SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47457	47490	chr2L	52563	52596	jockey	16	5106	6.5	3.5	5.0	2.7	5139	chr2L	47457	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52596	intron	Cda5 -	chr2L_16_50001	chr2L_50001	D4-c1
12	chr2L	347885	347913	chr2L	355386	355414	blood	9	7501	3.5	4.5	4.0	1.8	7529	chr2L	347885	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355414	3` UTR	Plc21C +	chr2L_9_350001	chr2L_350001	D4-c1
19	chr2L	686916	686952	chr2L	695957	695993	roo	16	9041	4.0	2.5	3.2	3.8	9077	chr2L	686916	intron	ds -	chr2L	691454	intron	ds -	chr2L	695993	intron	ds -	chr2L_16_690001	chr2L_690001	D4-c1
21	chr2L	770466	770493	chr2L	772248	772275	Bari1	13	1782	5.5	8.5	7.0	1.6	1809	chr2L	770466	intergenic	not near genes	chr2L	771370	intergenic	not near genes	chr2L	772275	intergenic	CR44614 +	chr2L_13_770001	chr2L_770001	D4-c1
27	chr2L	976882	976910	chr2L	984519	984547	roo	17	7636	1.5	3.0	2.2	5.3	7665	chr2L	976882	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984547	intergenic	not near genes	chr2L_17_980001	chr2L_980001	D4-c1
30	chr2L	1220127	1220159	chr2L	1227594	1227626	blood	20	7466	7.5	4.0	5.8	2.9	7499	chr2L	1220127	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227626	intron	CG42329 +	chr2L_20_1220001	chr2L_1220001	D4-c1
32	chr2L	1301749	1301783	chr2L	1302289	1302323	gypsy	11	540	6.5	4.5	5.5	1.7	574	chr2L	1301749	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302323	intergenic	not near genes	chr2L_11_1300001	chr2L_1300001	D4-c1
41	chr2L	1570683	1570718	chr2L	1573556	1573590	F-element	16	2873	7.0	5.0	6.0	2.3	2907	chr2L	1570683	intron	haf +	chr2L	1572136	intron	haf +	chr2L	1573590	intron	haf +	chr2L_16_1570001	chr2L_1570001	D4-c1
47	chr2L	1678958	1679002	chr2L	1686442	1686468	blood	4	7470	0.0	5.0	2.5	1.1	7510	chr2L	1678958	intron	chinmo +	chr2L	1682713	intron	chinmo +	chr2L	1686468	intron	chinmo +	chr2L_4_1680001	chr2L_1680001	D4-c1
48	chr2L	1711353	1711387	chr2L	1711678	1711712	mdg3	13	324	6.5	7.5	7.0	1.6	359	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_13_1710001	chr2L_1710001	D4-c1
54	chr2L	2100377	2100408	chr2L	2109529	2109551	roo	15	9151	5.5	8.0	6.8	1.9	9174	chr2L	2100377	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_15_2100001	chr2L_2100001	D4-c1
55	chr2L	2112110	2112146	chr2L	2119773	2119809	opus	21	7659	6.0	7.5	6.8	2.7	7699	chr2L	2112110	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119809	intergenic	not near genes	chr2L_21_2115001	chr2L_2115001	D4-c1
60	chr2L	2294040	2294070	chr2L	2299246	2299276	copia	15	5205	6.0	6.5	6.2	2.1	5236	chr2L	2294040	intergenic	not near genes	chr2L	2296658	intergenic	not near genes	chr2L	2299276	intergenic	not near genes	chr2L_15_2295001	chr2L_2295001	D4-c1
66	chr2L	2565553	2565562	chr2L	2571627	2571635	297	8	6074	5.0	5.0	5.0	1.3	6082	chr2L	2565553	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571635	intron	Cyp309a2 -	chr2L_8_2565001	chr2L_2565001	D4-c1
72	chr2L	2661195	2661232	chr2L	2663034	2663071	I-element	16	1832	3.5	5.5	4.5	2.9	1876	chr2L	2661195	intergenic	not near genes	chr2L	2662133	intergenic	not near genes	chr2L	2663071	intergenic	not near genes	chr2L_16_2660001	chr2L_2660001	D4-c1
74	chr2L	2772609	2772621	chr2L	2779194	2779204	297	4	6584	6.5	8.0	7.2	0.5	6595	chr2L	2772609	3` UTR	Syt1 -	chr2L	2775906	intron	Syt1 -	chr2L	2779204	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	D4-c1
79	chr2L	3073033	3073065	chr2L	3078237	3078269	copia	18	5204	5.5	7.5	6.5	2.4	5236	chr2L	3073033	intron	toc -	chr2L	3075651	intron	toc -	chr2L	3078269	intron	toc -	chr2L_18_3075001	chr2L_3075001	D4-c1
86	chr2L	3202737	3202767	chr2L	3210167	3210197	mdg1	16	7430	4.0	4.0	4.0	3.2	7460	chr2L	3202737	intergenic	not near genes	chr2L	3206467	intergenic	not near genes	chr2L	3210197	intergenic	CR45336 +	chr2L_16_3205001	chr2L_3205001	D4-c1
88	chr2L	3251496	3251527	chr2L	3259062	3259093	springer	8	7566	3.0	7.0	5.0	1.3	7597	chr2L	3251496	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259093	intergenic	not near genes	chr2L_8_3255001	chr2L_3255001	D4-c1
92	chr2L	3388599	3388629	chr2L	3388841	3388871	pogo	8	242	5.5	3.0	4.2	1.5	272	chr2L	3388599	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388871	intergenic	CG42460 -,CR44791 +	chr2L_8_3385001	chr2L_3385001	D4-c1
100	chr2L	3649789	3649807	chr2L	3654992	3655010	copia	9	5203	6.5	5.5	6.0	1.3	5221	chr2L	3649789	intron	for -	chr2L	3652400	intron	for -	chr2L	3655010	intron	for -	chr2L_9_3650001	chr2L_3650001	D4-c1
109	chr2L	4661845	4661857	chr2L	4669426	4669438	opus	7	7581	5.0	10.0	7.5	0.8	7593	chr2L	4661845	intergenic	not near genes	chr2L	4665642	intergenic	not near genes	chr2L	4669438	intergenic	not near genes	chr2L_7_4665001	chr2L_4665001	D4-c1
115	chr2L	4918162	4918182	chr2L	4923236	4923256	jockey	4	5074	4.0	0.5	2.2	1.2	5094	chr2L	4918162	intron	hoe1 -	chr2L	4920709	intron	hoe1 -	chr2L	4923256	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	D4-c1
123	chr2L	5342769	5342804	chr2L	5345150	5345177	Doc	10	2380	4.0	4.0	4.0	2.0	2408	chr2L	5342769	intergenic	not near genes	chr2L	5343973	intergenic	not near genes	chr2L	5345177	intergenic	not near genes	chr2L_10_5340001	chr2L_5340001	D4-c1
129	chr2L	5827710	5827739	chr2L	5836719	5836748	roo	11	9008	6.5	5.5	6.0	1.6	9038	chr2L	5827710	intron	TrissinR +	chr2L	5832229	intron	TrissinR +	chr2L	5836748	intron	TrissinR +	chr2L_11_5830001	chr2L_5830001	D4-c1
147	chr2L	6279640	6279653	chr2L	6279720	6279733	INE-1	6	80	3.0	2.0	2.5	1.7	93	chr2L	6279640	intron	Ddr +	chr2L	6279686	intron	Ddr +	chr2L	6279733	intron	Ddr +	chr2L_6_6275001	chr2L_6275001	D4-c1
149	chr2L	6363148	6363175	chr2L	6366075	6366102	Burdock	18	2927	3.5	4.5	4.0	3.6	2954	chr2L	6363148	intergenic	not near genes	chr2L	6364625	intergenic	not near genes	chr2L	6366102	intergenic	not near genes	chr2L_18_6360001	chr2L_6360001	D4-c1
150	chr2L	6426853	6426885	chr2L	6445114	6445146	roo	20	18261	4.5	9.5	7.0	2.5	18293	chr2L	6426853	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445146	exon	CG9527 -	chr2L_20_6435001	chr2L_6435001	D4-c1
153	chr2L	6876778	6876809	chr2L	6882970	6883000	diver	8	6190	5.5	4.5	5.0	1.3	6222	chr2L	6876778	intron	Nlg2 +	chr2L	6879889	intron	Nlg2 +	chr2L	6883000	intron	Nlg2 +	chr2L_8_6875001	chr2L_6875001	D4-c1
166	chr2L	7343324	7343359	chr2L	7350441	7350476	roo	12	7117	4.0	6.5	5.2	1.9	7152	chr2L	7343324	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350476	intron	Wnt6 +	chr2L_12_7345001	chr2L_7345001	D4-c1
179	chr2L	7959040	7959069	chr2L	7960452	7960475	pogo	13	1411	7.5	0.5	4.0	2.6	1435	chr2L	7959040	intron	Snoo -	chr2L	7959758	intron	Snoo -	chr2L	7960475	intron	Snoo -	chr2L_13_7955001	chr2L_7955001	D4-c1
180	chr2L	7977092	7977109	chr2L	7984068	7984085	297	5	6976	6.0	9.5	7.8	0.6	6993	chr2L	7977092	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984085	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	D4-c1
181	chr2L	8013612	8013633	chr2L	8018817	8018838	copia	17	5205	6.5	0.0	3.2	4.0	5226	chr2L	8013612	intron	Tg +	chr2L	8016225	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_17_8015001	chr2L_8015001	D4-c1
182	chr2L	8018823	8018837	chr2L	8023608	8023622	Doc	6	4785	0.0	12.0	6.0	0.9	4799	chr2L	8018823	intron	Tg +	chr2L	8021222	intron	Tg +	chr2L	8023622	intron	Tg +	chr2L_6_8020001	chr2L_8020001	D4-c1
190	chr2L	8452425	8452448	chr2L	8461597	8461620	roo	12	9172	5.0	9.0	7.0	1.5	9195	chr2L	8452425	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461620	intron	fu12 -	chr2L_12_8455001	chr2L_8455001	D4-c1
196	chr2L	8594462	8594494	chr2L	8601517	8601549	297	11	7055	7.0	3.0	5.0	1.8	7087	chr2L	8594462	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598006	intron	Sema-1a +	chr2L	8601549	intron	Sema-1a +	chr2L_11_8595001	chr2L_8595001	D4-c1
199	chr2L	8723115	8723148	chr2L	8731493	8731526	Tirant	18	8378	5.5	5.5	5.5	2.8	8411	chr2L	8723115	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731526	intron	raw -	chr2L_18_8725001	chr2L_8725001	D4-c1
209	chr2L	9000280	9000312	chr2L	9007791	9007823	roo	14	7511	7.5	1.0	4.2	2.7	7543	chr2L	9000280	intergenic	Try29F +	chr2L	9004052	intergenic	not near genes	chr2L	9007823	intergenic	not near genes	chr2L_14_9000001	chr2L_9000001	D4-c1
214	chr2L	9217969	9217999	chr2L	9222757	9222787	Doc	16	4787	6.5	6.5	6.5	2.1	4818	chr2L	9217969	intron	tai +	chr2L	9220378	intron	tai +	chr2L	9222787	intron	tai +	chr2L_16_9220001	chr2L_9220001	D4-c1
233	chr2L	9973729	9973759	chr2L	9980843	9980879	HMS-Beagle	13	7119	4.0	5.5	4.8	2.2	7150	chr2L	9973729	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980879	intergenic	not near genes	chr2L_13_9975001	chr2L_9975001	D4-c1
237	chr2L	10156324	10156347	chr2L	10163795	10163818	blood	11	7471	5.5	5.0	5.2	1.8	7494	chr2L	10156324	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160071	intron	CG44153 -	chr2L	10163818	intron	CG44153 -	chr2L_11_10160001	chr2L_10160001	D4-c1
247	chr2L	10592840	10592871	chr2L	10600503	10600505	opus	11	7660	3.0	2.5	2.8	2.9	7665	chr2L	10592840	intron	Trim9 +	chr2L	10596672	intron	Trim9 +	chr2L	10600505	intron	Trim9 +	chr2L_11_10595001	chr2L_10595001	D4-c1
253	chr2L	10862840	10862853	chr2L	10864455	10864468	Rt1c	9	1615	2.5	6.5	4.5	1.6	1628	chr2L	10862840	3` UTR	CR43807 -	chr2L	10863654	intron	CR43807 -	chr2L	10864468	3` UTR	CR43807 -	chr2L_9_10860001	chr2L_10860001	D4-c1
254	chr2L	10862854	10862876	chr2L	10864454	10864491	Rt1c	11	1612	2.0	6.5	4.2	2.1	1637	chr2L	10862854	3` UTR	CR43807 -	chr2L	10863672	intron	CR43807 -	chr2L	10864491	3` UTR	CR43807 -	chr2L_11_10860001	chr2L_10860001	D4-c1
257	chr2L	10946950	10946973	chr2L	10956166	10956189	roo	18	9216	8.0	8.5	8.2	2.0	9239	chr2L	10946950	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956189	intron	dpr2 -	chr2L_18_10950001	chr2L_10950001	D4-c1
265	chr2L	11315267	11315269	chr2L	11317672	11317674	G2	4	2405	4.5	2.5	3.5	0.9	2407	chr2L	11315267	intergenic	not near genes	chr2L	11316470	intergenic	not near genes	chr2L	11317674	intergenic	not near genes	chr2L_4_11315001	chr2L_11315001	D4-c1
274	chr2L	11540583	11540616	chr2L	11547986	11548019	Tabor	10	7403	7.0	5.5	6.2	1.4	7436	chr2L	11540583	intergenic	not near genes	chr2L	11544301	intergenic	not near genes	chr2L	11548019	intergenic	not near genes	chr2L_10_11540001	chr2L_11540001	D4-c1
275	chr2L	11563636	11563668	chr2L	11568841	11568873	copia	15	5204	3.5	4.0	3.8	3.1	5237	chr2L	11563636	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568873	intergenic	not near genes	chr2L_15_11565001	chr2L_11565001	D4-c1
276	chr2L	11614060	11614083	chr2L	11615547	11615579	hopper2	4	1492	3.5	1.0	2.2	1.2	1519	chr2L	11614060	intron	kek2 +	chr2L	11614820	intron	kek2 +	chr2L	11615579	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	D4-c1
280	chr2L	11713505	11713538	chr2L	11720974	11721007	blood	22	7469	6.5	2.5	4.5	4.0	7502	chr2L	11713505	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721007	intergenic	CR44143 +	chr2L_22_11715001	chr2L_11715001	D4-c1
291	chr2L	12067353	12067361	chr2L	12074397	12074405	297	7	7044	4.0	2.0	3.0	1.8	7052	chr2L	12067353	intergenic	not near genes	chr2L	12070879	intergenic	not near genes	chr2L	12074405	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	D4-c1
305	chr2L	12558317	12558349	chr2L	12565447	12565479	HMS-Beagle	11	7130	3.0	3.0	3.0	2.8	7162	chr2L	12558317	intergenic	not near genes	chr2L	12561898	intergenic	not near genes	chr2L	12565479	intergenic	not near genes	chr2L_11_12560001	chr2L_12560001	D4-c1
307	chr2L	12728921	12728943	chr2L	12729161	12729183	pogo	10	240	7.5	6.5	7.0	1.2	262	chr2L	12728921	intron	MRP +	chr2L	12729052	intron	MRP +	chr2L	12729183	intron	MRP +	chr2L_10_12725001	chr2L_12725001	D4-c1
308	chr2L	12731053	12731088	chr2L	12735821	12735856	F-element	14	4768	3.5	7.5	5.5	2.2	4803	chr2L	12731053	intron	MRP +	chr2L	12733454	intron	MRP +	chr2L	12735856	intron	MRP +	chr2L_14_12730001	chr2L_12730001	D4-c1
309	chr2L	12739172	12739205	chr2L	12743954	12743987	Doc	15	4782	4.0	4.0	4.0	3.0	4815	chr2L	12739172	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743987	exon	MRP +	chr2L_15_12740001	chr2L_12740001	D4-c1
311	chr2L	12763863	12763873	chr2L	12764064	12764074	BS	4	201	0.0	2.5	1.2	1.8	211	chr2L	12763863	intergenic	not near genes	chr2L	12763968	intergenic	not near genes	chr2L	12764074	intergenic	not near genes	chr2L_4_12760001	chr2L_12760001	D4-c1
313	chr2L	12781798	12781814	chr2L	12789249	12789265	Quasimodo	11	7450	8.0	7.5	7.8	1.2	7467	chr2L	12781798	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789265	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	D4-c1
314	chr2L	12791604	12791618	chr2L	12795280	12795283	F-element	5	3674	5.0	2.5	3.8	1.0	3679	chr2L	12791604	intergenic	not near genes	chr2L	12793444	intergenic	not near genes	chr2L	12795283	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	D4-c1
318	chr2L	12861704	12861730	chr2L	12863172	12863196	hobo	15	1467	1.0	4.5	2.8	3.9	1492	chr2L	12861704	intergenic	not near genes	chr2L	12862450	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_15_12860001	chr2L_12860001	D4-c1
320	chr2L	12894021	12894054	chr2L	12895489	12895522	hobo	25	1466	8.0	7.0	7.5	2.9	1501	chr2L	12894021	intergenic	not near genes	chr2L	12894772	intergenic	not near genes	chr2L	12895522	intergenic	not near genes	chr2L_25_12890001	chr2L_12890001	D4-c1
322	chr2L	12933848	12933880	chr2L	12941316	12941348	blood	17	7468	6.5	7.0	6.8	2.2	7500	chr2L	12933848	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941348	intergenic	not near genes	chr2L_17_12935001	chr2L_12935001	D4-c1
331	chr2L	13405645	13405677	chr2L	13410443	13410475	Doc	14	4798	8.0	4.0	6.0	2.0	4830	chr2L	13405645	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410475	intron	CG7110 +	chr2L_14_13405001	chr2L_13405001	D4-c1
333	chr2L	13449461	13449495	chr2L	13456898	13456932	Quasimodo	14	7436	6.5	3.0	4.8	2.4	7471	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_14_13450001	chr2L_13450001	D4-c1
334	chr2L	13481448	13481473	chr2L	13482056	13482081	jockey	12	608	8.5	7.5	8.0	1.3	633	chr2L	13481448	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_12_13480001	chr2L_13480001	D4-c1
338	chr2L	13761803	13761835	chr2L	13762915	13762947	Doc	11	1112	5.5	7.5	6.5	1.5	1144	chr2L	13761803	intron	TM9SF4 +	chr2L	13762375	intron	TM9SF4 +	chr2L	13762947	intron	TM9SF4 +	chr2L_11_13760001	chr2L_13760001	D4-c1
340	chr2L	13853082	13853113	chr2L	13862233	13862264	roo	20	9151	7.0	4.5	5.8	2.9	9182	chr2L	13853082	intron	CenG1A +	chr2L	13857673	intron	CenG1A +	chr2L	13862264	intron	CenG1A +	chr2L_20_13855001	chr2L_13855001	D4-c1
350	chr2L	14642569	14642601	chr2L	14651733	14651765	roo	10	9164	3.5	3.5	3.5	2.2	9196	chr2L	14642569	intron	osp -	chr2L	14647167	intron	osp -	chr2L	14651765	intron	osp -	chr2L_10_14645001	chr2L_14645001	D4-c1
353	chr2L	14803876	14803913	chr2L	14809080	14809117	copia	24	5204	5.0	4.5	4.8	4.1	5241	chr2L	14803876	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809117	intergenic	not near genes	chr2L_24_14805001	chr2L_14805001	D4-c1
357	chr2L	14889950	14889985	chr2L	14890376	14890411	jockey	5	426	5.5	4.0	4.8	0.9	461	chr2L	14889950	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890411	intergenic	not near genes	chr2L_5_14890001	chr2L_14890001	D4-c1
