SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47442	47473	chr2L	52570	52603	jockey	5	5130	7.0	4.5	5.8	0.7	5161	chr2L	47442	intron	Cda5 -	chr2L	50022	intron	Cda5 -	chr2L	52603	intron	Cda5 -	chr2L_5_50001	chr2L_50001	D20-c5
5	chr2L	347863	347918	chr2L	355388	355443	blood	10	7524	1.0	2.0	1.5	4.0	7580	chr2L	347863	3` UTR	Plc21C +	chr2L	351653	intron	Plc21C +	chr2L	355443	3` UTR	Plc21C +	chr2L_10_350001	chr2L_350001	D20-c5
13	chr2L	770444	770490	chr2L	772249	772286	Bari1	14	1804	4.0	2.0	3.0	3.5	1842	chr2L	770444	intergenic	not near genes	chr2L	771365	intergenic	not near genes	chr2L	772286	intergenic	CR44614 +	chr2L_14_770001	chr2L_770001	D20-c5
25	chr2L	1570669	1570705	chr2L	1573566	1573598	F-element	8	2896	3.5	3.5	3.5	1.8	2929	chr2L	1570669	intron	haf +	chr2L	1572134	intron	haf +	chr2L	1573598	intron	haf +	chr2L_8_1570001	chr2L_1570001	D20-c5
31	chr2L	1711335	1711385	chr2L	1711684	1711734	mdg3	5	349	5.0	3.0	4.0	1.0	399	chr2L	1711335	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711534	3` UTR	frtz -	chr2L	1711734	3` UTR	frtz -	chr2L_5_1710001	chr2L_1710001	D20-c5
36	chr2L	2100396	2100405	chr2L	2109528	2109579	roo	8	9164	3.0	4.0	3.5	1.8	9183	chr2L	2100396	intron	dpr3 -	chr2L	2104988	intron	dpr3 -	chr2L	2109579	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	D20-c5
37	chr2L	2112109	2112143	chr2L	2119773	2119830	opus	7	7682	3.5	4.5	4.0	1.4	7721	chr2L	2112109	intergenic	not near genes	chr2L	2115970	intergenic	not near genes	chr2L	2119830	intergenic	not near genes	chr2L_7_2115001	chr2L_2115001	D20-c5
42	chr2L	2294022	2294068	chr2L	2299252	2299288	copia	10	5228	2.5	2.5	2.5	2.9	5266	chr2L	2294022	intergenic	not near genes	chr2L	2296655	intergenic	not near genes	chr2L	2299288	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	D20-c5
47	chr2L	2565525	2565554	chr2L	2571612	2571652	297	5	6087	1.5	2.0	1.8	1.8	6127	chr2L	2565525	exon	Cyp309a2 -	chr2L	2568588	intron	Cyp309a2 -	chr2L	2571652	exon	Cyp309a2 -	chr2L_5_2565001	chr2L_2565001	D20-c5
52	chr2L	2661184	2661230	chr2L	2663047	2663071	I-element	8	1859	1.5	7.0	4.2	1.5	1887	chr2L	2661184	intergenic	not near genes	chr2L	2662128	intergenic	not near genes	chr2L	2663071	intergenic	not near genes	chr2L_8_2660001	chr2L_2660001	D20-c5
56	chr2L	2772585	2772620	chr2L	2779194	2779229	297	5	6607	4.5	3.0	3.8	1.0	6644	chr2L	2772585	3` UTR	Syt1 -	chr2L	2775907	intron	Syt1 -	chr2L	2779229	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	D20-c5
67	chr2L	3202718	3202763	chr2L	3210172	3210217	mdg1	6	7454	2.0	1.0	1.5	2.4	7499	chr2L	3202718	intergenic	not near genes	chr2L	3206468	intergenic	not near genes	chr2L	3210217	intergenic	CR45336 +	chr2L_6_3205001	chr2L_3205001	D20-c5
69	chr2L	3251484	3251511	chr2L	3259072	3259101	springer	4	7590	2.0	4.0	3.0	1.0	7617	chr2L	3251484	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259101	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	D20-c5
85	chr2L	5827688	5827733	chr2L	5836721	5836766	roo	6	9033	0.5	0.5	0.5	4.0	9078	chr2L	5827688	intron	TrissinR +	chr2L	5832227	intron	TrissinR +	chr2L	5836766	intron	TrissinR +	chr2L_6_5830001	chr2L_5830001	D20-c5
99	chr2L	6363147	6363181	chr2L	6366098	6366132	Burdock	10	2950	1.0	2.0	1.5	4.0	2985	chr2L	6363147	intergenic	not near genes	chr2L	6364640	intergenic	not near genes	chr2L	6366132	intergenic	not near genes	chr2L_10_6360001	chr2L_6360001	D20-c5
100	chr2L	6426832	6426884	chr2L	6445117	6445169	roo	11	18285	1.5	3.0	2.2	3.4	18337	chr2L	6426832	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445169	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	D20-c5
122	chr2L	7977067	7977110	chr2L	7984065	7984109	297	9	6997	2.0	5.0	3.5	2.0	7042	chr2L	7977067	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984109	intron,5` UTR	Snoo -,CG7231 +	chr2L_9_7980001	chr2L_7980001	D20-c5
128	chr2L	8452397	8452434	chr2L	8461593	8461630	roo	6	9192	2.5	1.5	2.0	2.0	9233	chr2L	8452397	intron	fu12 -	chr2L	8457014	intron	fu12 -	chr2L	8461630	intron	fu12 -	chr2L_6_8455001	chr2L_8455001	D20-c5
131	chr2L	8594456	8594490	chr2L	8601519	8601569	297	6	7076	3.0	2.0	2.5	1.7	7113	chr2L	8594456	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598012	intron	Sema-1a +	chr2L	8601569	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	D20-c5
132	chr2L	8723108	8723130	chr2L	8731510	8731532	Tirant	4	8402	5.0	3.0	4.0	0.8	8424	chr2L	8723108	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731532	intron	raw -	chr2L_4_8725001	chr2L_8725001	D20-c5
138	chr2L	9000268	9000293	chr2L	9007803	9007827	roo	8	7534	4.5	0.5	2.5	2.3	7559	chr2L	9000268	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007827	intergenic	not near genes	chr2L_8_9000001	chr2L_9000001	D20-c5
142	chr2L	9217950	9217969	chr2L	9222762	9222781	Doc	5	4812	2.0	4.0	3.0	1.2	4831	chr2L	9217950	intron	tai +	chr2L	9220366	intron	tai +	chr2L	9222781	intron	tai +	chr2L_5_9220001	chr2L_9220001	D20-c5
143	chr2L	9217974	9217987	chr2L	9222750	9222799	Doc	5	4804	1.5	3.0	2.2	1.6	4825	chr2L	9217974	intron	tai +	chr2L	9220386	intron	tai +	chr2L	9222799	intron	tai +	chr2L_5_9220001	chr2L_9220001	D20-c5
156	chr2L	9973702	9973754	chr2L	9980846	9980898	HMS-Beagle	14	7143	5.5	0.5	3.0	3.5	7196	chr2L	9973702	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980898	intergenic	not near genes	chr2L_14_9975001	chr2L_9975001	D20-c5
166	chr2L	10592831	10592867	chr2L	10600504	10600554	opus	4	7684	0.5	0.5	0.5	2.7	7723	chr2L	10592831	intron	Trim9 +	chr2L	10596692	intron	Trim9 +	chr2L	10600554	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	D20-c5
172	chr2L	10862846	10862864	chr2L	10864485	10864503	Rt1c	5	1639	2.5	7.5	5.0	0.8	1657	chr2L	10862846	3` UTR	CR43807 -	chr2L	10863674	intron	CR43807 -	chr2L	10864503	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	D20-c5
175	chr2L	10946930	10946972	chr2L	10956166	10956212	roo	12	9236	5.5	2.5	4.0	2.4	9282	chr2L	10946930	intron	dpr2 -	chr2L	10951571	intron	dpr2 -	chr2L	10956212	intron	dpr2 -	chr2L_12_10950001	chr2L_10950001	D20-c5
185	chr2L	11563617	11563654	chr2L	11568846	11568883	copia	4	5229	2.0	3.5	2.8	1.1	5266	chr2L	11563617	intergenic	not near genes	chr2L	11566250	intergenic	not near genes	chr2L	11568883	intergenic	not near genes	chr2L_4_11565001	chr2L_11565001	D20-c5
203	chr2L	12558297	12558353	chr2L	12565450	12565506	HMS-Beagle	5	7153	0.0	0.5	0.2	4.2	7209	chr2L	12558297	intergenic	not near genes	chr2L	12561902	intergenic	not near genes	chr2L	12565506	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	D20-c5
205	chr2L	12728906	12728939	chr2L	12729170	12729193	pogo	6	262	4.5	2.5	3.5	1.3	287	chr2L	12728906	intron	MRP +	chr2L	12729050	intron	MRP +	chr2L	12729193	exon	MRP +	chr2L_6_12725001	chr2L_12725001	D20-c5
206	chr2L	12731034	12731075	chr2L	12735825	12735867	F-element	7	4790	3.5	5.5	4.5	1.3	4833	chr2L	12731034	intron	MRP +	chr2L	12733450	intron	MRP +	chr2L	12735867	intron	MRP +	chr2L_7_12730001	chr2L_12730001	D20-c5
207	chr2L	12739155	12739195	chr2L	12743961	12743999	Doc	5	4805	5.0	2.5	3.8	1.0	4844	chr2L	12739155	exon	MRP +	chr2L	12741577	intron	MRP +	chr2L	12743999	exon	MRP +	chr2L_5_12740001	chr2L_12740001	D20-c5
209	chr2L	12781785	12781815	chr2L	12789259	12789290	Quasimodo	5	7474	4.5	3.5	4.0	1.0	7505	chr2L	12781785	intergenic	not near genes	chr2L	12785538	intergenic	not near genes	chr2L	12789290	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	D20-c5
210	chr2L	12791607	12791621	chr2L	12795307	12795321	F-element	4	3698	2.0	1.0	1.5	1.6	3714	chr2L	12791607	intergenic	not near genes	chr2L	12793464	intergenic	not near genes	chr2L	12795321	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	D20-c5
214	chr2L	12861677	12861711	chr2L	12863169	12863203	hobo	6	1492	4.5	1.0	2.8	1.6	1526	chr2L	12861677	intergenic	not near genes	chr2L	12862440	intergenic	not near genes	chr2L	12863203	intergenic	not near genes	chr2L_6_12860001	chr2L_12860001	D20-c5
216	chr2L	12894007	12894049	chr2L	12895499	12895541	hobo	10	1492	2.5	2.0	2.2	3.1	1534	chr2L	12894007	intergenic	not near genes	chr2L	12894774	intergenic	not near genes	chr2L	12895541	intergenic	not near genes	chr2L_10_12890001	chr2L_12890001	D20-c5
217	chr2L	12933827	12933878	chr2L	12941319	12941369	blood	14	7492	2.5	1.5	2.0	4.7	7542	chr2L	12933827	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941369	intergenic	not near genes	chr2L_14_12935001	chr2L_12935001	D20-c5
226	chr2L	13405627	13405673	chr2L	13410446	13410495	Doc	6	4821	4.0	2.0	3.0	1.5	4868	chr2L	13405627	exon	CG7110 +	chr2L	13408061	intron	CG7110 +	chr2L	13410495	intron	CG7110 +	chr2L_6_13405001	chr2L_13405001	D20-c5
227	chr2L	13449443	13449490	chr2L	13456904	13456951	Quasimodo	4	7461	2.5	2.5	2.5	1.1	7508	chr2L	13449443	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453197	intron	CG42784 +	chr2L	13456951	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	D20-c5
228	chr2L	13481433	13481461	chr2L	13482065	13482093	jockey	11	631	2.5	2.5	2.5	3.1	660	chr2L	13481433	intron	CG42784 +	chr2L	13481763	intron	CG42784 +	chr2L	13482093	intron	CG42784 +	chr2L_11_13480001	chr2L_13480001	D20-c5
230	chr2L	13761788	13761825	chr2L	13762924	13762961	Doc	6	1135	3.0	1.5	2.2	1.9	1173	chr2L	13761788	intron	TM9SF4 +	chr2L	13762374	intron	TM9SF4 +	chr2L	13762961	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	D20-c5
239	chr2L	14642568	14642598	chr2L	14651746	14651786	roo	5	9184	3.0	3.5	3.2	1.2	9218	chr2L	14642568	intron	osp -	chr2L	14647177	intron	osp -	chr2L	14651786	intron	osp -	chr2L_5_14645001	chr2L_14645001	D20-c5
