SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47442 47473 chr2L 52570 52603 jockey 5 5130 7.0 4.5 5.8 0.7 5161 chr2L 47442 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52603 intron Cda5 - chr2L_5_50001 chr2L_50001 D20-c5 2 chr2L 73768 73805 chr2L 73902 73933 9 132 13.5 8.0 10.8 0.8 165 chr2L 73768 3` UTR,intron CR44987 -,galectin + chr2L 73850 intron galectin + chr2L 73933 intron galectin + chr2L_9_70001 chr2L_70001 D20-c5 3 chr2L 134122 134164 chr2L 134231 134273 4 109 4.0 1.0 2.5 1.1 151 chr2L 134122 intron,3` UTR CG11455 +,Gs1 + chr2L 134198 intron,3` UTR CG11455 +,Gs1 + chr2L 134273 intron,3` UTR CG11455 +,Gs1 + chr2L_4_130001 chr2L_130001 D20-c5 4 chr2L 325115 325146 chr2L 325217 325247 6 102 6.5 5.0 5.8 0.9 132 chr2L 325115 intron Plc21C + chr2L 325181 intron Plc21C + chr2L 325247 intron Plc21C + chr2L_6_325001 chr2L_325001 D20-c5 5 chr2L 347863 347918 chr2L 355388 355443 blood 10 7524 1.0 2.0 1.5 4.0 7580 chr2L 347863 3` UTR Plc21C + chr2L 351653 intron Plc21C + chr2L 355443 3` UTR Plc21C + chr2L_10_350001 chr2L_350001 D20-c5 6 chr2L 371441 371453 chr2L 371544 371557 5 104 1.5 4.5 3.0 1.2 116 chr2L 371441 intergenic not near genes chr2L 371499 intergenic not near genes chr2L 371557 intergenic not near genes chr2L_5_370001 chr2L_370001 D20-c5 7 chr2L 395736 395766 chr2L 395843 395873 5 107 3.5 7.5 5.5 0.8 137 chr2L 395736 intergenic CR43718 + chr2L 395804 intergenic CR43718 + chr2L 395873 intergenic CR43718 + chr2L_5_395001 chr2L_395001 D20-c5 8 chr2L 467335 467354 chr2L 467459 467478 7 124 7.5 7.0 7.2 0.9 143 chr2L 467335 intron CG4297 - chr2L 467406 intron CG4297 - chr2L 467478 intron CG4297 - chr2L_7_465001 chr2L_465001 D20-c5 9 chr2L 590596 590636 chr2L 590722 590762 5 126 9.5 9.5 9.5 0.5 166 chr2L 590596 intron Gsc - chr2L 590679 intron Gsc - chr2L 590762 intron Gsc - chr2L_5_590001 chr2L_590001 D20-c5 10 chr2L 632714 632738 chr2L 632786 632843 6 97 6.5 7.5 7.0 0.8 129 chr2L 632714 intergenic not near genes chr2L 632778 intergenic not near genes chr2L 632843 intergenic not near genes chr2L_6_630001 chr2L_630001 D20-c5 11 chr2L 668407 668453 chr2L 668512 668558 5 105 7.5 9.0 8.2 0.5 151 chr2L 668407 intron ds - chr2L 668482 intron ds - chr2L 668558 intron ds - chr2L_5_665001 chr2L_665001 D20-c5 12 chr2L 763569 763630 chr2L 763670 763731 17 100 8.5 7.5 8.0 1.9 162 chr2L 763569 intergenic not near genes chr2L 763650 intergenic not near genes chr2L 763731 intergenic not near genes chr2L_17_760001 chr2L_760001 D20-c5 13 chr2L 770444 770490 chr2L 772249 772286 Bari1 14 1804 4.0 2.0 3.0 3.5 1842 chr2L 770444 intergenic not near genes chr2L 771365 intergenic not near genes chr2L 772286 intergenic CR44614 + chr2L_14_770001 chr2L_770001 D20-c5 14 chr2L 844934 844967 chr2L 845045 845079 6 112 7.5 9.0 8.2 0.7 145 chr2L 844934 intron drongo - chr2L 845006 intron drongo - chr2L 845079 intron drongo - chr2L_6_845001 chr2L_845001 D20-c5 15 chr2L 849449 849468 chr2L 849565 849583 5 116 7.0 5.0 6.0 0.7 134 chr2L 849449 intron drongo - chr2L 849516 intron drongo - chr2L 849583 intron drongo - chr2L_5_845001 chr2L_845001 D20-c5 16 chr2L 877819 877873 chr2L 877925 877969 9 105 3.0 2.0 2.5 2.6 150 chr2L 877819 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877969 3` UTR,exon CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 D20-c5 17 chr2L 958935 958985 chr2L 959087 959137 8 152 11.5 10.0 10.8 0.7 202 chr2L 958935 intergenic not near genes chr2L 959036 intergenic not near genes chr2L 959137 intergenic not near genes chr2L_8_955001 chr2L_955001 D20-c5 18 chr2L 1066077 1066115 chr2L 1066183 1066221 5 106 16.5 15.0 15.8 0.3 144 chr2L 1066077 intron S - chr2L 1066149 intron S - chr2L 1066221 intron S - chr2L_5_1065001 chr2L_1065001 D20-c5 19 chr2L 1370238 1370278 chr2L 1370428 1370452 5 187 6.0 8.5 7.2 0.6 214 chr2L 1370238 intergenic not near genes chr2L 1370345 intergenic not near genes chr2L 1370452 intergenic not near genes chr2L_5_1370001 chr2L_1370001 D20-c5 20 chr2L 1438815 1438833 chr2L 1438904 1438938 6 101 3.5 0.5 2.0 2.0 123 chr2L 1438815 intergenic not near genes chr2L 1438876 intergenic not near genes chr2L 1438938 intergenic not near genes chr2L_6_1435001 chr2L_1435001 D20-c5 21 chr2L 1450672 1450727 chr2L 1450782 1450837 12 109 6.5 5.5 6.0 1.7 165 chr2L 1450672 intergenic not near genes chr2L 1450754 intergenic not near genes chr2L 1450837 intergenic not near genes chr2L_12_1450001 chr2L_1450001 D20-c5 22 chr2L 1458220 1458252 chr2L 1458322 1458353 10 102 7.0 6.0 6.5 1.3 133 chr2L 1458220 intergenic not near genes chr2L 1458286 intergenic not near genes chr2L 1458353 intergenic not near genes chr2L_10_1455001 chr2L_1455001 D20-c5 23 chr2L 1534045 1534087 chr2L 1534395 1534442 5 353 0.0 4.5 2.2 1.6 397 chr2L 1534045 intergenic not near genes chr2L 1534244 intergenic not near genes chr2L 1534442 intergenic not near genes chr2L_5_1530001 chr2L_1530001 D20-c5 24 chr2L 1536469 1536509 chr2L 1536625 1536666 6 157 0.0 6.0 3.0 1.5 197 chr2L 1536469 intergenic not near genes chr2L 1536568 intergenic not near genes chr2L 1536666 intergenic not near genes chr2L_6_1535001 chr2L_1535001 D20-c5 25 chr2L 1570669 1570705 chr2L 1573566 1573598 F-element 8 2896 3.5 3.5 3.5 1.8 2929 chr2L 1570669 intron haf + chr2L 1572134 intron haf + chr2L 1573598 intron haf + chr2L_8_1570001 chr2L_1570001 D20-c5 26 chr2L 1581898 1581947 chr2L 1582028 1582073 7 129 2.0 2.0 2.0 2.3 175 chr2L 1581898 intron haf + chr2L 1581986 intron haf + chr2L 1582073 intron haf + chr2L_7_1580001 chr2L_1580001 D20-c5 27 chr2L 1590962 1590984 chr2L 1591047 1591084 5 98 3.0 2.5 2.8 1.3 122 chr2L 1590962 intron haf + chr2L 1591023 intron haf + chr2L 1591084 intron haf + chr2L_5_1590001 chr2L_1590001 D20-c5 28 chr2L 1628818 1628855 chr2L 1628932 1628959 4 109 1.5 2.5 2.0 1.3 141 chr2L 1628818 intergenic not near genes chr2L 1628888 intergenic not near genes chr2L 1628959 intergenic not near genes chr2L_4_1625001 chr2L_1625001 D20-c5 29 chr2L 1634746 1634762 chr2L 1634856 1634872 7 109 7.0 5.5 6.2 1.0 126 chr2L 1634746 intergenic not near genes chr2L 1634809 intergenic not near genes chr2L 1634872 intergenic not near genes chr2L_7_1630001 chr2L_1630001 D20-c5 30 chr2L 1638145 1638182 chr2L 1638247 1638282 5 104 2.5 