370	chr2L	15446049	15446084	chr2L	15453519	15453554	blood	16	7469	3.5	5.5	4.5	2.9	7505	chr2L	15446049	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453554	intergenic	not near genes	chr2L_16_15445001	chr2L_15445001	D4-c1
374	chr2L	15586408	15586441	chr2L	15593461	15593494	297	15	7053	3.0	1.5	2.2	4.7	7086	chr2L	15586408	intergenic	not near genes	chr2L	15589951	intergenic	not near genes	chr2L	15593494	intergenic	not near genes	chr2L_15_15585001	chr2L_15585001	D4-c1
376	chr2L	15773571	15773585	chr2L	15773653	15773667	INE-1	8	82	2.0	0.5	1.2	3.6	96	chr2L	15773571	intergenic	CG31826 -	chr2L	15773619	intergenic	not near genes	chr2L	15773667	intergenic	not near genes	chr2L_8_15770001	chr2L_15770001	D4-c1
381	chr2L	15956021	15956055	chr2L	15957489	15957523	hobo	21	1468	7.5	5.0	6.2	2.9	1502	chr2L	15956021	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957523	intron	beat-Ib -	chr2L_21_15955001	chr2L_15955001	D4-c1
388	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	34	145889	31.0	17.0	24.0	1.4	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_34_16140001	chr2L_16140001	D4-c1
389	chr2L	16141162	16141194	chr2L	16146370	16146402	copia	11	5208	2.5	6.0	4.2	2.1	5240	chr2L	16141162	intergenic	not near genes	chr2L	16143782	intergenic	not near genes	chr2L	16146402	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	D4-c1
390	chr2L	16153733	16153760	chr2L	16160788	16160815	297	13	7055	6.5	8.5	7.5	1.5	7082	chr2L	16153733	intergenic	not near genes	chr2L	16157274	intergenic	not near genes	chr2L	16160815	intergenic	not near genes	chr2L_13_16155001	chr2L_16155001	D4-c1
393	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	16	145889	31.0	17.0	24.0	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_16_16140001	chr2L_16140001	D4-c1
396	chr2L	16280253	16280287	chr2L	16281425	16281459	1360	24	1172	1.5	6.0	3.8	5.0	1206	chr2L	16280253	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281459	intron	crp -	chr2L_24_16280001	chr2L_16280001	D4-c1
409	chr2L	16852435	16852454	chr2L	16858605	16858629	Doc3-element	12	6173	17.5	9.5	13.5	0.8	6194	chr2L	16852435	intergenic	CG31810 -	chr2L	16855532	intron	CG31809 -	chr2L	16858629	5` UTR	CG31809 -	chr2L_12_16855001	chr2L_16855001	D4-c1
410	chr2L	16852793	16852805	chr2L	16859936	16859948	Doc4-element	8	7143	7.0	5.5	6.2	1.1	7155	chr2L	16852793	intergenic	CG31810 -	chr2L	16856370	intron	CG31809 -	chr2L	16859948	intergenic	CG6012 -	chr2L_8_16855001	chr2L_16855001	D4-c1
414	chr2L	16958104	16958135	chr2L	16962893	16962924	Doc	16	4789	2.0	7.0	4.5	2.9	4820	chr2L	16958104	intergenic	not near genes	chr2L	16960514	intergenic	not near genes	chr2L	16962924	intergenic	not near genes	chr2L_16_16960001	chr2L_16960001	D4-c1
434	chr2L	17167567	17167596	chr2L	17167809	17167838	pogo	15	242	4.5	4.5	4.5	2.7	271	chr2L	17167567	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167702	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167838	intron,intron	CG34106 +,beat-IIIa +	chr2L_15_17165001	chr2L_17165001	D4-c1
437	chr2L	17199158	17199189	chr2L	17200626	17200657	hobo	9	1468	3.5	4.5	4.0	1.8	1499	chr2L	17199158	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200657	intron	beat-IIIc -	chr2L_9_17195001	chr2L_17195001	D4-c1
440	chr2L	17273191	17273223	chr2L	17277975	17278007	F-element	15	4783	3.5	4.5	4.0	3.0	4816	chr2L	17273191	intergenic	not near genes	chr2L	17275599	intergenic	not near genes	chr2L	17278007	intergenic	not near genes	chr2L_15_17275001	chr2L_17275001	D4-c1
456	chr2L	17727871	17727882	chr2L	17729339	17729350	hobo	6	1467	3.5	8.5	6.0	0.9	1479	chr2L	17727871	intron	CadN -	chr2L	17728610	intron	CadN -	chr2L	17729350	intron	CadN -	chr2L_6_17725001	chr2L_17725001	D4-c1
459	chr2L	17819920	17819956	chr2L	17825124	17825160	copia	16	5204	5.5	6.0	5.8	2.4	5240	chr2L	17819920	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825160	intron	CadN2 -	chr2L_16_17820001	chr2L_17820001	D4-c1
461	chr2L	17911962	17911990	chr2L	17914140	17914169	pogo	16	2179	6.5	6.0	6.2	2.2	2207	chr2L	17911962	intergenic	not near genes	chr2L	17913066	intergenic	not near genes	chr2L	17914169	intergenic	CG43271 -	chr2L_16_17910001	chr2L_17910001	D4-c1
462	chr2L	17951947	17951980	chr2L	17953415	17953448	hobo	17	1468	4.5	6.0	5.2	2.7	1501	chr2L	17951947	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953448	intergenic	not near genes	chr2L_17_17950001	chr2L_17950001	D4-c1
464	chr2L	18051874	18051906	chr2L	18061022	18061054	roo	12	9148	4.0	6.0	5.0	2.0	9180	chr2L	18051874	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_12_18055001	chr2L_18055001	D4-c1
471	chr2L	18408022	18408052	chr2L	18412807	18412837	Doc	14	4785	5.5	0.0	2.8	3.7	4815	chr2L	18408022	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412837	intergenic	not near genes	chr2L_14_18410001	chr2L_18410001	D4-c1
490	chr2L	19147367	19147402	chr2L	19154403	19154438	297	13	7036	4.5	4.0	4.2	2.5	7071	chr2L	19147367	intron	brat +	chr2L	19150902	intron	brat +	chr2L	19154438	intron	brat +	chr2L_13_19150001	chr2L_19150001	D4-c1
495	chr2L	19345013	19345050	chr2L	19357221	19357260	blood	15	12210	5.0	5.5	5.2	2.4	12247	chr2L	19345013	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357260	intron	dnt -	chr2L_15_19350001	chr2L_19350001	D4-c1
508	chr2L	19620088	19620129	chr2L	19621078	19621119	jockey	17	990	6.5	4.5	5.5	2.6	1031	chr2L	19620088	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621119	intron	Lar +	chr2L_17_19620001	chr2L_19620001	D4-c1
509	chr2L	19652567	19652604	chr2L	19674004	19674041	opus	17	21437	2.0	4.0	3.0	4.2	21474	chr2L	19652567	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674041	intron	Lar +	chr2L_17_19660001	chr2L_19660001	D4-c1
511	chr2L	19703536	19703568	chr2L	19712673	19712705	roo	16	9137	4.0	7.5	5.8	2.4	9169	chr2L	19703536	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_16_19705001	chr2L_19705001	D4-c1
512	chr2L	19737357	19737388	chr2L	19740827	19740858	1360	15	3466	15.0	15.5	15.2	0.9	3501	chr2L	19737357	intergenic	Nf-YB +	chr2L	19739108	intergenic	not near genes	chr2L	19740858	intergenic	not near genes	chr2L_15_19735001	chr2L_19735001	D4-c1
514	chr2L	19762814	19762839	chr2L	19763057	19763082	pogo	11	243	3.5	5.5	4.5	2.0	268	chr2L	19762814	5` UTR	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763082	intron	fbp -	chr2L_11_19760001	chr2L_19760001	D4-c1
519	chr2L	20005875	20005903	chr2L	20010952	20010980	flea	15	5077	9.0	7.5	8.2	1.6	5105	chr2L	20005875	intron	CG43861 -	chr2L	20008428	intron	CG43861 -	chr2L	20010980	intron	CG43861 -	chr2L_15_20005001	chr2L_20005001	D4-c1
523	chr2L	20272111	20272143	chr2L	20282823	20282855	copia	13	10712	8.0	9.5	8.8	1.3	10744	chr2L	20272111	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_13_20275001	chr2L_20275001	D4-c1
525	chr2L	20303161	20303188	chr2L	20310630	20310657	blood	6	7469	2.5	2.0	2.2	1.9	7496	chr2L	20303161	intergenic	not near genes	chr2L	20306909	intergenic	not near genes	chr2L	20310657	intergenic	not near genes	chr2L_6_20305001	chr2L_20305001	D4-c1
527	chr2L	20372227	20372243	chr2L	20372469	20372485	pogo	6	242	1.5	5.5	3.5	1.3	258	chr2L	20372227	intergenic	Ugt37a1 -	chr2L	20372356	intergenic	Ugt37a1 -	chr2L	20372485	exon	Ugt37a1 -	chr2L_6_20370001	chr2L_20370001	D4-c1
530	chr2L	20568659	20568687	chr2L	20569050	20569078	X-element	13	391	0.5	4.5	2.5	3.7	419	chr2L	20568659	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569078	intron	CR45347 +	chr2L_13_20565001	chr2L_20565001	D4-c1
531	chr2L	20576221	20576252	chr2L	20583690	20583721	blood	13	7469	2.0	4.0	3.0	3.2	7500	chr2L	20576221	intergenic	not near genes	chr2L	20579971	intergenic	not near genes	chr2L	20583721	3` UTR	CR44909 -	chr2L_13_20575001	chr2L_20575001	D4-c1
534	chr2L	20639510	20639530	chr2L	20639787	20639807	INE-1	8	276	15.5	12.5	14.0	0.5	297	chr2L	20639510	intergenic	not near genes	chr2L	20639658	intergenic	CG31680 +	chr2L	20639807	intergenic	CG31680 +	chr2L_8_20635001	chr2L_20635001	D4-c1
543	chr2L	20835810	20835841	chr2L	20836528	20836559	Quasimodo	7	718	9.0	14.0	11.5	0.6	749	chr2L	20835810	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836559	intergenic	Spn38F -	chr2L_7_20835001	chr2L_20835001	D4-c1
546	chr2L	20891535	20891545	chr2L	20896637	20896647	jockey	4	5102	3.0	4.5	3.8	0.8	5112	chr2L	20891535	intron,intron	CG43739 -,sky -	chr2L	20894091	intron,intron	CG43739 -,sky -	chr2L	20896647	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	D4-c1
551	chr2L	20976640	20976679	chr2L	20981456	20981495	X-element	14	4816	3.5	6.0	4.8	2.4	4855	chr2L	20976640	intron	CG42238 -	chr2L	20979068	intron	CG42238 -	chr2L	20981495	intron	CG42238 -	chr2L_14_20975001	chr2L_20975001	D4-c1
554	chr2L	21020271	21020310	chr2L	21023949	21023988	NOF	16	3678	4.5	5.5	5.0	2.7	3717	chr2L	21020271	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023988	intron	CG42238 -	chr2L_16_21020001	chr2L_21020001	D4-c1
555	chr2L	21041135	21041167	chr2L	21049397	21049429	Tirant	15	8262	4.5	3.5	4.0	3.0	8294	chr2L	21041135	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049429	intron	CG42238 -	chr2L_15_21045001	chr2L_21045001	D4-c1
560	chr2L	21347555	21347579	chr2L	21355028	21355048	blood	6	7472	4.0	2.5	3.2	1.4	7493	chr2L	21347555	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355048	intron	Tsp39D +	chr2L_6_21350001	chr2L_21350001	D4-c1
563	chr2L	21597026	21597059	chr2L	21604771	21604803	roo	13	7744	3.0	3.5	3.2	3.1	7777	chr2L	21597026	intergenic	not near genes	chr2L	21600914	intergenic	not near genes	chr2L	21604803	intergenic	not near genes	chr2L_13_21600001	chr2L_21600001	D4-c1
565	chr2L	21691828	21691856	chr2L	21698299	21698327	Burdock	7	6471	2.5	0.5	1.5	2.8	6499	chr2L	21691828	intron	CG31619 +	chr2L	21695078	intron	CG31619 +	chr2L	21698327	intron	CG31619 +	chr2L_7_21695001	chr2L_21695001	D4-c1
573	chr2L	21981683	21981714	chr2L	21990849	21990880	roo	18	9164	6.5	7.0	6.8	2.3	9197	chr2L	21981683	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_18_21985001	chr2L_21985001	D4-c1
581	chr2L	22258618	22258648	chr2L	22260743	22260773	G6	11	2125	5.5	8.0	6.8	1.4	2155	chr2L	22258618	intergenic	Tif-IA +	chr2L	22259696	intergenic	not near genes	chr2L	22260773	intergenic	not near genes	chr2L_11_22255001	chr2L_22255001	D4-c1
583	chr2L	22581968	22582002	chr2L	22583758	22583792	S-element	10	1790	1.5	4.5	3.0	2.5	1824	chr2L	22581968	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583792	intron	CG17494 +	chr2L_10_22580001	chr2L_22580001	D4-c1
585	chr2L	22679801	22679821	chr2L	22684574	22684594	F-element	9	4773	4.5	6.0	5.2	1.5	4793	chr2L	22679801	intron	CG40006 -	chr2L	22682198	intron	CG40006 -	chr2L	22684594	intron	CG40006 -	chr2L_9_22680001	chr2L_22680001	D4-c1
587	chr2L	22776418	22776451	chr2L	22778208	22778241	S-element	8	1790	3.0	4.0	3.5	1.8	1823	chr2L	22776418	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_8_22775001	chr2L_22775001	D4-c1
589	chr2L	23006692	23006710	chr2L	23007000	23007018	Osvaldo	10	308	5.5	6.5	6.0	1.4	326	chr2L	23006692	intron	Cht3 -	chr2L	23006855	intron	Cht3 -	chr2L	23007018	intron	Cht3 -	chr2L_10_23005001	chr2L_23005001	D4-c1
592	chr2R	529322	529357	chr2R	537948	537983	Max-element	11	8626	3.0	3.0	3.0	2.8	8661	chr2R	529322	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537983	intron	CG40378 +	chr2R_11_530001	chr2R_530001	D4-c1
593	chr2R	552750	552788	chr2R	553969	554007	1360	18	1215	2.5	6.0	4.2	3.5	1257	chr2R	552750	intron	CG40378 +	chr2R	553378	intron	CG40378 +	chr2R	554007	intron	CG40378 +	chr2R_18_550001	chr2R_550001	D4-c1
595	chr2R	1082367	1082385	chr2R	1087131	1087162	Doc	19	4775	9.5	7.5	8.5	2.0	4795	chr2R	1082367	intron	rl +	chr2R	1084764	intron	rl +	chr2R	1087162	intron	rl +	chr2R_19_1080001	chr2R_1080001	D4-c1
602	chr2R	2498984	2499016	chr2R	2508132	2508164	roo	17	9147	6.5	4.5	5.5	2.6	9180	chr2R	2498984	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508164	intron	MFS17 -	chr2R_17_2500001	chr2R_2500001	D4-c1
604	chr2R	2591548	2591554	chr2R	2594225	2594231	roo	6	2677	26.0	20.0	23.0	0.2	2683	chr2R	2591548	intergenic	not near genes	chr2R	2592890	intergenic	not near genes	chr2R	2594231	intergenic	not near genes	chr2R_6_2590001	chr2R_2590001	D4-c1
605	chr2R	2688953	2688962	chr2R	4570972	4570974	aurora-element	4	1882017	19.5	4.0	11.8	0.3	1882021	chr2R	2688953	intergenic	not near genes	chr2R	3629964	intergenic	not near genes	chr2R	4570974	intergenic	not near genes	chr2R_4_3625001	chr2R_3625001	D4-c1
609	chr2R	3144093	3144108	chr2R	3393372	3393387	Doc	10	249279	16.5	6.5	11.5	0.8	249294	chr2R	3144093	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393387	intergenic	not near genes	chr2R_10_3265001	chr2R_3265001	D4-c1
615	chr2R	4622952	4622987	chr2R	4624112	4624147	1360	9	1159	6.0	1.5	3.8	1.9	1195	chr2R	4622952	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_9_4620001	chr2R_4620001	D4-c1
619	chr2R	4838869	4838888	chr2R	4840393	4840412	transib2	9	1524	9.5	6.5	8.0	1.0	1543	chr2R	4838869	intergenic	not near genes	chr2R	4839640	intergenic	not near genes	chr2R	4840412	intergenic	not near genes	chr2R_9_4835001	chr2R_4835001	D4-c1
633	chr2R	5417993	5418027	chr2R	5420626	5420660	Burdock	11	2633	3.0	7.5	5.2	1.8	2667	chr2R	5417993	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420660	intron	laccase2 +	chr2R_11_5415001	chr2R_5415001	D4-c1
638	chr2R	5543198	5543223	chr2R	5547283	5547308	invader1	7	4085	0.0	7.5	3.8	1.5	4110	chr2R	5543198	intron	CG30438 +	chr2R	5545253	intron	CG30438 +	chr2R	5547308	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	D4-c1
647	chr2R	5869273	5869308	chr2R	5874350	5874385	flea	18	5077	5.5	8.0	6.8	2.3	5112	chr2R	5869273	intergenic	not near genes	chr2R	5871829	intergenic	not near genes	chr2R	5874385	intergenic	not near genes	chr2R_18_5870001	chr2R_5870001	D4-c1
650	chr2R	5902157	5902180	chr2R	5909717	5909740	17.6	9	7560	5.0	2.5	3.8	1.9	7583	chr2R	5902157	intron	CG43366 +	chr2R	5905948	intron	CG43366 +	chr2R	5909740	intron	CG43366 +	chr2R_9_5905001	chr2R_5905001	D4-c1
655	chr2R	6096714	6096738	chr2R	6101913	6101937	BS	20	5198	13.0	5.5	9.2	2.0	5223	chr2R	6096714	intron	EcR -	chr2R	6099326	intron	EcR -	chr2R	6101937	intron	EcR -	chr2R_20_6095001	chr2R_6095001	D4-c1
656	chr2R	6096739	6096751	chr2R	6101909	6101929	BS	8	5191	8.5	4.5	6.5	1.1	5190	chr2R	6096739	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101929	intron	EcR -	chr2R_8_6095001	chr2R_6095001	D4-c1
662	chr2R	6494529	6494555	chr2R	6499292	6499318	F-element	4	4763	6.0	1.0	3.5	0.9	4789	chr2R	6494529	intergenic	not near genes	chr2R	6496924	intergenic	not near genes	chr2R	6499318	intergenic	not near genes	chr2R_4_6495001	chr2R_6495001	D4-c1
668	chr2R	6579772	6579803	chr2R	6584859	6584890	flea	12	5087	3.0	8.0	5.5	1.8	5118	chr2R	6579772	intron	jing +	chr2R	6582331	intron	jing +	chr2R	6584890	intron	jing +	chr2R_12_6580001	chr2R_6580001	D4-c1
672	chr2R	6952165	6952185	chr2R	6959746	6959766	opus	8	7581	3.0	2.5	2.8	2.1	7601	chr2R	6952165	intron,intron	mim -,CheB42c -	chr2R	6955966	intron,intron	mim -,CheB42c -	chr2R	6959766	intron,intron	mim -,CheB42c -	chr2R_8_6955001	chr2R_6955001	D4-c1
676	chr2R	7139944	7139956	chr2R	7141437	7141449	hopper2	11	1493	3.5	14.5	9.0	1.1	1505	chr2R	7139944	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141449	intergenic	not near genes	chr2R_11_7140001	chr2R_7140001	D4-c1