242	chr2L	14803854	14803904	chr2L	14809082	14809132	copia	8	5227	2.0	0.5	1.2	3.6	5278	chr2L	14803854	intergenic	not near genes	chr2L	14806493	intergenic	not near genes	chr2L	14809132	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	D20-c5
245	chr2L	14889934	14889957	chr2L	14890384	14890407	jockey	7	450	2.5	3.0	2.8	1.8	473	chr2L	14889934	intergenic	not near genes	chr2L	14890170	intergenic	not near genes	chr2L	14890407	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	D20-c5
246	chr2L	14984370	14984383	chr2L	14991981	14991994	opus	4	7611	2.5	2.0	2.2	1.2	7624	chr2L	14984370	intron	mol -	chr2L	14988182	intron	mol -	chr2L	14991994	intron	mol -	chr2L_4_14985001	chr2L_14985001	D20-c5
258	chr2L	15586386	15586434	chr2L	15593463	15593511	297	7	7076	2.5	1.0	1.8	2.5	7125	chr2L	15586386	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593511	intergenic	not near genes	chr2L_7_15585001	chr2L_15585001	D20-c5
260	chr2L	15826874	15826887	chr2L	15829293	15829306	Tabor	5	2418	0.5	1.0	0.8	2.8	2432	chr2L	15826874	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829306	intergenic	not near genes	chr2L_5_15825001	chr2L_15825001	D20-c5
267	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	55	145889	16.5	14.0	15.2	3.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_55_16140001	chr2L_16140001	D20-c5
268	chr2L	16141159	16141184	chr2L	16146390	16146414	copia	4	5231	1.0	2.0	1.5	1.6	5255	chr2L	16141159	intergenic	not near genes	chr2L	16143786	intergenic	not near genes	chr2L	16146414	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	D20-c5
269	chr2L	16153710	16153747	chr2L	16160789	16160826	297	8	7079	5.0	4.5	4.8	1.4	7116	chr2L	16153710	intergenic	not near genes	chr2L	16157268	intergenic	not near genes	chr2L	16160826	intergenic	not near genes	chr2L_8_16155001	chr2L_16155001	D20-c5
272	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	26	145889	16.5	14.0	15.2	1.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_26_16140001	chr2L_16140001	D20-c5
274	chr2L	16280245	16280286	chr2L	16281427	16281474	1360	8	1191	2.5	3.0	2.8	2.1	1229	chr2L	16280245	intron	crp -	chr2L	16280860	intron	crp -	chr2L	16281474	intron	crp -	chr2L_8_16280001	chr2L_16280001	D20-c5
288	chr2L	17167546	17167579	chr2L	17167811	17167844	pogo	4	265	2.5	1.0	1.8	1.4	298	chr2L	17167546	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167695	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167844	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	D20-c5
291	chr2L	17273177	17273225	chr2L	17277982	17277989	F-element	5	4798	0.0	5.5	2.8	1.3	4812	chr2L	17273177	intergenic	not near genes	chr2L	17275583	intergenic	not near genes	chr2L	17277989	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	D20-c5
295	chr2L	17687507	17687520	chr2L	17692277	17692290	F-element	5	4770	0.5	2.5	1.5	2.0	4783	chr2L	17687507	intron	CadN -	chr2L	17689898	intron	CadN -	chr2L	17692290	intron	CadN -	chr2L_5_17685001	chr2L_17685001	D20-c5
297	chr2L	17727852	17727872	chr2L	17729344	17729364	hobo	4	1492	2.0	3.5	2.8	1.1	1512	chr2L	17727852	intron	CadN -	chr2L	17728608	intron	CadN -	chr2L	17729364	intron	CadN -	chr2L_4_17725001	chr2L_17725001	D20-c5
298	chr2L	17911937	17911983	chr2L	17914148	17914186	pogo	8	2206	7.0	3.5	5.2	1.3	2249	chr2L	17911937	intergenic	not near genes	chr2L	17913062	intergenic	not near genes	chr2L	17914186	intergenic	CG43271 -	chr2L_8_17910001	chr2L_17910001	D20-c5
299	chr2L	17951925	17951953	chr2L	17953411	17953445	hobo	6	1490	3.5	1.0	2.2	1.9	1520	chr2L	17951925	intergenic	CR44398 -,CR44397 -	chr2L	17952685	intergenic	not near genes	chr2L	17953445	intergenic	not near genes	chr2L_6_17950001	chr2L_17950001	D20-c5
321	chr2L	19147347	19147395	chr2L	19154407	19154454	297	6	7060	2.5	2.0	2.2	1.9	7107	chr2L	19147347	intron	brat +	chr2L	19150900	intron	brat +	chr2L	19154454	intron	brat +	chr2L_6_19150001	chr2L_19150001	D20-c5
330	chr2L	19620076	19620117	chr2L	19621088	19621129	jockey	12	1013	4.0	0.5	2.2	3.8	1053	chr2L	19620076	intron	Lar +	chr2L	19620602	intron	Lar +	chr2L	19621129	intron	Lar +	chr2L_12_19620001	chr2L_19620001	D20-c5
331	chr2L	19703518	19703565	chr2L	19712679	19712726	roo	6	9160	3.5	1.5	2.5	1.7	9208	chr2L	19703518	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712726	intron	Lar +	chr2L_6_19705001	chr2L_19705001	D20-c5
332	chr2L	19737372	19737388	chr2L	19740822	19740838	1360	5	3476	7.0	4.0	5.5	0.8	3466	chr2L	19737372	intergenic	Nf-YB +	chr2L	19739105	intergenic	not near genes	chr2L	19740838	intergenic	not near genes	chr2L_5_19735001	chr2L_19735001	D20-c5
334	chr2L	19762824	19762832	chr2L	19763060	19763099	pogo	5	261	2.0	4.0	3.0	1.2	275	chr2L	19762824	intron	fbp -	chr2L	19762962	intron	fbp -	chr2L	19763099	intron	fbp -	chr2L_5_19760001	chr2L_19760001	D20-c5
340	chr2L	20272111	20272140	chr2L	20282838	20282876	copia	6	10734	2.5	3.0	2.8	1.6	10765	chr2L	20272111	intergenic	not near genes	chr2L	20277494	intergenic	not near genes	chr2L	20282876	intergenic	not near genes	chr2L_6_20275001	chr2L_20275001	D20-c5
342	chr2L	20372203	20372234	chr2L	20372469	20372500	pogo	5	265	0.5	2.5	1.5	2.0	297	chr2L	20372203	intergenic	Ugt37a1 -	chr2L	20372352	intergenic	Ugt37a1 -	chr2L	20372500	exon	Ugt37a1 -	chr2L_5_20370001	chr2L_20370001	D20-c5
344	chr2L	20568641	20568674	chr2L	20569056	20569073	X-element	5	411	1.0	2.0	1.5	2.0	432	chr2L	20568641	intron	CR45347 +	chr2L	20568857	intron	CR45347 +	chr2L	20569073	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	D20-c5
345	chr2L	20576206	20576240	chr2L	20583699	20583733	blood	7	7493	2.0	1.5	1.8	2.5	7527	chr2L	20576206	intergenic	CR45347 +	chr2L	20579970	intergenic	not near genes	chr2L	20583733	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	D20-c5
351	chr2L	20901470	20901476	chr2L	20902658	20902664	1360	8	1188	3.0	3.5	3.2	1.9	1194	chr2L	20901470	intron,intron	CG43739 -,sky -	chr2L	20902067	intron,intron	CG43739 -,sky -	chr2L	20902664	intron,intron	CG43739 -,sky -	chr2L_8_20900001	chr2L_20900001	D20-c5
356	chr2L	21020256	21020280	chr2L	21023958	21023982	NOF	7	3701	2.5	4.0	3.2	1.7	3726	chr2L	21020256	intron	CG42238 -	chr2L	21022119	intron	CG42238 -	chr2L	21023982	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	D20-c5
357	chr2L	21020286	21020305	chr2L	21023952	21024007	NOF	5	3693	1.5	3.5	2.5	1.4	3721	chr2L	21020286	intron	CG42238 -	chr2L	21022146	intron	CG42238 -	chr2L	21024007	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	D20-c5
364	chr2L	21347527	21347575	chr2L	21355024	21355069	blood	5	7496	0.5	0.5	0.5	3.3	7542	chr2L	21347527	intron	Tsp39D +	chr2L	21351298	intron	Tsp39D +	chr2L	21355069	intron	Tsp39D +	chr2L_5_21350001	chr2L_21350001	D20-c5
367	chr2L	21691809	21691829	chr2L	21698304	21698324	Burdock	5	6494	3.0	0.0	1.5	2.0	6515	chr2L	21691809	intron	CG31619 +	chr2L	21695066	intron	CG31619 +	chr2L	21698324	intron	CG31619 +	chr2L_5_21695001	chr2L_21695001	D20-c5
377	chr2L	21981679	21981707	chr2L	21990848	21990896	roo	8	9187	3.5	3.0	3.2	1.9	9217	chr2L	21981679	exon	CG2528 -	chr2L	21986288	intron	CG2528 -	chr2L	21990896	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	D20-c5
380	chr2L	22258595	22258645	chr2L	22260744	22260794	G6	4	2140	1.0	4.5	2.8	1.1	2199	chr2L	22258595	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260794	intergenic	not near genes	chr2L_4_22255001	chr2L_22255001	D20-c5
384	chr2R	469940	469975	chr2R	473206	473238	F-element	5	3264	5.0	0.0	2.5	1.4	3298	chr2R	469940	intergenic	not near genes	chr2R	471589	intergenic	not near genes	chr2R	473238	intergenic	not near genes	chr2R_5_470001	chr2R_470001	D20-c5
385	chr2R	552744	552787	chr2R	553987	554025	1360	6	1230	7.0	9.0	8.0	0.7	1281	chr2R	552744	intron	CG40378 +	chr2R	553384	intron	CG40378 +	chr2R	554025	intron	CG40378 +	chr2R_6_550001	chr2R_550001	D20-c5
386	chr2R	1082365	1082380	chr2R	1087164	1087181	Doc	5	4800	6.0	8.5	7.2	0.6	4816	chr2R	1082365	intron	rl +	chr2R	1084773	intron	rl +	chr2R	1087181	intron	rl +	chr2R_5_1080001	chr2R_1080001	D20-c5
387	chr2R	1516583	1516602	chr2R	1521336	1521355	1731	8	4753	12.5	10.0	11.2	0.7	4772	chr2R	1516583	exon	Maf1 -	chr2R	1518969	intron	Maf1 -	chr2R	1521355	5` UTR	Maf1 -	chr2R_8_1515001	chr2R_1515001	D20-c5
389	chr2R	2110485	2110496	chr2R	2118068	2118078	17.6	6	7582	12.0	10.5	11.2	0.5	7593	chr2R	2110485	intron	CG17684 -	chr2R	2114282	intron	CG17684 -	chr2R	2118078	intron	CG17684 -	chr2R_6_2110001	chr2R_2110001	D20-c5
390	chr2R	2498965	2498989	chr2R	2508137	2508161	roo	4	9172	2.5	1.0	1.8	1.4	9196	chr2R	2498965	intron	MFS17 -	chr2R	2503563	intron	MFS17 -	chr2R	2508161	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	D20-c5
393	chr2R	3144092	3144108	chr2R	3393386	3393411	Doc	4	249300	8.5	14.5	11.5	0.3	249319	chr2R	3144092	intron	CG42596 +	chr2R	3268752	intergenic	not near genes	chr2R	3393411	intergenic	not near genes	chr2R_4_3265001	chr2R_3265001	D20-c5
396	chr2R	4750351	4750374	chr2R	4751533	4751555	1360	6	1180	1.5	5.5	3.5	1.3	1204	chr2R	4750351	intron	conu +	chr2R	4750953	intron	conu +	chr2R	4751555	intron	conu +	chr2R_6_4750001	chr2R_4750001	D20-c5
398	chr2R	4838849	4838898	chr2R	4840397	4840446	transib2	11	1548	4.0	1.0	2.5	3.1	1597	chr2R	4838849	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840446	intergenic	not near genes	chr2R_11_4835001	chr2R_4835001	D20-c5
413	chr2R	5417979	5418022	chr2R	5420636	5420677	Burdock	6	2657	2.5	1.5	2.0	2.0	2698	chr2R	5417979	intron	laccase2 +	chr2R	5419328	intron	laccase2 +	chr2R	5420677	intron	laccase2 +	chr2R_6_5415001	chr2R_5415001	D20-c5
420	chr2R	6096699	6096741	chr2R	6101920	6101964	BS	10	5221	0.5	4.5	2.5	2.9	5265	chr2R	6096699	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101964	intron	EcR -	chr2R_10_6095001	chr2R_6095001	D20-c5