5.0 3.8 1.0 137 chr2L 1638145 intergenic not near genes chr2L 1638214 intergenic not near genes chr2L 1638282 intergenic not near genes chr2L_5_1635001 chr2L_1635001 D20-c5 31 chr2L 1711335 1711385 chr2L 1711684 1711734 mdg3 5 349 5.0 3.0 4.0 1.0 399 chr2L 1711335 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711734 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 D20-c5 32 chr2L 1883406 1883445 chr2L 1884005 1884047 6 599 0.0 1.0 0.5 4.0 641 chr2L 1883406 intron CG15358 - chr2L 1883726 intron CG15358 - chr2L 1884047 exon CG15358 - chr2L_6_1880001 chr2L_1880001 D20-c5 33 chr2L 1910524 1910568 chr2L 1910638 1910666 4 109 1.0 0.5 0.8 2.2 142 chr2L 1910524 intron CG7337 + chr2L 1910595 intron CG7337 + chr2L 1910666 intron CG7337 + chr2L_4_1910001 chr2L_1910001 D20-c5 34 chr2L 1957927 1957953 chr2L 1958033 1958059 6 105 2.0 3.0 2.5 1.7 132 chr2L 1957927 intron erm - chr2L 1957993 intron erm - chr2L 1958059 intron erm - chr2L_6_1955001 chr2L_1955001 D20-c5 35 chr2L 2004831 2004870 chr2L 2005299 2005338 5 468 3.0 0.5 1.8 1.8 507 chr2L 2004831 intron CG33543 - chr2L 2005084 intron CG33543 - chr2L 2005338 intron CG33543 - chr2L_5_2005001 chr2L_2005001 D20-c5 36 chr2L 2100396 2100405 chr2L 2109528 2109579 roo 8 9164 3.0 4.0 3.5 1.8 9183 chr2L 2100396 intron dpr3 - chr2L 2104988 intron dpr3 - chr2L 2109579 intron dpr3 - chr2L_8_2100001 chr2L_2100001 D20-c5 37 chr2L 2112109 2112143 chr2L 2119773 2119830 opus 7 7682 3.5 4.5 4.0 1.4 7721 chr2L 2112109 intergenic not near genes chr2L 2115970 intergenic not near genes chr2L 2119830 intergenic not near genes chr2L_7_2115001 chr2L_2115001 D20-c5 38 chr2L 2250397 2250423 chr2L 2251189 2251214 4 792 4.0 0.0 2.0 1.3 817 chr2L 2250397 intergenic Ser12 - chr2L 2250806 exon Ser12 - chr2L 2251214 exon Ser12 - chr2L_4_2250001 chr2L_2250001 D20-c5 39 chr2L 2256446 2256475 chr2L 2256551 2256580 7 103 3.0 4.5 3.8 1.5 134 chr2L 2256446 intergenic not near genes chr2L 2256513 intergenic not near genes chr2L 2256580 intergenic not near genes chr2L_7_2255001 chr2L_2255001 D20-c5 40 chr2L 2260784 2260830 chr2L 2260895 2260941 13 110 2.5 4.5 3.5 2.9 157 chr2L 2260784 intergenic not near genes chr2L 2260862 intergenic not near genes chr2L 2260941 intergenic not near genes chr2L_13_2260001 chr2L_2260001 D20-c5 41 chr2L 2282975 2283015 chr2L 2283160 2283199 9 184 0.5 2.0 1.2 4.1 224 chr2L 2282975 intergenic not near genes chr2L 2283087 intergenic not near genes chr2L 2283199 intergenic not near genes chr2L_9_2280001 chr2L_2280001 D20-c5 42 chr2L 2294022 2294068 chr2L 2299252 2299288 copia 10 5228 2.5 2.5 2.5 2.9 5266 chr2L 2294022 intergenic not near genes chr2L 2296655 intergenic not near genes chr2L 2299288 intergenic not near genes chr2L_10_2295001 chr2L_2295001 D20-c5 43 chr2L 2299306 2299356 chr2L 2299409 2299448 11 102 3.0 1.5 2.2 3.4 142 chr2L 2299306 intergenic not near genes chr2L 2299377 intergenic not near genes chr2L 2299448 intergenic not near genes chr2L_11_2295001 chr2L_2295001 D20-c5 44 chr2L 1375480 1375530 chr2L 2353394 2353444 6 977914 12.5 22.5 17.5 0.3 977964 chr2L 1375480 intergenic not near genes chr2L 1864462 intron CG31663 - chr2L 2353444 intron,exon CG9967 -,eys + chr2L_6_1860001 chr2L_1860001 D20-c5 45 chr2L 2392148 2392177 chr2L 2392282 2392312 6 131 2.5 2.5 2.5 1.7 164 chr2L 2392148 intron VGlut + chr2L 2392230 intron VGlut + chr2L 2392312 intron VGlut + chr2L_6_2390001 chr2L_2390001 D20-c5 46 chr2L 2503694 2503726 chr2L 2504498 2504530 6 804 1.5 1.0 1.2 2.7 836 chr2L 2503694 intergenic not near genes chr2L 2504112 intergenic not near genes chr2L 2504530 intergenic not near genes chr2L_6_2500001 chr2L_2500001 D20-c5 47 chr2L 2565525 2565554 chr2L 2571612 2571652 297 5 6087 1.5 2.0 1.8 1.8 6127 chr2L 2565525 exon Cyp309a2 - chr2L 2568588 intron Cyp309a2 - chr2L 2571652 exon Cyp309a2 - chr2L_5_2565001 chr2L_2565001 D20-c5 48 chr2L 2587791 2587840 chr2L 2587894 2587944 11 100 1.5 2.0 1.8 3.9 153 chr2L 2587791 intergenic not near genes chr2L 2587868 intergenic not near genes chr2L 2587944 intergenic not near genes chr2L_11_2585001 chr2L_2585001 D20-c5 49 chr2L 2618011 2618030 chr2L 2618115 2618132 7 103 3.5 1.5 2.5 2.0 121 chr2L 2618011 intergenic not near genes chr2L 2618072 intergenic not near genes chr2L 2618132 intergenic not near genes chr2L_7_2615001 chr2L_2615001 D20-c5 50 chr2L 2618328 2618378 chr2L 2618452 2618502 6 124 8.5 8.5 8.5 0.6 174 chr2L 2618328 intergenic not near genes chr2L 2618415 intergenic not near genes chr2L 2618502 intergenic not near genes chr2L_6_2615001 chr2L_2615001 D20-c5 51 chr2L 2620593 2620646 chr2L 2620722 2620775 5 129 7.5 4.0 5.8 0.7 182 chr2L 2620593 3` UTR CG43403 + chr2L 2620684 3` UTR CG43403 + chr2L 2620775 3` UTR CG43403 + chr2L_5_2620001 chr2L_2620001 D20-c5 52 chr2L 2661184 2661230 chr2L 2663047 2663071 I-element 8 1859 1.5 7.0 4.2 1.5 1887 chr2L 2661184 intergenic not near genes chr2L 2662128 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_8_2660001 chr2L_2660001 D20-c5 53 chr2L 2667605 2667650 chr2L 2667709 2667754 4 104 4.0 5.5 4.8 0.7 149 chr2L 2667605 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667754 intergenic not near genes chr2L_4_2665001 chr2L_2665001 D20-c5 54 chr2L 2698855 2698895 chr2L 2698967 2699007 5 110 0.0 3.5 1.8 1.8 152 chr2L 2698855 intron CG31690 + chr2L 2698931 intron CG31690 + chr2L 2699007 intron CG31690 + chr2L_5_2695001 chr2L_2695001 D20-c5 55 chr2L 2703426 2703441 chr2L 2703535 2703550 4 109 10.5 9.5 10.0 0.4 124 chr2L 2703426 intron CG31690 + chr2L 2703488 intron CG31690 + chr2L 2703550 intron CG31690 + chr2L_4_2700001 chr2L_2700001 D20-c5 56 chr2L 2772585 2772620 chr2L 2779194 2779229 297 5 6607 4.5 3.0 3.8 1.0 6644 chr2L 2772585 3` UTR Syt1 - chr2L 2775907 intron Syt1 - chr2L 2779229 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 D20-c5 57 chr2L 2793921 2793970 chr2L 2794026 2794075 6 105 2.5 3.5 3.0 1.5 154 chr2L 2793921 intron Syt1 - chr2L 2793998 intron Syt1 - chr2L 2794075 intron Syt1 - chr2L_6_2790001 chr2L_2790001 D20-c5 58 chr2L 2937426 2937451 chr2L 2937528 2937549 4 100 4.0 2.5 3.2 1.0 123 chr2L 2937426 intron lilli + chr2L 2937488 intron lilli + chr2L 2937549 intron lilli + chr2L_4_2935001 chr2L_2935001 D20-c5 59 chr2L 3026223 