679	chr2R	7196568	7196601	chr2R	7201344	7201377	F-element	10	4776	4.0	3.5	3.8	2.1	4809	chr2R	7196568	intron	pk +	chr2R	7198972	intron	pk +	chr2R	7201377	intron	pk +	chr2R_10_7195001	chr2R_7195001	D4-c1
680	chr2R	7235818	7235833	chr2R	7240911	7240926	jockey	7	5093	4.5	6.5	5.5	1.1	5108	chr2R	7235818	intergenic	not near genes	chr2R	7238372	intergenic	not near genes	chr2R	7240926	intergenic	not near genes	chr2R_7_7235001	chr2R_7235001	D4-c1
681	chr2R	7235837	7235850	chr2R	7240909	7240942	jockey	15	5091	2.0	6.5	4.2	2.9	5105	chr2R	7235837	intergenic	not near genes	chr2R	7238390	intergenic	not near genes	chr2R	7240942	intergenic	not near genes	chr2R_15_7235001	chr2R_7235001	D4-c1
685	chr2R	7434899	7434914	chr2R	7439201	7439216	Juan	10	4302	3.0	8.0	5.5	1.5	4317	chr2R	7434899	intergenic	so +	chr2R	7437058	intergenic	not near genes	chr2R	7439216	intergenic	not near genes	chr2R_10_7435001	chr2R_7435001	D4-c1
686	chr2R	7608406	7608434	chr2R	7613610	7613638	I-element	11	5204	3.5	0.0	1.8	3.9	5232	chr2R	7608406	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613638	intron	CG1358 -	chr2R_11_7610001	chr2R_7610001	D4-c1
693	chr2R	7815669	7815704	chr2R	7822139	7822174	Burdock	19	6470	4.5	6.0	5.2	3.1	6505	chr2R	7815669	intergenic	CG1882 +	chr2R	7818922	intergenic	not near genes	chr2R	7822174	3` UTR	cathD -	chr2R_19_7815001	chr2R_7815001	D4-c1
695	chr2R	7869187	7869215	chr2R	7873974	7874002	Doc	17	4787	4.5	5.5	5.0	2.8	4815	chr2R	7869187	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_17_7870001	chr2R_7870001	D4-c1
708	chr2R	8330860	8330888	chr2R	8331347	8331375	roo	13	487	7.0	4.0	5.5	2.0	515	chr2R	8330860	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331375	intron	pdm3 +	chr2R_13_8330001	chr2R_8330001	D4-c1
710	chr2R	8398213	8398218	chr2R	8402990	8403000	Doc	5	4781	7.5	7.5	7.5	0.6	4787	chr2R	8398213	intron	CG2121 -	chr2R	8400606	intron	CG2121 -	chr2R	8403000	intron	CG2121 -	chr2R_5_8400001	chr2R_8400001	D4-c1
711	chr2R	8398228	8398244	chr2R	8402988	8403026	Doc	16	4776	7.0	7.0	7.0	2.0	4798	chr2R	8398228	intron	CG2121 -	chr2R	8400627	intron	CG2121 -	chr2R	8403026	intron	CG2121 -	chr2R_16_8400001	chr2R_8400001	D4-c1
716	chr2R	8722763	8722795	chr2R	8723005	8723037	pogo	10	242	6.0	10.0	8.0	1.1	274	chr2R	8722763	intron	CG14767 -	chr2R	8722900	intron	CG14767 -	chr2R	8723037	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	D4-c1
717	chr2R	8777933	8777946	chr2R	8784138	8784151	diver	5	6205	2.0	6.5	4.2	1.0	6218	chr2R	8777933	intergenic	not near genes	chr2R	8781042	intergenic	not near genes	chr2R	8784151	intergenic	not near genes	chr2R_5_8780001	chr2R_8780001	D4-c1
721	chr2R	9151302	9151331	chr2R	9157773	9157802	Burdock	15	6471	5.5	3.5	4.5	2.7	6500	chr2R	9151302	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157802	intergenic	CG8008 -	chr2R_15_9150001	chr2R_9150001	D4-c1
723	chr2R	9212690	9212725	chr2R	9213177	9213212	roo	16	487	8.0	7.0	7.5	1.9	522	chr2R	9212690	intergenic	CR45309 +	chr2R	9212951	intergenic	CR45309 +	chr2R	9213212	5` UTR	CR45309 +	chr2R_16_9210001	chr2R_9210001	D4-c1
729	chr2R	9480075	9480110	chr2R	9490607	9490642	roo	11	10532	3.0	9.0	6.0	1.6	10567	chr2R	9480075	intergenic	not near genes	chr2R	9485358	intergenic	not near genes	chr2R	9490642	intergenic	not near genes	chr2R_11_9485001	chr2R_9485001	D4-c1
740	chr2R	9726619	9726642	chr2R	9734171	9734194	17.6	7	7551	2.0	3.0	2.5	2.0	7575	chr2R	9726619	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734194	intron	sqa -	chr2R_7_9730001	chr2R_9730001	D4-c1
742	chr2R	9871047	9871074	chr2R	9871533	9871561	roo	9	487	2.5	8.0	5.2	1.5	514	chr2R	9871047	intron	cbx -	chr2R	9871304	intron	cbx -	chr2R	9871561	intron,5` UTR	cbx -,CG18446 +	chr2R_9_9870001	chr2R_9870001	D4-c1
743	chr2R	9945434	9945470	chr2R	9945631	9945667	BS	12	197	4.5	7.0	5.8	1.8	233	chr2R	9945434	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945667	intron	Mef2 -	chr2R_12_9945001	chr2R_9945001	D4-c1
746	chr2R	10005845	10005875	chr2R	10007011	10007041	1360	20	1164	11.0	5.0	8.0	2.2	1196	chr2R	10005845	intron	Pka-R2 -	chr2R	10006443	intron	Pka-R2 -	chr2R	10007041	intron	Pka-R2 -	chr2R_20_10005001	chr2R_10005001	D4-c1
755	chr2R	10176876	10176912	chr2R	10186044	10186080	roo	9	9168	4.0	2.5	3.2	2.1	9204	chr2R	10176876	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186080	intron	KCNQ -	chr2R_9_10180001	chr2R_10180001	D4-c1
771	chr2R	10585574	10585591	chr2R	10594158	10594175	Tirant	10	8584	4.5	8.5	6.5	1.3	8601	chr2R	10585574	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594175	intron	psq +	chr2R_10_10585001	chr2R_10585001	D4-c1
772	chr2R	10622349	10622381	chr2R	10637115	10637120	mdg1	8	14763	3.5	3.0	3.2	1.9	14771	chr2R	10622349	intron	CG11883 +	chr2R	10629734	intron	CG11883 +	chr2R	10637120	intron	CG11883 +	chr2R_8_10625001	chr2R_10625001	D4-c1
781	chr2R	10948034	10948061	chr2R	10955586	10955613	17.6	5	7552	6.0	17.0	11.5	0.4	7579	chr2R	10948034	intergenic	not near genes	chr2R	10951824	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	D4-c1
783	chr2R	10979665	10979678	chr2R	10980136	10980149	297	5	471	3.5	5.0	4.2	1.0	484	chr2R	10979665	intergenic	not near genes	chr2R	10979907	intergenic	not near genes	chr2R	10980149	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	D4-c1
784	chr2R	11009814	11009848	chr2R	11018989	11019007	roo	7	9173	3.5	7.5	5.5	1.1	9193	chr2R	11009814	intron	luna -	chr2R	11014410	intron	luna -	chr2R	11019007	intron	luna -	chr2R_7_11010001	chr2R_11010001	D4-c1
785	chr2R	11019876	11019882	chr2R	11024943	11024949	jockey	6	5067	7.5	4.5	6.0	0.9	5073	chr2R	11019876	intron	luna -	chr2R	11022412	intron	luna -	chr2R	11024949	intron	luna -	chr2R_6_11020001	chr2R_11020001	D4-c1
786	chr2R	11019883	11019909	chr2R	11024942	11024976	jockey	9	5062	3.0	4.5	3.8	1.9	5093	chr2R	11019883	intron	luna -	chr2R	11022430	intron	luna -	chr2R	11024976	intron	luna -	chr2R_9_11020001	chr2R_11020001	D4-c1
787	chr2R	11134109	11134142	chr2R	11134351	11134384	pogo	12	242	2.5	2.0	2.2	3.8	275	chr2R	11134109	intergenic	not near genes	chr2R	11134246	intergenic	not near genes	chr2R	11134384	intergenic	not near genes	chr2R_12_11130001	chr2R_11130001	D4-c1
789	chr2R	11207813	11207846	chr2R	11208006	11208039	BS	21	193	6.5	4.0	5.2	3.4	226	chr2R	11207813	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208039	intron	shn +	chr2R_21_11205001	chr2R_11205001	D4-c1
793	chr2R	11297638	11297651	chr2R	11301960	11301973	flea	8	4322	4.5	2.0	3.2	1.9	4335	chr2R	11297638	intergenic	CG42336 -	chr2R	11299806	intergenic	not near genes	chr2R	11301973	5` UTR	CG7741 +	chr2R_8_11295001	chr2R_11295001	D4-c1
795	chr2R	11415519	11415545	chr2R	11418669	11418695	opus	10	3150	7.5	9.0	8.2	1.1	3176	chr2R	11415519	intron	Drip -	chr2R	11417107	intron	Drip -	chr2R	11418695	intron	Drip -	chr2R_10_11415001	chr2R_11415001	D4-c1
796	chr2R	11472647	11472677	chr2R	11473845	11473875	pogo	16	1198	5.5	6.0	5.8	2.4	1228	chr2R	11472647	intergenic	not near genes	chr2R	11473261	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_16_11470001	chr2R_11470001	D4-c1
812	chr2R	12481139	12481164	chr2R	12482944	12482969	roo	11	1803	4.0	5.5	4.8	1.9	1830	chr2R	12481139	exon	Dh44-R2 +	chr2R	12482054	intron	Dh44-R2 +	chr2R	12482969	intron	Dh44-R2 +	chr2R_11_12480001	chr2R_12480001	D4-c1
813	chr2R	12501697	12501723	chr2R	12503859	12503886	Rt1c	13	2162	2.0	9.0	5.5	2.0	2189	chr2R	12501697	intron	fdl -	chr2R	12502792	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_13_12500001	chr2R_12500001	D4-c1
823	chr2R	12707516	12707548	chr2R	12715883	12715915	roo	11	8367	0.0	2.0	1.0	5.5	8399	chr2R	12707516	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715915	intron	CG42663 +	chr2R_11_12710001	chr2R_12710001	D4-c1
827	chr2R	12789299	12789324	chr2R	12797663	12797669	roo	9	8362	5.5	5.0	5.2	1.5	8370	chr2R	12789299	intron,3` UTR	sca +,CR45137 -	chr2R	12793484	intron,intron	sca +,CR45137 -	chr2R	12797669	intron,3` UTR	sca +,CR45137 -	chr2R_9_12790001	chr2R_12790001	D4-c1
832	chr2R	13136840	13136871	chr2R	13141639	13141670	Doc	20	4799	4.0	5.0	4.5	3.6	4830	chr2R	13136840	exon	Cap-G +	chr2R	13139255	intron	Cap-G +	chr2R	13141670	intron	Cap-G +	chr2R_20_13135001	chr2R_13135001	D4-c1
842	chr2R	13580501	13580531	chr2R	13580852	13580882	jockey	14	351	1.0	6.0	3.5	3.1	381	chr2R	13580501	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580882	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_14_13580001	chr2R_13580001	D4-c1
847	chr2R	13728132	13728154	chr2R	13735790	13735812	opus	11	7658	6.5	3.5	5.0	1.8	7680	chr2R	13728132	intron	fas +	chr2R	13731972	intron	fas +	chr2R	13735812	intron	fas +	chr2R_11_13730001	chr2R_13730001	D4-c1
850	chr2R	13905601	13905609	chr2R	13907584	13907592	Rt1a	4	1983	9.5	7.5	8.5	0.4	1991	chr2R	13905601	intron	shot -	chr2R	13906596	intron	shot -	chr2R	13907592	intron	shot -	chr2R_4_13905001	chr2R_13905001	D4-c1
851	chr2R	13905611	13905633	chr2R	13907582	13907615	Rt1a	14	1981	5.5	7.5	6.5	1.9	2004	chr2R	13905611	intron	shot -	chr2R	13906613	intron	shot -	chr2R	13907615	intron	shot -	chr2R_14_13905001	chr2R_13905001	D4-c1
858	chr2R	14394231	14394246	chr2R	14399021	14399036	Doc	8	4790	7.5	3.0	5.2	1.3	4805	chr2R	14394231	intergenic	not near genes	chr2R	14396634	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_8_14395001	chr2R_14395001	D4-c1
859	chr2R	14467305	14467327	chr2R	14476464	14476476	roo	13	9158	2.0	4.0	3.0	3.2	9171	chr2R	14467305	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476476	5` UTR	CR44462 +	chr2R_13_14470001	chr2R_14470001	D4-c1
868	chr2R	14889211	14889236	chr2R	14897820	14897845	Max-element	14	8608	4.5	0.0	2.2	4.4	8634	chr2R	14889211	intergenic	Cyp6a8 -	chr2R	14893528	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_14_14890001	chr2R_14890001	D4-c1
874	chr2R	15004727	15004761	chr2R	15005057	15005091	jockey	16	330	2.0	6.5	4.2	3.1	364	chr2R	15004727	intergenic	not near genes	chr2R	15004909	intergenic	not near genes	chr2R	15005091	intergenic	not near genes	chr2R_16_15000001	chr2R_15000001	D4-c1
875	chr2R	15015453	15015488	chr2R	15022878	15022913	mdg1	10	7424	3.0	4.5	3.8	2.1	7460	chr2R	15015453	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022913	intron	hbs +	chr2R_10_15015001	chr2R_15015001	D4-c1
878	chr2R	15119315	15119350	chr2R	15127797	15127832	Tirant	11	8482	5.0	5.0	5.0	1.8	8517	chr2R	15119315	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127832	intron	chn +	chr2R_11_15120001	chr2R_15120001	D4-c1
898	chr2R	16539637	16539670	chr2R	16544847	16544880	copia	13	5210	3.5	1.5	2.5	3.7	5243	chr2R	16539637	intergenic	not near genes	chr2R	16542258	intergenic	not near genes	chr2R	16544880	intergenic	not near genes	chr2R_13_16540001	chr2R_16540001	D4-c1
902	chr2R	17147238	17147264	chr2R	17152270	17152296	jockey	8	5032	7.0	5.5	6.2	1.1	5058	chr2R	17147238	intergenic	not near genes	chr2R	17149767	intergenic	not near genes	chr2R	17152296	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	D4-c1
904	chr2R	17236506	17236540	chr2R	17241711	17241745	copia	13	5205	3.5	5.0	4.2	2.5	5239	chr2R	17236506	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_13_17235001	chr2R_17235001	D4-c1
905	chr2R	17485918	17485931	chr2R	17490689	17490702	F-element	6	4771	5.5	2.0	3.8	1.2	4784	chr2R	17485918	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488310	intron	NT5E-2 +	chr2R	17490702	intron	NT5E-2 +	chr2R_6_17485001	chr2R_17485001	D4-c1
910	chr2R	18045673	18045702	chr2R	18046026	18046055	jockey	8	353	2.5	2.0	2.2	2.5	382	chr2R	18045673	intergenic	not near genes	chr2R	18045864	intergenic	not near genes	chr2R	18046055	intergenic	CG5767 -	chr2R_8_18045001	chr2R_18045001	D4-c1
911	chr2R	18111688	18111709	chr2R	18115557	18115578	F-element	6	3869	7.0	4.5	5.8	0.9	3890	chr2R	18111688	intergenic	not near genes	chr2R	18113633	intergenic	not near genes	chr2R	18115578	intergenic	not near genes	chr2R_6_18110001	chr2R_18110001	D4-c1
916	chr2R	18358386	18358419	chr2R	18372599	18372632	roo	16	14213	5.0	3.5	4.2	3.1	14246	chr2R	18358386	intergenic	not near genes	chr2R	18365509	intergenic	not near genes	chr2R	18372632	intergenic	not near genes	chr2R_16_18365001	chr2R_18365001	D4-c1
918	chr2R	18487846	18487854	chr2R	18495317	18495325	blood	5	7471	1.0	8.0	4.5	0.9	7479	chr2R	18487846	intron	CG30116 -	chr2R	18491586	intron	CG30116 -	chr2R	18495325	intron	CG30116 -	chr2R_5_18490001	chr2R_18490001	D4-c1
923	chr2R	18575811	18575829	chr2R	18581988	18582018	3S18	10	6186	5.5	9.0	7.2	1.2	6207	chr2R	18575811	intron	GEFmeso -	chr2R	18578914	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_10_18575001	chr2R_18575001	D4-c1
924	chr2R	18590864	18590900	chr2R	18600017	18600052	roo	16	9153	3.5	4.0	3.8	3.3	9188	chr2R	18590864	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600052	intron	GEFmeso -	chr2R_16_18595001	chr2R_18595001	D4-c1
953	chr2R	19776593	19776630	chr2R	19779917	19779954	jockey	16	3324	3.5	5.5	4.5	2.9	3361	chr2R	19776593	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779954	intergenic	not near genes	chr2R_16_19775001	chr2R_19775001	D4-c1
956	chr2R	19914846	19914875	chr2R	19922259	19922288	mdg1	8	7413	5.5	5.0	5.2	1.3	7442	chr2R	19914846	intergenic	not near genes	chr2R	19918567	intergenic	not near genes	chr2R	19922288	intergenic	not near genes	chr2R_8_19915001	chr2R_19915001	D4-c1
959	chr2R	19957429	19957462	chr2R	19962632	19962665	copia	13	5199	2.0	6.5	4.2	2.5	5236	chr2R	19957429	intergenic	CG44623 +	chr2R	19960047	intergenic	not near genes	chr2R	19962665	intergenic	not near genes	chr2R_13_19960001	chr2R_19960001	D4-c1
961	chr2R	20069243	20069275	chr2R	20071874	20071895	opus	16	2630	6.5	6.5	6.5	2.1	2652	chr2R	20069243	intergenic	not near genes	chr2R	20070569	intergenic	not near genes	chr2R	20071895	intergenic	not near genes	chr2R_16_20070001	chr2R_20070001	D4-c1
970	chr2R	20739440	20739476	chr2R	20744209	20744245	F-element	16	4769	5.5	3.5	4.5	2.9	4805	chr2R	20739440	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744245	intron	dpr +	chr2R_16_20740001	chr2R_20740001	D4-c1
971	chr2R	20783314	20783332	chr2R	20788087	20788105	F-element	7	4773	4.0	7.0	5.5	1.1	4791	chr2R	20783314	intergenic	not near genes	chr2R	20785710	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_7_20785001	chr2R_20785001	D4-c1
983	chr2R	21151116	21151141	chr2R	21153750	21153775	opus	10	2634	8.0	7.5	7.8	1.1	2659	chr2R	21151116	intron	CG30389 -	chr2R	21152446	intron	CG30389 -	chr2R	21153775	intron	CG30389 -	chr2R_10_21150001	chr2R_21150001	D4-c1
999	chr2R	21738280	21738310	chr2R	21747441	21747471	roo	12	9158	2.0	6.0	4.0	2.4	9191	chr2R	21738280	intergenic	not near genes	chr2R	21742876	intergenic	not near genes	chr2R	21747471	intergenic	not near genes	chr2R_12_21740001	chr2R_21740001	D4-c1
1000	chr2R	21753081	21753113	chr2R	21753567	21753599	roo	9	486	3.5	3.0	3.2	2.1	518	chr2R	21753081	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753599	intergenic	not near genes	chr2R_9_21750001	chr2R_21750001	D4-c1
1001	chr2R	21809523	21809551	chr2R	21817764	21817792	roo	14	8241	7.0	2.5	4.8	2.4	8269	chr2R	21809523	intergenic	not near genes	chr2R	21813658	intergenic	not near genes	chr2R	21817792	intergenic	not near genes	chr2R_14_21810001	chr2R_21810001	D4-c1