422	chr2R	6494512	6494527	chr2R	6499297	6499314	F-element	5	4786	6.0	3.0	4.5	0.9	4802	chr2R	6494512	intergenic	not near genes	chr2R	6496913	intergenic	not near genes	chr2R	6499314	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	D20-c5
432	chr2R	7196557	7196589	chr2R	7201357	7201389	F-element	6	4799	1.0	1.5	1.2	2.7	4832	chr2R	7196557	intron	pk +	chr2R	7198973	intron	pk +	chr2R	7201389	intron	pk +	chr2R_6_7195001	chr2R_7195001	D20-c5
433	chr2R	7235818	7235844	chr2R	7240932	7240953	jockey	6	5113	3.5	6.0	4.8	1.0	5135	chr2R	7235818	intergenic	not near genes	chr2R	7238386	intergenic	not near genes	chr2R	7240953	intergenic	not near genes	chr2R_6_7235001	chr2R_7235001	D20-c5
435	chr2R	7434874	7434902	chr2R	7439200	7439228	Juan	7	4325	0.5	1.5	1.0	3.5	4354	chr2R	7434874	intergenic	so +	chr2R	7437051	intergenic	not near genes	chr2R	7439228	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	D20-c5
436	chr2R	7608392	7608442	chr2R	7613620	7613669	I-element	5	5227	0.5	0.0	0.2	4.2	5277	chr2R	7608392	intron	CG1358 -	chr2R	7611030	intron	CG1358 -	chr2R	7613669	intron	CG1358 -	chr2R_5_7610001	chr2R_7610001	D20-c5
440	chr2R	7815649	7815701	chr2R	7822143	7822151	Burdock	5	6485	2.0	1.5	1.8	1.8	6502	chr2R	7815649	intergenic	CG1882 +	chr2R	7818900	intergenic	not near genes	chr2R	7822151	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	D20-c5
441	chr2R	7862207	7862251	chr2R	7867346	7867389	flea	4	5139	5.5	1.0	3.2	1.0	5182	chr2R	7862207	intron	Dgk -	chr2R	7864798	intron	Dgk -	chr2R	7867389	intron	Dgk -	chr2R_4_7860001	chr2R_7860001	D20-c5
442	chr2R	7869169	7869220	chr2R	7873980	7874015	Doc	13	4809	2.5	4.0	3.2	3.1	4846	chr2R	7869169	intron	Dgk -	chr2R	7871592	intron	Dgk -	chr2R	7874015	intron	Dgk -	chr2R_13_7870001	chr2R_7870001	D20-c5
450	chr2R	8160915	8160940	chr2R	8161030	8161055	1360	4	115	10.0	14.0	12.0	0.3	140	chr2R	8160915	exon	CG8708 -	chr2R	8160985	intron	CG8708 -	chr2R	8161055	intron	CG8708 -	chr2R_4_8160001	chr2R_8160001	D20-c5
452	chr2R	8330835	8330888	chr2R	8331346	8331399	roo	5	511	3.5	0.5	2.0	1.7	564	chr2R	8330835	intron	pdm3 +	chr2R	8331117	intron	pdm3 +	chr2R	8331399	intron	pdm3 +	chr2R_5_8330001	chr2R_8330001	D20-c5
453	chr2R	8398192	8398241	chr2R	8402997	8403047	Doc	18	4805	6.5	6.5	6.5	2.4	4855	chr2R	8398192	intron	CG2121 -	chr2R	8400620	intron	CG2121 -	chr2R	8403047	intron	CG2121 -	chr2R_18_8400001	chr2R_8400001	D20-c5
454	chr2R	8416302	8416309	chr2R	8417151	8417158	I-element	4	849	7.5	6.5	7.0	0.5	856	chr2R	8416302	intergenic	not near genes	chr2R	8416730	intergenic	CG43296 -	chr2R	8417158	intergenic	CG43296 -	chr2R_4_8415001	chr2R_8415001	D20-c5
458	chr2R	8722739	8722793	chr2R	8723005	8723049	pogo	10	264	1.5	4.5	3.0	2.5	310	chr2R	8722739	intron	CG14767 -	chr2R	8722894	intron	CG14767 -	chr2R	8723049	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	D20-c5
463	chr2R	9151280	9151326	chr2R	9157774	9157814	Burdock	11	6493	4.5	1.0	2.8	2.9	6534	chr2R	9151280	exon	CG30345 +	chr2R	9154547	intergenic	not near genes	chr2R	9157814	intergenic	CG8008 -	chr2R_11_9150001	chr2R_9150001	D20-c5
464	chr2R	9212676	9212720	chr2R	9213183	9213231	roo	15	511	3.0	5.5	4.2	2.9	555	chr2R	9212676	intergenic	CR45309 +	chr2R	9212954	intergenic	CR45309 +	chr2R	9213231	5` UTR	CR45309 +	chr2R_15_9210001	chr2R_9210001	D20-c5
478	chr2R	9726611	9726634	chr2R	9734187	9734200	17.6	4	7574	1.0	4.0	2.5	1.1	7589	chr2R	9726611	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734200	intron	sqa -	chr2R_4_9730001	chr2R_9730001	D20-c5
479	chr2R	9871051	9871064	chr2R	9871560	9871560	roo	4	507	0.0	7.0	3.5	0.9	509	chr2R	9871051	intron	cbx -	chr2R	9871306	intron	cbx -	chr2R	9871560	intron,5` UTR	cbx -,CG18446 +	chr2R_4_9870001	chr2R_9870001	D20-c5
480	chr2R	9945418	9945445	chr2R	9945639	9945666	BS	4	221	2.0	0.5	1.2	1.8	248	chr2R	9945418	intron	Mef2 -	chr2R	9945542	intron	Mef2 -	chr2R	9945666	intron	Mef2 -	chr2R_4_9945001	chr2R_9945001	D20-c5
482	chr2R	10005826	10005867	chr2R	10007016	10007057	1360	7	1190	3.0	1.0	2.0	2.3	1231	chr2R	10005826	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007057	intron	Pka-R2 -	chr2R_7_10005001	chr2R_10005001	D20-c5
503	chr2R	11019863	11019904	chr2R	11024954	11024995	jockey	9	5091	3.0	2.5	2.8	2.4	5132	chr2R	11019863	intron	luna -	chr2R	11022429	intron	luna -	chr2R	11024995	intron	luna -	chr2R_9_11020001	chr2R_11020001	D20-c5
505	chr2R	11207821	11207846	chr2R	11208038	11208058	BS	4	216	1.0	3.5	2.2	1.2	237	chr2R	11207821	intron	shn +	chr2R	11207940	intron	shn +	chr2R	11208058	intron	shn +	chr2R_4_11205001	chr2R_11205001	D20-c5
509	chr2R	11472628	11472673	chr2R	11473850	11473895	pogo	6	1222	4.0	2.5	3.2	1.4	1267	chr2R	11472628	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473895	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	D20-c5
518	chr2R	12481144	12481163	chr2R	12482973	12482976	roo	5	1826	4.0	8.0	6.0	0.7	1832	chr2R	12481144	exon	Dh44-R2 +	chr2R	12482060	intron	Dh44-R2 +	chr2R	12482976	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	D20-c5
519	chr2R	12501671	12501717	chr2R	12503857	12503904	Rt1c	9	2186	0.0	5.0	2.5	2.6	2233	chr2R	12501671	intron	fdl -	chr2R	12502788	intron	fdl -	chr2R	12503904	intron	fdl -	chr2R_9_12500001	chr2R_12500001	D20-c5
526	chr2R	12707523	12707546	chr2R	12715913	12715937	roo	6	8391	1.0	1.0	1.0	3.0	8414	chr2R	12707523	intron	CG42663 +	chr2R	12711730	intron	CG42663 +	chr2R	12715937	intron	CG42663 +	chr2R_6_12710001	chr2R_12710001	D20-c5
528	chr2R	12789288	12789323	chr2R	12797667	12797711	roo	8	8387	2.5	1.0	1.8	2.9	8423	chr2R	12789288	intron,3` UTR	sca +,CR45137 -	chr2R	12793500	intron,intron	sca +,CR45137 -	chr2R	12797711	intron,3` UTR	sca +,CR45137 -	chr2R_8_12790001	chr2R_12790001	D20-c5
529	chr2R	12819434	12819477	chr2R	12824526	12824565	jockey	6	5088	5.5	5.5	5.5	0.9	5131	chr2R	12819434	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824565	intergenic	not near genes	chr2R_6_12820001	chr2R_12820001	D20-c5
535	chr2R	13136821	13136866	chr2R	13141644	13141675	Doc	9	4821	3.0	2.0	2.5	2.6	4854	chr2R	13136821	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141675	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	D20-c5
541	chr2R	13580487	13580520	chr2R	13580862	13580895	jockey	10	374	2.5	5.0	3.8	2.1	408	chr2R	13580487	3` UTR	CG6191 -	chr2R	13580691	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580895	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_10_13580001	chr2R_13580001	D20-c5
545	chr2R	13728111	13728164	chr2R	13735793	13735846	opus	6	7678	1.5	0.0	0.8	3.3	7735	chr2R	13728111	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735846	intron	fas +	chr2R_6_13730001	chr2R_13730001	D20-c5
548	chr2R	13905591	13905622	chr2R	13907598	13907628	Rt1a	9	2007	3.5	8.0	5.8	1.3	2037	chr2R	13905591	intron	shot -	chr2R	13906610	intron	shot -	chr2R	13907628	intron	shot -	chr2R_9_13905001	chr2R_13905001	D20-c5
550	chr2R	14394209	14394255	chr2R	14399023	14399035	Doc	5	4807	3.0	2.0	2.5	1.4	4826	chr2R	14394209	intergenic	not near genes	chr2R	14396622	intergenic	not near genes	chr2R	14399035	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	D20-c5
551	chr2R	14467287	14467309	chr2R	14476470	14476492	roo	5	9183	2.0	3.5	2.8	1.3	9205	chr2R	14467287	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476492	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	D20-c5
552	chr2R	14497367	14497414	chr2R	14498555	14498604	1360	4	1188	0.0	1.5	0.8	2.2	1237	chr2R	14497367	3` UTR	Cpsf160 -	chr2R	14497986	intron	Cpsf160 -	chr2R	14498604	3` UTR	Cpsf160 -	chr2R_4_14495001	chr2R_14495001	D20-c5
561	chr2R	15004714	15004760	chr2R	15005068	15005085	jockey	5	348	2.0	4.5	3.2	1.2	371	chr2R	15004714	intergenic	not near genes	chr2R	15004900	intergenic	not near genes	chr2R	15005085	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	D20-c5
564	chr2R	15119296	15119343	chr2R	15127802	15127847	Tirant	7	8505	2.0	0.5	1.2	3.2	8551	chr2R	15119296	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127847	intron	chn +	chr2R_7_15120001	chr2R_15120001	D20-c5
581	chr2R	16539621	16539661	chr2R	16544855	16544895	copia	4	5234	1.5	2.5	2.0	1.3	5274	chr2R	16539621	intergenic	not near genes	chr2R	16542258	intergenic	not near genes	chr2R	16544895	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	D20-c5
585	chr2R	17147230	17147264	chr2R	17152286	17152320	jockey	4	5052	4.0	2.5	3.2	1.0	5090	chr2R	17147230	intergenic	not near genes	chr2R	17149775	intergenic	not near genes	chr2R	17152320	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	D20-c5
592	chr2R	18045667	18045686	chr2R	18046040	18046063	jockey	6	374	0.5	2.5	1.5	2.4	396	chr2R	18045667	intergenic	not near genes	chr2R	18045865	intergenic	not near genes	chr2R	18046063	intergenic	CG5767 -	chr2R_6_18045001	chr2R_18045001	D20-c5
597	chr2R	18358389	18358415	chr2R	18372625	18372652	roo	4	14237	1.5	2.5	2.0	1.3	14263	chr2R	18358389	intergenic	not near genes	chr2R	18365520	intergenic	not near genes	chr2R	18372652	intergenic	not near genes	chr2R_4_18365001	chr2R_18365001	D20-c5
601	chr2R	18575776	18575830	chr2R	18581989	18582043	3S18	13	6205	4.5	4.5	4.5	2.4	6267	chr2R	18575776	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582043	intron	GEFmeso -	chr2R_13_18575001	chr2R_18575001	D20-c5
602	chr2R	18590845	18590893	chr2R	18600021	18600070	roo	8	9176	4.5	3.0	3.8	1.7	9225	chr2R	18590845	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600070	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	D20-c5
614	chr2R	19776570	19776626	chr2R	19779918	19779967	jockey	9	3347	1.5	2.5	2.0	3.0	3397	chr2R	19776570	intergenic	not near genes	chr2R	19778268	intergenic	not near genes	chr2R	19779967	intergenic	not near genes	chr2R_9_19775001	chr2R_19775001	D20-c5