3026267 chr2L 3026855 3026898 13 634 16.0 33.0 24.5 0.5 675 chr2L 3026223 3` UTR CG3542 + chr2L 3026560 3` UTR CG3605 - chr2L 3026898 exon CG3605 - chr2L_13_3025001 chr2L_3025001 D20-c5 60 chr2L 3044883 3044918 chr2L 3045002 3045040 7 120 5.0 5.0 5.0 1.2 157 chr2L 3044883 intron v(2)k05816 + chr2L 3044962 intron v(2)k05816 + chr2L 3045040 intron v(2)k05816 + chr2L_7_3040001 chr2L_3040001 D20-c5 61 chr2L 3078468 3078515 chr2L 3078803 3078850 6 335 8.0 6.0 7.0 0.8 382 chr2L 3078468 intron toc - chr2L 3078659 intron toc - chr2L 3078850 intron toc - chr2L_6_3075001 chr2L_3075001 D20-c5 62 chr2L 3100268 3100289 chr2L 3100487 3100507 4 219 6.5 8.5 7.5 0.5 239 chr2L 3100268 intron toc - chr2L 3100388 intron toc - chr2L 3100507 intron toc - chr2L_4_3100001 chr2L_3100001 D20-c5 63 chr2L 3132743 3132764 chr2L 3133922 3133946 5 1182 1.5 5.5 3.5 1.1 1203 chr2L 3132743 intron toc - chr2L 3133344 intron toc - chr2L 3133946 intron toc - chr2L_5_3130001 chr2L_3130001 D20-c5 64 chr2L 3147260 3147299 chr2L 3147361 3147401 5 98 4.0 8.5 6.2 0.7 141 chr2L 3147260 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147401 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 D20-c5 65 chr2L 3192187 3192225 chr2L 3192318 3192361 4 134 5.5 3.5 4.5 0.7 174 chr2L 3192187 exon CG34393 - chr2L 3192274 intron CG34393 - chr2L 3192361 intron CG34393 - chr2L_4_3190001 chr2L_3190001 D20-c5 66 chr2L 3193816 3193854 chr2L 3193927 3193965 4 110 7.5 6.0 6.8 0.5 149 chr2L 3193816 intron CG34393 - chr2L 3193890 intron CG34393 - chr2L 3193965 intron CG34393 - chr2L_4_3190001 chr2L_3190001 D20-c5 67 chr2L 3202718 3202763 chr2L 3210172 3210217 mdg1 6 7454 2.0 1.0 1.5 2.4 7499 chr2L 3202718 intergenic not near genes chr2L 3206468 intergenic not near genes chr2L 3210217 intergenic CR45336 + chr2L_6_3205001 chr2L_3205001 D20-c5 68 chr2L 3221481 3221510 chr2L 3221721 3221750 4 238 3.0 2.5 2.8 1.1 269 chr2L 3221481 intergenic not near genes chr2L 3221616 intergenic not near genes chr2L 3221750 intergenic not near genes chr2L_4_3220001 chr2L_3220001 D20-c5 69 chr2L 3251484 3251511 chr2L 3259072 3259101 springer 4 7590 2.0 4.0 3.0 1.0 7617 chr2L 3251484 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259101 intergenic not near genes chr2L_4_3255001 chr2L_3255001 D20-c5 70 chr2L 3286120 3286145 chr2L 3286223 3286243 4 102 4.0 5.0 4.5 0.7 123 chr2L 3286120 intergenic not near genes chr2L 3286182 intergenic not near genes chr2L 3286243 intergenic not near genes chr2L_4_3285001 chr2L_3285001 D20-c5 71 chr2L 3523016 3523046 chr2L 3523154 3523184 8 136 3.5 5.5 4.5 1.5 168 chr2L 3523016 exon Sr-CIV - chr2L 3523100 intron Sr-CIV - chr2L 3523184 exon Sr-CIV - chr2L_8_3520001 chr2L_3520001 D20-c5 72 chr2L 3627866 3627908 chr2L 3627979 3628021 6 113 3.0 3.0 3.0 1.5 155 chr2L 3627866 intron for - chr2L 3627944 intron for - chr2L 3628021 intron for - chr2L_6_3625001 chr2L_3625001 D20-c5 73 chr2L 3734635 3734652 chr2L 3734735 3734753 5 101 5.0 4.0 4.5 0.9 118 chr2L 3734635 intron CG10019 + chr2L 3734694 intron CG10019 + chr2L 3734753 intron CG10019 + chr2L_5_3730001 chr2L_3730001 D20-c5 74 chr2L 3831830 3831842 chr2L 3831935 3831946 4 105 2.0 0.5 1.2 1.8 116 chr2L 3831830 intergenic not near genes chr2L 3831888 intergenic not near genes chr2L 3831946 intergenic not near genes chr2L_4_3830001 chr2L_3830001 D20-c5 75 chr2L 3891876 3891922 chr2L 3891986 3892032 4 110 0.5 1.5 1.0 2.0 156 chr2L 3891876 intron capu - chr2L 3891954 intron capu - chr2L 3892032 intron capu - chr2L_4_3890001 chr2L_3890001 D20-c5 76 chr2L 3989988 3990040 chr2L 3990113 3990165 4 125 7.0 9.0 8.0 0.4 177 chr2L 3989988 intron fred - chr2L 3990076 intron fred - chr2L 3990165 intron fred - chr2L_4_3990001 chr2L_3990001 D20-c5 77 chr2L 3997522 3997578 chr2L 3997638 3997691 4 114 0.0 1.5 0.8 2.2 169 chr2L 3997522 intergenic not near genes chr2L 3997606 intergenic not near genes chr2L 3997691 intergenic not near genes chr2L_4_3995001 chr2L_3995001 D20-c5 78 chr2L 4841046 4841102 chr2L 4841147 4841203 14 100 5.0 2.5 3.8 2.9 157 chr2L 4841046 intron CG12194 + chr2L 4841124 intron CG12194 + chr2L 4841203 3` UTR CG12194 + chr2L_14_4840001 chr2L_4840001 D20-c5 79 chr2L 4862260 4862303 chr2L 4862361 4862404 10 100 4.5 1.5 3.0 2.5 144 chr2L 4862260 intron pog + chr2L 4862332 intron pog + chr2L 4862404 intron pog + chr2L_10_4860001 chr2L_4860001 D20-c5 80 chr2L 4925651 4925695 chr2L 4925755 4925799 4 104 1.0 2.5 1.8 1.4 148 chr2L 4925651 intron hoe1 - chr2L 4925725 intron hoe1 - chr2L 4925799 intron hoe1 - chr2L_4_4925001 chr2L_4925001 D20-c5 81 chr2L 5207796 5207842 chr2L 5213781 5213827 8 5985 24.0 19.0 21.5 0.4 6031 chr2L 5207796 exon Cyp28d2 + chr2L 5210812 exon Cyp28d1 + chr2L 5213827 intron CG7742 - chr2L_8_5210001 chr2L_5210001 D20-c5 82 chr2L 5262503 5262541 chr2L 5262605 5262643 19 101 2.5 3.0 2.8 5.0 140 chr2L 5262503 intron tkv - chr2L 5262573 intron tkv - chr2L 5262643 intron tkv - chr2L_19_5260001 chr2L_5260001 D20-c5 83 chr2L 5378415 5378447 chr2L 5378519 5378547 4 103 2.5 3.0 2.8 1.1 132 chr2L 5378415 intergenic not near genes chr2L 5378481 intergenic not near genes chr2L 5378547 intergenic not near genes chr2L_4_5375001 chr2L_5375001 D20-c5 84 chr2L 5397993 5398033 chr2L 5398095 5398136 6 100 2.0 1.5 1.8 2.1 143 chr2L 5397993 intergenic not near genes chr2L 5398064 intergenic not near genes chr2L 5398136 intergenic not near genes chr2L_6_5395001 chr2L_5395001 D20-c5 85 chr2L 5827688 5827733 chr2L 5836721 5836766 roo 6 9033 0.5 0.5 0.5 4.0 9078 chr2L 5827688 intron TrissinR + chr2L 5832227 intron TrissinR + chr2L 5836766 intron TrissinR + chr2L_6_5830001 chr2L_5830001 D20-c5 86 chr2L 5839153 5839186 chr2L 5839267 5839299 9 110 2.5 3.0 2.8 2.4 146 chr2L 5839153 intron TrissinR + chr2L 5839226 intron TrissinR + chr2L 5839299 intron TrissinR + chr2L_9_5835001 chr2L_5835001 D20-c5 87 chr2L 5864645 5864694 chr2L 5865590 5865639 8 943 1.5 1.0 1.2 3.6 994 chr2L 5864645 intron rau - chr2L 5865142 intron rau - chr2L 5865639 intron rau - chr2L_8_5865001 chr2L_5865001 D20-c5 88 chr2L 5870450 5870502 chr2L 5870552 5870603 11 101 1.0 2.0 1.5 4.4 153 chr2L 5870450 intron rau - chr2L 5870526 intron rau - chr2L 5870603 intron rau - chr2L_11_5870001 chr2L_5870001 D20-c5 89 chr2L 5931298 