1018	chr2R	22349691	22349720	chr2R	22351476	22351505	jockey	12	1785	8.0	5.0	6.5	1.6	1814	chr2R	22349691	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351505	intron	Liprin-gamma -	chr2R_12_22350001	chr2R_22350001	D4-c1
1019	chr2R	22360379	22360398	chr2R	22360813	22360814	jockey	13	433	5.5	4.0	4.8	2.2	435	chr2R	22360379	intron	Liprin-gamma -	chr2R	22360596	intron	Liprin-gamma -	chr2R	22360814	intron	Liprin-gamma -	chr2R_13_22360001	chr2R_22360001	D4-c1
1025	chr2R	22525743	22525785	chr2R	22529299	22529341	jockey	16	3556	4.5	2.0	3.2	3.8	3598	chr2R	22525743	intron	px -	chr2R	22527542	intron	px -	chr2R	22529341	intron	px -	chr2R_16_22525001	chr2R_22525001	D4-c1
1027	chr2R	22580436	22580445	chr2R	22586581	22586590	diver	4	6145	4.5	4.0	4.2	0.8	6154	chr2R	22580436	intron	dnr1 -	chr2R	22583513	intron	dnr1 -	chr2R	22586590	intron	dnr1 -	chr2R_4_22580001	chr2R_22580001	D4-c1
1033	chr2R	22774960	22775002	chr2R	22775380	22775422	jockey	28	420	3.5	4.5	4.0	5.6	462	chr2R	22774960	intron	CG42260 -	chr2R	22775191	intron	CG42260 -	chr2R	22775422	intron	CG42260 -	chr2R_28_22775001	chr2R_22775001	D4-c1
1052	chr2R	23529583	23529606	chr2R	23537152	23537183	412	14	7572	5.0	9.5	7.2	1.7	7600	chr2R	23529583	intron	bw -	chr2R	23533383	intron	bw -	chr2R	23537183	exon	bw -	chr2R_14_23530001	chr2R_23530001	D4-c1
1059	chr2R	23914299	23914331	chr2R	23921924	23921956	412	15	7625	3.0	9.0	6.0	2.1	7657	chr2R	23914299	exon	kcc +	chr2R	23918128	intron	kcc +	chr2R	23921956	intron	kcc +	chr2R_15_23915001	chr2R_23915001	D4-c1
1064	chr2R	24147065	24147098	chr2R	24154644	24154677	412	14	7578	5.0	5.5	5.2	2.3	7612	chr2R	24147065	intron	Dat +	chr2R	24150871	intron	Dat +	chr2R	24154677	intron	Dat +	chr2R_14_24150001	chr2R_24150001	D4-c1
1065	chr2R	24174101	24174114	chr2R	24186867	24186880	412	6	12766	21.0	20.0	20.5	0.3	12779	chr2R	24174101	exon	mRpS17 -	chr2R	24180490	intron	Nop60B +	chr2R	24186880	intron	ocm +	chr2R_6_24180001	chr2R_24180001	D4-c1
1066	chr2R	24177240	24177261	chr2R	24184726	24184747	412	6	7486	2.5	2.5	2.5	1.7	7507	chr2R	24177240	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184747	3` UTR	Nop60B +	chr2R_6_24180001	chr2R_24180001	D4-c1
1070	chr2R	24353425	24353454	chr2R	24361788	24361817	roo	6	8363	5.5	0.0	2.8	1.6	8392	chr2R	24353425	intron,intron	bs +,CR44811 -	chr2R	24357621	intron,intron	bs +,CR44811 -	chr2R	24361817	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	D4-c1
1079	chr2R	24647594	24647618	chr2R	24655152	24655176	412	7	7558	2.5	7.5	5.0	1.2	7582	chr2R	24647594	intergenic	not near genes	chr2R	24651385	intergenic	not near genes	chr2R	24655176	intergenic	not near genes	chr2R_7_24650001	chr2R_24650001	D4-c1
1081	chr2R	24727883	24727917	chr2R	24735392	24735426	mdg1	20	7506	3.0	6.5	4.8	3.4	7543	chr2R	24727883	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735426	intron	Mid1 -	chr2R_20_24730001	chr2R_24730001	D4-c1
1083	chr2R	24763611	24763642	chr2R	24765588	24765619	G2	22	1977	9.0	7.0	8.0	2.4	2008	chr2R	24763611	exon	CG3894 +	chr2R	24764615	intron	CG3894 +	chr2R	24765619	exon	CG3894 +	chr2R_22_24760001	chr2R_24760001	D4-c1
1093	chr2R	25141648	25141681	chr2R	25159339	25159372	roo	12	17691	2.5	2.0	2.2	3.8	17724	chr2R	25141648	intergenic	not near genes	chr2R	25150510	intergenic	not near genes	chr2R	25159372	intergenic	not near genes	chr2R_12_25150001	chr2R_25150001	D4-c1
1097	chr3L	402687	402714	chr3L	409741	409767	297	14	7054	9.5	4.5	7.0	1.8	7080	chr3L	402687	intergenic	not near genes	chr3L	406227	intergenic	not near genes	chr3L	409767	intergenic	not near genes	chr3L_14_405001	chr3L_405001	D4-c1
1108	chr3L	789919	789924	chr3L	790398	790403	roo	4	479	3.0	0.0	1.5	1.6	484	chr3L	789919	intergenic	not near genes	chr3L	790161	intergenic	not near genes	chr3L	790403	intergenic	not near genes	chr3L_4_790001	chr3L_790001	D4-c1
1110	chr3L	857997	858030	chr3L	866479	866505	Tirant	12	8480	4.5	5.5	5.0	2.0	8508	chr3L	857997	intergenic	not near genes	chr3L	862251	intergenic	not near genes	chr3L	866505	5` UTR	CG12502 +	chr3L_12_860001	chr3L_860001	D4-c1
1113	chr3L	925174	925208	chr3L	932600	932635	mdg1	10	7427	5.0	3.0	4.0	2.0	7461	chr3L	925174	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932635	intron	Glut1 +	chr3L_10_925001	chr3L_925001	D4-c1
1116	chr3L	939772	939801	chr3L	940894	940923	jockey	16	1122	3.5	6.0	4.8	2.8	1151	chr3L	939772	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940923	intron	Glut1 +	chr3L_16_940001	chr3L_940001	D4-c1
1122	chr3L	1047358	1047379	chr3L	1055164	1055192	412	5	7811	3.0	3.5	3.2	1.2	7834	chr3L	1047358	intron	bab1 -	chr3L	1051275	intron	bab1 -	chr3L	1055192	intron	bab1 -	chr3L_5_1050001	chr3L_1050001	D4-c1
1123	chr3L	1047383	1047384	chr3L	1055163	1055186	412	4	7797	2.0	3.5	2.8	1.1	7803	chr3L	1047383	intron	bab1 -	chr3L	1051284	intron	bab1 -	chr3L	1055186	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	D4-c1
1127	chr3L	1154131	1154162	chr3L	1163281	1163305	roo	13	9150	3.0	3.0	3.0	3.2	9174	chr3L	1154131	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163305	intron	bab2 -	chr3L_13_1155001	chr3L_1155001	D4-c1
1128	chr3L	1219597	1219625	chr3L	1227331	1227358	412	20	7734	3.0	8.0	5.5	3.1	7761	chr3L	1219597	intron	mwh +	chr3L	1223478	intron	mwh +	chr3L	1227358	intron	mwh +	chr3L_20_1220001	chr3L_1220001	D4-c1
1136	chr3L	1505994	1506032	chr3L	1513592	1513630	17.6	19	7598	5.0	5.5	5.2	3.1	7636	chr3L	1505994	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513630	intron,intron	Psa +,cue -	chr3L_19_1505001	chr3L_1505001	D4-c1
1138	chr3L	1740853	1740886	chr3L	1741097	1741130	pogo	9	243	3.5	6.0	4.8	1.6	277	chr3L	1740853	intron	Gk +	chr3L	1740992	intron	Gk +	chr3L	1741130	intron	Gk +	chr3L_9_1740001	chr3L_1740001	D4-c1
1145	chr3L	2108260	2108279	chr3L	2113465	2113484	copia	7	5205	4.5	3.0	3.8	1.5	5224	chr3L	2108260	intron	sls -	chr3L	2110872	intron	sls -	chr3L	2113484	intron	sls -	chr3L_7_2110001	chr3L_2110001	D4-c1
1158	chr3L	2447501	2447537	chr3L	2456658	2456694	roo	18	9157	3.0	4.0	3.5	4.0	9193	chr3L	2447501	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456694	intron	CG45186 +	chr3L_18_2450001	chr3L_2450001	D4-c1
1165	chr3L	2751455	2751466	chr3L	2755751	2755762	F-element	5	4296	13.0	9.0	11.0	0.4	4307	chr3L	2751455	intron	Mrtf -	chr3L	2753608	intron	Mrtf -	chr3L	2755762	intron	Mrtf -	chr3L_5_2750001	chr3L_2750001	D4-c1
1169	chr3L	2927847	2927869	chr3L	2936120	2936147	Tirant	7	8277	1.5	2.0	1.8	2.5	8300	chr3L	2927847	intron	Shab +	chr3L	2931997	intron	Shab +	chr3L	2936147	intron	Shab +	chr3L_7_2930001	chr3L_2930001	D4-c1
1172	chr3L	3040325	3040346	chr3L	3042115	3042136	S-element	6	1790	4.5	2.0	3.2	1.4	1811	chr3L	3040325	3` UTR	CG2162 +	chr3L	3041230	intergenic	not near genes	chr3L	3042136	intergenic	Jafrac2 +	chr3L_6_3040001	chr3L_3040001	D4-c1
1173	chr3L	3051742	3051757	chr3L	3051985	3052000	pogo	8	243	7.5	3.0	5.2	1.3	258	chr3L	3051742	3` UTR	CG32485 +	chr3L	3051871	intergenic	CG32485 +	chr3L	3052000	intergenic	CG32485 +	chr3L_8_3050001	chr3L_3050001	D4-c1
1174	chr3L	3061285	3061312	chr3L	3069869	3069896	Tirant	11	8584	7.0	6.0	6.5	1.5	8611	chr3L	3061285	intron	CG32486 -	chr3L	3065590	intron	CG32486 -	chr3L	3069896	intron	CG32486 -	chr3L_11_3065001	chr3L_3065001	D4-c1
1177	chr3L	3281437	3281474	chr3L	3281934	3281971	Doc	22	496	6.5	5.5	6.0	3.1	534	chr3L	3281437	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281971	intron	CG12017 +	chr3L_22_3280001	chr3L_3280001	D4-c1
1184	chr3L	3475072	3475112	chr3L	3475517	3475557	jockey	22	445	1.0	4.5	2.8	5.8	485	chr3L	3475072	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475557	intron	CG42324 +	chr3L_22_3475001	chr3L_3475001	D4-c1
1190	chr3L	3601296	3601330	chr3L	3606608	3606642	copia	17	5312	3.0	2.0	2.5	4.9	5346	chr3L	3601296	intron	Eip63E +	chr3L	3603969	intron	Eip63E +	chr3L	3606642	intron	Eip63E +	chr3L_17_3600001	chr3L_3600001	D4-c1
1198	chr3L	3833737	3833770	chr3L	3833979	3834012	pogo	11	242	5.0	3.5	4.2	2.1	275	chr3L	3833737	intron	enc +	chr3L	3833874	intron	enc +	chr3L	3834012	intron	enc +	chr3L_11_3830001	chr3L_3830001	D4-c1
1204	chr3L	4328740	4328765	chr3L	4336239	4336264	412	10	7499	3.0	7.5	5.2	1.6	7524	chr3L	4328740	intron	Cip4 -	chr3L	4332502	intron	Cip4 -	chr3L	4336264	intron	Cip4 -	chr3L_10_4330001	chr3L_4330001	D4-c1
1212	chr3L	4901126	4901155	chr3L	4907317	4907346	diver	18	6191	4.5	1.0	2.8	4.7	6220	chr3L	4901126	intergenic	CG13704 +	chr3L	4904236	intergenic	not near genes	chr3L	4907346	intergenic	not near genes	chr3L_18_4900001	chr3L_4900001	D4-c1
1215	chr3L	5034155	5034192	chr3L	5043308	5043345	roo	4	9153	4.0	2.0	3.0	1.0	9190	chr3L	5034155	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043345	intron	Con -	chr3L_4_5035001	chr3L_5035001	D4-c1
1216	chr3L	5045456	5045487	chr3L	5050238	5050269	Doc	12	4782	5.5	4.5	5.0	2.0	4813	chr3L	5045456	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050269	intron	Con -	chr3L_12_5045001	chr3L_5045001	D4-c1
1224	chr3L	5458061	5458078	chr3L	5466664	5466669	Max-element	7	8599	8.0	4.5	6.2	1.0	8608	chr3L	5458061	intergenic	not near genes	chr3L	5462365	intergenic	not near genes	chr3L	5466669	intergenic	not near genes	chr3L_7_5460001	chr3L_5460001	D4-c1
1227	chr3L	5537729	5537756	chr3L	5538072	5538073	jockey	16	341	3.0	7.0	5.0	2.7	344	chr3L	5537729	intergenic	not near genes	chr3L	5537901	intergenic	not near genes	chr3L	5538073	intergenic	CG10625 -	chr3L_16_5535001	chr3L_5535001	D4-c1
1232	chr3L	5910032	5910064	chr3L	5910274	5910306	pogo	8	242	6.0	5.0	5.5	1.2	274	chr3L	5910032	intron	CG13288 +	chr3L	5910169	intron	CG13288 +	chr3L	5910306	intron	CG13288 +	chr3L_8_5910001	chr3L_5910001	D4-c1
1233	chr3L	5926317	5926341	chr3L	5926508	5926532	BS	7	189	8.0	8.0	8.0	0.8	215	chr3L	5926317	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926532	intron	Vap-33B +	chr3L_7_5925001	chr3L_5925001	D4-c1
1234	chr3L	5926342	5926349	chr3L	5926507	5926540	BS	5	186	7.0	8.0	7.5	0.6	198	chr3L	5926342	intron	Vap-33B +	chr3L	5926441	intron	Vap-33B +	chr3L	5926540	intron	Vap-33B +	chr3L_5_5925001	chr3L_5925001	D4-c1
1238	chr3L	6001679	6001715	chr3L	6004380	6004416	jockey	8	2701	4.5	2.5	3.5	1.8	2737	chr3L	6001679	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004416	intron	PVRAP +	chr3L_8_6000001	chr3L_6000001	D4-c1
1239	chr3L	6040365	6040393	chr3L	6042722	6042750	Doc	7	2357	3.5	2.5	3.0	1.8	2385	chr3L	6040365	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042750	intergenic	not near genes	chr3L_7_6040001	chr3L_6040001	D4-c1
1242	chr3L	6220911	6220946	chr3L	6230064	6230099	roo	17	9152	7.0	5.5	6.2	2.4	9188	chr3L	6220911	5` UTR	pncr008:3L +	chr3L	6225505	intergenic	not near genes	chr3L	6230099	intergenic	not near genes	chr3L_17_6225001	chr3L_6225001	D4-c1
1243	chr3L	6335007	6335040	chr3L	6335479	6335512	297	12	472	5.0	8.0	6.5	1.6	505	chr3L	6335007	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_12_6335001	chr3L_6335001	D4-c1
1248	chr3L	6405659	6405689	chr3L	6432124	6432152	roo	9	26465	5.0	3.5	4.2	1.7	26493	chr3L	6405659	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432152	intron	CG42747 +	chr3L_9_6415001	chr3L_6415001	D4-c1
1259	chr3L	6781122	6781134	chr3L	6783136	6783148	Doc	5	2014	7.5	0.0	3.8	1.0	2026	chr3L	6781122	intergenic	not near genes	chr3L	6782135	intergenic	not near genes	chr3L	6783148	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	D4-c1
1261	chr3L	6855919	6855949	chr3L	6860703	6860734	Doc	10	4785	5.5	1.5	3.5	2.2	4815	chr3L	6855919	intergenic	not near genes	chr3L	6858326	intergenic	not near genes	chr3L	6860734	intergenic	not near genes	chr3L_10_6855001	chr3L_6855001	D4-c1
1263	chr3L	6887515	6887547	chr3L	6895008	6895040	roo	7	7493	4.5	4.5	4.5	1.3	7525	chr3L	6887515	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_7_6890001	chr3L_6890001	D4-c1
1267	chr3L	6994886	6994917	chr3L	6995498	6995529	BS	14	612	1.0	4.5	2.8	3.7	643	chr3L	6994886	intergenic	bin +	chr3L	6995208	intergenic	not near genes	chr3L	6995529	intergenic	not near genes	chr3L_14_6995001	chr3L_6995001	D4-c1
1276	chr3L	7377316	7377348	chr3L	7380421	7380454	297	14	3106	1.5	8.5	5.0	2.3	3138	chr3L	7377316	intron	SMSr -	chr3L	7378885	intron	SMSr -	chr3L	7380454	intron	SMSr -	chr3L_14_7375001	chr3L_7375001	D4-c1
1280	chr3L	7498757	7498783	chr3L	7503535	7503561	F-element	11	4778	3.5	5.0	4.2	2.1	4804	chr3L	7498757	5` UTR	CG8539 -	chr3L	7501159	intergenic	not near genes	chr3L	7503561	intergenic	not near genes	chr3L_11_7500001	chr3L_7500001	D4-c1
1292	chr3L	7793719	7793739	chr3L	7800772	7800792	297	7	7053	5.5	5.5	5.5	1.1	7073	chr3L	7793719	intron	CG32369 -	chr3L	7797256	intron	CG32369 -	chr3L	7800792	intron	CG32369 -	chr3L_7_7795001	chr3L_7795001	D4-c1
1294	chr3L	7886520	7886546	chr3L	7889039	7889065	Stalker4	7	2519	0.0	4.0	2.0	2.3	2545	chr3L	7886520	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_7_7885001	chr3L_7885001	D4-c1
1295	chr3L	7916829	7916862	chr3L	7926001	7926033	roo	10	9172	2.0	2.5	2.2	3.1	9204	chr3L	7916829	3` UTR	syd -	chr3L	7921431	intron	syd -	chr3L	7926033	3` UTR	syd -	chr3L_10_7920001	chr3L_7920001	D4-c1
1296	chr3L	7985361	7985395	chr3L	7987690	7987724	NOF	16	2329	3.5	3.5	3.5	3.6	2363	chr3L	7985361	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987724	intron	nmo +	chr3L_16_7985001	chr3L_7985001	D4-c1
1298	chr3L	8481770	8481780	chr3L	8490930	8490940	roo	6	9159	10.5	6.0	8.2	0.7	9170	chr3L	8481770	intron	CG43163 -	chr3L	8486355	intron	CG43163 -	chr3L	8490940	intron	CG43163 -	chr3L_6_8485001	chr3L_8485001	D4-c1
1299	chr3L	8481782	8481806	chr3L	8490929	8490966	roo	12	9157	5.5	5.5	5.5	1.8	9184	chr3L	8481782	intron	CG43163 -	chr3L	8486374	intron	CG43163 -	chr3L	8490966	intron	CG43163 -	chr3L_12_8485001	chr3L_8485001	D4-c1
1300	chr3L	8498296	8498329	chr3L	8505764	8505797	blood	10	7468	2.5	5.5	4.0	2.0	7501	chr3L	8498296	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505797	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	D4-c1
1304	chr3L	8791273	8791287	chr3L	8796694	8796708	I-element	7	5421	8.5	0.0	4.2	1.3	5435	chr3L	8791273	exon	Fhos +	chr3L	8793990	intron	Fhos +	chr3L	8796708	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	D4-c1
1311	chr3L	9076924	9076959	chr3L	9084485	9084520	412	11	7560	4.0	4.5	4.2	2.1	7596	chr3L	9076924	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084520	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	D4-c1
1314	chr3L	9130555	9130582	chr3L	9134317	9134344	412	14	3762	6.5	3.0	4.8	2.4	3789	chr3L	9130555	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134344	intergenic	Dhpr +	chr3L_14_9130001	chr3L_9130001	D4-c1
1315	chr3L	9164695	9164731	chr3L	9166163	9166199	hobo	12	1468	2.0	1.0	1.5	4.8	1504	chr3L	9164695	intron	Rdl -	chr3L	9165447	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_12_9165001	chr3L_9165001	D4-c1
1316	chr3L	9219241	9219274	chr3L	9219914	9219947	jockey	23	672	6.5	9.0	7.8	2.6	706	chr3L	9219241	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219947	intergenic	not near genes	chr3L_23_9215001	chr3L_9215001	D4-c1
1318	chr3L	9270615	9270651	chr3L	9278371	9278402	roo	8	7755	3.5	5.0	4.2	1.5	7787	chr3L	9270615	intron	GluRIB +	chr3L	9274508	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	D4-c1
