S2R+
983	chrX	9129464	9129495	chrX	9129575	9129606		5	108	0.0	0.5	0.2	4.2	142	chrX	9129464	intron	fend -	chrX	9129535	intron	fend -	chrX	9129606	intron	fend -	chrX_5_9125001	chrX_9125001	S2R+
984	chrX	9337917	9337942	chrX	9338034	9338059		7	116	2.5	0.5	1.5	2.8	142	chrX	9337917	intron	CG34449 -	chrX	9337988	intron	CG34449 -	chrX	9338059	exon	CG34449 -	chrX_7_9335001	chrX_9335001	S2R+
985	chrX	9459589	9459612	chrX	9459682	9459706		4	100	3.5	2.0	2.8	1.1	117	chrX	9459589	intron	mgl -	chrX	9459648	intron	mgl -	chrX	9459706	intron	mgl -	chrX_4_9455001	chrX_9455001	S2R+
986	chrX	9465117	9465145	chrX	9465231	9465264		4	116	2.5	2.5	2.5	1.1	147	chrX	9465117	intron	mgl -	chrX	9465190	intron	mgl -	chrX	9465264	intron	mgl -	chrX_4_9465001	chrX_9465001	S2R+
987	chrX	9508121	9508166	chrX	9509664	9509701	jockey	7	1541	2.0	2.0	2.0	2.3	1580	chrX	9508121	intron	CG32700 -	chrX	9508911	intron	CG32700 -	chrX	9509701	intron	CG32700 -	chrX_7_9505001	chrX_9505001	S2R+
988	chrX	9575766	9575804	chrX	9576114	9576153	mdg3	10	348	2.5	2.5	2.5	2.9	387	chrX	9575766	intron,exon	CG32699 -,CG42395 -	chrX	9575960	intron,intron	CG32699 -,CG42395 -	chrX	9576153	intron,5` UTR	CG32699 -,CG42395 -	chrX_10_9575001	chrX_9575001	S2R+
989	chrX	9599147	9599198	chrX	9599250	9599301		14	102	3.0	3.0	3.0	3.5	154	chrX	9599147	intergenic	not near genes	chrX	9599224	intergenic	not near genes	chrX	9599301	intergenic	not near genes	chrX_14_9595001	chrX_9595001	S2R+
990	chrX	9837822	9837852	chrX	9839726	9839756		4	1904	10.5	16.5	13.5	0.3	1934	chrX	9837822	intron	CG32698 +	chrX	9838789	intron	CG32698 +	chrX	9839756	intron	CG32698 +	chrX_4_9835001	chrX_9835001	S2R+
991	chrX	9923365	9923415	chrX	9923481	9923531		8	115	3.0	1.0	2.0	2.7	166	chrX	9923365	intergenic	not near genes	chrX	9923448	intergenic	not near genes	chrX	9923531	intergenic	not near genes	chrX_8_9920001	chrX_9920001	S2R+
992	chrX	10138193	10138247	chrX	10145722	10145773	412	4	7528	0.5	0.5	0.5	2.7	7580	chrX	10138193	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145773	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	S2R+
993	chrX	10154259	10154305	chrX	10154360	10154405		5	100	1.5	3.0	2.2	1.6	146	chrX	10154259	intron,intron	CR44894 -,CG12645 +	chrX	10154332	intron,intron	CR44894 -,CG12645 +	chrX	10154405	intron,exon	CR44894 -,CG12645 +	chrX_5_10150001	chrX_10150001	S2R+
994	chrX	10216823	10216851	chrX	10216925	10216955		4	104	1.5	3.5	2.5	1.1	132	chrX	10216823	3` UTR	l(1)G0230 +	chrX	10216889	3` UTR	l(1)G0230 +	chrX	10216955	3` UTR	l(1)G0230 +	chrX_4_10215001	chrX_10215001	S2R+
995	chrX	10507947	10507974	chrX	10517630	10517657		9	9682	17.0	14.5	15.8	0.5	9710	chrX	10507947	intron	spri -	chrX	10512802	intron	spri -	chrX	10517657	intron	spri -	chrX_9_10510001	chrX_10510001	S2R+
996	chrX	10550315	10550355	chrX	10550416	10550458		7	103	4.0	1.5	2.8	1.8	143	chrX	10550315	intron	spri -	chrX	10550386	intron	spri -	chrX	10550458	intron	spri -	chrX_7_10550001	chrX_10550001	S2R+
997	chrX	10550838	10550884	chrX	10552330	10552376	hobo	12	1492	1.0	1.5	1.2	5.5	1538	chrX	10550838	intron	spri -	chrX	10551607	intron	spri -	chrX	10552376	intron	spri -	chrX_12_10550001	chrX_10550001	S2R+
998	chrX	10803008	10803047	chrX	10803118	10803144		4	107	2.0	0.0	1.0	2.0	136	chrX	10803008	intron	Imp -	chrX	10803076	intron	Imp -	chrX	10803144	intron	Imp -	chrX_4_10800001	chrX_10800001	S2R+