5931322 chr2L 5931435 5931459 6 137 2.0 1.0 1.5 2.4 161 chr2L 5931298 intron dsf + chr2L 5931378 intron dsf + chr2L 5931459 intron dsf + chr2L_6_5930001 chr2L_5930001 D20-c5 90 chr2L 5944560 5944579 chr2L 5948977 5948996 4 4417 25.0 10.5 17.8 0.2 4436 chr2L 5944560 intron Gpdh + chr2L 5946778 intron Gpdh + chr2L 5948996 intergenic Gpdh +,CG9044 + chr2L_4_5945001 chr2L_5945001 D20-c5 91 chr2L 5989018 5989047 chr2L 5989118 5989148 5 97 1.0 0.0 0.5 3.3 130 chr2L 5989018 intergenic ifc +,lid - chr2L 5989083 intergenic ifc +,lid - chr2L 5989148 intergenic lid -,ifc + chr2L_5_5985001 chr2L_5985001 D20-c5 92 chr2L 6050427 6050459 chr2L 6050556 6050588 6 129 4.0 0.5 2.2 1.9 161 chr2L 6050427 3` UTR CG12393 + chr2L 6050508 intergenic CG12393 +,CG9135 + chr2L 6050588 intergenic CG12393 +,CG9135 + chr2L_6_6050001 chr2L_6050001 D20-c5 93 chr2L 6079487 6079528 chr2L 6079586 6079635 10 106 4.0 1.5 2.8 2.6 148 chr2L 6079487 5` UTR CR9162 + chr2L 6079561 5` UTR CR9162 + chr2L 6079635 5` UTR CR9162 + chr2L_10_6075001 chr2L_6075001 D20-c5 94 chr2L 6154452 6154476 chr2L 6154538 6154577 6 98 2.5 0.5 1.5 2.4 125 chr2L 6154452 intron CG31639 - chr2L 6154514 intron CG31639 - chr2L 6154577 intron CG31639 - chr2L_6_6150001 chr2L_6150001 D20-c5 95 chr2L 6185901 6185945 chr2L 6186006 6186049 8 103 2.5 2.5 2.5 2.3 148 chr2L 6185901 intron CG34380 + chr2L 6185975 intron CG34380 + chr2L 6186049 intron CG34380 + chr2L_8_6185001 chr2L_6185001 D20-c5 96 chr2L 6241636 6241676 chr2L 6241739 6241770 5 101 2.5 0.5 1.5 2.0 134 chr2L 6241636 intergenic not near genes chr2L 6241703 intergenic not near genes chr2L 6241770 intergenic not near genes chr2L_5_6240001 chr2L_6240001 D20-c5 97 chr2L 6242951 6242975 chr2L 6243074 6243097 6 122 2.5 1.0 1.8 2.1 146 chr2L 6242951 intergenic not near genes chr2L 6243024 intergenic not near genes chr2L 6243097 intergenic not near genes chr2L_6_6240001 chr2L_6240001 D20-c5 98 chr2L 6261576 6261611 chr2L 6261753 6261787 4 174 0.5 2.0 1.2 1.8 211 chr2L 6261576 intron Ddr + chr2L 6261682 intron Ddr + chr2L 6261787 intron Ddr + chr2L_4_6260001 chr2L_6260001 D20-c5 99 chr2L 6363147 6363181 chr2L 6366098 6366132 Burdock 10 2950 1.0 2.0 1.5 4.0 2985 chr2L 6363147 intergenic not near genes chr2L 6364640 intergenic not near genes chr2L 6366132 intergenic not near genes chr2L_10_6360001 chr2L_6360001 D20-c5 100 chr2L 6426832 6426884 chr2L 6445117 6445169 roo 11 18285 1.5 3.0 2.2 3.4 18337 chr2L 6426832 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445169 exon CG9527 - chr2L_11_6435001 chr2L_6435001 D20-c5 101 chr2L 6463542 6463582 chr2L 6463651 6463697 8 111 5.0 4.0 4.5 1.5 155 chr2L 6463542 exon CG16947 - chr2L 6463620 exon CG16947 - chr2L 6463697 exon CG16947 - chr2L_8_6460001 chr2L_6460001 D20-c5 102 chr2L 6590078 6590111 chr2L 6590181 6590214 8 101 3.5 1.0 2.2 2.5 136 chr2L 6590078 intron CG11319 - chr2L 6590146 intron CG11319 - chr2L 6590214 intron CG11319 - chr2L_8_6590001 chr2L_6590001 D20-c5 103 chr2L 6626879 6626908 chr2L 6626988 6627018 5 109 3.0 4.5 3.8 1.0 139 chr2L 6626879 intron Oatp26F - chr2L 6626948 intron Oatp26F - chr2L 6627018 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 D20-c5 104 chr2L 6771974 6772019 chr2L 6772083 6772131 11 110 2.5 4.5 3.5 2.4 157 chr2L 6771974 intron CG11321 - chr2L 6772052 intron CG11321 - chr2L 6772131 intron CG11321 - chr2L_11_6770001 chr2L_6770001 D20-c5 105 chr2L 6772566 6772595 chr2L 6772674 6772701 6 105 4.5 2.5 3.5 1.3 135 chr2L 6772566 5` UTR CG11321 - chr2L 6772634 5` UTR CG11321 - chr2L 6772701 5` UTR CG11321 - chr2L_6_6770001 chr2L_6770001 D20-c5 106 chr2L 6787901 6787930 chr2L 6789828 6789861 5 1928 16.5 6.5 11.5 0.4 1960 chr2L 6787901 intergenic not near genes chr2L 6788881 intergenic not near genes chr2L 6789861 3` UTR nrv2 - chr2L_5_6785001 chr2L_6785001 D20-c5 107 chr2L 6799520 6799562 chr2L 6799632 6799675 9 113 2.0 0.5 1.2 4.1 155 chr2L 6799520 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799675 intergenic CR43610 +,CG17376 - chr2L_9_6795001 chr2L_6795001 D20-c5 108 chr2L 6823169 6823193 chr2L 6823279 6823302 4 110 2.5 2.0 2.2 1.2 133 chr2L 6823169 intron sens-2 + chr2L 6823236 intron sens-2 + chr2L 6823302 intron sens-2 + chr2L_4_6820001 chr2L_6820001 D20-c5 109 chr2L 6833362 6833413 chr2L 6833474 6833525 8 111 3.0 2.0 2.5 2.3 163 chr2L 6833362 intron sens-2 + chr2L 6833444 intron sens-2 + chr2L 6833525 intron sens-2 + chr2L_8_6830001 chr2L_6830001 D20-c5 110 chr2L 6887475 6887529 chr2L 6887649 6887706 4 175 1.0 0.0 0.5 2.7 231 chr2L 6887475 intron Nlg2 + chr2L 6887590 intron Nlg2 + chr2L 6887706 intron Nlg2 + chr2L_4_6885001 chr2L_6885001 D20-c5 111 chr2L 6891426 6891458 chr2L 6891549 6891580 5 123 0.5 0.5 0.5 3.3 154 chr2L 6891426 intron Nlg2 + chr2L 6891503 intron Nlg2 + chr2L 6891580 intron Nlg2 + chr2L_5_6890001 chr2L_6890001 D20-c5 112 chr2L 7005210 7005236 chr2L 7005330 7005357 7 120 1.0 1.0 1.0 3.5 147 chr2L 7005210 intron uif - chr2L 7005284 intron uif - chr2L 7005357 intron uif - chr2L_7_7005001 chr2L_7005001 D20-c5 113 chr2L 7100955 7101015 chr2L 7101206 7101257 14 249 2.5 3.0 2.8 3.7 302 chr2L 7100955 intron Pvf3 - chr2L 7101106 intron Pvf3 - chr2L 7101257 intron Pvf3 - chr2L_14_7100001 chr2L_7100001 D20-c5 114 chr2L 7218397 7218427 chr2L 7218491 7218530 5 101 1.5 0.5 1.0 2.5 133 chr2L 7218397 intron CG13784 - chr2L 7218464 intron CG13784 - chr2L 7218530 intron CG13784 - chr2L_5_7215001 chr2L_7215001 D20-c5 115 chr2L 7325894 7325939 chr2L 7326004 7326049 9 108 3.5 2.5 3.0 2.2 155 chr2L 7325894 intergenic not near genes chr2L 7325972 intergenic not near genes chr2L 7326049 intergenic not near genes chr2L_9_7325001 chr2L_7325001 D20-c5 116 chr2L 7331667 7331706 chr2L 7331788 7331828 6 121 2.0 4.0 3.0 1.5 161 chr2L 7331667 intergenic not near genes chr2L 7331748 intergenic not near genes chr2L 7331828 intergenic not near genes chr2L_6_7330001 chr2L_7330001 D20-c5 117 chr2L 7410605 7410647 chr2L 7410866 7410908 7 261 1.0 3.5 2.2 2.2 303 chr2L 7410605 intergenic CG15818 + chr2L 7410756 intergenic CG15818 + chr2L 7410908 5` UTR CG15818 + chr2L_7_7410001 chr2L_7410001 D20-c5 118 chr2L 7502717 7502761 chr2L 7502818 7502862 9 98 1.0 2.5 1.8 3.2 145 chr2L 7502717 intron RapGAP1 - chr2L 7502790 intron RapGAP1 - chr2L 