1325	chr3L	9443509	9443535	chr3L	9445301	9445327	S-element	9	1792	4.0	0.0	2.0	3.0	1818	chr3L	9443509	intron	CG33926 +	chr3L	9444418	intron	CG33926 +	chr3L	9445327	intron	CG33926 +	chr3L_9_9440001	chr3L_9440001	D4-c1
1326	chr3L	9526483	9526515	chr3L	9528164	9528196	Doc	9	1681	3.5	2.0	2.8	2.4	1713	chr3L	9526483	intergenic	not near genes	chr3L	9527340	intergenic	not near genes	chr3L	9528196	intergenic	not near genes	chr3L_9_9525001	chr3L_9525001	D4-c1
1333	chr3L	9929669	9929697	chr3L	9938451	9938479	roo	13	8782	1.0	4.0	2.5	3.7	8810	chr3L	9929669	intron	CG34356 +	chr3L	9934074	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_13_9930001	chr3L_9930001	D4-c1
1350	chr3L	10414942	10414971	chr3L	10417315	10417344	Doc	15	2372	5.5	6.0	5.8	2.2	2402	chr3L	10414942	intergenic	CG12362 +	chr3L	10416143	intergenic	not near genes	chr3L	10417344	intergenic	not near genes	chr3L_15_10415001	chr3L_10415001	D4-c1
1366	chr3L	11087057	11087090	chr3L	11088847	11088880	S-element	14	1790	0.0	4.0	2.0	4.7	1823	chr3L	11087057	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088880	intron	JIL-1 -	chr3L_14_11085001	chr3L_11085001	D4-c1
1367	chr3L	11105290	11105328	chr3L	11107002	11107040	X-element	11	1712	3.5	5.0	4.2	2.1	1750	chr3L	11105290	intergenic	not near genes	chr3L	11106165	intergenic	not near genes	chr3L	11107040	exon	CG32073 -	chr3L_11_11105001	chr3L_11105001	D4-c1
1375	chr3L	11264464	11264495	chr3L	11271417	11271446	17.6	19	6952	8.5	2.5	5.5	2.9	6982	chr3L	11264464	intergenic	not near genes	chr3L	11267955	intergenic	not near genes	chr3L	11271446	intergenic	not near genes	chr3L_19_11265001	chr3L_11265001	D4-c1
1377	chr3L	11329698	11329726	chr3L	11332896	11332932	jockey	7	3204	4.0	7.0	5.5	1.1	3234	chr3L	11329698	intergenic	not near genes	chr3L	11331315	intergenic	not near genes	chr3L	11332932	intergenic	not near genes	chr3L_7_11330001	chr3L_11330001	D4-c1
1381	chr3L	11564792	11564799	chr3L	11572418	11572425	412	4	7626	7.0	14.5	10.8	0.3	7633	chr3L	11564792	exon	CG33267 +	chr3L	11568608	intron	CG33267 +	chr3L	11572425	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	D4-c1
1382	chr3L	11564803	11564807	chr3L	11572411	11572433	412	5	7622	6.0	10.5	8.2	0.5	7630	chr3L	11564803	exon	CG33267 +	chr3L	11568618	intron	CG33267 +	chr3L	11572433	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	D4-c1
1387	chr3L	11723082	11723114	chr3L	11727877	11727910	Doc	13	4796	4.5	3.0	3.8	2.7	4828	chr3L	11723082	3` UTR	Bmcp +	chr3L	11725496	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_13_11725001	chr3L_11725001	D4-c1
1421	chr3L	12874929	12874961	chr3L	12877222	12877253	jockey	16	2293	2.5	3.0	2.8	4.2	2324	chr3L	12874929	intergenic	not near genes	chr3L	12876091	intergenic	not near genes	chr3L	12877253	intergenic	not near genes	chr3L_16_12875001	chr3L_12875001	D4-c1
1423	chr3L	12919273	12919303	chr3L	12924747	12924777	Rt1c	25	5473	9.0	3.0	6.0	3.6	5504	chr3L	12919273	intergenic	not near genes	chr3L	12922025	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_25_12920001	chr3L_12920001	D4-c1
1424	chr3L	12957786	12957820	chr3L	12962269	12962303	copia	13	4483	3.5	5.0	4.2	2.5	4517	chr3L	12957786	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962303	intergenic	not near genes	chr3L_13_12960001	chr3L_12960001	D4-c1
1442	chr3L	13525163	13525190	chr3L	13532960	13532987	roo	7	7797	5.0	6.5	5.8	1.0	7824	chr3L	13525163	intergenic	not near genes	chr3L	13529075	intergenic	not near genes	chr3L	13532987	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	D4-c1
1448	chr3L	13804547	13804576	chr3L	13822834	13822863	roo	17	18287	6.0	6.0	6.0	2.4	18316	chr3L	13804547	intergenic	not near genes	chr3L	13813705	intergenic	not near genes	chr3L	13822863	intergenic	not near genes	chr3L_17_13810001	chr3L_13810001	D4-c1
1457	chr3L	14245565	14245593	chr3L	14245660	14245688	1360	15	95	7.0	4.0	5.5	2.3	123	chr3L	14245565	3` UTR	CR44561 -	chr3L	14245626	3` UTR	CR44561 -	chr3L	14245688	3` UTR	CR44561 -	chr3L_15_14245001	chr3L_14245001	D4-c1
1461	chr3L	14295979	14296013	chr3L	14296466	14296500	roo	12	487	8.0	6.0	7.0	1.5	521	chr3L	14295979	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296500	intron	fz +	chr3L_12_14295001	chr3L_14295001	D4-c1
1462	chr3L	14312020	14312058	chr3L	14316835	14316873	X-element	10	4812	1.5	1.5	1.5	4.0	4853	chr3L	14312020	exon	fz +	chr3L	14314446	intron	fz +	chr3L	14316873	intron	fz +	chr3L_10_14310001	chr3L_14310001	D4-c1
1468	chr3L	14468447	14468476	chr3L	14473654	14473683	copia	13	5207	2.0	5.0	3.5	2.9	5236	chr3L	14468447	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473683	intron	bbg -	chr3L_13_14470001	chr3L_14470001	D4-c1
1476	chr3L	14721183	14721210	chr3L	14723027	14723041	Rt1c	7	1842	5.0	7.5	6.2	1.0	1858	chr3L	14721183	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723041	intron	ome +	chr3L_7_14720001	chr3L_14720001	D4-c1
1477	chr3L	14725589	14725616	chr3L	14728584	14728611	Doc	4	2995	3.0	3.0	3.0	1.0	3022	chr3L	14725589	intron	ome +	chr3L	14727100	intron	ome +	chr3L	14728611	intron	ome +	chr3L_4_14725001	chr3L_14725001	D4-c1
1488	chr3L	15085056	15085081	chr3L	15086223	15086238	1360	10	1165	3.0	3.0	3.0	2.5	1182	chr3L	15085056	intron	cp309 -	chr3L	15085647	intron	cp309 -	chr3L	15086238	intron	cp309 -	chr3L_10_15085001	chr3L_15085001	D4-c1
1492	chr3L	15295767	15295801	chr3L	15298611	15298645	gypsy5	12	2844	3.0	9.5	6.2	1.7	2878	chr3L	15295767	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298645	intergenic	Best4 +	chr3L_12_15295001	chr3L_15295001	D4-c1
1494	chr3L	15423758	15423784	chr3L	15426603	15426629	opus	5	2845	4.5	3.5	4.0	1.0	2871	chr3L	15423758	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426629	intergenic	not near genes	chr3L_5_15425001	chr3L_15425001	D4-c1
1497	chr3L	15554922	15554951	chr3L	15556710	15556739	S-element	11	1788	8.5	3.5	6.0	1.6	1817	chr3L	15554922	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556739	intron	AGO2 +	chr3L_11_15555001	chr3L_15555001	D4-c1
1510	chr3L	15899222	15899258	chr3L	15899790	15899819	jockey	15	567	3.0	5.5	4.2	2.9	597	chr3L	15899222	intergenic	pHCl -	chr3L	15899520	intergenic	pHCl -	chr3L	15899819	intergenic	sff -	chr3L_15_15895001	chr3L_15895001	D4-c1
1511	chr3L	15929219	15929229	chr3L	15938367	15938377	roo	4	9148	0.0	5.0	2.5	1.1	9158	chr3L	15929219	intron	Pka-C3 -	chr3L	15933798	intron	Pka-C3 -	chr3L	15938377	intron	Pka-C3 -	chr3L_4_15930001	chr3L_15930001	D4-c1
1517	chr3L	16184103	16184139	chr3L	16188923	16188959	X-element	12	4820	4.0	1.0	2.5	3.4	4856	chr3L	16184103	intergenic	not near genes	chr3L	16186531	intergenic	not near genes	chr3L	16188959	intergenic	not near genes	chr3L_12_16185001	chr3L_16185001	D4-c1
1522	chr3L	16443852	16443878	chr3L	16446193	16446219	Doc	8	2341	4.0	5.0	4.5	1.5	2367	chr3L	16443852	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445036	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446219	intron,intron	CG33158 +,dsx-c73A -	chr3L_8_16445001	chr3L_16445001	D4-c1
1523	chr3L	16493974	16494012	chr3L	16494492	16494530	jockey	21	518	5.0	9.0	7.0	2.6	556	chr3L	16493974	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_21_16490001	chr3L_16490001	D4-c1
1529	chr3L	16616507	16616534	chr3L	16621836	16621863	297	7	5329	3.0	2.0	2.5	2.0	5356	chr3L	16616507	3` UTR	Abl -	chr3L	16619185	3` UTR	Abl -	chr3L	16621863	3` UTR	Abl -	chr3L_7_16615001	chr3L_16615001	D4-c1
1531	chr3L	16684028	16684042	chr3L	16689260	16689274	copia	4	5232	4.0	4.5	4.2	0.8	5246	chr3L	16684028	intron,intron	Lasp -,CG43954 -	chr3L	16686651	intron,intron	Lasp -,CG43954 -	chr3L	16689274	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_4_16685001	chr3L_16685001	D4-c1
1539	chr3L	16945725	16945759	chr3L	16954879	16954913	roo	24	9152	4.0	8.5	6.2	3.3	9188	chr3L	16945725	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954913	5` UTR	Nc73EF +	chr3L_24_16950001	chr3L_16950001	D4-c1
1540	chr3L	17085002	17085036	chr3L	17094152	17094186	roo	16	9150	6.5	5.0	5.8	2.4	9184	chr3L	17085002	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094186	intron	Rbp6 -	chr3L_16_17085001	chr3L_17085001	D4-c1
1555	chr3L	17516978	17517013	chr3L	17524537	17524572	412	14	7559	3.0	5.0	4.0	2.8	7594	chr3L	17516978	intron	CG7564 +	chr3L	17520775	intron	CG7564 +	chr3L	17524572	3` UTR	CG7564 +	chr3L_14_17520001	chr3L_17520001	D4-c1
1561	chr3L	17730850	17730878	chr3L	17738181	17738209	mdg1	11	7331	3.5	4.5	4.0	2.2	7359	chr3L	17730850	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738209	intron	Ccn +	chr3L_11_17730001	chr3L_17730001	D4-c1
1566	chr3L	17799811	17799840	chr3L	17801598	17801628	S-element	16	1788	4.0	2.0	3.0	4.0	1817	chr3L	17799811	intron	NUCB1 -	chr3L	17800720	intron	NUCB1 -	chr3L	17801628	intron	NUCB1 -	chr3L_16_17800001	chr3L_17800001	D4-c1
1569	chr3L	17918374	17918405	chr3L	17921178	17921209	opus	8	2804	3.5	2.5	3.0	2.0	2835	chr3L	17918374	intergenic	not near genes	chr3L	17919792	intergenic	not near genes	chr3L	17921209	intergenic	not near genes	chr3L_8_17915001	chr3L_17915001	D4-c1
1573	chr3L	18047704	18047738	chr3L	18056762	18056796	roo	8	9058	2.0	2.0	2.0	2.7	9092	chr3L	18047704	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056796	intron	Eip75B -	chr3L_8_18050001	chr3L_18050001	D4-c1
1592	chr3L	18506133	18506163	chr3L	18509597	18509627	F-element	13	3464	3.5	3.0	3.2	3.1	3494	chr3L	18506133	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509627	intergenic	not near genes	chr3L_13_18505001	chr3L_18505001	D4-c1
1593	chr3L	18528627	18528660	chr3L	18537789	18537822	roo	7	9162	2.5	6.0	4.2	1.3	9195	chr3L	18528627	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537822	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	D4-c1
1595	chr3L	18593946	18593981	chr3L	18595927	18595959	Doc	9	1981	3.0	0.0	1.5	3.6	2013	chr3L	18593946	intergenic	term -	chr3L	18594952	intergenic	not near genes	chr3L	18595959	intergenic	CR45389 +	chr3L_9_18590001	chr3L_18590001	D4-c1
1602	chr3L	18772411	18772440	chr3L	18781093	18781122	roo	11	8682	2.5	6.5	4.5	2.0	8711	chr3L	18772411	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_11_18775001	chr3L_18775001	D4-c1
1612	chr3L	19008846	19008871	chr3L	19009185	19009203	jockey	14	338	3.0	5.5	4.2	2.7	357	chr3L	19008846	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009203	intron	nkd -	chr3L_14_19005001	chr3L_19005001	D4-c1
1616	chr3L	19117039	19117073	chr3L	19124487	19124521	mdg1	14	7448	3.0	2.0	2.5	4.0	7482	chr3L	19117039	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124521	intron	CG14082 -	chr3L_14_19120001	chr3L_19120001	D4-c1
1621	chr3L	19208057	19208088	chr3L	19209432	19209463	Doc	12	1375	5.0	5.5	5.2	1.9	1406	chr3L	19208057	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209463	intron	fz2 -	chr3L_12_19205001	chr3L_19205001	D4-c1
1636	chr3L	19820298	19820316	chr3L	19827848	19827866	412	10	7550	4.5	2.0	3.2	2.4	7568	chr3L	19820298	intron	Deaf1 +	chr3L	19824082	intron	Deaf1 +	chr3L	19827866	intron	Deaf1 +	chr3L_10_19820001	chr3L_19820001	D4-c1
1637	chr3L	19848502	19848535	chr3L	19857693	19857726	roo	14	9191	2.0	6.5	4.2	2.7	9224	chr3L	19848502	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857726	intron	Papss +	chr3L_14_19850001	chr3L_19850001	D4-c1
1638	chr3L	19861819	19861852	chr3L	19863608	19863641	S-element	13	1789	3.0	4.5	3.8	2.7	1822	chr3L	19861819	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863641	intergenic	not near genes	chr3L_13_19860001	chr3L_19860001	D4-c1
1645	chr3L	20113656	20113689	chr3L	20122914	20122947	roo	15	9258	1.5	4.5	3.0	3.8	9291	chr3L	20113656	intergenic	not near genes	chr3L	20118302	intergenic	not near genes	chr3L	20122947	intergenic	not near genes	chr3L_15_20115001	chr3L_20115001	D4-c1
1650	chr3L	20257331	20257363	chr3L	20258452	20258484	pogo	14	1121	6.0	6.0	6.0	2.0	1153	chr3L	20257331	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258484	intron	rdgC +	chr3L_14_20255001	chr3L_20255001	D4-c1
1654	chr3L	20476751	20476783	chr3L	20484351	20484383	springer	10	7600	4.0	3.5	3.8	2.1	7632	chr3L	20476751	3` UTR	isoQC +	chr3L	20480567	intergenic	not near genes	chr3L	20484383	3` UTR	ZnT77C -	chr3L_10_20480001	chr3L_20480001	D4-c1
1655	chr3L	20487660	20487674	chr3L	20488112	20488126	INE-1	8	452	8.0	3.5	5.8	1.2	466	chr3L	20487660	intron	ZnT77C -	chr3L	20487893	intron	ZnT77C -	chr3L	20488126	intron	ZnT77C -	chr3L_8_20485001	chr3L_20485001	D4-c1
1658	chr3L	20590062	20590097	chr3L	20590602	20590637	412	12	540	4.5	6.5	5.5	1.8	575	chr3L	20590062	intergenic	not near genes	chr3L	20590350	intergenic	not near genes	chr3L	20590637	intergenic	not near genes	chr3L_12_20590001	chr3L_20590001	D4-c1
1660	chr3L	20821294	20821308	chr3L	20824764	20824778	NOF	7	3470	3.0	4.5	3.8	1.5	3484	chr3L	20821294	intron	Pka-R1 +	chr3L	20823036	intron	Pka-R1 +	chr3L	20824778	intron	Pka-R1 +	chr3L_7_20820001	chr3L_20820001	D4-c1
1664	chr3L	21014913	21014948	chr3L	21023395	21023430	Tirant	19	8482	6.5	8.5	7.5	2.2	8517	chr3L	21014913	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023430	intron	skd -	chr3L_19_21015001	chr3L_21015001	D4-c1
1666	chr3L	21151868	21151889	chr3L	21156953	21156974	flea	10	5085	7.0	4.5	5.8	1.5	5106	chr3L	21151868	intron	Ac78C -	chr3L	21154421	intron	Ac78C -	chr3L	21156974	intron	Ac78C -	chr3L_10_21150001	chr3L_21150001	D4-c1
1668	chr3L	21243747	21243766	chr3L	21251311	21251330	412	4	7564	5.5	7.0	6.2	0.6	7583	chr3L	21243747	intron	Eip78C +	chr3L	21247538	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	D4-c1
1670	chr3L	21306146	21306181	chr3L	21315306	21315341	roo	19	9160	4.0	5.5	4.8	3.3	9195	chr3L	21306146	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310744	intron	Pc -	chr3L	21315341	3` UTR	Pc -	chr3L_19_21310001	chr3L_21310001	D4-c1
1676	chr3L	21498840	21498870	chr3L	21500469	21500507	1360	15	1636	4.0	6.0	5.0	2.5	1667	chr3L	21498840	intron	Glg1 -	chr3L	21499674	intron	Glg1 -	chr3L	21500507	intron	Glg1 -	chr3L_15_21495001	chr3L_21495001	D4-c1
1678	chr3L	21749313	21749350	chr3L	21754474	21754498	Doc	14	5160	3.0	4.0	3.5	3.1	5185	chr3L	21749313	intron	Syn1 -	chr3L	21751906	intron	Syn1 -	chr3L	21754498	intron	Syn1 -	chr3L_14_21750001	chr3L_21750001	D4-c1
1684	chr3L	22099674	22099703	chr3L	22105861	22105890	3S18	15	6186	6.0	4.0	5.0	2.5	6216	chr3L	22099674	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_15_22100001	chr3L_22100001	D4-c1
1691	chr3L	22555767	22555799	chr3L	22563238	22563270	blood	10	7471	4.0	4.0	4.0	2.0	7503	chr3L	22555767	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563270	intergenic	not near genes	chr3L_10_22555001	chr3L_22555001	D4-c1
1693	chr3L	22577627	22577648	chr3L	22582416	22582437	Doc	9	4788	7.5	4.0	5.8	1.3	4810	chr3L	22577627	intergenic	not near genes	chr3L	22580032	intergenic	not near genes	chr3L	22582437	3` UTR	CG14459 -	chr3L_9_22580001	chr3L_22580001	D4-c1
1694	chr3L	22617187	22617222	chr3L	22624640	22624650	blood	16	7451	6.5	3.5	5.0	2.7	7463	chr3L	22617187	intron	CG14459 -	chr3L	22620918	intron	CG14459 -	chr3L	22624650	intron	CG14459 -	chr3L_16_22620001	chr3L_22620001	D4-c1
1697	chr3L	22761385	22761423	chr3L	22766820	22766858	Ivk	12	5435	3.5	6.0	4.8	2.1	5473	chr3L	22761385	intron	SPoCk +	chr3L	22764122	intron	SPoCk +	chr3L	22766858	intron	SPoCk +	chr3L_12_22760001	chr3L_22760001	D4-c1