617	chr2R	19914827	19914875	chr2R	19922261	19922303	mdg1	7	7435	2.5	3.0	2.8	1.8	7476	chr2R	19914827	intergenic	not near genes	chr2R	19918565	intergenic	not near genes	chr2R	19922303	intergenic	not near genes	chr2R_7_19915001	chr2R_19915001	D20-c5
620	chr2R	19957416	19957457	chr2R	19962643	19962684	copia	8	5226	2.0	3.0	2.5	2.3	5268	chr2R	19957416	intergenic	CG44623 +	chr2R	19960050	intergenic	not near genes	chr2R	19962684	intergenic	not near genes	chr2R_8_19960001	chr2R_19960001	D20-c5
622	chr2R	20069217	20069271	chr2R	20071872	20071926	opus	6	2650	2.0	3.5	2.8	1.6	2709	chr2R	20069217	intergenic	not near genes	chr2R	20070572	intergenic	not near genes	chr2R	20071926	intergenic	not near genes	chr2R_6_20070001	chr2R_20070001	D20-c5
625	chr2R	20739423	20739468	chr2R	20744213	20744261	F-element	11	4788	4.0	5.0	4.5	2.0	4838	chr2R	20739423	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744261	intron	dpr +	chr2R_11_20740001	chr2R_20740001	D20-c5
632	chr2R	21151104	21151137	chr2R	21153761	21153795	opus	4	2658	4.0	3.5	3.8	0.8	2691	chr2R	21151104	intron	CG30389 -	chr2R	21152450	intron	CG30389 -	chr2R	21153795	intron	CG30389 -	chr2R_4_21150001	chr2R_21150001	D20-c5
642	chr2R	21738285	21738297	chr2R	21747448	21747482	roo	4	9176	2.5	4.5	3.5	0.9	9197	chr2R	21738285	intergenic	not near genes	chr2R	21742884	intergenic	not near genes	chr2R	21747482	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	D20-c5
643	chr2R	21753065	21753115	chr2R	21753575	21753624	roo	6	510	1.5	3.5	2.5	1.7	559	chr2R	21753065	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753624	intergenic	not near genes	chr2R_6_21750001	chr2R_21750001	D20-c5
644	chr2R	21809526	21809548	chr2R	21817790	21817811	roo	4	8264	1.0	0.5	0.8	2.2	8285	chr2R	21809526	intergenic	not near genes	chr2R	21813668	intergenic	not near genes	chr2R	21817811	intergenic	not near genes	chr2R_4_21810001	chr2R_21810001	D20-c5
659	chr2R	22525724	22525734	chr2R	22529304	22529314	jockey	5	3580	5.0	2.0	3.5	1.1	3590	chr2R	22525724	intron	px -	chr2R	22527519	intron	px -	chr2R	22529314	intron	px -	chr2R_5_22525001	chr2R_22525001	D20-c5
660	chr2R	22525738	22525769	chr2R	22529302	22529349	jockey	4	3576	2.5	1.0	1.8	1.4	3611	chr2R	22525738	intron	px -	chr2R	22527544	intron	px -	chr2R	22529349	intron	px -	chr2R_4_22525001	chr2R_22525001	D20-c5
665	chr2R	22774946	22774983	chr2R	22775390	22775417	jockey	5	441	1.0	2.0	1.5	2.0	471	chr2R	22774946	intron	CG42260 -	chr2R	22775182	intron	CG42260 -	chr2R	22775417	intron	CG42260 -	chr2R_5_22775001	chr2R_22775001	D20-c5
674	chr2R	23529563	23529583	chr2R	23537164	23537184	412	4	7599	4.5	5.5	5.0	0.7	7621	chr2R	23529563	intron	bw -	chr2R	23533374	intron	bw -	chr2R	23537184	exon	bw -	chr2R_4_23530001	chr2R_23530001	D20-c5
675	chr2R	23529591	23529604	chr2R	23537155	23537204	412	4	7590	2.5	4.0	3.2	1.0	7613	chr2R	23529591	exon	bw -	chr2R	23533398	intron	bw -	chr2R	23537204	exon	bw -	chr2R_4_23530001	chr2R_23530001	D20-c5
683	chr2R	23914287	23914321	chr2R	23921935	23921970	412	12	7647	5.0	10.5	7.8	1.4	7683	chr2R	23914287	exon	kcc +	chr2R	23918128	intron	kcc +	chr2R	23921970	exon	kcc +	chr2R_12_23915001	chr2R_23915001	D20-c5
686	chr2R	24147043	24147091	chr2R	24154644	24154693	412	14	7601	5.0	3.5	4.2	2.7	7650	chr2R	24147043	intron	Dat +	chr2R	24150868	intron	Dat +	chr2R	24154693	intron	Dat +	chr2R_14_24150001	chr2R_24150001	D20-c5
687	chr2R	24177219	24177258	chr2R	24184728	24184768	412	5	7503	2.5	1.0	1.8	1.8	7549	chr2R	24177219	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184768	3` UTR	Nop60B +	chr2R_5_24180001	chr2R_24180001	D20-c5
694	chr2R	24647578	24647587	chr2R	24655158	24655169	412	4	7582	3.5	1.5	2.5	1.1	7591	chr2R	24647578	intergenic	not near genes	chr2R	24651374	intergenic	not near genes	chr2R	24655169	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	D20-c5
695	chr2R	24727886	24727913	chr2R	24735415	24735446	mdg1	9	7532	3.0	4.0	3.5	2.0	7560	chr2R	24727886	intron	Mid1 -	chr2R	24731666	intron	Mid1 -	chr2R	24735446	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	D20-c5
697	chr2R	24763595	24763617	chr2R	24765596	24765618	G2	7	2001	5.5	6.0	5.8	1.0	2023	chr2R	24763595	exon	CG3894 +	chr2R	24764606	intron	CG3894 +	chr2R	24765618	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	D20-c5
711	chr3L	110189	110236	chr3L	119381	119428	roo	9	9192	0.5	4.5	2.5	2.6	9239	chr3L	110189	intergenic	not near genes	chr3L	114808	intergenic	not near genes	chr3L	119428	intergenic	not near genes	chr3L_9_110001	chr3L_110001	D20-c5
714	chr3L	402663	402717	chr3L	409740	409795	297	32	7076	8.0	8.0	8.0	3.6	7132	chr3L	402663	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409795	intergenic	not near genes	chr3L_32_405001	chr3L_405001	D20-c5
721	chr3L	857973	858024	chr3L	866479	866519	Tirant	16	8504	5.0	4.5	4.8	2.8	8546	chr3L	857973	intergenic	not near genes	chr3L	862246	intergenic	not near genes	chr3L	866519	5` UTR	CG12502 +	chr3L_16_860001	chr3L_860001	D20-c5
723	chr3L	925155	925209	chr3L	932605	932657	mdg1	9	7450	2.0	3.5	2.8	2.4	7502	chr3L	925155	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932657	intron	Glut1 +	chr3L_9_925001	chr3L_925001	D20-c5
725	chr3L	939755	939789	chr3L	940901	940934	jockey	10	1145	4.5	2.0	3.2	2.4	1179	chr3L	939755	intron	Glut1 +	chr3L	940344	intron	Glut1 +	chr3L	940934	intron	Glut1 +	chr3L_10_940001	chr3L_940001	D20-c5
730	chr3L	1154117	1154154	chr3L	1163292	1163329	roo	4	9175	1.5	3.5	2.5	1.1	9212	chr3L	1154117	intron	bab2 -	chr3L	1158723	intron	bab2 -	chr3L	1163329	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	D20-c5
731	chr3L	1219570	1219621	chr3L	1227327	1227379	412	17	7757	7.0	3.5	5.2	2.7	7809	chr3L	1219570	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227379	intron	mwh +	chr3L_17_1220001	chr3L_1220001	D20-c5
735	chr3L	1485720	1485738	chr3L	1486912	1486930	1360	5	1190	6.5	8.5	7.5	0.6	1210	chr3L	1485720	intron	stet -	chr3L	1486325	intron	stet -	chr3L	1486930	intron	stet -	chr3L_5_1485001	chr3L_1485001	D20-c5
736	chr3L	1505975	1506024	chr3L	1513597	1513646	17.6	14	7621	6.0	4.0	5.0	2.3	7671	chr3L	1505975	intron,intron	Psa +,cue -	chr3L	1509810	intron,intron	Psa +,cue -	chr3L	1513646	intron,intron	Psa +,cue -	chr3L_14_1505001	chr3L_1505001	D20-c5
755	chr3L	2447480	2447531	chr3L	2456661	2456712	roo	16	9178	4.5	2.5	3.5	3.6	9232	chr3L	2447480	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456712	intron	CG45186 +	chr3L_16_2450001	chr3L_2450001	D20-c5
760	chr3L	2927820	2927855	chr3L	2936122	2936156	Tirant	5	8302	1.5	0.5	1.0	2.5	8336	chr3L	2927820	intron	Shab +	chr3L	2931988	intron	Shab +	chr3L	2936156	intron	Shab +	chr3L_5_2930001	chr3L_2930001	D20-c5
761	chr3L	3061262	3061293	chr3L	3069870	3069901	Tirant	5	8608	2.5	2.5	2.5	1.4	8639	chr3L	3061262	intron	CG32486 -	chr3L	3065582	intron	CG32486 -	chr3L	3069901	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	D20-c5
763	chr3L	3281421	3281435	chr3L	3281941	3281956	Doc	4	521	8.5	4.0	6.2	0.6	535	chr3L	3281421	intron	CG12017 +	chr3L	3281688	intron	CG12017 +	chr3L	3281956	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	D20-c5
764	chr3L	3281454	3281470	chr3L	3281940	3281991	Doc	8	512	5.5	4.0	4.8	1.4	537	chr3L	3281454	intron	CG12017 +	chr3L	3281722	intron	CG12017 +	chr3L	3281991	intron	CG12017 +	chr3L_8_3280001	chr3L_3280001	D20-c5
768	chr3L	3475066	3475085	chr3L	3475534	3475554	jockey	4	466	3.0	3.5	3.2	1.0	488	chr3L	3475066	intron	CG42324 +	chr3L	3475310	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	D20-c5
772	chr3L	3601289	3601326	chr3L	3606625	3606661	copia	4	5336	1.5	0.0	0.8	2.2	5372	chr3L	3601289	intron	Eip63E +	chr3L	3603975	intron	Eip63E +	chr3L	3606661	intron	Eip63E +	chr3L_4_3600001	chr3L_3600001	D20-c5
774	chr3L	3833712	3833747	chr3L	3833978	3834013	pogo	6	266	3.0	0.5	1.8	2.1	301	chr3L	3833712	intron	enc +	chr3L	3833862	intron	enc +	chr3L	3834013	intron	enc +	chr3L_6_3830001	chr3L_3830001	D20-c5
780	chr3L	5045433	5045477	chr3L	5050238	5050283	Doc	5	4806	1.5	0.5	1.0	2.5	4850	chr3L	5045433	intron	Con -	chr3L	5047858	intron	Con -	chr3L	5050283	intron	Con -	chr3L_5_5045001	chr3L_5045001	D20-c5
785	chr3L	5537695	5537731	chr3L	5538062	5538098	jockey	5	367	1.0	0.5	0.8	2.8	403	chr3L	5537695	intergenic	not near genes	chr3L	5537896	intergenic	not near genes	chr3L	5538098	intergenic	CG10625 -	chr3L_5_5535001	chr3L_5535001	D20-c5
790	chr3L	5910008	5910063	chr3L	5910274	5910329	pogo	5	266	1.0	1.0	1.0	2.5	321	chr3L	5910008	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910329	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	D20-c5
791	chr3L	5926292	5926338	chr3L	5926506	5926545	BS	10	211	1.5	2.5	2.0	3.3	253	chr3L	5926292	intron	Vap-33B +	chr3L	5926418	intron	Vap-33B +	chr3L	5926545	intron	Vap-33B +	chr3L_10_5925001	chr3L_5925001	D20-c5
796	chr3L	6220901	6220940	chr3L	6230078	6230117	roo	4	9177	3.0	1.0	2.0	1.3	9216	chr3L	6220901	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230117	intergenic	not near genes	chr3L_4_6225001	chr3L_6225001	D20-c5
806	chr3L	6855918	6855945	chr3L	6860727	6860753	Doc	4	4809	2.0	2.0	2.0	1.3	4835	chr3L	6855918	intergenic	not near genes	chr3L	6858336	intergenic	not near genes	chr3L	6860753	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	D20-c5
816	chr3L	7498741	7498776	chr3L	7503543	7503577	F-element	5	4801	1.0	1.5	1.2	2.3	4836	chr3L	7498741	5` UTR	CG8539 -	chr3L	7501159	intergenic	not near genes	chr3L	7503577	intergenic	not near genes	chr3L_5_7500001	chr3L_7500001	D20-c5
826	chr3L	7916819	7916854	chr3L	7926013	7926050	roo	4	9193	1.0	0.5	0.8	2.2	9231	chr3L	7916819	3` UTR	syd -	chr3L	7921434	intron	syd -	chr3L	7926050	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	D20-c5