7502862 intron RapGAP1 - chr2L_9_7500001 chr2L_7500001 D20-c5 119 chr2L 7625167 7625192 chr2L 7625290 7625315 4 122 2.0 2.5 2.2 1.2 148 chr2L 7625167 intergenic not near genes chr2L 7625241 intergenic not near genes chr2L 7625315 intergenic not near genes chr2L_4_7625001 chr2L_7625001 D20-c5 120 chr2L 7775621 7775652 chr2L 7775738 7775769 4 117 4.0 3.5 3.8 0.8 148 chr2L 7775621 intergenic CG7179 - chr2L 7775695 intergenic CG7179 - chr2L 7775769 intergenic CG7179 - chr2L_4_7775001 chr2L_7775001 D20-c5 121 chr2L 7973911 7973925 chr2L 7974039 7974053 5 128 1.0 2.0 1.5 2.0 142 chr2L 7973911 intron Snoo - chr2L 7973982 intron Snoo - chr2L 7974053 intron Snoo - chr2L_5_7970001 chr2L_7970001 D20-c5 122 chr2L 7977067 7977110 chr2L 7984065 7984109 297 9 6997 2.0 5.0 3.5 2.0 7042 chr2L 7977067 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984109 intron,5` UTR Snoo -,CG7231 + chr2L_9_7980001 chr2L_7980001 D20-c5 123 chr2L 8044088 8044101 chr2L 8044192 8044205 6 104 7.0 4.0 5.5 0.9 117 chr2L 8044088 intron CG7466 + chr2L 8044146 intron CG7466 + chr2L 8044205 intron CG7466 + chr2L_6_8040001 chr2L_8040001 D20-c5 124 chr2L 8167121 8167169 chr2L 8167237 8167282 5 115 2.0 4.5 3.2 1.2 161 chr2L 8167121 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167282 intron Piezo + chr2L_5_8165001 chr2L_8165001 D20-c5 125 chr2L 8244714 8244746 chr2L 8244854 8244893 6 142 2.5 2.0 2.2 1.9 179 chr2L 8244714 intron CG8086 - chr2L 8244804 intron CG8086 - chr2L 8244893 intron CG8086 - chr2L_6_8240001 chr2L_8240001 D20-c5 126 chr2L 8323671 8323719 chr2L 8323796 8323844 11 124 4.5 1.0 2.8 2.9 173 chr2L 8323671 intron CG7781 - chr2L 8323758 intron CG7781 - chr2L 8323844 intron CG7781 - chr2L_11_8320001 chr2L_8320001 D20-c5 127 chr2L 8336929 8336940 chr2L 8337033 8337044 4 104 0.5 3.5 2.0 1.3 115 chr2L 8336929 intergenic not near genes chr2L 8336986 intergenic not near genes chr2L 8337044 intergenic not near genes chr2L_4_8335001 chr2L_8335001 D20-c5 128 chr2L 8452397 8452434 chr2L 8461593 8461630 roo 6 9192 2.5 1.5 2.0 2.0 9233 chr2L 8452397 intron fu12 - chr2L 8457014 intron fu12 - chr2L 8461630 intron fu12 - chr2L_6_8455001 chr2L_8455001 D20-c5 129 chr2L 8498189 8498209 chr2L 8498294 8498315 4 105 2.0 3.0 2.5 1.1 126 chr2L 8498189 intron Dh31 - chr2L 8498252 intron Dh31 - chr2L 8498315 intron Dh31 - chr2L_4_8495001 chr2L_8495001 D20-c5 130 chr2L 8553445 8553484 chr2L 8553617 8553656 6 172 3.0 3.0 3.0 1.5 211 chr2L 8553445 intron Sema-1a + chr2L 8553550 intron Sema-1a + chr2L 8553656 intron Sema-1a + chr2L_6_8550001 chr2L_8550001 D20-c5 131 chr2L 8594456 8594490 chr2L 8601519 8601569 297 6 7076 3.0 2.0 2.5 1.7 7113 chr2L 8594456 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598012 intron Sema-1a + chr2L 8601569 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 D20-c5 132 chr2L 8723108 8723130 chr2L 8731510 8731532 Tirant 4 8402 5.0 3.0 4.0 0.8 8424 chr2L 8723108 intron raw - chr2L 8727320 intron raw - chr2L 8731532 intron raw - chr2L_4_8725001 chr2L_8725001 D20-c5 133 chr2L 8784702 8784725 chr2L 8784838 8784861 6 136 2.5 1.5 2.0 2.0 159 chr2L 8784702 intergenic not near genes chr2L 8784782 intergenic not near genes chr2L 8784861 intergenic not near genes chr2L_6_8780001 chr2L_8780001 D20-c5 134 chr2L 8788738 8788782 chr2L 8788853 8788898 5 116 1.5 1.5 1.5 2.0 160 chr2L 8788738 intergenic not near genes chr2L 8788818 intergenic not near genes chr2L 8788898 intergenic not near genes chr2L_5_8785001 chr2L_8785001 D20-c5 135 chr2L 8799811 8799830 chr2L 8799925 8799971 4 134 1.0 1.0 1.0 2.0 160 chr2L 8799811 intergenic not near genes chr2L 8799891 intergenic not near genes chr2L 8799971 intergenic not near genes chr2L_4_8795001 chr2L_8795001 D20-c5 136 chr2L 8946703 8946731 chr2L 8946837 8946865 4 134 1.5 3.0 2.2 1.2 162 chr2L 8946703 intron C1GalTA - chr2L 8946784 intron C1GalTA - chr2L 8946865 intron C1GalTA - chr2L_4_8945001 chr2L_8945001 D20-c5 137 chr2L 8976205 8976254 chr2L 8976322 8976371 5 116 0.0 1.5 0.8 2.8 166 chr2L 8976205 intergenic not near genes chr2L 8976288 intergenic not near genes chr2L 8976371 intergenic not near genes chr2L_5_8975001 chr2L_8975001 D20-c5 138 chr2L 9000268 9000293 chr2L 9007803 9007827 roo 8 7534 4.5 0.5 2.5 2.3 7559 chr2L 9000268 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007827 intergenic not near genes chr2L_8_9000001 chr2L_9000001 D20-c5 139 chr2L 9025796 9025853 chr2L 9025905 9025946 10 106 2.0 6.0 4.0 2.0 150 chr2L 9025796 intron,3` UTR CG9582 -,CR44352 - chr2L 9025871 intron,3` UTR CG9582 -,CR44352 - chr2L 9025946 intron,3` UTR CG9582 -,CR44352 - chr2L_10_9025001 chr2L_9025001 D20-c5 140 chr2L 9084336 9084340 chr2L 16217660 16217660 39 7133322 13.5 14.0 13.8 2.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_39_12650001 chr2L_12650001 D20-c5 141 chr2L 9158777 9158783 chr2L 9158899 9158905 4 122 1.0 0.0 0.5 2.7 128 chr2L 9158777 intron CG32982 + chr2L 9158841 intron CG32982 + chr2L 9158905 intron CG32982 + chr2L_4_9155001 chr2L_9155001 D20-c5 142 chr2L 9217950 9217969 chr2L 9222762 9222781 Doc 5 4812 2.0 4.0 3.0 1.2 4831 chr2L 9217950 intron tai + chr2L 9220366 intron tai + chr2L 9222781 intron tai + chr2L_5_9220001 chr2L_9220001 D20-c5 143 chr2L 9217974 9217987 chr2L 9222750 9222799 Doc 5 4804 1.5 3.0 2.2 1.6 4825 chr2L 9217974 intron tai + chr2L 9220386 intron tai + chr2L 9222799 intron tai + chr2L_5_9220001 chr2L_9220001 D20-c5 144 chr2L 9225400 9225429 chr2L 9225503 9225532 4 104 1.5 4.5 3.0 1.0 132 chr2L 9225400 intron tai + chr2L 9225466 intron tai + chr2L 9225532 intron tai + chr2L_4_9225001 chr2L_9225001 D20-c5 145 chr2L 9227228 9227237 chr2L 9227309 9227345 4 100 3.0 0.5 1.8 1.4 117 chr2L 9227228 intron tai + chr2L 9227286 intron tai + chr2L 9227345 intron tai + chr2L_4_9225001 chr2L_9225001 D20-c5 146 chr2L 9251136 9251174 chr2L 9251258 9251296 5 121 1.5 3.5 2.5 1.4 160 chr2L 9251136 intergenic aust -,borr - chr2L 9251216 intergenic aust -,borr - chr2L 9251296 intergenic borr -,aust - chr2L_5_9250001 chr2L_9250001 D20-c5 147 chr2L 9262093 9262131 chr2L 9262220 9262261 7 129 5.5 1.5 3.5 1.6 168 chr2L 9262093 intron,3` UTR Ggamma30A +,CR45262 - chr2L 9262177 intron,3` UTR Ggamma30A +,CR45262 - chr2L 9262261 intron,intron Ggamma30A +,CR45262 - chr2L_7_9260001 chr2L_9260001 D20-c5 148 chr2L 9297353 9297399 chr2L 9297455 9297500 6 99 1.0 3.0 2.0 2.0 147 chr2L 9297353 3` UTR Ggamma30A + chr2L 9297426 3` UTR Ggamma30A + chr2L 9297500 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 D20-c5 149 chr2L 9380218 9380251 chr2L 9380338 9380362 7 118 3.5 2.0 2.8 1.8 144 chr2L 9380218 exon Shawl - chr2L 9380290 intron Shawl - chr2L 9380362 intron Shawl - chr2L_7_9380001 chr2L_9380001 D20-c5 150 chr2L 9454961 9455006 chr2L 9455080 9455133 8 124 0.5 2.0 1.2 3.6 172 chr2L 9454961 intron numb + chr2L 9455047 intron numb + chr2L 9455133 intron numb + chr2L_8_9455001 chr2L_9455001 D20-c5 151 chr2L 9456920 9456960 chr2L 9457026 9457066 6 106 1.5 1.5 1.5 2.4 146 chr2L 9456920 intron numb + chr2L 9456993 intron numb + chr2L 9457066 intron numb + chr2L_6_9455001 chr2L_9455001 D20-c5 152 chr2L 9493230 9493270 chr2L 9493338 9493378 8 108 1.5 3.5 2.5 2.3 148 chr2L 9493230 intron Gdi - chr2L 9493304 intron Gdi - chr2L 9493378 intron Gdi - chr2L_8_9490001 chr2L_9490001 D20-c5 153 chr2L 9619484 9619505 chr2L 9619846 9619867 4 361 1.5 1.0 1.2 1.8 383 chr2L 9619484 intron GlcAT-S + chr2L 9619676 intron GlcAT-S + chr2L 9619867 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 D20-c5 154 chr2L 9664884 9664928 chr2L 9665004 9665042 6 119 3.5 1.0 2.2 1.9 158 chr2L 9664884 intergenic not near genes chr2L 9664963 intergenic not near genes chr2L 9665042 intergenic not near genes chr2L_6_9660001 chr2L_9660001 D20-c5 155 chr2L 9767875 9767935 chr2L 9767979 9768035 9 102 1.5 3.0 2.2 2.8 160 chr2L 9767875 intron,exon ppk18 -,CG4017 + chr2L 9767955 intron,exon ppk18 -,CG4017 + chr2L 9768035 intron,exon ppk18 -,CG4017 + chr2L_9_9765001 chr2L_9765001 D20-c5 156 chr2L 9973702 9973754 chr2L 9980846 9980898 HMS-Beagle 14 7143 5.5 0.5 3.0 3.5 7196 chr2L 9973702 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980898 intergenic not near genes chr2L_14_9975001 chr2L_9975001 D20-c5 157 chr2L 9986332 9986370 chr2L 9986451 9986473 8 117 1.0 3.0 2.0 2.7 141 chr2L 9986332 intron bib + chr2L 9986402 intron bib + chr2L 9986473 intron bib + chr2L_8_9985001 chr2L_9985001 D20-c5 158 chr2L 10039084 10039112 chr2L 10039329 10039358 5 246 9.0 10.5 9.8 0.5 274 chr2L 10039084 intergenic obst-B + chr2L 10039221 intergenic obst-B + chr2L 10039358 intergenic obst-B + chr2L_5_10035001 chr2L_10035001 D20-c5 159 chr2L 10051699 10051753 chr2L 10051809 10051859 11 107 1.5 2.5 2.0 3.7 160 chr2L 10051699 5` UTR CR44874 + chr2L 10051779 5` UTR CR44874 + chr2L 10051859 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 D20-c5 160 chr2L 10153181 10153237 chr2L 10153282 10153326 11 101 4.0 4.5 4.2 2.1 145 chr2L 10153181 intron,exon CG44153 -,CG4839 + chr2L 10153254 intron,intron CG44153 -,CG4839 + chr2L 10153326 intron,exon CG44153 -,CG4839 + chr2L_11_10150001 chr2L_10150001 D20-c5 161 chr2L 10176024 10176024 chr2L 16071771 16071771 8 5895747 11.0 17.0 14.0 0.5 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_8_13120001 chr2L_13120001 D20-c5 162 chr2L 10180570 10180584 chr2L 10180676 10180694 4 110 3.5 0.0 1.8 1.4 124 chr2L 10180570 intergenic CG44153 - chr2L 10180632 intergenic CG44153 - chr2L 10180694 intergenic CG44153 - chr2L_4_10180001 chr2L_10180001 D20-c5 163 chr2L 10395456 10395507 chr2L 10395559 10395610 4 104 0.0 0.0 0.0 4.0 154 chr2L 10395456 intron Mdh1 - chr2L 10395533 intron Mdh1 - chr2L 10395610 intron Mdh1 - chr2L_4_10395001 chr2L_10395001 D20-c5 164 chr2L 10474360 10474403 chr2L 10474466 10474490 4 101 2.0 0.5 1.2 1.8 130 chr2L 10474360 intergenic RluA-1 - chr2L 10474425 intergenic RluA-1 - chr2L 10474490 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 D20-c5 165 chr2L 10495284 10495305 chr2L 10495386 10495407 6 99 2.5 0.0 1.2 2.7 123 chr2L 10495284 intron Myo31DF - chr2L 10495346 intron Myo31DF - chr2L 10495407 intron Myo31DF - chr2L_6_10495001 chr2L_10495001 D20-c5 166 chr2L 10592831 10592867 chr2L 10600504 10600554 opus 4 7684 0.5 0.5 0.5 2.7 7723 chr2L 10592831 intron Trim9 + chr2L 10596692 intron Trim9 + chr2L 10600554 intron Trim9 + chr2L_4_10595001 chr2L_10595001 D20-c5 167 chr2L 10640618 10640661 chr2L 10640730 10640775 8 113 3.0 1.5 2.2 2.5 157 chr2L 10640618 exon CG31872 + chr2L 10640696 exon CG31872 + chr2L 10640775 exon CG31872 + chr2L_8_10640001 chr2L_10640001 D20-c5 168 chr2L 10673716 10673748 chr2L 10673823 10673855 4 103 2.5 1.0 1.8 1.4 139 chr2L 10673716 intergenic not near genes chr2L 10673786 intergenic not near genes chr2L 10673855 intergenic not near genes chr2L_4_10670001 chr2L_10670001 D20-c5 169 chr2L 10688532 10688572 chr2L 10688616 10688673 4 96 0.0 0.5 0.2 3.3 141 chr2L 10688532 intergenic CG7294 - chr2L 10688602 intergenic CG7294 - chr2L 10688673 intergenic CG7294 - chr2L_4_10685001 chr2L_10685001 D20-c5 170 chr2L 10701686 10701742 chr2L 10701791 10701846 5 105 0.0 0.0 0.0 5.0 160 chr2L 10701686 intergenic Lip1 -,Lip2 - chr2L 10701766 intergenic Lip2 -,Lip1 - chr2L 10701846 intergenic Lip2 -,Lip1 - chr2L_5_10700001 chr2L_10700001 D20-c5 171 chr2L 10852148 10852179 chr2L 10852262 10852293 4 114 1.0 1.5 1.2 1.8 145 chr2L 10852148 intron CG43129 + chr2L 10852220 intron CG43129 + chr2L 10852293 intron CG43129 + chr2L_4_10850001 chr2L_10850001 D20-c5 172 chr2L 10862846 10862864 chr2L 10864485 10864503 Rt1c 5 1639 2.5 7.5 5.0 0.8 1657 chr2L 10862846 3` UTR CR43807 - chr2L 10863674 intron CR43807 - chr2L 10864503 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 D20-c5 173 chr2L 10914775 10914812 chr2L 10914891 10914924 6 115 2.0 1.5 1.8 2.1 149 chr2L 10914775 intergenic not near genes chr2L 10914850 intergenic not near genes chr2L 10914924 intergenic not near genes chr2L_6_10910001 chr2L_10910001 D20-c5 174 chr2L 10945046 10945084 chr2L 10945330 10945368 6 284 2.5 0.5 1.5 2.4 322 chr2L 10945046 intron dpr2 - chr2L 10945207 intron dpr2 - chr2L 10945368 intron dpr2 - chr2L_6_10945001 chr2L_10945001 D20-c5 175 chr2L 10946930 10946972 chr2L 10956166 10956212 roo 12 9236 5.5 2.5 4.0 2.4 9282 chr2L 10946930 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956212 intron dpr2 - chr2L_12_10950001 chr2L_10950001 D20-c5 176 chr2L 11055023 11055068 chr2L 11055133 11055178 4 110 0.0 0.0 0.0 4.0 155 chr2L 11055023 intron Samuel - chr2L 11055100 