1701	chr3L	22865985	22866011	chr3L	22867119	22867145	Doc	9	1134	5.5	3.5	4.5	1.6	1160	chr3L	22865985	intron	CG33170 +	chr3L	22866565	intron	CG33170 +	chr3L	22867145	intron	CG33170 +	chr3L_9_22865001	chr3L_22865001	D4-c1
1703	chr3L	22989866	22989890	chr3L	22996841	22996865	297	9	6975	6.0	5.5	5.8	1.3	6999	chr3L	22989866	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996865	intergenic	not near genes	chr3L_9_22990001	chr3L_22990001	D4-c1
1704	chr3L	23042226	23042257	chr3L	23048980	23049011	gypsy6	16	6753	3.5	8.5	6.0	2.3	6785	chr3L	23042226	intergenic	not near genes	chr3L	23045618	intergenic	not near genes	chr3L	23049011	intergenic	not near genes	chr3L_16_23045001	chr3L_23045001	D4-c1
1706	chr3L	23062893	23062899	chr3L	25074004	25074010	Tirant	6	2011111	11.0	26.0	18.5	0.3	2011117	chr3L	23062893	intergenic	not near genes	chr3L	24068452	intergenic	not near genes	chr3L	25074010	intergenic	not near genes	chr3L_6_24065001	chr3L_24065001	D4-c1
1712	chr3L	24012409	24012438	chr3L	24020751	24020780	roo	8	8342	2.5	5.5	4.0	1.6	8371	chr3L	24012409	intergenic	not near genes	chr3L	24016594	intergenic	not near genes	chr3L	24020780	intergenic	not near genes	chr3L_8_24015001	chr3L_24015001	D4-c1
1713	chr3L	24168786	24168822	chr3L	24176115	24176151	ZAM	13	7328	6.5	7.5	7.0	1.6	7365	chr3L	24168786	intron	Snap25 +	chr3L	24172468	intron	Snap25 +	chr3L	24176151	intron	Snap25 +	chr3L_13_24170001	chr3L_24170001	D4-c1
1714	chr3L	24791895	24791922	chr3L	24796675	24796702	Doc	7	4780	5.0	4.5	4.8	1.2	4807	chr3L	24791895	intergenic	not near genes	chr3L	24794298	intergenic	not near genes	chr3L	24796702	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	D4-c1
1722	chr3R	1867168	1867170	chr3R	1954914	1954922	Doc3-element	5	87750	21.0	13.0	17.0	0.3	87754	chr3R	1867168	intron	CG42623 +	chr3R	1911045	intron	CG42623 +	chr3R	1954922	intergenic	not near genes	chr3R_5_1910001	chr3R_1910001	D4-c1
1728	chr3R	4206073	4206104	chr3R	4211649	4211680	mdg3	5	5576	4.0	3.0	3.5	1.1	5607	chr3R	4206073	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211680	intron	CG14636 -	chr3R_5_4205001	chr3R_4205001	D4-c1
1729	chr3R	4366755	4366790	chr3R	4375139	4375174	roo	18	8384	3.0	3.0	3.0	4.5	8419	chr3R	4366755	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375174	5` UTR	CR44922 +	chr3R_18_4370001	chr3R_4370001	D4-c1
1730	chr3R	4408410	4408442	chr3R	4412715	4412747	Juan	13	4305	7.5	1.0	4.2	2.5	4337	chr3R	4408410	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412747	intron	CG32944 -	chr3R_13_4410001	chr3R_4410001	D4-c1
1734	chr3R	4683181	4683208	chr3R	4684941	4684968	S-element	16	1760	5.0	8.5	6.8	2.1	1787	chr3R	4683181	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684968	intron	CG43427 +	chr3R_16_4680001	chr3R_4680001	D4-c1
1737	chr3R	4753237	4753263	chr3R	4757541	4757567	F-element	10	4304	6.0	8.0	7.0	1.2	4330	chr3R	4753237	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757567	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	D4-c1
1740	chr3R	4887477	4887508	chr3R	4894855	4894883	rover	12	7377	9.0	4.5	6.8	1.5	7406	chr3R	4887477	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894883	intergenic	not near genes	chr3R_12_4890001	chr3R_4890001	D4-c1
1746	chr3R	5045842	5045878	chr3R	5052945	5052981	HMS-Beagle	13	7103	6.0	5.5	5.8	1.9	7139	chr3R	5045842	intron	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5052981	intergenic	CR45588 -	chr3R_13_5045001	chr3R_5045001	D4-c1
1748	chr3R	5067979	5068014	chr3R	5073497	5073532	mdg3	20	5518	6.5	5.5	6.0	2.9	5553	chr3R	5067979	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073532	intergenic	not near genes	chr3R_20_5070001	chr3R_5070001	D4-c1
1755	chr3R	5338400	5338427	chr3R	5343578	5343605	Rt1c	19	5178	7.5	9.5	8.5	2.0	5205	chr3R	5338400	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343605	intron	mtd -	chr3R_19_5340001	chr3R_5340001	D4-c1
1758	chr3R	5445958	5445992	chr3R	5452419	5452453	Burdock	13	6461	4.0	2.5	3.2	3.1	6495	chr3R	5445958	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452453	intron	CG14669 +	chr3R_13_5445001	chr3R_5445001	D4-c1
1765	chr3R	5746014	5746045	chr3R	5746256	5746287	pogo	23	242	8.5	6.0	7.2	2.8	273	chr3R	5746014	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_23_5745001	chr3R_5745001	D4-c1
1766	chr3R	5747011	5747046	chr3R	5753203	5753238	diver	8	6192	5.0	4.0	4.5	1.5	6227	chr3R	5747011	intergenic	Madm +	chr3R	5750124	intergenic	not near genes	chr3R	5753238	intergenic	CG2091 -	chr3R_8_5750001	chr3R_5750001	D4-c1
1770	chr3R	5809114	5809145	chr3R	5809356	5809387	pogo	11	242	3.0	5.0	4.0	2.2	273	chr3R	5809114	3` UTR	CG11000 +	chr3R	5809250	3` UTR	CG11000 +	chr3R	5809387	3` UTR	CG11000 +	chr3R_11_5805001	chr3R_5805001	D4-c1
1771	chr3R	5822383	5822408	chr3R	5823551	5823575	1360	12	1168	4.0	7.0	5.5	1.8	1192	chr3R	5822383	3` UTR	CG2023 -	chr3R	5822979	3` UTR	CG2023 -	chr3R	5823575	3` UTR	CG2023 -	chr3R_12_5820001	chr3R_5820001	D4-c1
1773	chr3R	5927559	5927590	chr3R	5927800	5927831	pogo	18	241	7.5	3.0	5.2	2.9	272	chr3R	5927559	intron	CG34113 -	chr3R	5927695	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_18_5925001	chr3R_5925001	D4-c1
1776	chr3R	6015968	6015995	chr3R	6024470	6024497	Tirant	17	8501	4.0	4.0	4.0	3.4	8529	chr3R	6015968	intergenic	not near genes	chr3R	6020232	intergenic	not near genes	chr3R	6024497	intergenic	not near genes	chr3R_17_6020001	chr3R_6020001	D4-c1
1782	chr3R	6158519	6158540	chr3R	6167102	6167124	Tirant	5	8582	9.5	8.0	8.8	0.5	8605	chr3R	6158519	intergenic	not near genes	chr3R	6162822	intergenic	not near genes	chr3R	6167124	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	D4-c1
1783	chr3R	6175170	6175207	chr3R	6182443	6182480	HMS-Beagle2	10	7271	4.0	9.0	6.5	1.3	7310	chr3R	6175170	intergenic	Osi1 +	chr3R	6178825	intron	CR45194 +	chr3R	6182480	intergenic	CR45194 +	chr3R_10_6175001	chr3R_6175001	D4-c1
1784	chr3R	6206283	6206316	chr3R	6206500	6206534	BS	16	218	4.5	5.0	4.8	2.8	251	chr3R	6206283	exon	Osi24 +	chr3R	6206408	intron	Osi24 +	chr3R	6206534	intron	Osi24 +	chr3R_16_6205001	chr3R_6205001	D4-c1
1788	chr3R	6510022	6510056	chr3R	6515104	6515138	jockey	11	5082	4.0	1.5	2.8	2.9	5116	chr3R	6510022	intergenic	not near genes	chr3R	6512580	intergenic	not near genes	chr3R	6515138	intergenic	not near genes	chr3R_11_6510001	chr3R_6510001	D4-c1
1796	chr3R	6737497	6737531	chr3R	6739285	6739319	Doc	17	1788	3.5	4.0	3.8	3.5	1822	chr3R	6737497	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739319	intron	pb -	chr3R_17_6735001	chr3R_6735001	D4-c1
1817	chr3R	7729463	7729498	chr3R	7737402	7737437	Stalker2	20	7939	6.5	5.0	5.8	2.9	7974	chr3R	7729463	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_20_7730001	chr3R_7730001	D4-c1
1818	chr3R	7973316	7973345	chr3R	7974379	7974408	1360	12	1063	6.5	6.0	6.2	1.7	1092	chr3R	7973316	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974408	3` UTR	CD98hc -	chr3R_12_7970001	chr3R_7970001	D4-c1
1822	chr3R	8090568	8090571	chr3R	8094043	8094049	297	4	3477	8.0	14.5	11.2	0.3	3481	chr3R	8090568	intergenic	CR44330 +	chr3R	8092308	intergenic	not near genes	chr3R	8094049	intergenic	CG7900 +	chr3R_4_8090001	chr3R_8090001	D4-c1
1823	chr3R	8094405	8094437	chr3R	8099711	8099743	Transpac	12	5306	4.0	5.5	4.8	2.1	5338	chr3R	8094405	intron	CG7900 +	chr3R	8097074	intron	CG7900 +	chr3R	8099743	intron	CG7900 +	chr3R_12_8095001	chr3R_8095001	D4-c1
1824	chr3R	8101770	8101788	chr3R	8104855	8104873	G2	10	3085	7.0	6.5	6.8	1.3	3103	chr3R	8101770	exon	CG7900 +	chr3R	8103322	intron	CG7900 +	chr3R	8104873	3` UTR	CG7900 +	chr3R_10_8100001	chr3R_8100001	D4-c1
1826	chr3R	8207556	8207588	chr3R	8208402	8208434	F-element	9	846	2.0	8.0	5.0	1.5	878	chr3R	8207556	intergenic	not near genes	chr3R	8207995	intergenic	not near genes	chr3R	8208434	intergenic	not near genes	chr3R_9_8205001	chr3R_8205001	D4-c1
1835	chr3R	8403004	8403035	chr3R	8412171	8412201	roo	16	9166	7.0	6.5	6.8	2.1	9197	chr3R	8403004	intron	CG45263 -	chr3R	8407602	intron	CG45263 -	chr3R	8412201	intron	CG45263 -	chr3R_16_8405001	chr3R_8405001	D4-c1
1837	chr3R	8570476	8570499	chr3R	8575112	8575134	HMS-Beagle	10	4636	5.5	2.0	3.8	2.1	4658	chr3R	8570476	intergenic	not near genes	chr3R	8572805	intergenic	not near genes	chr3R	8575134	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	D4-c1
1838	chr3R	8601768	8601799	chr3R	8610922	8610953	roo	9	9154	7.0	3.5	5.2	1.5	9185	chr3R	8601768	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610953	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	D4-c1
1842	chr3R	8707353	8707387	chr3R	8709795	8709829	jockey	14	2442	6.5	4.5	5.5	2.2	2476	chr3R	8707353	intergenic	not near genes	chr3R	8708591	intergenic	not near genes	chr3R	8709829	intergenic	not near genes	chr3R_14_8705001	chr3R_8705001	D4-c1
1853	chr3R	9278777	9278811	chr3R	9284038	9284072	Rt1a	18	5261	5.5	7.5	6.5	2.4	5295	chr3R	9278777	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284072	intergenic	not near genes	chr3R_18_9280001	chr3R_9280001	D4-c1
1854	chr3R	9304525	9304536	chr3R	9311813	9311822	Stalker4	6	7288	7.5	4.0	5.8	0.9	7297	chr3R	9304525	intron	CG8861 -	chr3R	9308174	intron	CG8861 -	chr3R	9311822	intron	CG8861 -	chr3R_6_9305001	chr3R_9305001	D4-c1
1855	chr3R	9319575	9319607	chr3R	9320011	9320043	jockey	10	436	3.5	9.0	6.2	1.4	468	chr3R	9319575	intron	CG8861 -	chr3R	9319809	intron	CG8861 -	chr3R	9320043	intron	CG8861 -	chr3R_10_9315001	chr3R_9315001	D4-c1
1856	chr3R	9361820	9361846	chr3R	9362062	9362086	pogo	8	242	3.0	5.5	4.2	1.5	266	chr3R	9361820	3` UTR	CG45050 +	chr3R	9361953	3` UTR	CG45050 +	chr3R	9362086	3` UTR	CG45050 +	chr3R_8_9360001	chr3R_9360001	D4-c1
1861	chr3R	9699971	9700003	chr3R	9700061	9700093	1360	18	89	5.0	10.0	7.5	2.1	122	chr3R	9699971	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700093	intron	Unc-115a -	chr3R_18_9700001	chr3R_9700001	D4-c1
1868	chr3R	10231780	10231815	chr3R	10237358	10237393	mdg3	12	5578	2.5	6.0	4.2	2.3	5613	chr3R	10231780	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237393	intron	CG42795 +	chr3R_12_10230001	chr3R_10230001	D4-c1
1869	chr3R	10255378	10255385	chr3R	10260818	10260826	I-element	4	5441	6.5	5.5	6.0	0.6	5448	chr3R	10255378	exon	Sirt6 -	chr3R	10258102	intron	Sirt6 -	chr3R	10260826	exon	Sirt6 -	chr3R_4_10255001	chr3R_10255001	D4-c1
1878	chr3R	10804173	10804208	chr3R	10811706	10811741	17.6	21	7533	2.5	4.5	3.5	4.7	7568	chr3R	10804173	intergenic	CG14692 -	chr3R	10807957	intergenic	not near genes	chr3R	10811741	3` UTR	CG14693 -	chr3R_21_10805001	chr3R_10805001	D4-c1
1890	chr3R	11379233	11379269	chr3R	11388389	11388425	roo	14	9156	5.0	4.5	4.8	2.4	9192	chr3R	11379233	intron	pros +	chr3R	11383829	intron	pros +	chr3R	11388425	intron	pros +	chr3R_14_11380001	chr3R_11380001	D4-c1
1898	chr3R	11841061	11841099	chr3R	11846253	11846259	BS	18	5190	5.5	5.5	5.5	2.8	5198	chr3R	11841061	intron	CG6959 -	chr3R	11843660	intron	CG6959 -	chr3R	11846259	intron	CG6959 -	chr3R_18_11840001	chr3R_11840001	D4-c1
1901	chr3R	12022882	12022912	chr3R	12025060	12025090	pogo	12	2176	5.0	10.0	7.5	1.4	2208	chr3R	12022882	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025090	intergenic	not near genes	chr3R_12_12020001	chr3R_12020001	D4-c1
1926	chr3R	12920149	12920185	chr3R	12925353	12925377	copia	15	5203	3.5	4.5	4.0	3.0	5228	chr3R	12920149	intron	beat-Vb +	chr3R	12922763	intron	beat-Vb +	chr3R	12925377	intron	beat-Vb +	chr3R_15_12920001	chr3R_12920001	D4-c1
1931	chr3R	13135828	13135858	chr3R	13138004	13138034	pogo	9	2174	8.0	5.0	6.5	1.2	2206	chr3R	13135828	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136931	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138034	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13135001	chr3R_13135001	D4-c1
1932	chr3R	13143038	13143064	chr3R	13148615	13148641	mdg3	16	5575	7.5	10.5	9.0	1.6	5603	chr3R	13143038	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145840	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_16_13145001	chr3R_13145001	D4-c1
1937	chr3R	13314106	13314132	chr3R	13318895	13318921	Doc	7	4789	3.0	4.5	3.8	1.5	4815	chr3R	13314106	intergenic	not near genes	chr3R	13316514	intergenic	not near genes	chr3R	13318921	intergenic	CG45080 -	chr3R_7_13315001	chr3R_13315001	D4-c1
1956	chr3R	14021647	14021680	chr3R	14023465	14023498	S-element	14	1818	4.5	2.0	3.2	3.3	1851	chr3R	14021647	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023498	intron	rdx -	chr3R_14_14020001	chr3R_14020001	D4-c1
1961	chr3R	14180811	14180838	chr3R	14185577	14185604	F-element	11	4766	3.0	3.0	3.0	2.8	4793	chr3R	14180811	intron	Dop1R1 -	chr3R	14183208	intron	Dop1R1 -	chr3R	14185604	intron	Dop1R1 -	chr3R_11_14180001	chr3R_14180001	D4-c1
1962	chr3R	14246392	14246417	chr3R	14247889	14247914	jockey	14	1497	9.0	5.5	7.2	1.7	1522	chr3R	14246392	intergenic	not near genes	chr3R	14247153	intergenic	not near genes	chr3R	14247914	intergenic	not near genes	chr3R_14_14245001	chr3R_14245001	D4-c1
1985	chr3R	15059276	15059475	chr3R	15059471	15059563	BS	7	118	0.0	0.0	0.0	7.0	287	chr3R	15059276	intron	dpr9 -	chr3R	15059420	intron	dpr9 -	chr3R	15059563	intron	dpr9 -	chr3R_7_15055001	chr3R_15055001	D4-c1
1987	chr3R	15079805	15079839	chr3R	15080047	15080081	pogo	11	242	8.0	1.0	4.5	2.0	276	chr3R	15079805	3` UTR	CG6966 -	chr3R	15079943	3` UTR	CG6966 -	chr3R	15080081	3` UTR	CG6966 -	chr3R_11_15075001	chr3R_15075001	D4-c1
1988	chr3R	15132058	15132093	chr3R	15135119	15135160	Juan	19	3063	9.0	10.0	9.5	1.8	3102	chr3R	15132058	intergenic	CG42788 -	chr3R	15133609	intergenic	not near genes	chr3R	15135160	3` UTR	CG6912 -	chr3R_19_15130001	chr3R_15130001	D4-c1
1990	chr3R	15162548	15162562	chr3R	15167317	15167331	F-element	7	4769	7.5	1.0	4.2	1.3	4783	chr3R	15162548	intron	Gyc88E +	chr3R	15164940	intron	Gyc88E +	chr3R	15167331	intron	Gyc88E +	chr3R_7_15160001	chr3R_15160001	D4-c1
1995	chr3R	15601163	15601196	chr3R	15608686	15608719	412	19	7523	6.5	6.0	6.2	2.6	7556	chr3R	15601163	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608719	intergenic	not near genes	chr3R_19_15600001	chr3R_15600001	D4-c1
1996	chr3R	15618746	15618763	chr3R	15626221	15626238	blood	7	7475	1.5	4.5	3.0	1.8	7492	chr3R	15618746	intergenic	not near genes	chr3R	15622492	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_7_15620001	chr3R_15620001	D4-c1
2004	chr3R	16756316	16756354	chr3R	16762508	16762546	diver	12	6192	7.0	5.0	6.0	1.7	6230	chr3R	16756316	intron	bxd -	chr3R	16759431	intron	bxd -	chr3R	16762546	intron	bxd -	chr3R_12_16755001	chr3R_16755001	D4-c1
2008	chr3R	17294666	17294698	chr3R	17295095	17295127	BS	12	429	5.5	3.0	4.2	2.3	461	chr3R	17294666	intergenic	not near genes	chr3R	17294896	intergenic	not near genes	chr3R	17295127	intergenic	not near genes	chr3R_12_17290001	chr3R_17290001	D4-c1
2018	chr3R	17591288	17591322	chr3R	17591724	17591759	F-element	9	437	6.5	7.0	6.8	1.2	471	chr3R	17591288	intergenic	not near genes	chr3R	17591524	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_9_17590001	chr3R_17590001	D4-c1
2019	chr3R	17638319	17638321	chr3R	17638806	17638808	roo	4	487	0.0	1.0	0.5	2.7	489	chr3R	17638319	intron	CG43175 +	chr3R	17638564	intron	CG43175 +	chr3R	17638808	intron,5` UTR	CG43175 +,CR45222 +	chr3R_4_17635001	chr3R_17635001	D4-c1
2025	chr3R	17925850	17925889	chr3R	17927318	17927357	hobo	13	1468	6.0	7.0	6.5	1.7	1507	chr3R	17925850	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927357	intron	cpo +	chr3R_13_17925001	chr3R_17925001	D4-c1