827	chr3L	7985356	7985390	chr3L	7987709	7987743	NOF	7	2353	1.5	2.5	2.0	2.3	2387	chr3L	7985356	intron	nmo +	chr3L	7986550	intron	nmo +	chr3L	7987743	intron	nmo +	chr3L_7_7985001	chr3L_7985001	D20-c5
829	chr3L	8481761	8481798	chr3L	8490939	8490977	roo	9	9181	4.5	4.0	4.2	1.7	9216	chr3L	8481761	intron	CG43163 -	chr3L	8486369	intron	CG43163 -	chr3L	8490977	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	D20-c5
836	chr3L	9076911	9076937	chr3L	9084495	9084522	412	9	7584	6.0	5.0	5.5	1.4	7611	chr3L	9076911	exon	Tequila +	chr3L	9080716	intron	Tequila +	chr3L	9084522	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	D20-c5
838	chr3L	9219225	9219274	chr3L	9219920	9219955	jockey	10	695	5.5	2.5	4.0	2.0	730	chr3L	9219225	intergenic	not near genes	chr3L	9219590	intergenic	not near genes	chr3L	9219955	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	D20-c5
839	chr3L	9270590	9270632	chr3L	9278370	9278412	roo	7	7780	3.0	1.0	2.0	2.3	7822	chr3L	9270590	intron	GluRIB +	chr3L	9274501	intron	GluRIB +	chr3L	9278412	exon	GluRIB +	chr3L_7_9270001	chr3L_9270001	D20-c5
854	chr3L	10414924	10414956	chr3L	10417321	10417353	Doc	5	2397	2.5	2.0	2.2	1.6	2429	chr3L	10414924	intergenic	CG12362 +	chr3L	10416138	intergenic	not near genes	chr3L	10417353	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	D20-c5
862	chr3L	11264442	11264491	chr3L	11271419	11271468	17.6	14	6977	4.5	3.0	3.8	2.9	7026	chr3L	11264442	intergenic	not near genes	chr3L	11267955	intergenic	not near genes	chr3L	11271468	intergenic	not near genes	chr3L_14_11265001	chr3L_11265001	D20-c5
865	chr3L	11329694	11329723	chr3L	11332908	11332953	jockey	7	3224	2.0	2.0	2.0	2.3	3259	chr3L	11329694	intergenic	not near genes	chr3L	11331324	intergenic	not near genes	chr3L	11332953	intergenic	not near genes	chr3L_7_11330001	chr3L_11330001	D20-c5
894	chr3L	12919257	12919273	chr3L	12924750	12924771	Rt1c	4	5497	5.5	3.5	4.5	0.7	5514	chr3L	12919257	intergenic	not near genes	chr3L	12922014	intergenic	not near genes	chr3L	12924771	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	D20-c5
895	chr3L	12957767	12957791	chr3L	12962270	12962298	copia	5	4506	1.5	3.0	2.2	1.6	4531	chr3L	12957767	intergenic	not near genes	chr3L	12960032	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	D20-c5
907	chr3L	13525136	13525183	chr3L	13532957	13533004	roo	5	7821	2.0	1.0	1.5	2.0	7868	chr3L	13525136	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13533004	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	D20-c5
909	chr3L	13804532	13804570	chr3L	13822842	13822881	roo	4	18311	2.5	1.5	2.0	1.3	18349	chr3L	13804532	intergenic	not near genes	chr3L	13813706	intergenic	not near genes	chr3L	13822881	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	D20-c5
919	chr3L	14295986	14296014	chr3L	14296477	14296519	roo	7	507	2.5	6.5	4.5	1.3	533	chr3L	14295986	intron	fz +	chr3L	14296252	intron	fz +	chr3L	14296519	intron	fz +	chr3L_7_14295001	chr3L_14295001	D20-c5
920	chr3L	14311999	14312042	chr3L	14316838	14316879	X-element	9	4838	2.0	4.5	3.2	2.1	4880	chr3L	14311999	exon	fz +	chr3L	14314439	intron	fz +	chr3L	14316879	intron	fz +	chr3L_9_14310001	chr3L_14310001	D20-c5
924	chr3L	14468449	14468467	chr3L	14473679	14473698	copia	4	5230	2.0	3.5	2.8	1.1	5249	chr3L	14468449	intron	bbg -	chr3L	14471074	intron	bbg -	chr3L	14473698	intron	bbg -	chr3L_4_14470001	chr3L_14470001	D20-c5
928	chr3L	14721163	14721203	chr3L	14723031	14723068	Rt1c	14	1866	4.0	1.5	2.8	3.7	1905	chr3L	14721163	intron	ome +	chr3L	14722116	intron	ome +	chr3L	14723068	intron	ome +	chr3L_14_14720001	chr3L_14720001	D20-c5
931	chr3L	15085032	15085082	chr3L	15086223	15086273	1360	6	1187	1.0	3.0	2.0	2.0	1241	chr3L	15085032	intron	cp309 -	chr3L	15085652	intron	cp309 -	chr3L	15086273	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	D20-c5
935	chr3L	15295745	15295798	chr3L	15298611	15298666	gypsy5	7	2866	2.0	2.0	2.0	2.3	2921	chr3L	15295745	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298666	intergenic	Best4 +	chr3L_7_15295001	chr3L_15295001	D20-c5
937	chr3L	15423742	15423784	chr3L	15426611	15426651	opus	6	2869	1.5	0.5	1.0	3.0	2909	chr3L	15423742	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426651	intergenic	not near genes	chr3L_6_15425001	chr3L_15425001	D20-c5
941	chr3L	15554902	15554944	chr3L	15556712	15556756	S-element	4	1812	0.5	1.0	0.8	2.2	1854	chr3L	15554902	intron	AGO2 +	chr3L	15555829	intron	AGO2 +	chr3L	15556756	intron	AGO2 +	chr3L_4_15555001	chr3L_15555001	D20-c5
948	chr3L	15899212	15899243	chr3L	15899803	15899835	jockey	4	592	4.0	2.5	3.2	1.0	623	chr3L	15899212	intergenic	pHCl -	chr3L	15899524	intergenic	pHCl -	chr3L	15899835	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	D20-c5
953	chr3L	16184091	16184134	chr3L	16188935	16188978	X-element	4	4844	1.0	2.0	1.5	1.6	4887	chr3L	16184091	intergenic	not near genes	chr3L	16186534	intergenic	not near genes	chr3L	16188978	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	D20-c5
957	chr3L	16443824	16443878	chr3L	16446189	16446224	Doc	7	2360	1.0	1.0	1.0	3.5	2400	chr3L	16443824	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445024	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446224	intron,intron	CG33158 +,dsx-c73A -	chr3L_7_16445001	chr3L_16445001	D20-c5
959	chr3L	16493956	16494000	chr3L	16494498	16494541	jockey	10	540	7.0	2.5	4.8	1.7	585	chr3L	16493956	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494248	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494541	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_10_16490001	chr3L_16490001	D20-c5
962	chr3L	16616485	16616533	chr3L	16621838	16621883	297	6	5351	1.5	1.5	1.5	2.4	5398	chr3L	16616485	3` UTR	Abl -	chr3L	16619184	3` UTR	Abl -	chr3L	16621883	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	D20-c5
970	chr3L	16945712	16945758	chr3L	16954890	16954933	roo	10	9176	2.5	2.0	2.2	3.1	9221	chr3L	16945712	exon	Obp73a +	chr3L	16950322	intergenic	not near genes	chr3L	16954933	5` UTR	Nc73EF +	chr3L_10_16950001	chr3L_16950001	D20-c5
971	chr3L	17084980	17085009	chr3L	17094154	17094183	roo	8	9174	6.5	4.0	5.2	1.3	9203	chr3L	17084980	intron	Rbp6 -	chr3L	17089582	intron	Rbp6 -	chr3L	17094183	intron	Rbp6 -	chr3L_8_17085001	chr3L_17085001	D20-c5
974	chr3L	17516960	17516999	chr3L	17524543	17524582	412	5	7583	2.5	2.0	2.2	1.6	7622	chr3L	17516960	intron	CG7564 +	chr3L	17520771	intron	CG7564 +	chr3L	17524582	3` UTR	CG7564 +	chr3L_5_17520001	chr3L_17520001	D20-c5
975	chr3L	17730836	17730874	chr3L	17738191	17738229	mdg1	6	7354	0.5	2.0	1.2	2.7	7393	chr3L	17730836	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738229	intron	Ccn +	chr3L_6_17730001	chr3L_17730001	D20-c5
1001	chr3L	19008828	19008869	chr3L	19009190	19009230	jockey	5	362	1.0	3.5	2.2	1.6	402	chr3L	19008828	intron	nkd -	chr3L	19009029	intron	nkd -	chr3L	19009230	intron	nkd -	chr3L_5_19005001	chr3L_19005001	D20-c5
1003	chr3L	19117020	19117071	chr3L	19124492	19124542	mdg1	7	7471	3.5	0.5	2.0	2.3	7522	chr3L	19117020	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124542	intron	CG14082 -	chr3L_7_19120001	chr3L_19120001	D20-c5
1006	chr3L	19208035	19208090	chr3L	19209434	19209489	Doc	9	1398	2.5	2.0	2.2	2.8	1454	chr3L	19208035	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209489	intron	fz2 -	chr3L_9_19205001	chr3L_19205001	D20-c5
1017	chr3L	19848484	19848526	chr3L	19857699	19857741	roo	4	9215	2.5	2.5	2.5	1.1	9257	chr3L	19848484	intron	Papss +	chr3L	19853112	intron	Papss +	chr3L	19857741	intron	Papss +	chr3L_4_19850001	chr3L_19850001	D20-c5
1018	chr3L	19861797	19861853	chr3L	19863608	19863664	S-element	7	1812	0.5	0.0	0.2	5.8	1867	chr3L	19861797	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863664	intergenic	not near genes	chr3L_7_19860001	chr3L_19860001	D20-c5
1023	chr3L	20257320	20257356	chr3L	20258465	20258500	pogo	8	1145	0.0	1.0	0.5	5.3	1180	chr3L	20257320	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258500	intron	rdgC +	chr3L_8_20255001	chr3L_20255001	D20-c5
1025	chr3L	20487661	20487673	chr3L	20488137	20488149	INE-1	4	476	4.0	8.0	6.0	0.6	488	chr3L	20487661	intron	ZnT77C -	chr3L	20487905	intron	ZnT77C -	chr3L	20488149	exon	ZnT77C -	chr3L_4_20485001	chr3L_20485001	D20-c5
1030	chr3L	20590043	20590076	chr3L	20590607	20590639	412	11	564	3.5	1.5	2.5	3.1	596	chr3L	20590043	intergenic	not near genes	chr3L	20590341	intergenic	not near genes	chr3L	20590639	intergenic	not near genes	chr3L_11_20590001	chr3L_20590001	D20-c5
1031	chr3L	20821275	20821296	chr3L	20824768	20824790	NOF	6	3490	0.5	2.5	1.5	2.4	3515	chr3L	20821275	intron	Pka-R1 +	chr3L	20823032	intron	Pka-R1 +	chr3L	20824790	intron	Pka-R1 +	chr3L_6_20820001	chr3L_20820001	D20-c5
1033	chr3L	21014899	21014920	chr3L	21023405	21023426	Tirant	9	8505	5.5	2.0	3.8	1.9	8527	chr3L	21014899	intron	skd -	chr3L	21019162	intron	skd -	chr3L	21023426	intron	skd -	chr3L_9_21015001	chr3L_21015001	D20-c5
1034	chr3L	21014923	21014948	chr3L	21023404	21023454	Tirant	6	8500	2.5	2.0	2.2	1.9	8531	chr3L	21014923	intron	skd -	chr3L	21019188	intron	skd -	chr3L	21023454	intron	skd -	chr3L_6_21015001	chr3L_21015001	D20-c5
1037	chr3L	21151850	21151887	chr3L	21156959	21156996	flea	5	5107	2.5	1.5	2.0	1.7	5146	chr3L	21151850	intron	Ac78C -	chr3L	21154423	intron	Ac78C -	chr3L	21156996	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	D20-c5
1039	chr3L	21243726	21243751	chr3L	21251312	21251319	412	5	7583	3.0	3.0	3.0	1.2	7593	chr3L	21243726	intron	Eip78C +	chr3L	21247522	intron	Eip78C +	chr3L	21251319	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	D20-c5