intron Samuel - chr2L 11055178 intron Samuel - chr2L_4_11055001 chr2L_11055001 D20-c5 177 chr2L 11174612 11174656 chr2L 11174717 11174758 4 101 2.5 3.0 2.8 1.1 146 chr2L 11174612 intron Ca-beta - chr2L 11174685 intron Ca-beta - chr2L 11174758 intron Ca-beta - chr2L_4_11170001 chr2L_11170001 D20-c5 178 chr2L 11224042 11224077 chr2L 11224178 11224212 4 136 1.5 1.5 1.5 1.6 170 chr2L 11224042 intron ab + chr2L 11224127 intron ab + chr2L 11224212 intron ab + chr2L_4_11220001 chr2L_11220001 D20-c5 179 chr2L 11228186 11228206 chr2L 11228280 11228308 5 97 5.5 5.5 5.5 0.8 122 chr2L 11228186 intron ab + chr2L 11228247 intron ab + chr2L 11228308 intron ab + chr2L_5_11225001 chr2L_11225001 D20-c5 180 chr2L 11248551 11248584 chr2L 11248659 11248684 4 105 6.5 3.5 5.0 0.7 133 chr2L 11248551 intron ab + chr2L 11248618 intron ab + chr2L 11248684 intron ab + chr2L_4_11245001 chr2L_11245001 D20-c5 181 chr2L 11295992 11296008 chr2L 11296208 11296223 5 216 3.5 0.0 1.8 1.8 231 chr2L 11295992 intergenic not near genes chr2L 11296108 intergenic not near genes chr2L 11296223 intergenic not near genes chr2L_5_11295001 chr2L_11295001 D20-c5 182 chr2L 11450114 11450156 chr2L 11450224 11450261 5 108 0.0 1.0 0.5 3.3 147 chr2L 11450114 intergenic not near genes chr2L 11450188 intergenic not near genes chr2L 11450261 intergenic not near genes chr2L_5_11450001 chr2L_11450001 D20-c5 183 chr2L 11476243 11476289 chr2L 11476346 11476394 5 104 0.0 5.5 2.8 1.3 151 chr2L 11476243 intergenic not near genes chr2L 11476318 intergenic not near genes chr2L 11476394 intergenic not near genes chr2L_5_11475001 chr2L_11475001 D20-c5 184 chr2L 11491120 11491160 chr2L 11491226 11491265 7 102 1.0 3.0 2.0 2.3 145 chr2L 11491120 intergenic not near genes chr2L 11491192 intergenic not near genes chr2L 11491265 intergenic not near genes chr2L_7_11490001 chr2L_11490001 D20-c5 185 chr2L 11563617 11563654 chr2L 11568846 11568883 copia 4 5229 2.0 3.5 2.8 1.1 5266 chr2L 11563617 intergenic not near genes chr2L 11566250 intergenic not near genes chr2L 11568883 intergenic not near genes chr2L_4_11565001 chr2L_11565001 D20-c5 186 chr2L 11657969 11658004 chr2L 11658078 11658107 5 107 3.0 2.5 2.8 1.3 138 chr2L 11657969 3` UTR CG43167 + chr2L 11658038 intergenic CG43167 + chr2L 11658107 intergenic CG43167 + chr2L_5_11655001 chr2L_11655001 D20-c5 187 chr2L 11672140 11672157 chr2L 11672268 11672289 4 131 1.5 2.5 2.0 1.3 149 chr2L 11672140 intergenic not near genes chr2L 11672214 intergenic not near genes chr2L 11672289 intergenic not near genes chr2L_4_11670001 chr2L_11670001 D20-c5 188 chr2L 11750301 11750332 chr2L 11750612 11750643 10 311 3.0 1.5 2.2 3.1 342 chr2L 11750301 intergenic not near genes chr2L 11750472 intergenic not near genes chr2L 11750643 intergenic not near genes chr2L_10_11750001 chr2L_11750001 D20-c5 189 chr2L 11844168 11844216 chr2L 11844275 11844323 4 104 1.0 2.0 1.5 1.6 155 chr2L 11844168 intron Pde1c - chr2L 11844246 intron Pde1c - chr2L 11844323 intron Pde1c - chr2L_4_11840001 chr2L_11840001 D20-c5 190 chr2L 11892522 11892803 chr2L 11892634 11892904 15 114 5.0 3.0 4.0 3.0 382 chr2L 11892522 intron Pde1c - chr2L 11892713 intron Pde1c - chr2L 11892904 intron Pde1c - chr2L_15_11890001 chr2L_11890001 D20-c5 191 chr2L 11913269 11913316 chr2L 11913395 11913439 6 125 3.0 1.5 2.2 1.9 170 chr2L 11913269 intron Pde1c - chr2L 11913354 intron Pde1c - chr2L 11913439 intron Pde1c - chr2L_6_11910001 chr2L_11910001 D20-c5 192 chr2L 11976072 11976115 chr2L 11976174 11976217 4 102 1.0 0.5 0.8 2.2 145 chr2L 11976072 intergenic not near genes chr2L 11976144 intergenic not near genes chr2L 11976217 intergenic not near genes chr2L_4_11975001 chr2L_11975001 D20-c5 193 chr2L 12012555 12012577 chr2L 12012660 12012683 6 108 24.5 17.5 21.0 0.3 128 chr2L 12012555 intergenic not near genes chr2L 12012619 intergenic not near genes chr2L 12012683 intergenic not near genes chr2L_6_12010001 chr2L_12010001 D20-c5 194 chr2L 12154000 12154048 chr2L 12154500 12154548 9 498 2.5 1.0 1.8 3.2 548 chr2L 12154000 intron CG31760 + chr2L 12154274 intron CG31760 + chr2L 12154548 intron CG31760 + chr2L_9_12150001 chr2L_12150001 D20-c5 195 chr2L 12234012 12234063 chr2L 12234132 12234183 5 120 1.0 2.0 1.5 2.0 171 chr2L 12234012 intron aret + chr2L 12234098 intron aret + chr2L 12234183 intron aret + chr2L_5_12230001 chr2L_12230001 D20-c5 196 chr2L 12322749 12322797 chr2L 12322849 12322898 4 100 2.0 0.5 1.2 1.8 149 chr2L 12322749 intergenic not near genes chr2L 12322824 intergenic not near genes chr2L 12322898 intergenic not near genes chr2L_4_12320001 chr2L_12320001 D20-c5 197 chr2L 12361010 12361031 chr2L 12361185 12361209 4 177 1.5 0.0 0.8 2.2 199 chr2L 12361010 intron bru-2 + chr2L 12361110 intron bru-2 + chr2L 12361209 intron bru-2 + chr2L_4_12360001 chr2L_12360001 D20-c5 198 chr2L 12418406 12418431 chr2L 12418511 12418538 4 106 3.0 2.5 2.8 1.1 132 chr2L 12418406 intron vir-1 - chr2L 12418472 intron vir-1 - chr2L 12418538 intron vir-1 - chr2L_4_12415001 chr2L_12415001 D20-c5 199 chr2L 12424368 12424380 chr2L 12424468 12424481 4 101 0.0 1.5 0.8 2.2 113 chr2L 12424368 intergenic not near genes chr2L 12424424 intergenic CG6405 + chr2L 12424481 intergenic CG6405 + chr2L_4_12420001 chr2L_12420001 D20-c5 200 chr2L 12426113 12426162 chr2L 12426221 12426270 9 107 3.0 5.0 4.0 1.8 157 chr2L 12426113 exon CG6405 + chr2L 12426192 exon CG6405 + chr2L 12426270 exon CG6405 + chr2L_9_12425001 chr2L_12425001 D20-c5 201 chr2L 12487867 12487904 chr2L 12487973 12488009 7 105 6.0 2.5 4.2 1.3 142 chr2L 12487867 intron bun - chr2L 12487938 intron bun - chr2L 12488009 intron bun - chr2L_7_12485001 chr2L_12485001 D20-c5 202 chr2L 12529214 12529258 chr2L 12529390 12529434 6 176 2.0 2.5 2.2 1.9 220 chr2L 12529214 intron bun - chr2L 12529324 intron bun - chr2L 12529434 intron bun - chr2L_6_12525001 chr2L_12525001 D20-c5 203 chr2L 12558297 12558353 chr2L 12565450 12565506 HMS-Beagle 5 7153 0.0 0.5 0.2 4.2 7209 chr2L 12558297 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565506 intergenic not near genes chr2L_5_12560001 chr2L_12560001 D20-c5 204 chr2L 12653776 12653812 chr2L 12653918 12653954 9 142 1.0 4.0 2.5 2.6 178 chr2L 12653776 intergenic not near genes chr2L 12653865 intergenic not near genes