2027	chr3R	18032783	18032800	chr3R	18040457	18040474	opus	10	7674	1.0	5.0	3.0	2.5	7691	chr3R	18032783	intergenic	not near genes	chr3R	18036628	intergenic	not near genes	chr3R	18040474	intergenic	not near genes	chr3R_10_18035001	chr3R_18035001	D4-c1
2041	chr3R	18606508	18606534	chr3R	18610740	18610767	F-element	9	4233	3.5	3.0	3.2	2.1	4259	chr3R	18606508	intron,intron	qin +,CG14304 -	chr3R	18608638	intron,intron	qin +,CG14304 -	chr3R	18610767	intron,intron	qin +,CG14304 -	chr3R_9_18605001	chr3R_18605001	D4-c1
2065	chr3R	20156690	20156721	chr3R	20165861	20165892	roo	8	9170	3.5	6.0	4.8	1.4	9202	chr3R	20156690	intergenic	not near genes	chr3R	20161291	intergenic	not near genes	chr3R	20165892	intergenic	not near genes	chr3R_8_20160001	chr3R_20160001	D4-c1
2066	chr3R	20330997	20331029	chr3R	20331484	20331516	roo	10	487	2.0	4.0	3.0	2.5	519	chr3R	20330997	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331516	intergenic	not near genes	chr3R_10_20330001	chr3R_20330001	D4-c1
2076	chr3R	20854472	20854518	chr3R	20859268	20859309	Doc	11	4792	1.0	4.0	2.5	3.1	4837	chr3R	20854472	intron	Ir93a -	chr3R	20856890	intron	Ir93a -	chr3R	20859309	exon	Ir93a -	chr3R_11_20855001	chr3R_20855001	D4-c1
2084	chr3R	21141682	21141704	chr3R	21150160	21150186	Tirant	11	8481	3.5	10.0	6.8	1.4	8504	chr3R	21141682	intron	SNF4Agamma +	chr3R	21145934	intron	SNF4Agamma +	chr3R	21150186	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	D4-c1
2100	chr3R	21761117	21761155	chr3R	21768510	21768543	mdg1	23	7391	6.5	5.0	5.8	3.4	7426	chr3R	21761117	exon	CG42335 +	chr3R	21764830	intron	CG42335 +	chr3R	21768543	exon	CG42335 +	chr3R_23_21760001	chr3R_21760001	D4-c1
2117	chr3R	22234683	22234714	chr3R	22236003	22236034	pogo	18	1319	1.5	4.5	3.0	4.5	1351	chr3R	22234683	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_18_22235001	chr3R_22235001	D4-c1
2118	chr3R	22239489	22239502	chr3R	22248550	22248563	roo	5	9061	9.5	0.0	4.8	0.9	9074	chr3R	22239489	intron	SKIP +	chr3R	22244026	intron	SKIP +	chr3R	22248563	intron	SKIP +	chr3R_5_22240001	chr3R_22240001	D4-c1
2124	chr3R	22450540	22450579	chr3R	22453181	22453220	NOF	14	2640	4.5	4.5	4.5	2.5	2680	chr3R	22450540	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453220	intron	CG34376 +	chr3R_14_22450001	chr3R_22450001	D4-c1
2134	chr3R	22881192	22881217	chr3R	22884899	22884924	Doc	11	3707	6.0	2.0	4.0	2.2	3732	chr3R	22881192	intergenic	not near genes	chr3R	22883058	intergenic	not near genes	chr3R	22884924	intergenic	not near genes	chr3R_11_22880001	chr3R_22880001	D4-c1
2146	chr3R	23558406	23558425	chr3R	23560188	23560207	Bari1	8	1781	2.5	9.0	5.8	1.2	1801	chr3R	23558406	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560207	intron	beat-IV +	chr3R_8_23555001	chr3R_23555001	D4-c1
2150	chr3R	23684696	23684729	chr3R	23685181	23685204	roo	26	486	8.0	10.5	9.2	2.5	508	chr3R	23684696	exon	CG18754 +	chr3R	23684950	intron	CG18754 +	chr3R	23685204	exon	CG18754 +	chr3R_26_23680001	chr3R_23680001	D4-c1
2153	chr3R	23835407	23835424	chr3R	23844558	23844575	roo	4	9151	8.5	0.0	4.2	0.8	9168	chr3R	23835407	intron	CG34355 +	chr3R	23839991	intron	CG34355 +	chr3R	23844575	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	D4-c1
2159	chr3R	24072082	24072095	chr3R	24072521	24072534	jockey	8	439	19.0	0.0	9.5	0.8	452	chr3R	24072082	intron	4EHP -	chr3R	24072308	intron	4EHP -	chr3R	24072534	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	D4-c1
2160	chr3R	24076917	24076944	chr3R	24078385	24078412	hobo	12	1468	5.5	6.0	5.8	1.8	1495	chr3R	24076917	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078412	intron	4EHP -	chr3R_12_24075001	chr3R_24075001	D4-c1
2164	chr3R	24207219	24207245	chr3R	24212296	24212322	flea	12	5077	11.0	9.5	10.2	1.1	5103	chr3R	24207219	intron	twin -	chr3R	24209770	intron	twin -	chr3R	24212322	intron	twin -	chr3R_12_24205001	chr3R_24205001	D4-c1
2166	chr3R	24730089	24730110	chr3R	24732468	24732489	Doc	10	2379	3.0	0.5	1.8	3.6	2400	chr3R	24730089	intron	tok +	chr3R	24731289	intron	tok +	chr3R	24732489	intron	tok +	chr3R_10_24730001	chr3R_24730001	D4-c1
2167	chr3R	24927126	24927154	chr3R	24931914	24931946	Doc	11	4792	5.5	2.5	4.0	2.2	4820	chr3R	24927126	intergenic	Trf4-2 +	chr3R	24929536	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	D4-c1
2174	chr3R	25725832	25725857	chr3R	25734991	25735018	roo	7	9161	2.5	5.5	4.0	1.4	9186	chr3R	25725832	intron	LpR2 -	chr3R	25730425	intron	LpR2 -	chr3R	25735018	intron	LpR2 -	chr3R_7_25730001	chr3R_25730001	D4-c1
2177	chr3R	25832693	25832723	chr3R	25841876	25841906	roo	13	9183	4.0	8.5	6.2	1.8	9213	chr3R	25832693	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_13_25835001	chr3R_25835001	D4-c1
2184	chr3R	26108825	26108841	chr3R	26117409	26117425	Tirant	9	8583	4.5	0.0	2.2	2.8	8600	chr3R	26108825	5` UTR	CG31324 +	chr3R	26113125	intron	CG31324 +	chr3R	26117425	intron	CG31324 +	chr3R_9_26110001	chr3R_26110001	D4-c1
2188	chr3R	26376325	26376356	chr3R	26385486	26385517	roo	18	9157	3.5	0.0	1.8	6.4	9192	chr3R	26376325	intergenic	not near genes	chr3R	26380921	intergenic	not near genes	chr3R	26385517	intergenic	not near genes	chr3R_18_26380001	chr3R_26380001	D4-c1
2192	chr3R	26510521	26510534	chr3R	26519577	26519590	roo	6	9056	3.0	3.5	3.2	1.4	9069	chr3R	26510521	intron	plum -	chr3R	26515056	intron	plum -	chr3R	26519590	intron,5` UTR	plum -,CR45226 +	chr3R_6_26515001	chr3R_26515001	D4-c1
2194	chr3R	26558325	26558360	chr3R	26565639	26565672	Stalker4	15	7312	3.0	4.0	3.5	3.3	7347	chr3R	26558325	intron	scrib +	chr3R	26561998	intron	scrib +	chr3R	26565672	intron	scrib +	chr3R_15_26560001	chr3R_26560001	D4-c1
2197	chr3R	26642729	26642760	chr3R	26643123	26643154	jockey	13	394	7.5	5.0	6.2	1.8	425	chr3R	26642729	intergenic	not near genes	chr3R	26642942	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_13_26640001	chr3R_26640001	D4-c1
2201	chr3R	26810551	26810579	chr3R	26811037	26811065	roo	8	486	4.0	7.0	5.5	1.2	514	chr3R	26810551	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811065	intron	Tl +	chr3R_8_26810001	chr3R_26810001	D4-c1
2206	chr3R	27007409	27007438	chr3R	27016545	27016574	roo	9	9134	3.0	6.0	4.5	1.6	9165	chr3R	27007409	intron	RYa-R +	chr3R	27011992	intron	RYa-R +	chr3R	27016574	intron	RYa-R +	chr3R_9_27010001	chr3R_27010001	D4-c1
2210	chr3R	27140512	27140548	chr3R	27148123	27148159	412	14	7611	7.5	5.0	6.2	1.9	7647	chr3R	27140512	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148159	intron	CG6051 -	chr3R_14_27140001	chr3R_27140001	D4-c1
2212	chr3R	27342790	27342826	chr3R	27351372	27351408	Tirant	19	8582	4.5	7.0	5.8	2.8	8618	chr3R	27342790	intron	CG42534 +	chr3R	27347099	intron	CG42534 +	chr3R	27351408	intron	CG42534 +	chr3R_19_27345001	chr3R_27345001	D4-c1
2216	chr3R	27521154	27521188	chr3R	27530364	27530398	roo	13	9210	6.5	4.5	5.5	2.0	9244	chr3R	27521154	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530398	intron	CG12885 +	chr3R_13_27525001	chr3R_27525001	D4-c1
2221	chr3R	27725565	27725597	chr3R	27731008	27731040	I-element	13	5443	5.0	7.5	6.2	1.8	5475	chr3R	27725565	intergenic	not near genes	chr3R	27728302	intergenic	not near genes	chr3R	27731040	intergenic	not near genes	chr3R_13_27725001	chr3R_27725001	D4-c1
2224	chr3R	27856756	27856792	chr3R	27858240	27858276	hopper2	15	1484	6.5	3.0	4.8	2.6	1520	chr3R	27856756	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858276	intron	CG34353 -	chr3R_15_27855001	chr3R_27855001	D4-c1
2225	chr3R	27862952	27862981	chr3R	27868258	27868287	Transpac	7	5306	4.5	5.5	5.0	1.2	5335	chr3R	27862952	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868287	intron	CG34353 -	chr3R_7_27865001	chr3R_27865001	D4-c1
2226	chr3R	27875699	27875733	chr3R	27882755	27882789	297	14	7056	3.0	5.5	4.2	2.7	7090	chr3R	27875699	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882789	intron	CG34353 -	chr3R_14_27875001	chr3R_27875001	D4-c1
2229	chr3R	28068501	28068527	chr3R	28073944	28073969	I-element	13	5442	2.5	7.0	4.8	2.2	5468	chr3R	28068501	intron	CG34362 +	chr3R	28071235	intron	CG34362 +	chr3R	28073969	intron	CG34362 +	chr3R_13_28070001	chr3R_28070001	D4-c1
2230	chr3R	28173670	28173704	chr3R	28181101	28181135	mdg1	16	7431	0.5	3.0	1.8	5.7	7465	chr3R	28173670	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181135	intron	CG34354 +	chr3R_16_28175001	chr3R_28175001	D4-c1
2231	chr3R	28253337	28253370	chr3R	28255848	28255881	jockey	21	2511	1.5	7.5	4.5	3.8	2544	chr3R	28253337	intergenic	not near genes	chr3R	28254609	intergenic	not near genes	chr3R	28255881	intergenic	not near genes	chr3R_21_28250001	chr3R_28250001	D4-c1
2232	chr3R	28302099	28302133	chr3R	28302539	28302569	jockey	15	440	6.5	2.0	4.2	2.9	470	chr3R	28302099	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302569	intergenic	not near genes	chr3R_15_28300001	chr3R_28300001	D4-c1
2245	chr3R	28758284	28758298	chr3R	28763902	28763916	roo	8	5618	6.0	0.0	3.0	2.0	5632	chr3R	28758284	intergenic	aqrs -	chr3R	28761100	intergenic	not near genes	chr3R	28763916	intergenic	not near genes	chr3R_8_28760001	chr3R_28760001	D4-c1
2246	chr3R	28763901	28763917	chr3R	28771345	28771361	Stalker4	4	7444	0.0	1.5	0.8	2.2	7460	chr3R	28763901	intergenic	not near genes	chr3R	28767631	intergenic	not near genes	chr3R	28771361	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	D4-c1
2247	chr3R	28792872	28792899	chr3R	28797968	28797994	jockey	13	5096	4.0	3.5	3.8	2.7	5122	chr3R	28792872	intergenic	not near genes	chr3R	28795433	intergenic	not near genes	chr3R	28797994	intergenic	not near genes	chr3R_13_28795001	chr3R_28795001	D4-c1
2252	chr3R	29079398	29079408	chr3R	29080771	29080781	NOF	6	1373	0.0	4.0	2.0	2.0	1383	chr3R	29079398	intron	CG11873 +	chr3R	29080090	intron	CG11873 +	chr3R	29080781	intron	CG11873 +	chr3R_6_29080001	chr3R_29080001	D4-c1
2258	chr3R	29319823	29319857	chr3R	29320143	29320177	jockey	12	320	1.0	2.0	1.5	4.8	354	chr3R	29319823	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320177	intergenic	not near genes	chr3R_12_29320001	chr3R_29320001	D4-c1
2262	chr3R	29406616	29406646	chr3R	29407900	29407933	jockey	21	1286	4.5	7.0	5.8	3.1	1317	chr3R	29406616	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407933	intron	Ptp99A +	chr3R_21_29405001	chr3R_29405001	D4-c1
2275	chr3R	29738272	29738301	chr3R	29739740	29739769	hobo	10	1468	3.0	6.5	4.8	1.7	1497	chr3R	29738272	intergenic	CG1969 +,CG7598 +	chr3R	29739020	intron	CG1969 +	chr3R	29739769	5` UTR	CG1969 +	chr3R_10_29735001	chr3R_29735001	D4-c1
2277	chr3R	29760361	29760390	chr3R	29761563	29761592	pogo	12	1202	2.5	5.5	4.0	2.4	1231	chr3R	29760361	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761592	intergenic	not near genes	chr3R_12_29760001	chr3R_29760001	D4-c1
2279	chr3R	29882017	29882050	chr3R	29891175	29891208	roo	12	9158	2.0	7.0	4.5	2.2	9191	chr3R	29882017	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891208	intron	CG31038 +	chr3R_12_29885001	chr3R_29885001	D4-c1
2284	chr3R	30084853	30084880	chr3R	30086321	30086348	hobo	14	1468	1.5	4.0	2.8	3.7	1495	chr3R	30084853	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086348	intron	sima +	chr3R_14_30085001	chr3R_30085001	D4-c1
2285	chr3R	30084882	30084882	chr3R	30086316	30086350	hobo	4	1458	1.5	3.5	2.5	1.1	1468	chr3R	30084882	intron	sima +	chr3R	30085616	intron	sima +	chr3R	30086350	intron	sima +	chr3R_4_30085001	chr3R_30085001	D4-c1
2289	chr3R	30238764	30238796	chr3R	30239929	30239961	1360	9	1165	2.0	0.5	1.2	4.1	1197	chr3R	30238764	intergenic	not near genes	chr3R	30239362	intergenic	not near genes	chr3R	30239961	intergenic	not near genes	chr3R_9_30235001	chr3R_30235001	D4-c1
2291	chr3R	30317326	30317359	chr3R	30324919	30324952	roo	10	7593	2.0	5.5	3.8	2.1	7626	chr3R	30317326	intron	hdc +	chr3R	30321139	intron	hdc +	chr3R	30324952	intron	hdc +	chr3R_10_30320001	chr3R_30320001	D4-c1
2293	chr3R	30396215	30396245	chr3R	30404482	30404512	roo	8	8267	4.0	6.5	5.2	1.3	8297	chr3R	30396215	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_8_30400001	chr3R_30400001	D4-c1
2296	chr3R	30480471	30480512	chr3R	30482940	30482981	jockey	22	2468	3.0	4.0	3.5	4.9	2510	chr3R	30480471	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_22_30480001	chr3R_30480001	D4-c1
2302	chr3R	30679538	30679551	chr3R	30686986	30687021	blood	6	7466	3.5	4.5	4.0	1.2	7483	chr3R	30679538	intergenic	not near genes	chr3R	30683280	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	D4-c1
2304	chr3R	30818808	30818846	chr3R	30820374	30820412	1360	15	1566	7.5	5.5	6.5	2.0	1604	chr3R	30818808	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820412	intron	cindr +	chr3R_15_30815001	chr3R_30815001	D4-c1
2307	chr3R	31279370	31279409	chr3R	31285562	31285588	diver	17	6191	4.5	7.5	6.0	2.4	6218	chr3R	31279370	intergenic	not near genes	chr3R	31282479	intergenic	not near genes	chr3R	31285588	intergenic	not near genes	chr3R_17_31280001	chr3R_31280001	D4-c1
2309	chr3R	31413088	31413123	chr3R	31418289	31418324	copia	14	5200	2.5	0.0	1.2	6.4	5236	chr3R	31413088	intron	Gprk2 +	chr3R	31415706	intron	Gprk2 +	chr3R	31418324	intron	Gprk2 +	chr3R_14_31415001	chr3R_31415001	D4-c1
2313	chr3R	31691529	31691563	chr3R	31696296	31696330	Doc	18	4767	7.5	4.5	6.0	2.6	4801	chr3R	31691529	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696330	intergenic	not near genes	chr3R_18_31690001	chr3R_31690001	D4-c1
2322	chr3R	31997994	31998024	chr3R	32005465	32005495	blood	15	7471	4.5	7.5	6.0	2.1	7501	chr3R	31997994	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005495	intron	heph -	chr3R_15_32000001	chr3R_32000001	D4-c1
2324	chr4	76492	76517	chr4	81936	81961	I-element	9	5444	7.5	3.0	5.2	1.5	5469	chr4	76492	intron	pan +	chr4	79226	intron	pan +	chr4	81961	intron	pan +	chr4_9_75001	chr4_75001	D4-c1
2325	chr4	319996	320021	chr4	328173	328197	Stalker2	6	8177	5.0	4.5	4.8	1.0	8201	chr4	319996	3` UTR	CG32850 +	chr4	324096	intron	CG32850 +	chr4	328197	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_6_320001	chr4_320001	D4-c1
2326	chr4	671602	671635	chr4	680186	680219	Tirant	24	8582	4.5	7.0	5.8	3.5	8617	chr4	671602	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_24_675001	chr4_675001	D4-c1
2329	chrX	428425	428452	chrX	434611	434638	3S18	12	6185	4.0	2.5	3.2	2.9	6213	chrX	428425	intron	CG32816 -	chrX	431532	intron	CG32816 -	chrX	434638	intron	CG32816 -	chrX_12_430001	chrX_430001	D4-c1
2330	chrX	827615	827625	chrX	835408	835418	roo	4	7793	3.0	2.5	2.8	1.1	7803	chrX	827615	intron	CG43867 -	chrX	831516	intron	CG43867 -	chrX	835418	intron	CG43867 -	chrX_4_830001	chrX_830001	D4-c1
2331	chrX	906700	906732	chrX	908490	908522	S-element	14	1790	4.0	11.5	7.8	1.6	1822	chrX	906700	intron	CG43867 -	chrX	907611	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_14_905001	chrX_905001	D4-c1
2332	chrX	1627972	1627998	chrX	1635441	1635467	gtwin	9	7468	2.5	3.0	2.8	2.4	7495	chrX	1627972	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_9_1630001	chrX_1630001	D4-c1
2333	chrX	2399836	2399869	chrX	2408190	2408223	roo	14	8354	6.0	4.5	5.2	2.3	8387	chrX	2399836	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408223	intergenic	not near genes	chrX_14_2400001	chrX_2400001	D4-c1