1041	chr3L	21306127	21306168	chr3L	21315311	21315352	roo	4	9182	0.5	1.5	1.0	2.0	9225	chr3L	21306127	3` UTR	CG7632 +	chr3L	21310740	intron	Pc -	chr3L	21315352	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	D20-c5
1047	chr3L	21749310	21749341	chr3L	21754489	21754526	Doc	5	5182	4.0	6.5	5.2	0.8	5216	chr3L	21749310	intron	Syn1 -	chr3L	21751918	intron	Syn1 -	chr3L	21754526	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	D20-c5
1051	chr3L	22099656	22099692	chr3L	22105867	22105903	3S18	4	6211	5.0	3.5	4.2	0.8	6247	chr3L	22099656	intergenic	not near genes	chr3L	22102780	intergenic	not near genes	chr3L	22105903	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	D20-c5
1056	chr3L	22577597	22577645	chr3L	22582410	22582448	Doc	11	4812	3.5	1.5	2.5	3.1	4851	chr3L	22577597	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582448	3` UTR	CG14459 -	chr3L_11_22580001	chr3L_22580001	D20-c5
1057	chr3L	22617174	22617221	chr3L	22624651	22624697	blood	6	7477	6.5	6.5	6.5	0.8	7523	chr3L	22617174	intron	CG14459 -	chr3L	22620936	intron	CG14459 -	chr3L	22624697	intron	CG14459 -	chr3L_6_22620001	chr3L_22620001	D20-c5
1059	chr3L	22761393	22761411	chr3L	22766852	22766870	Ivk	4	5458	5.0	4.0	4.5	0.7	5477	chr3L	22761393	intron	SPoCk +	chr3L	22764132	intron	SPoCk +	chr3L	22766870	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	D20-c5
1064	chr3L	22989851	22989890	chr3L	22996849	22996889	297	5	6998	4.0	1.5	2.8	1.3	7038	chr3L	22989851	intergenic	not near genes	chr3L	22993370	intergenic	not near genes	chr3L	22996889	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	D20-c5
1065	chr3L	23042204	23042243	chr3L	23048980	23049016	gypsy6	5	6776	9.0	7.5	8.2	0.5	6812	chr3L	23042204	intergenic	not near genes	chr3L	23045610	intergenic	not near genes	chr3L	23049016	intergenic	not near genes	chr3L_5_23045001	chr3L_23045001	D20-c5
1066	chr3L	24168773	24168822	chr3L	24176126	24176175	ZAM	20	7352	4.5	6.5	5.5	3.1	7402	chr3L	24168773	intron	Snap25 +	chr3L	24172474	intron	Snap25 +	chr3L	24176175	intron	Snap25 +	chr3L_20_24170001	chr3L_24170001	D20-c5
1073	chr3R	4206069	4206093	chr3R	4211669	4211693	mdg3	4	5600	3.0	2.5	2.8	1.1	5624	chr3R	4206069	intron	CG14636 -	chr3R	4208881	intron	CG14636 -	chr3R	4211693	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	D20-c5
1074	chr3R	4887456	4887508	chr3R	4894858	4894904	rover	17	7401	3.5	2.5	3.0	4.2	7448	chr3R	4887456	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894904	intergenic	not near genes	chr3R_17_4890001	chr3R_4890001	D20-c5
1076	chr3R	5045822	5045873	chr3R	5052949	5053000	HMS-Beagle	7	7127	3.0	3.0	3.0	1.8	7178	chr3R	5045822	3` UTR	CR43635 -	chr3R	5049411	intergenic	not near genes	chr3R	5053000	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	D20-c5
1078	chr3R	5746013	5746038	chr3R	5746279	5746303	pogo	7	265	5.0	2.5	3.8	1.5	290	chr3R	5746013	3` UTR	Madm +	chr3R	5746158	3` UTR	Madm +	chr3R	5746303	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	D20-c5
1079	chr3R	5809090	5809131	chr3R	5809354	5809397	pogo	6	265	3.0	3.0	3.0	1.5	307	chr3R	5809090	3` UTR	CG11000 +	chr3R	5809244	3` UTR	CG11000 +	chr3R	5809397	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	D20-c5
1080	chr3R	5822360	5822396	chr3R	5823551	5823587	1360	9	1191	3.0	4.0	3.5	2.0	1227	chr3R	5822360	3` UTR	CG2023 -	chr3R	5822974	3` UTR	CG2023 -	chr3R	5823587	3` UTR	CG2023 -	chr3R_9_5820001	chr3R_5820001	D20-c5
1083	chr3R	5927544	5927584	chr3R	5927805	5927849	pogo	9	263	3.5	4.5	4.0	1.8	305	chr3R	5927544	intron	CG34113 -	chr3R	5927696	intron	CG34113 -	chr3R	5927849	intron	CG34113 -	chr3R_9_5925001	chr3R_5925001	D20-c5
1089	chr3R	6015948	6015992	chr3R	6024452	6024498	Tirant	11	8505	3.0	8.5	5.8	1.6	8550	chr3R	6015948	intergenic	not near genes	chr3R	6020223	intergenic	not near genes	chr3R	6024498	intergenic	not near genes	chr3R_11_6020001	chr3R_6020001	D20-c5
1091	chr3R	6121033	6121167	chr3R	6121134	6121410	BS	6	121	0.0	0.0	0.0	6.0	377	chr3R	6121033	intergenic	not near genes	chr3R	6121222	intergenic	not near genes	chr3R	6121410	intergenic	not near genes	chr3R_6_6120001	chr3R_6120001	D20-c5
1092	chr3R	6158490	6158523	chr3R	6167098	6167117	Tirant	7	8606	4.0	2.5	3.2	1.7	8627	chr3R	6158490	intergenic	not near genes	chr3R	6162804	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_7_6160001	chr3R_6160001	D20-c5
1093	chr3R	6175159	6175201	chr3R	6182456	6182498	HMS-Beagle2	5	7296	3.0	1.5	2.2	1.6	7339	chr3R	6175159	intergenic	Osi1 +	chr3R	6178828	intron	CR45194 +	chr3R	6182498	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	D20-c5
1095	chr3R	6206270	6206315	chr3R	6206512	6206557	BS	6	242	3.0	3.0	3.0	1.5	287	chr3R	6206270	exon	Osi24 +	chr3R	6206414	intron	Osi24 +	chr3R	6206557	intron	Osi24 +	chr3R_6_6205001	chr3R_6205001	D20-c5
1099	chr3R	6737485	6737524	chr3R	6739289	6739333	Doc	7	1809	3.0	1.0	2.0	2.3	1848	chr3R	6737485	intron	pb -	chr3R	6738409	intron	pb -	chr3R	6739333	intron	pb -	chr3R_7_6735001	chr3R_6735001	D20-c5
1115	chr3R	7849616	7849665	chr3R	7850808	7850857	1360	5	1192	1.0	1.0	1.0	2.5	1241	chr3R	7849616	intron	CG34384 +	chr3R	7850236	intron	CG34384 +	chr3R	7850857	intron	CG34384 +	chr3R_5_7850001	chr3R_7850001	D20-c5
1117	chr3R	7973318	7973336	chr3R	7974407	7974422	1360	6	1088	2.5	2.5	2.5	1.7	1104	chr3R	7973318	intergenic	not near genes	chr3R	7973870	intergenic	not near genes	chr3R	7974422	3` UTR	CD98hc -	chr3R_6_7970001	chr3R_7970001	D20-c5
1121	chr3R	8090540	8090567	chr3R	8094042	8094069	297	4	3502	1.5	6.0	3.8	0.8	3529	chr3R	8090540	intergenic	CR44330 +	chr3R	8092304	intergenic	not near genes	chr3R	8094069	intergenic	CG7900 +	chr3R_4_8090001	chr3R_8090001	D20-c5
1122	chr3R	8101756	8101784	chr3R	8104865	8104890	G2	5	3108	1.5	3.0	2.2	1.6	3134	chr3R	8101756	exon	CG7900 +	chr3R	8103323	intron	CG7900 +	chr3R	8104890	3` UTR	CG7900 +	chr3R_5_8100001	chr3R_8100001	D20-c5
1124	chr3R	8207559	8207586	chr3R	8208418	8208456	F-element	5	868	1.0	4.0	2.5	1.4	897	chr3R	8207559	intergenic	not near genes	chr3R	8208008	intergenic	not near genes	chr3R	8208456	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	D20-c5
1127	chr3R	8402985	8403037	chr3R	8412176	8412212	roo	15	9189	3.5	4.5	4.0	3.0	9227	chr3R	8402985	intron	CG45263 -	chr3R	8407598	intron	CG45263 -	chr3R	8412212	intron	CG45263 -	chr3R_15_8405001	chr3R_8405001	D20-c5
1130	chr3R	8570468	8570506	chr3R	8575113	8575166	HMS-Beagle	5	4653	2.5	1.5	2.0	1.7	4698	chr3R	8570468	intergenic	not near genes	chr3R	8572817	intergenic	not near genes	chr3R	8575166	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	D20-c5
1132	chr3R	8601763	8601792	chr3R	8610929	8610970	roo	6	9176	3.0	1.5	2.2	1.9	9207	chr3R	8601763	intron	5-HT2B +	chr3R	8606366	intron	5-HT2B +	chr3R	8610970	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	D20-c5
1134	chr3R	8707347	8707381	chr3R	8709797	8709847	jockey	11	2463	1.0	3.5	2.2	3.4	2500	chr3R	8707347	intergenic	not near genes	chr3R	8708597	intergenic	not near genes	chr3R	8709847	intergenic	not near genes	chr3R_11_8705001	chr3R_8705001	D20-c5
1140	chr3R	9278779	9278806	chr3R	9284057	9284089	Rt1a	7	5283	3.0	5.0	4.0	1.4	5310	chr3R	9278779	intergenic	not near genes	chr3R	9281434	intergenic	not near genes	chr3R	9284089	intergenic	not near genes	chr3R_7_9280001	chr3R_9280001	D20-c5
1141	chr3R	9319559	9319599	chr3R	9320019	9320059	jockey	5	460	1.5	2.5	2.0	1.7	500	chr3R	9319559	intron	CG8861 -	chr3R	9319809	intron	CG8861 -	chr3R	9320059	intron	CG8861 -	chr3R_5_9315001	chr3R_9315001	D20-c5
1145	chr3R	9699968	9699991	chr3R	9700082	9700104	1360	6	112	1.5	4.5	3.0	1.5	136	chr3R	9699968	intron	Unc-115a -	chr3R	9700036	intron	Unc-115a -	chr3R	9700104	intron	Unc-115a -	chr3R_6_9700001	chr3R_9700001	D20-c5
1148	chr3R	10231758	10231809	chr3R	10237360	10237411	mdg3	8	5602	1.0	2.0	1.5	3.2	5653	chr3R	10231758	intron	CG42795 +	chr3R	10234584	intron	CG42795 +	chr3R	10237411	intron	CG42795 +	chr3R_8_10230001	chr3R_10230001	D20-c5
1155	chr3R	10804158	10804200	chr3R	10811715	10811757	17.6	8	7557	2.5	2.0	2.2	2.5	7599	chr3R	10804158	intergenic	CG14692 -	chr3R	10807958	intergenic	not near genes	chr3R	10811757	3` UTR	CG14693 -	chr3R_8_10805001	chr3R_10805001	D20-c5
1159	chr3R	11065580	11065618	chr3R	11071257	11071284	297	5	5671	1.0	4.0	2.5	1.4	5704	chr3R	11065580	intergenic	not near genes	chr3R	11068432	intergenic	not near genes	chr3R	11071284	intergenic	not near genes	chr3R_5_11065001	chr3R_11065001	D20-c5
1167	chr3R	11841046	11841072	chr3R	11846262	11846288	BS	6	5215	7.0	1.5	4.2	1.2	5242	chr3R	11841046	intron	CG6959 -	chr3R	11843667	intron	CG6959 -	chr3R	11846288	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	D20-c5
1170	chr3R	12022875	12022915	chr3R	12025072	12025117	pogo	5	2201	0.5	2.5	1.5	2.0	2242	chr3R	12022875	intergenic	not near genes	chr3R	12023996	intergenic	not near genes	chr3R	12025117	intergenic	not near genes	chr3R_5_12020001	chr3R_12020001	D20-c5
1190	chr3R	12864549	12864571	chr3R	12865058	12865081	roo	4	510	1.5	2.0	1.8	1.4	532	chr3R	12864549	intergenic	not near genes	chr3R	12864815	intergenic	not near genes	chr3R	12865081	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	D20-c5
1193	chr3R	12920136	12920173	chr3R	12925364	12925401	copia	9	5228	3.5	3.0	3.2	2.1	5265	chr3R	12920136	intron	beat-Vb +	chr3R	12922768	intron	beat-Vb +	chr3R	12925401	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	D20-c5
1197	chr3R	13135811	13135857	chr3R	13138011	13138057	pogo	5	2200	4.5	1.0	2.8	1.3	2246	chr3R	13135811	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136934	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138057	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13135001	chr3R_13135001	D20-c5