999	chrX	10778804	10778831	chrX	10804719	10804746		4	25916	6.5	3.0	4.8	0.7	25942	chrX	10778804	3` UTR	CG15211 +	chrX	10791775	3` UTR	Imp -	chrX	10804746	intron	Imp -	chrX_4_10790001	chrX_10790001	S2R+
1000	chrX	11191873	11191923	chrX	11191976	11192025		4	102	0.0	0.0	0.0	4.0	152	chrX	11191873	intergenic	not near genes	chrX	11191949	intergenic	not near genes	chrX	11192025	intergenic	not near genes	chrX_4_11190001	chrX_11190001	S2R+
1001	chrX	11936560	11936589	chrX	11936681	11936711		5	123	0.0	3.0	1.5	2.0	151	chrX	11936560	intron	cac -	chrX	11936636	intron	cac -	chrX	11936711	exon	cac -	chrX_5_11935001	chrX_11935001	S2R+
1002	chrX	13146575	13146610	chrX	13146688	13146723		5	113	1.0	0.0	0.5	3.3	148	chrX	13146575	intron	CG32645 +	chrX	13146649	intron	CG32645 +	chrX	13146723	intron	CG32645 +	chrX_5_13145001	chrX_13145001	S2R+
1003	chrX	13734081	13734110	chrX	13734202	13734231		5	121	1.0	3.0	2.0	1.7	150	chrX	13734081	intron	g -	chrX	13734156	intron	g -	chrX	13734231	intron	g -	chrX_5_13730001	chrX_13730001	S2R+
1004	chrX	13908774	13908794	chrX	13908877	13908894		4	102	0.5	0.5	0.5	2.7	120	chrX	13908774	intron	mamo -	chrX	13908834	intron	mamo -	chrX	13908894	intron	mamo -	chrX_4_13905001	chrX_13905001	S2R+
1005	chrX	13943271	13943300	chrX	13943387	13943416		4	116	0.0	3.0	1.5	1.6	145	chrX	13943271	intron	mamo -	chrX	13943344	intron	mamo -	chrX	13943416	intron	mamo -	chrX_4_13940001	chrX_13940001	S2R+
1006	chrX	14560259	14560289	chrX	14560368	14560398		4	108	3.0	1.5	2.2	1.2	139	chrX	14560259	intergenic	not near genes	chrX	14560328	intergenic	not near genes	chrX	14560398	intergenic	not near genes	chrX_4_14560001	chrX_14560001	S2R+
1007	chrX	14968058	14968101	chrX	14968161	14968205		4	104	0.0	2.5	1.2	1.8	147	chrX	14968058	intron	eag +	chrX	14968132	intron	eag +	chrX	14968205	intron	eag +	chrX_4_14965001	chrX_14965001	S2R+
1008	chrX	15127277	15127291	chrX	15127386	15127402		4	110	1.0	2.0	1.5	1.6	125	chrX	15127277	intron	drd +	chrX	15127340	intron	drd +	chrX	15127402	intron	drd +	chrX_4_15125001	chrX_15125001	S2R+
1009	chrX	15666189	15666223	chrX	15666291	15666323		8	102	1.0	1.5	1.2	3.6	134	chrX	15666189	intergenic	CR43299 -	chrX	15666256	intergenic	not near genes	chrX	15666323	intergenic	not near genes	chrX_8_15665001	chrX_15665001	S2R+
1010	chrX	17282858	17282889	chrX	17282961	17282978		5	100	4.0	0.0	2.0	1.7	120	chrX	17282858	intron	CG5445 +	chrX	17282918	5` UTR	CG5445 +	chrX	17282978	intron	CG5445 +	chrX_5_17280001	chrX_17280001	S2R+
1011	chrX	19060396	19060432	chrX	19065205	19065241	Doc	4	4807	2.0	2.5	2.2	1.2	4845	chrX	19060396	intron	CG14190 +	chrX	19062818	intron	CG14190 +	chrX	19065241	intron	CG14190 +	chrX_4_19060001	chrX_19060001	S2R+
1012	chrX	19073690	19073698	chrX	19073802	19073810		4	111	1.5	4.0	2.8	1.1	120	chrX	19073690	intergenic	not near genes	chrX	19073750	intergenic	not near genes	chrX	19073810	intergenic	not near genes	chrX_4_19070001	chrX_19070001	S2R+
1013	chrX	19080305	19080344	chrX	19080434	19080474		8	130	1.5	1.0	1.2	3.6	169	chrX	19080305	intergenic	not near genes	chrX	19080390	intergenic	not near genes	chrX	19080474	intergenic	not near genes	chrX_8_19080001	chrX_19080001	S2R+
1014	chrX	19084067	19084122	chrX	19084212	19084267		5	145	0.0	0.5	0.2	4.2	200	chrX	19084067	intergenic	CR45503 +	chrX	19084167	intergenic	CR45503 +	chrX	19084267	intergenic	CR45503 +	chrX_5_19080001	chrX_19080001	S2R+