2335	chrX	2664388	2664412	chrX	2665535	2665559	1360	8	1147	2.5	6.0	4.2	1.5	1171	chrX	2664388	intron	sgg +	chrX	2664974	intron	sgg +	chrX	2665559	intron	sgg +	chrX_8_2660001	chrX_2660001	D4-c1
2336	chrX	2844899	2844932	chrX	2852310	2852343	mdg1	6	7411	3.0	2.5	2.8	1.6	7444	chrX	2844899	intron	kirre +	chrX	2848621	intron	kirre +	chrX	2852343	intron	kirre +	chrX_6_2845001	chrX_2845001	D4-c1
2339	chrX	3058023	3058050	chrX	3058265	3058292	pogo	5	242	1.5	1.0	1.2	2.3	269	chrX	3058023	intron	kirre +	chrX	3058158	intron	kirre +	chrX	3058292	intron	kirre +	chrX_5_3055001	chrX_3055001	D4-c1
2349	chrX	3597549	3597582	chrX	3619718	3619751	roo	7	22169	2.5	2.0	2.2	2.2	22202	chrX	3597549	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_7_3605001	chrX_3605001	D4-c1
2352	chrX	3726760	3726796	chrX	3730158	3730194	NOF	9	3398	3.0	0.0	1.5	3.6	3434	chrX	3726760	intron	tlk +	chrX	3728477	intron	tlk +	chrX	3730194	intron	tlk +	chrX_9_3725001	chrX_3725001	D4-c1
2357	chrX	3986861	3986893	chrX	3994495	3994527	412	9	7634	6.0	3.0	4.5	1.6	7666	chrX	3986861	intergenic	not near genes	chrX	3990694	intergenic	not near genes	chrX	3994527	intergenic	not near genes	chrX_9_3990001	chrX_3990001	D4-c1
2368	chrX	4792377	4792393	chrX	4792811	4792827	jockey	6	434	8.0	4.0	6.0	0.9	450	chrX	4792377	intergenic	not near genes	chrX	4792602	intergenic	not near genes	chrX	4792827	intergenic	not near genes	chrX_6_4790001	chrX_4790001	D4-c1
2369	chrX	4827966	4828000	chrX	4835338	4835372	Stalker4	9	7367	5.0	2.5	3.8	1.9	7406	chrX	4827966	intergenic	not near genes	chrX	4831669	intergenic	not near genes	chrX	4835372	intergenic	not near genes	chrX_9_4830001	chrX_4830001	D4-c1
2374	chrX	5096273	5096304	chrX	5103839	5103870	springer	8	7566	3.0	6.0	4.5	1.5	7597	chrX	5096273	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103870	intron,intron	CG15465 +,rg +	chrX_8_5100001	chrX_5100001	D4-c1
2376	chrX	5338709	5338719	chrX	5339963	5339973	jockey	4	1254	4.0	5.0	4.5	0.7	1264	chrX	5338709	intergenic	not near genes	chrX	5339341	intergenic	not near genes	chrX	5339973	intergenic	SK +	chrX_4_5335001	chrX_5335001	D4-c1
2379	chrX	5481066	5481082	chrX	5485035	5485051	I-element	5	3969	3.5	4.0	3.8	1.0	3985	chrX	5481066	intron	SPR +	chrX	5483058	intron	SPR +	chrX	5485051	intron	SPR +	chrX_5_5480001	chrX_5480001	D4-c1
2382	chrX	5716046	5716068	chrX	5744259	5744281	Doc	6	28213	22.5	16.0	19.2	0.3	28235	chrX	5716046	intron	CG33080 -	chrX	5730164	intron	CG32758 -	chrX	5744281	intron	IntS6 -	chrX_6_5730001	chrX_5730001	D4-c1
2383	chrX	6335215	6335236	chrX	6337726	6337747	Tirant	5	2511	0.5	1.5	1.0	2.5	2532	chrX	6335215	intergenic	not near genes	chrX	6336481	intergenic	not near genes	chrX	6337747	intergenic	CG3842 +	chrX_5_6335001	chrX_6335001	D4-c1
2388	chrX	6562819	6562847	chrX	6571302	6571330	Tirant	8	8483	4.5	3.5	4.0	1.6	8511	chrX	6562819	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571330	intron	CG34417 +	chrX_8_6565001	chrX_6565001	D4-c1
2390	chrX	6605477	6605502	chrX	6608500	6608525	Burdock	5	3023	2.0	1.0	1.5	2.0	3048	chrX	6605477	intron	pigs +	chrX	6607001	intron	pigs +	chrX	6608525	intron	pigs +	chrX_5_6605001	chrX_6605001	D4-c1
2395	chrX	7125245	7125274	chrX	7134405	7134434	roo	5	9160	1.5	1.0	1.2	2.3	9189	chrX	7125245	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134434	intergenic	not near genes	chrX_5_7125001	chrX_7125001	D4-c1
2401	chrX	8031426	8031461	chrX	8035736	8035771	Juan	8	4310	5.0	3.0	4.0	1.6	4345	chrX	8031426	intergenic	not near genes	chrX	8033598	intergenic	not near genes	chrX	8035771	3` UTR	CG2233 -	chrX_8_8030001	chrX_8030001	D4-c1
2402	chrX	8364850	8364880	chrX	8365248	8365295	BS	4	406	2.5	0.0	1.2	1.8	445	chrX	8364850	intron	nAChRalpha3 -	chrX	8365072	intron	nAChRalpha3 -	chrX	8365295	intron	nAChRalpha3 -	chrX_4_8365001	chrX_8365001	D4-c1
2406	chrX	8922327	8922349	chrX	8922762	8922784	jockey	6	431	6.0	4.5	5.2	1.0	457	chrX	8922327	intron	rdgA +	chrX	8922556	intron	rdgA +	chrX	8922784	intron	rdgA +	chrX_6_8920001	chrX_8920001	D4-c1
2407	chrX	8927579	8927608	chrX	8929850	8929879	NOF	6	2268	6.0	2.0	4.0	1.2	2300	chrX	8927579	intron	rdgA +	chrX	8928729	intron	rdgA +	chrX	8929879	intron	rdgA +	chrX_6_8925001	chrX_8925001	D4-c1
2408	chrX	8948771	8948792	chrX	8956282	8956303	roo	5	7511	1.5	5.0	3.2	1.2	7532	chrX	8948771	intron	rdgA +	chrX	8952537	intron	rdgA +	chrX	8956303	intron	rdgA +	chrX_5_8950001	chrX_8950001	D4-c1
2415	chrX	9508131	9508167	chrX	9509650	9509686	jockey	10	1518	2.0	2.5	2.2	3.1	1555	chrX	9508131	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509686	intron	CG32700 -	chrX_10_9505001	chrX_9505001	D4-c1
2416	chrX	9575788	9575824	chrX	9576113	9576149	mdg3	14	324	4.5	7.5	6.0	2.0	361	chrX	9575788	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576149	intron,5` UTR	CG32699 -,CG42395 -	chrX_14_9575001	chrX_9575001	D4-c1
2425	chrX	10267309	10267335	chrX	10276460	10276486	roo	4	9151	0.5	0.5	0.5	2.7	9177	chrX	10267309	3` UTR	alpha-Man-I -	chrX	10271898	intron	alpha-Man-I -	chrX	10276486	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	D4-c1
2428	chrX	10550854	10550881	chrX	10552322	10552349	hobo	4	1468	2.0	2.0	2.0	1.3	1495	chrX	10550854	intron	spri -	chrX	10551602	intron	spri -	chrX	10552349	intron	spri -	chrX_4_10550001	chrX_10550001	D4-c1
2430	chrX	10686051	10686084	chrX	10691189	10691222	roo	11	5138	1.5	7.0	4.2	2.1	5171	chrX	10686051	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691222	intron	X11Lbeta +	chrX_11_10685001	chrX_10685001	D4-c1
2435	chrX	11096001	11096021	chrX	11103103	11103124	HMS-Beagle	6	7103	2.5	2.5	2.5	1.7	7123	chrX	11096001	intergenic	not near genes	chrX	11099562	intergenic	not near genes	chrX	11103124	intron	CG42249 +	chrX_6_11095001	chrX_11095001	D4-c1
2436	chrX	11184247	11184280	chrX	11189325	11189357	flea	4	5079	2.5	3.0	2.8	1.1	5110	chrX	11184247	intergenic	not near genes	chrX	11186802	intergenic	not near genes	chrX	11189357	intergenic	not near genes	chrX_4_11185001	chrX_11185001	D4-c1
2438	chrX	11194449	11194458	chrX	11201870	11201880	gypsy5	4	7422	2.5	5.0	3.8	0.8	7431	chrX	11194449	intergenic	not near genes	chrX	11198164	intergenic	not near genes	chrX	11201880	intergenic	CG11106 +	chrX_4_11195001	chrX_11195001	D4-c1
2440	chrX	11268562	11268567	chrX	11270055	11270061	hopper2	4	1494	5.5	5.0	5.2	0.6	1499	chrX	11268562	intron	CG44422 -	chrX	11269312	intron	CG44422 -	chrX	11270061	intron	CG44422 -	chrX_4_11265001	chrX_11265001	D4-c1
2441	chrX	11312054	11312089	chrX	11319408	11319443	Stalker2	8	7354	2.0	3.0	2.5	2.3	7389	chrX	11312054	intergenic	not near genes	chrX	11315748	intergenic	not near genes	chrX	11319443	intergenic	not near genes	chrX_8_11315001	chrX_11315001	D4-c1
2445	chrX	11535038	11535043	chrX	11541509	11541514	Burdock	4	6471	7.0	1.0	4.0	0.8	6476	chrX	11535038	intron	Drak +	chrX	11538276	intron	Drak +	chrX	11541514	intron	Drak +	chrX_4_11535001	chrX_11535001	D4-c1
2446	chrX	11633418	11633448	chrX	11640473	11640503	297	6	7055	2.5	4.0	3.2	1.4	7085	chrX	11633418	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_6_11635001	chrX_11635001	D4-c1
2447	chrX	11645113	11645138	chrX	11648283	11648309	NOF	4	3170	0.5	2.5	1.5	1.6	3196	chrX	11645113	intron	Ptp10D +	chrX	11646711	intron	Ptp10D +	chrX	11648309	intron	Ptp10D +	chrX_4_11645001	chrX_11645001	D4-c1
2450	chrX	12168139	12168160	chrX	12173582	12173602	I-element	5	5443	2.5	2.0	2.2	1.6	5463	chrX	12168139	intron	Ten-a +	chrX	12170870	intron	Ten-a +	chrX	12173602	intron	Ten-a +	chrX_5_12170001	chrX_12170001	D4-c1
2458	chrX	12930600	12930610	chrX	12937717	12937727	HMS-Beagle	4	7117	5.0	5.0	5.0	0.7	7127	chrX	12930600	intron	fne +	chrX	12934164	intron	fne +	chrX	12937727	intron	fne +	chrX_4_12930001	chrX_12930001	D4-c1
2466	chrX	13429483	13429495	chrX	13430606	13430645	jockey	6	1146	2.5	1.5	2.0	2.0	1162	chrX	13429483	intergenic	not near genes	chrX	13430064	intergenic	not near genes	chrX	13430645	intergenic	not near genes	chrX_6_13430001	chrX_13430001	D4-c1
2468	chrX	13463644	13463654	chrX	13469222	13469232	mdg3	4	5578	6.5	3.5	5.0	0.7	5588	chrX	13463644	intron	Neto +	chrX	13466438	intron	Neto +	chrX	13469232	intron	Neto +	chrX_4_13465001	chrX_13465001	D4-c1
2474	chrX	14105020	14105055	chrX	14114172	14114207	roo	10	9150	4.5	3.5	4.0	2.0	9187	chrX	14105020	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114207	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	D4-c1
2479	chrX	14636470	14636496	chrX	14641912	14641938	I-element	8	5441	2.5	5.0	3.8	1.7	5468	chrX	14636470	intron	NetA -	chrX	14639204	intron	NetA -	chrX	14641938	intron	NetA -	chrX_8_14635001	chrX_14635001	D4-c1
2481	chrX	14778035	14778061	chrX	14782833	14782859	Doc	9	4798	2.5	6.0	4.2	1.7	4824	chrX	14778035	intergenic	CG5347 +	chrX	14780447	intergenic	not near genes	chrX	14782859	intergenic	Ag5r2 -	chrX_9_14780001	chrX_14780001	D4-c1
2482	chrX	14818766	14818794	chrX	14823971	14823999	copia	5	5205	5.5	4.5	5.0	0.8	5233	chrX	14818766	intron	rut -	chrX	14821382	intron	rut -	chrX	14823999	intron	rut -	chrX_5_14820001	chrX_14820001	D4-c1
2483	chrX	14936857	14936889	chrX	14946115	14946147	roo	9	9258	4.0	3.5	3.8	1.9	9290	chrX	14936857	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946147	intron	pdgy -	chrX_9_14940001	chrX_14940001	D4-c1
2488	chrX	15273700	15273737	chrX	15274868	15274904	1360	11	1168	4.5	3.5	4.0	2.2	1204	chrX	15273700	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274904	intergenic	not near genes	chrX_11_15270001	chrX_15270001	D4-c1
2490	chrX	15413051	15413082	chrX	15417354	15417381	Juan	9	4303	5.5	4.5	5.0	1.5	4330	chrX	15413051	intron	Cngl -	chrX	15415216	intron	Cngl -	chrX	15417381	intron	Cngl -	chrX_9_15415001	chrX_15415001	D4-c1
2492	chrX	15435698	15435705	chrX	15436132	15436139	rover	5	434	0.5	8.0	4.2	1.0	441	chrX	15435698	intron	Cngl -	chrX	15435918	intron	Cngl -	chrX	15436139	intron	Cngl -	chrX_5_15435001	chrX_15435001	D4-c1
2502	chrX	16492647	16492674	chrX	16498225	16498252	mdg3	10	5578	4.0	3.5	3.8	2.1	5605	chrX	16492647	intron	para -	chrX	16495450	intron	para -	chrX	16498252	intron	para -	chrX_10_16495001	chrX_16495001	D4-c1
2509	chrX	16936003	16936026	chrX	16936422	16936445	jockey	5	419	0.0	2.5	1.2	2.3	442	chrX	16936003	intron	CG4928 +	chrX	16936224	intron	CG4928 +	chrX	16936445	intron	CG4928 +	chrX_5_16935001	chrX_16935001	D4-c1
2528	chrX	18194068	18194094	chrX	18194604	18194624	BS	6	535	2.5	2.5	2.5	1.7	556	chrX	18194068	intron	Frq2 +	chrX	18194346	intron	Frq2 +	chrX	18194624	intron	Frq2 +	chrX_6_18190001	chrX_18190001	D4-c1
2531	chrX	18429493	18429525	chrX	18434805	18434837	Transpac	4	5312	4.5	3.0	3.8	0.8	5344	chrX	18429493	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434837	intergenic	not near genes	chrX_4_18430001	chrX_18430001	D4-c1
2544	chrX	19060409	19060436	chrX	19065191	19065221	Doc	9	4785	1.0	0.5	0.8	5.0	4812	chrX	19060409	intron	CG14190 +	chrX	19062815	intron	CG14190 +	chrX	19065221	intron	CG14190 +	chrX_9_19060001	chrX_19060001	D4-c1
2553	chrX	19136553	19136583	chrX	19143472	19143503	412	6	6920	2.0	5.0	3.5	1.3	6950	chrX	19136553	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143503	3` UTR	RhoGAP18B -	chrX_6_19140001	chrX_19140001	D4-c1
2558	chrX	19356985	19357014	chrX	19358427	19358456	NOF	5	1442	2.5	0.0	1.2	2.3	1471	chrX	19356985	intron	kek5 +	chrX	19357720	intron	kek5 +	chrX	19358456	intron	kek5 +	chrX_5_19355001	chrX_19355001	D4-c1
2559	chrX	19380156	19380185	chrX	19380398	19380426	pogo	8	242	2.5	1.0	1.8	2.9	270	chrX	19380156	intron	kek5 +	chrX	19380291	intron	kek5 +	chrX	19380426	intron	kek5 +	chrX_8_19380001	chrX_19380001	D4-c1
2561	chrX	19472118	19472155	chrX	19472689	19472726	jockey	4	571	2.0	3.0	2.5	1.1	608	chrX	19472118	intergenic	kek5 +	chrX	19472422	intergenic	not near genes	chrX	19472726	intergenic	not near genes	chrX_4_19470001	chrX_19470001	D4-c1
2562	chrX	19710070	19710103	chrX	19711857	19711890	S-element	10	1787	2.0	2.5	2.2	3.1	1820	chrX	19710070	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711890	intron	meso18E -	chrX_10_19710001	chrX_19710001	D4-c1
2578	chrX	20377329	20377349	chrX	20378797	20378817	hobo	8	1468	1.5	6.5	4.0	1.6	1488	chrX	20377329	intergenic	not near genes	chrX	20378073	intergenic	not near genes	chrX	20378817	intergenic	not near genes	chrX_8_20375001	chrX_20375001	D4-c1
2582	chrX	20504128	20504152	chrX	20505650	20505674	transib2	9	1522	0.5	3.5	2.0	3.0	1546	chrX	20504128	intron	RhoGAP19D -	chrX	20504901	intron	RhoGAP19D -	chrX	20505674	intron	RhoGAP19D -	chrX_9_20500001	chrX_20500001	D4-c1
2592	chrX	20836724	20836758	chrX	20844327	20844361	roo	6	7603	2.5	2.0	2.2	1.9	7637	chrX	20836724	intron	shakB -	chrX	20840542	intron	shakB -	chrX	20844361	intron	shakB -	chrX_6_20840001	chrX_20840001	D4-c1
2593	chrX	20940718	20940746	chrX	20942188	20942216	hobo	6	1470	3.5	1.5	2.5	1.7	1498	chrX	20940718	intergenic	not near genes	chrX	20941467	intergenic	not near genes	chrX	20942216	intergenic	not near genes	chrX_6_20940001	chrX_20940001	D4-c1
2597	chrX	21061880	21061895	chrX	21062367	21062382	roo	4	487	0.5	4.0	2.2	1.2	502	chrX	21061880	intron	bves +	chrX	21062131	intron	bves +	chrX	21062382	intron,3` UTR	bves +,CG32512 -	chrX_4_21060001	chrX_21060001	D4-c1
2599	chrX	21086138	21086162	chrX	21087168	21087192	jockey	4	1030	0.5	2.5	1.5	1.6	1054	chrX	21086138	intergenic	not near genes	chrX	21086665	intergenic	not near genes	chrX	21087192	intergenic	not near genes	chrX_4_21085001	chrX_21085001	D4-c1
2612	chrX	21458692	21458724	chrX	21464129	21464161	Ivk	10	5437	1.5	4.0	2.8	2.6	5469	chrX	21458692	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464161	intergenic	not near genes	chrX_10_21460001	chrX_21460001	D4-c1
2613	chrX	21474408	21474433	chrX	21474775	21474800	1731	7	367	2.5	4.0	3.2	1.7	392	chrX	21474408	intergenic	not near genes	chrX	21474604	intergenic	not near genes	chrX	21474800	intergenic	not near genes	chrX_7_21470001	chrX_21470001	D4-c1
2616	chrX	22522635	22522655	chrX	22525456	22525476	NOF	7	2821	2.5	4.5	3.5	1.6	2841	chrX	22522635	intron	CG17600 +	chrX	22524056	intron	CG17600 +	chrX	22525476	intron	CG17600 +	chrX_7_22520001	chrX_22520001	D4-c1
2620	chrX	22697495	22697521	chrX	22701791	22701819	Juan	9	4298	4.0	3.5	3.8	1.9	4324	chrX	22697495	intron	CR44997 +	chrX	22699657	intron	CR44997 +	chrX	22701819	intron	CR44997 +	chrX_9_22695001	chrX_22695001	D4-c1
2621	chrX	22771510	22771539	chrX	22774802	22774831	297	11	3292	3.0	2.0	2.5	3.1	3321	chrX	22771510	intron	CR44997 +	chrX	22773170	intron	CR44997 +	chrX	22774831	intron	CR44997 +	chrX_11_22770001	chrX_22770001	D4-c1
2624	chrX	22811991	22812005	chrX	22816764	22816778	F-element	5	4773	6.0	4.0	5.0	0.8	4787	chrX	22811991	intergenic	CG12446 -	chrX	22814384	intergenic	not near genes	chrX	22816778	intergenic	not near genes	chrX_5_22810001	chrX_22810001	D4-c1
2628	chrX	22908987	22908993	chrX	22913213	22913219	Burdock	5	4226	1.5	0.0	0.8	2.8	4232	chrX	22908987	intergenic	not near genes	chrX	22911103	intergenic	not near genes	chrX	22913219	intergenic	not near genes	chrX_5_22910001	chrX_22910001	D4-c1
2632	chrY	1431368	1431373	chrY	1447405	1447410	Doc	4	16036	9.5	5.0	7.2	0.5	16042	chrY	1431368	intergenic	not near genes	chrY	1439389	intergenic	not near genes	chrY	1447410	intergenic	not near genes	chrY_4_1435001	chrY_1435001	D4-c1