1198	chr3R	13143016	13143066	chr3R	13148617	13148667	mdg3	13	5600	2.0	3.0	2.5	3.7	5651	chr3R	13143016	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148667	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_13_13145001	chr3R_13145001	D20-c5
1213	chr3R	14021625	14021678	chr3R	14023467	14023519	S-element	8	1836	1.5	2.0	1.8	2.9	1894	chr3R	14021625	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023519	intron	rdx -	chr3R_8_14020001	chr3R_14020001	D20-c5
1216	chr3R	14246388	14246418	chr3R	14247908	14247939	jockey	8	1521	4.0	1.0	2.5	2.3	1551	chr3R	14246388	intergenic	not near genes	chr3R	14247164	intergenic	not near genes	chr3R	14247939	intergenic	not near genes	chr3R_8_14245001	chr3R_14245001	D20-c5
1234	chr3R	15059258	15059481	chr3R	15059477	15059585	BS	10	174	0.0	0.0	0.0	10.0	327	chr3R	15059258	intron	dpr9 -	chr3R	15059422	intron	dpr9 -	chr3R	15059585	intron	dpr9 -	chr3R_10_15055001	chr3R_15055001	D20-c5
1236	chr3R	15079791	15079827	chr3R	15080047	15080092	pogo	5	262	3.5	2.0	2.8	1.3	301	chr3R	15079791	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080092	3` UTR	CG6966 -	chr3R_5_15075001	chr3R_15075001	D20-c5
1239	chr3R	15102473	15102527	chr3R	15109755	15109807	412	4	7279	0.0	1.0	0.5	2.7	7334	chr3R	15102473	intron	CG42788 -	chr3R	15106140	intron	CG42788 -	chr3R	15109807	intron	CG42788 -	chr3R_4_15105001	chr3R_15105001	D20-c5
1240	chr3R	15132041	15132074	chr3R	15135125	15135159	Juan	12	3084	4.5	5.0	4.8	2.1	3118	chr3R	15132041	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135159	3` UTR	CG6912 -	chr3R_12_15130001	chr3R_15130001	D20-c5
1243	chr3R	15601146	15601196	chr3R	15608693	15608735	412	12	7545	2.5	2.5	2.5	3.4	7589	chr3R	15601146	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608735	intergenic	not near genes	chr3R_12_15600001	chr3R_15600001	D20-c5
1244	chr3R	15618739	15618759	chr3R	15626236	15626250	blood	4	7496	0.5	0.5	0.5	2.7	7511	chr3R	15618739	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626250	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	D20-c5
1249	chr3R	16756312	16756348	chr3R	16762528	16762564	diver	5	6216	0.5	1.5	1.0	2.5	6252	chr3R	16756312	intron	bxd -	chr3R	16759438	intron	bxd -	chr3R	16762564	intron	bxd -	chr3R_5_16755001	chr3R_16755001	D20-c5
1250	chr3R	17294654	17294667	chr3R	17295106	17295120	BS	6	453	1.5	2.0	1.8	2.1	466	chr3R	17294654	intergenic	not near genes	chr3R	17294887	intergenic	not near genes	chr3R	17295120	intergenic	not near genes	chr3R_6_17290001	chr3R_17290001	D20-c5
1259	chr3R	17591270	17591318	chr3R	17591730	17591779	F-element	7	459	1.0	3.0	2.0	2.3	509	chr3R	17591270	intergenic	not near genes	chr3R	17591524	intergenic	not near genes	chr3R	17591779	intergenic	not near genes	chr3R_7_17590001	chr3R_17590001	D20-c5
1265	chr3R	17925834	17925872	chr3R	17927326	17927364	hobo	9	1489	2.5	6.0	4.2	1.7	1530	chr3R	17925834	intron	cpo +	chr3R	17926599	intron	cpo +	chr3R	17927364	intron	cpo +	chr3R_9_17925001	chr3R_17925001	D20-c5
1274	chr3R	19193002	19193008	chr3R	19197283	19197337	F-element	4	4302	0.5	1.0	0.8	2.2	4335	chr3R	19193002	intron	CG31475 +	chr3R	19195170	intron	CG31475 +	chr3R	19197337	intron	CG31475 +	chr3R_4_19195001	chr3R_19195001	D20-c5
1283	chr3R	20330976	20331019	chr3R	20331487	20331528	roo	5	511	1.0	0.0	0.5	3.3	552	chr3R	20330976	intergenic	Sirt2 +	chr3R	20331252	intergenic	Sirt2 +	chr3R	20331528	intergenic	not near genes	chr3R_5_20330001	chr3R_20330001	D20-c5
1291	chr3R	21141650	21141677	chr3R	21150156	21150179	Tirant	11	8505	7.5	2.5	5.0	1.8	8529	chr3R	21141650	intron	SNF4Agamma +	chr3R	21145914	intron	SNF4Agamma +	chr3R	21150179	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	D20-c5
1298	chr3R	21761105	21761155	chr3R	21768515	21768572	mdg1	16	7412	1.0	1.5	1.2	7.3	7467	chr3R	21761105	exon	CG42335 +	chr3R	21764838	intron	CG42335 +	chr3R	21768572	exon	CG42335 +	chr3R_16_21760001	chr3R_21760001	D20-c5
1318	chr3R	22450520	22450568	chr3R	22453185	22453233	NOF	12	2663	2.5	3.0	2.8	3.2	2713	chr3R	22450520	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453233	intron	CG34376 +	chr3R_12_22450001	chr3R_22450001	D20-c5
1332	chr3R	23558375	23558421	chr3R	23560181	23560227	Bari1	7	1806	1.5	1.0	1.2	3.2	1852	chr3R	23558375	intron	beat-IV +	chr3R	23559301	intron	beat-IV +	chr3R	23560227	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	D20-c5
1333	chr3R	23684675	23684722	chr3R	23685186	23685233	roo	11	510	4.5	7.5	6.0	1.6	558	chr3R	23684675	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685233	exon	CG18754 +	chr3R_11_23680001	chr3R_23680001	D20-c5
1335	chr3R	23835384	23835400	chr3R	23844559	23844575	roo	4	9175	4.0	0.0	2.0	1.3	9191	chr3R	23835384	intron	CG34355 +	chr3R	23839980	intron	CG34355 +	chr3R	23844575	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	D20-c5
1340	chr3R	24072067	24072110	chr3R	24072529	24072571	jockey	8	462	5.5	0.0	2.8	2.1	504	chr3R	24072067	intron	4EHP -	chr3R	24072319	intron	4EHP -	chr3R	24072571	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	D20-c5
1341	chr3R	24076891	24076938	chr3R	24078383	24078430	hobo	14	1490	4.5	2.5	3.5	3.1	1539	chr3R	24076891	intron	4EHP -	chr3R	24077660	intron	4EHP -	chr3R	24078430	intron	4EHP -	chr3R_14_24075001	chr3R_24075001	D20-c5
1348	chr3R	24927111	24927152	chr3R	24931926	24931966	Doc	9	4815	2.0	2.0	2.0	3.0	4855	chr3R	24927111	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931966	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	D20-c5
1355	chr3R	25725812	25725854	chr3R	25734997	25735038	roo	5	9183	0.5	0.5	0.5	3.3	9226	chr3R	25725812	intron	LpR2 -	chr3R	25730425	intron	LpR2 -	chr3R	25735038	intron	LpR2 -	chr3R_5_25730001	chr3R_25730001	D20-c5
1357	chr3R	25832682	25832714	chr3R	25841887	25841920	roo	5	9206	3.5	4.5	4.0	1.0	9238	chr3R	25832682	exon	alpha4GT2 +	chr3R	25837301	intron	alpha4GT2 +	chr3R	25841920	exon	alpha4GT2 +	chr3R_5_25835001	chr3R_25835001	D20-c5
1362	chr3R	26108799	26108811	chr3R	26117407	26117419	Tirant	5	8608	4.5	0.0	2.2	1.6	8620	chr3R	26108799	5` UTR	CG31324 +	chr3R	26113109	intron	CG31324 +	chr3R	26117419	intron	CG31324 +	chr3R_5_26110001	chr3R_26110001	D20-c5
1365	chr3R	26376303	26376339	chr3R	26385488	26385524	roo	5	9185	3.5	0.0	1.8	1.8	9221	chr3R	26376303	intergenic	not near genes	chr3R	26380914	intergenic	not near genes	chr3R	26385524	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	D20-c5
1369	chr3R	26558309	26558359	chr3R	26565647	26565675	Stalker4	6	7334	1.5	3.0	2.2	1.9	7366	chr3R	26558309	intron	scrib +	chr3R	26561992	intron	scrib +	chr3R	26565675	intron	scrib +	chr3R_6_26560001	chr3R_26560001	D20-c5
1372	chr3R	26642716	26642746	chr3R	26643132	26643164	jockey	5	417	1.5	0.5	1.0	2.5	448	chr3R	26642716	intergenic	not near genes	chr3R	26642940	intergenic	not near genes	chr3R	26643164	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	D20-c5
1375	chr3R	26810541	26810584	chr3R	26811051	26811094	roo	9	507	0.5	2.5	1.5	3.6	553	chr3R	26810541	intron	Tl +	chr3R	26810818	intron	Tl +	chr3R	26811094	intron	Tl +	chr3R_9_26810001	chr3R_26810001	D20-c5
1379	chr3R	27007386	27007432	chr3R	27016545	27016592	roo	4	9157	1.5	0.5	1.0	2.0	9206	chr3R	27007386	intron	RYa-R +	chr3R	27011989	intron	RYa-R +	chr3R	27016592	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	D20-c5
1382	chr3R	27140496	27140535	chr3R	27148131	27148170	412	8	7635	5.5	5.0	5.2	1.3	7674	chr3R	27140496	intron	CG6051 -	chr3R	27144333	intron	CG6051 -	chr3R	27148170	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	D20-c5
1384	chr3R	27342785	27342820	chr3R	27351391	27351426	Tirant	7	8605	2.5	3.5	3.0	1.8	8641	chr3R	27342785	intron	CG42534 +	chr3R	27347106	intron	CG42534 +	chr3R	27351426	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	D20-c5
1387	chr3R	27521140	27521184	chr3R	27530374	27530418	roo	4	9232	1.5	2.0	1.8	1.4	9278	chr3R	27521140	intron	CG12885 +	chr3R	27525779	intron	CG12885 +	chr3R	27530418	intron	CG12885 +	chr3R_4_27525001	chr3R_27525001	D20-c5
1391	chr3R	27725546	27725588	chr3R	27731013	27731054	I-element	5	5467	1.5	3.0	2.2	1.6	5508	chr3R	27725546	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731054	intergenic	not near genes	chr3R_5_27725001	chr3R_27725001	D20-c5
1393	chr3R	27856745	27856779	chr3R	27858253	27858287	hopper2	9	1508	3.0	2.0	2.5	2.6	1542	chr3R	27856745	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858287	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	D20-c5
1394	chr3R	27875685	27875698	chr3R	27882765	27882776	297	5	7080	2.5	2.5	2.5	1.4	7091	chr3R	27875685	intron	CG34353 -	chr3R	27879230	intron	CG34353 -	chr3R	27882776	intron	CG34353 -	chr3R_5_27875001	chr3R_27875001	D20-c5
1397	chr3R	28068482	28068519	chr3R	28073949	28073983	I-element	6	5466	0.0	2.5	1.2	2.7	5501	chr3R	28068482	intron	CG34362 +	chr3R	28071232	intron	CG34362 +	chr3R	28073983	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	D20-c5
1398	chr3R	28253321	28253367	chr3R	28255856	28255901	jockey	7	2534	3.0	1.0	2.0	2.3	2580	chr3R	28253321	intergenic	not near genes	chr3R	28254611	intergenic	not near genes	chr3R	28255901	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	D20-c5
1408	chr3R	28792857	28792899	chr3R	28797968	28798007	jockey	9	5117	2.5	3.0	2.8	2.4	5150	chr3R	28792857	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28798007	intergenic	not near genes	chr3R_9_28795001	chr3R_28795001	D20-c5
1413	chr3R	29079360	29079406	chr3R	29080757	29080803	NOF	8	1397	3.5	1.5	2.5	2.3	1443	chr3R	29079360	intron	CG11873 +	chr3R	29080082	intron	CG11873 +	chr3R	29080803	intron	CG11873 +	chr3R_8_29080001	chr3R_29080001	D20-c5