1015	chrX	19098752	19098781	chrX	19098855	19098884		6	102	0.5	1.5	1.0	3.0	132	chrX	19098752	intergenic	not near genes	chrX	19098818	intergenic	not near genes	chrX	19098884	intergenic	not near genes	chrX_6_19095001	chrX_19095001	S2R+
1016	chrX	19101154	19101204	chrX	19101290	19101344		6	139	3.0	0.0	1.5	2.4	190	chrX	19101154	intergenic	not near genes	chrX	19101249	intergenic	not near genes	chrX	19101344	intergenic	not near genes	chrX_6_19100001	chrX_19100001	S2R+
1017	chrX	19125657	19125694	chrX	19125766	19125802		12	108	6.5	4.0	5.2	1.9	145	chrX	19125657	intron	tgy -	chrX	19125730	intron	tgy -	chrX	19125802	intron	tgy -	chrX_12_19125001	chrX_19125001	S2R+
1018	chrX	19136537	19136560	chrX	19143482	19143505	412	7	6944	4.0	7.0	5.5	1.1	6968	chrX	19136537	intergenic	not near genes	chrX	19140021	intergenic	not near genes	chrX	19143505	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	S2R+
1019	chrX	19039338	19039382	chrX	19178852	19178898		5	139514	8.0	11.0	9.5	0.5	139560	chrX	19039338	intergenic	not near genes	chrX	19109118	intergenic	not near genes	chrX	19178898	intron	CG7556 -	chrX_5_19105001	chrX_19105001	S2R+
1020	chrX	19125195	19125213	chrX	19206051	19206074		4	80859	14.0	4.5	9.2	0.4	80879	chrX	19125195	3` UTR	tgy -	chrX	19165634	intron	RhoGAP18B -	chrX	19206074	exon	Ulp1 -	chrX_4_19165001	chrX_19165001	S2R+
1021	chrX	19249330	19249383	chrX	19249437	19249490		5	106	0.5	0.0	0.2	4.2	160	chrX	19249330	intron	Hs3st-B +	chrX	19249410	intron	Hs3st-B +	chrX	19249490	intron	Hs3st-B +	chrX_5_19245001	chrX_19245001	S2R+
1022	chrX	19460071	19460110	chrX	19460212	19460251		4	141	0.5	0.5	0.5	2.7	180	chrX	19460071	intron	kek5 +	chrX	19460161	intron	kek5 +	chrX	19460251	intron	kek5 +	chrX_4_19460001	chrX_19460001	S2R+
1023	chrX	19607052	19607105	chrX	19607164	19607199		9	109	2.0	0.0	1.0	4.5	147	chrX	19607052	intron	CG14207 +	chrX	19607126	intron	CG14207 +	chrX	19607199	intron	CG14207 +	chrX_9_19605001	chrX_19605001	S2R+
1024	chrX	19884100	19884114	chrX	19884186	19884210		4	96	2.0	1.0	1.5	1.6	110	chrX	19884100	intron	Hers +	chrX	19884155	intron	Hers +	chrX	19884210	intron	Hers +	chrX_4_19880001	chrX_19880001	S2R+
1025	chrX	19897364	19897415	chrX	19897465	19897517		10	102	3.0	3.0	3.0	2.5	153	chrX	19897364	intron	Hers +	chrX	19897440	intron	Hers +	chrX	19897517	intron	Hers +	chrX_10_19895001	chrX_19895001	S2R+
1026	chrX	20144827	20144868	chrX	20145022	20145063		4	195	0.5	1.0	0.8	2.2	236	chrX	20144827	intergenic	not near genes	chrX	20144945	intergenic	not near genes	chrX	20145063	intergenic	not near genes	chrX_4_20140001	chrX_20140001	S2R+
1027	chrX	20263400	20263430	chrX	20263515	20263541		5	113	2.5	1.0	1.8	1.8	141	chrX	20263400	intergenic	not near genes	chrX	20263470	intergenic	not near genes	chrX	20263541	intergenic	not near genes	chrX_5_20260001	chrX_20260001	S2R+
1028	chrX	20531738	20531748	chrX	20531862	20531872		5	124	0.0	0.5	0.2	4.2	134	chrX	20531738	intergenic	not near genes	chrX	20531805	intergenic	not near genes	chrX	20531872	intergenic	not near genes	chrX_5_20530001	chrX_20530001	S2R+
1029	chrX	20836703	20836750	chrX	20844329	20844377	roo	4	7626	0.0	0.0	0.0	4.0	7674	chrX	20836703	intron	shakB -	chrX	20840540	intron	shakB -	chrX	20844377	intron	shakB -	chrX_4_20840001	chrX_20840001	S2R+
1030	chrX	21054671	21054705	chrX	21060498	21060532		5	5826	2.5	3.0	2.8	1.3	5861	chrX	21054671	5` UTR	bves +	chrX	21057602	intron	bves +	chrX	21060532	5` UTR	bves +	chrX_5_21055001	chrX_21055001	S2R+