1416	chr3R	29406610	29406644	chr3R	29407921	29407955	jockey	8	1310	3.5	4.0	3.8	1.7	1345	chr3R	29406610	intron	Ptp99A +	chr3R	29407282	intron	Ptp99A +	chr3R	29407955	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	D20-c5
1424	chr3R	29738249	29738293	chr3R	29739740	29739784	hobo	4	1491	1.5	1.5	1.5	1.6	1535	chr3R	29738249	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739784	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	D20-c5
1432	chr3R	30084850	30084873	chr3R	30086340	30086365	hobo	7	1492	0.0	1.0	0.5	4.7	1515	chr3R	30084850	intron	sima +	chr3R	30085608	intron	sima +	chr3R	30086365	intron	sima +	chr3R_7_30085001	chr3R_30085001	D20-c5
1436	chr3R	30396197	30396231	chr3R	30404488	30404522	roo	6	8291	1.5	2.5	2.0	2.0	8325	chr3R	30396197	intergenic	not near genes	chr3R	30400360	intergenic	not near genes	chr3R	30404522	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	D20-c5
1439	chr3R	30480448	30480502	chr3R	30482941	30482995	jockey	15	2492	3.5	3.0	3.2	3.6	2547	chr3R	30480448	intron	PH4alphaEFB +	chr3R	30481722	intron	PH4alphaEFB +	chr3R	30482995	intron	PH4alphaEFB +	chr3R_15_30480001	chr3R_30480001	D20-c5
1448	chr3R	31074209	31074255	chr3R	31081832	31081885	springer	7	7622	2.0	0.0	1.0	3.5	7676	chr3R	31074209	intron	Sox100B +	chr3R	31078047	intron	Sox100B +	chr3R	31081885	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	D20-c5
1453	chr3R	31279374	31279405	chr3R	31285590	31285616	diver	8	6215	1.5	3.0	2.2	2.5	6242	chr3R	31279374	intergenic	not near genes	chr3R	31282495	intergenic	not near genes	chr3R	31285616	intergenic	not near genes	chr3R_8_31280001	chr3R_31280001	D20-c5
1454	chr3R	31330395	31330409	chr3R	31335635	31335649	copia	5	5239	4.5	1.0	2.8	1.3	5254	chr3R	31330395	intron	CG34347 +	chr3R	31333022	intron	CG34347 +	chr3R	31335649	intron	CG34347 +	chr3R_5_31330001	chr3R_31330001	D20-c5
1456	chr3R	31413077	31413107	chr3R	31418302	31418316	copia	4	5218	2.5	0.0	1.2	1.8	5239	chr3R	31413077	intron	Gprk2 +	chr3R	31415696	intron	Gprk2 +	chr3R	31418316	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	D20-c5
1463	chr3R	31691525	31691550	chr3R	31696313	31696341	Doc	7	4790	2.5	2.5	2.5	2.0	4816	chr3R	31691525	intergenic	not near genes	chr3R	31693933	intergenic	not near genes	chr3R	31696341	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	D20-c5
1468	chr3R	31997973	31998022	chr3R	32005468	32005517	blood	9	7495	1.0	2.0	1.5	3.6	7544	chr3R	31997973	intron	heph -	chr3R	32001745	intron	heph -	chr3R	32005517	intron	heph -	chr3R_9_32000001	chr3R_32000001	D20-c5
1471	chr4	319969	319988	chr4	328170	328189	Stalker2	4	8200	1.0	0.5	0.8	2.2	8220	chr4	319969	3` UTR	CG32850 +	chr4	324079	intron	CG32850 +	chr4	328189	3` UTR	CG32850 +	chr4_4_320001	chr4_320001	D20-c5
1472	chr4	671589	671629	chr4	680197	680237	Tirant	9	8608	3.0	3.5	3.2	2.1	8648	chr4	671589	intron	CG11360 +	chr4	675913	intron	CG11360 +	chr4	680237	intron	CG11360 +	chr4_9_675001	chr4_675001	D20-c5
1475	chrX	906686	906722	chrX	908500	908536	S-element	7	1814	1.5	3.0	2.2	2.2	1850	chrX	906686	intron	CG43867 -	chrX	907611	intron	CG43867 -	chrX	908536	intron	CG43867 -	chrX_7_905001	chrX_905001	D20-c5
1478	chrX	2399833	2399845	chrX	2408211	2408223	roo	5	8378	4.5	5.5	5.0	0.8	8390	chrX	2399833	intergenic	not near genes	chrX	2404028	intergenic	not near genes	chrX	2408223	intergenic	not near genes	chrX_5_2400001	chrX_2400001	D20-c5
1485	chrX	3493071	3493114	chrX	3502255	3502298	roo	6	9184	2.0	1.5	1.8	2.1	9227	chrX	3493071	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502298	intron,intron	CR44999 +,Gas8 -	chrX_6_3495001	chrX_3495001	D20-c5
1488	chrX	3726751	3726777	chrX	3730173	3730199	NOF	5	3422	0.0	0.0	0.0	5.0	3448	chrX	3726751	intron	tlk +	chrX	3728475	intron	tlk +	chrX	3730199	intron	tlk +	chrX_5_3725001	chrX_3725001	D20-c5
1494	chrX	4157872	4157915	chrX	4164950	4164992	297	5	7077	2.5	1.5	2.0	1.7	7120	chrX	4157872	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4164992	intron	Fas2 -	chrX_5_4160001	chrX_4160001	D20-c5
1501	chrX	5338686	5338732	chrX	5339963	5340010	jockey	6	1278	1.0	4.0	2.5	1.7	1324	chrX	5338686	intergenic	not near genes	chrX	5339348	intergenic	not near genes	chrX	5340010	intergenic	SK +	chrX_6_5335001	chrX_5335001	D20-c5
1504	chrX	6562798	6562845	chrX	6571305	6571352	Tirant	13	8507	0.5	2.5	1.5	5.2	8554	chrX	6562798	intron	CG34417 +	chrX	6567075	intron	CG34417 +	chrX	6571352	intron	CG34417 +	chrX_13_6565001	chrX_6565001	D20-c5
1509	chrX	8031406	8031449	chrX	8035740	8035783	Juan	4	4334	2.5	0.5	1.5	1.6	4377	chrX	8031406	intergenic	not near genes	chrX	8033594	intergenic	not near genes	chrX	8035783	3` UTR	CG2233 -	chrX_4_8030001	chrX_8030001	D20-c5
1511	chrX	8922309	8922360	chrX	8922768	8922819	jockey	4	459	1.0	1.0	1.0	2.0	510	chrX	8922309	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922819	intron	rdgA +	chrX_4_8920001	chrX_8920001	D20-c5
1513	chrX	9508115	9508158	chrX	9509658	9509701	jockey	7	1543	0.5	3.5	2.0	2.3	1586	chrX	9508115	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509701	intron	CG32700 -	chrX_7_9505001	chrX_9505001	D20-c5
1514	chrX	9575784	9575814	chrX	9576132	9576163	mdg3	5	348	1.0	2.5	1.8	1.8	379	chrX	9575784	intron,exon	CG32699 -,CG42395 -	chrX	9575974	intron,intron	CG32699 -,CG42395 -	chrX	9576163	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	D20-c5
1518	chrX	10138224	10138232	chrX	10145753	10145761	412	5	7529	3.0	2.0	2.5	1.4	7537	chrX	10138224	intron,intron	RhoU +,CR44894 -	chrX	10141992	intron,intron	RhoU +,CR44894 -	chrX	10145761	intron,intron	RhoU +,CR44894 -	chrX_5_10140001	chrX_10140001	D20-c5
1520	chrX	10686035	10686065	chrX	10691197	10691227	roo	5	5162	0.0	1.0	0.5	3.3	5192	chrX	10686035	intron	X11Lbeta +	chrX	10688631	intron	X11Lbeta +	chrX	10691227	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	D20-c5
1522	chrX	10772660	10772698	chrX	10772768	10772806	Tirant	8	107	1.0	2.0	1.5	3.2	146	chrX	10772660	intron	CG15211 +	chrX	10772733	intron	CG15211 +	chrX	10772806	intron	CG15211 +	chrX_8_10770001	chrX_10770001	D20-c5
1525	chrX	11268546	11268593	chrX	11270064	11270105	hopper2	9	1517	0.0	2.0	1.0	4.5	1559	chrX	11268546	intron	CG44422 -	chrX	11269326	intron	CG44422 -	chrX	11270105	intron	CG44422 -	chrX_9_11265001	chrX_11265001	D20-c5
1527	chrX	11312054	11312082	chrX	11319422	11319460	Stalker2	6	7376	1.5	0.5	1.0	3.0	7406	chrX	11312054	intergenic	not near genes	chrX	11315757	intergenic	not near genes	chrX	11319460	intergenic	not near genes	chrX_6_11315001	chrX_11315001	D20-c5
1533	chrX	13429461	13429477	chrX	13430634	13430651	jockey	4	1173	1.5	2.5	2.0	1.3	1190	chrX	13429461	intergenic	not near genes	chrX	13430056	intergenic	not near genes	chrX	13430651	intergenic	not near genes	chrX_4_13430001	chrX_13430001	D20-c5
1539	chrX	14105037	14105052	chrX	14114213	14114228	roo	4	9175	1.5	4.0	2.8	1.1	9191	chrX	14105037	intergenic	not near genes	chrX	14109632	intergenic	not near genes	chrX	14114228	5` UTR	CR44657 +	chrX_4_14105001	chrX_14105001	D20-c5
1544	chrX	14636446	14636485	chrX	14641912	14641951	I-element	6	5465	0.0	2.5	1.2	2.7	5505	chrX	14636446	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641951	intron	NetA -	chrX_6_14635001	chrX_14635001	D20-c5
1545	chrX	14936843	14936862	chrX	14946125	14946142	roo	5	9282	1.0	1.0	1.0	2.5	9299	chrX	14936843	intron	pdgy -	chrX	14941492	intron	pdgy -	chrX	14946142	intron	pdgy -	chrX_5_14940001	chrX_14940001	D20-c5
1548	chrX	15413035	15413061	chrX	15417362	15417388	Juan	7	4327	3.0	2.0	2.5	2.0	4353	chrX	15413035	intron	Cngl -	chrX	15415212	intron	Cngl -	chrX	15417388	intron	Cngl -	chrX_7_15415001	chrX_15415001	D20-c5
1549	chrX	15435687	15435701	chrX	15436145	15436159	rover	4	458	0.5	3.0	1.8	1.4	472	chrX	15435687	intron	Cngl -	chrX	15435923	intron	Cngl -	chrX	15436159	intron	Cngl -	chrX_4_15435001	chrX_15435001	D20-c5
1552	chrX	16492624	16492667	chrX	16498226	16498268	mdg3	6	5600	1.0	1.5	1.2	2.7	5644	chrX	16492624	intron	para -	chrX	16495446	intron	para -	chrX	16498268	intron	para -	chrX_6_16495001	chrX_16495001	D20-c5
1560	chrX	17792937	17792970	chrX	17796260	17796293	flea	6	3323	1.0	2.5	1.8	2.1	3356	chrX	17792937	intron	OdsH +	chrX	17794615	intron	OdsH +	chrX	17796293	intron	OdsH +	chrX_6_17790001	chrX_17790001	D20-c5
1573	chrX	19472104	19472133	chrX	19472699	19472712	jockey	5	589	1.5	1.5	1.5	2.0	608	chrX	19472104	intergenic	kek5 +	chrX	19472408	intergenic	kek5 +	chrX	19472712	intergenic	not near genes	chrX_5_19470001	chrX_19470001	D20-c5
1574	chrX	19710053	19710091	chrX	19711864	19711902	S-element	10	1811	3.0	2.5	2.8	2.6	1849	chrX	19710053	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711902	intron	meso18E -	chrX_10_19710001	chrX_19710001	D20-c5
1581	chrX	20940714	20940737	chrX	20942207	20942230	hobo	4	1494	1.5	2.5	2.0	1.3	1516	chrX	20940714	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942230	intergenic	not near genes	chrX_4_20940001	chrX_20940001	D20-c5
1585	chrX	21474381	21474420	chrX	21474768	21474811	1731	6	390	0.5	0.5	0.5	4.0	430	chrX	21474381	intergenic	not near genes	chrX	21474596	intergenic	not near genes	chrX	21474811	intergenic	not near genes	chrX_6_21470001	chrX_21470001	D20-c5
1588	chrX	22771484	22771516	chrX	22774800	22774818	297	5	3313	1.5	1.0	1.2	2.3	3334	chrX	22771484	intron	CR44997 +	chrX	22773151	intron	CR44997 +	chrX	22774818	intron	CR44997 +	chrX_5_22770001	chrX_22770001	D20-c5
1591	chrX	22987085	22987106	chrX	22989769	22989790	Burdock	4	2684	0.5	1.5	1.0	2.0	2705	chrX	22987085	intron,intron	stnA -,stnB -	chrX	22988438	intron,intron	stnA -,stnB -	chrX	22989790	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	D20-c5