chr2L 12653954 intergenic not near genes chr2L_9_12650001 chr2L_12650001 D20-c5 205 chr2L 12728906 12728939 chr2L 12729170 12729193 pogo 6 262 4.5 2.5 3.5 1.3 287 chr2L 12728906 intron MRP + chr2L 12729050 intron MRP + chr2L 12729193 exon MRP + chr2L_6_12725001 chr2L_12725001 D20-c5 206 chr2L 12731034 12731075 chr2L 12735825 12735867 F-element 7 4790 3.5 5.5 4.5 1.3 4833 chr2L 12731034 intron MRP + chr2L 12733450 intron MRP + chr2L 12735867 intron MRP + chr2L_7_12730001 chr2L_12730001 D20-c5 207 chr2L 12739155 12739195 chr2L 12743961 12743999 Doc 5 4805 5.0 2.5 3.8 1.0 4844 chr2L 12739155 exon MRP + chr2L 12741577 intron MRP + chr2L 12743999 exon MRP + chr2L_5_12740001 chr2L_12740001 D20-c5 208 chr2L 12751289 12751322 chr2L 12751397 12751430 6 104 1.0 1.5 1.2 2.7 141 chr2L 12751289 intergenic not near genes chr2L 12751360 intergenic not near genes chr2L 12751430 intergenic not near genes chr2L_6_12750001 chr2L_12750001 D20-c5 209 chr2L 12781785 12781815 chr2L 12789259 12789290 Quasimodo 5 7474 4.5 3.5 4.0 1.0 7505 chr2L 12781785 intergenic not near genes chr2L 12785538 intergenic not near genes chr2L 12789290 intergenic not near genes chr2L_5_12785001 chr2L_12785001 D20-c5 210 chr2L 12791607 12791621 chr2L 12795307 12795321 F-element 4 3698 2.0 1.0 1.5 1.6 3714 chr2L 12791607 intergenic not near genes chr2L 12793464 intergenic not near genes chr2L 12795321 intergenic not near genes chr2L_4_12790001 chr2L_12790001 D20-c5 211 chr2L 12811461 12811467 chr2L 12811569 12811591 4 118 0.0 1.0 0.5 2.7 130 chr2L 12811461 intergenic not near genes chr2L 12811526 intergenic not near genes chr2L 12811591 intergenic not near genes chr2L_4_12810001 chr2L_12810001 D20-c5 212 chr2L 12811970 12812013 chr2L 12812102 12812146 11 132 2.5 2.0 2.2 3.4 176 chr2L 12811970 intergenic not near genes chr2L 12812058 intergenic not near genes chr2L 12812146 intergenic not near genes chr2L_11_12810001 chr2L_12810001 D20-c5 213 chr2L 12846860 12846908 chr2L 12846984 12847032 5 122 1.0 3.5 2.2 1.6 172 chr2L 12846860 intergenic not near genes chr2L 12846946 intergenic not near genes chr2L 12847032 intergenic not near genes chr2L_5_12845001 chr2L_12845001 D20-c5 214 chr2L 12861677 12861711 chr2L 12863169 12863203 hobo 6 1492 4.5 1.0 2.8 1.6 1526 chr2L 12861677 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863203 intergenic not near genes chr2L_6_12860001 chr2L_12860001 D20-c5 215 chr2L 12889016 12889061 chr2L 12889114 12889169 13 104 2.0 2.0 2.0 4.3 153 chr2L 12889016 intergenic not near genes chr2L 12889092 intergenic not near genes chr2L 12889169 intergenic not near genes chr2L_13_12885001 chr2L_12885001 D20-c5 216 chr2L 12894007 12894049 chr2L 12895499 12895541 hobo 10 1492 2.5 2.0 2.2 3.1 1534 chr2L 12894007 intergenic not near genes chr2L 12894774 intergenic not near genes chr2L 12895541 intergenic not near genes chr2L_10_12890001 chr2L_12890001 D20-c5 217 chr2L 12933827 12933878 chr2L 12941319 12941369 blood 14 7492 2.5 1.5 2.0 4.7 7542 chr2L 12933827 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941369 intergenic not near genes chr2L_14_12935001 chr2L_12935001 D20-c5 218 chr2L 12949229 12949276 chr2L 12949347 12949393 4 116 2.5 1.5 2.0 1.3 164 chr2L 12949229 intergenic not near genes chr2L 12949311 intergenic not near genes chr2L 12949393 intergenic not near genes chr2L_4_12945001 chr2L_12945001 D20-c5 219 chr2L 12955857 12955892 chr2L 12956082 12956117 7 225 2.5 6.0 4.2 1.3 260 chr2L 12955857 intergenic not near genes chr2L 12955987 intergenic not near genes chr2L 12956117 intergenic not near genes chr2L_7_12955001 chr2L_12955001 D20-c5 220 chr2L 13069267 13069303 chr2L 13069412 13069448 4 145 6.5 4.5 5.5 0.6 181 chr2L 13069267 intergenic not near genes chr2L 13069358 intergenic not near genes chr2L 13069448 intergenic not near genes chr2L_4_13065001 chr2L_13065001 D20-c5 221 chr2L 13109436 13109473 chr2L 13109589 13109626 6 153 3.0 5.0 4.0 1.2 190 chr2L 13109436 3` UTR CG5142 + chr2L 13109531 intergenic CG5142 + chr2L 13109626 intergenic CG5142 + chr2L_6_13105001 chr2L_13105001 D20-c5 222 chr2L 13266361 13266408 chr2L 13266474 13266489 7 104 2.5 5.5 4.0 1.4 128 chr2L 13266361 intron CG44085 + chr2L 13266425 intron CG44085 + chr2L 13266489 intron CG44085 + chr2L_7_13265001 chr2L_13265001 D20-c5 223 chr2L 13351804 13351843 chr2L 13351915 13351953 4 110 2.5 5.0 3.8 0.8 149 chr2L 13351804 exon CG9395 - chr2L 13351878 intron CG9395 - chr2L 13351953 exon CG9395 - chr2L_4_13350001 chr2L_13350001 D20-c5 224 chr2L 13358233 13358262 chr2L 13358341 13358370 4 106 7.0 9.5 8.2 0.4 137 chr2L 13358233 intergenic not near genes chr2L 13358302 intergenic not near genes chr2L 13358370 intergenic not near genes chr2L_4_13355001 chr2L_13355001 D20-c5 225 chr2L 13374310 13374348 chr2L 13374420 13374459 5 111 9.0 13.0 11.0 0.4 149 chr2L 13374310 5` UTR CG6565 + chr2L 13374384 5` UTR CG6565 + chr2L 13374459 5` UTR CG6565 + chr2L_5_13370001 chr2L_13370001 D20-c5 226 chr2L 13405627 13405673 chr2L 13410446 13410495 Doc 6 4821 4.0 2.0 3.0 1.5 4868 chr2L 13405627 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_6_13405001 chr2L_13405001 D20-c5 227 chr2L 13449443 13449490 chr2L 13456904 13456951 Quasimodo 4 7461 2.5 2.5 2.5 1.1 7508 chr2L 13449443 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453197 intron CG42784 + chr2L 13456951 intron CG42784 + chr2L_4_13450001 chr2L_13450001 D20-c5 228 chr2L 13481433 13481461 chr2L 13482065 13482093 jockey 11 631 2.5 2.5 2.5 3.1 660 chr2L 13481433 intron CG42784 + chr2L 13481763 intron CG42784 + chr2L 13482093 intron CG42784 + chr2L_11_13480001 chr2L_13480001 D20-c5 229 chr2L 13690715 13690746 chr2L 13693121 13693150 4 2406 5.5 12.0 8.8 0.4 2435 chr2L 13690715 intron CG31814 - chr2L 13691932 intron CG31814 - chr2L 13693150 intron CG31814 - chr2L_4_13690001 chr2L_13690001 D20-c5 230 chr2L 13761788 13761825 chr2L 13762924 13762961 Doc 6 1135 3.0 1.5 2.2 1.9 1173 chr2L 13761788 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762961 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 D20-c5 231 chr2L 13974770 13974795 chr2L 13975195 13975222 8 427 10.5 12.0 11.2 0.7 452 chr2L 13974770 exon NimC1 - chr2L 13974996 exon NimC1 - chr2L 13975222 exon NimC1 - chr2L_8_13970001 chr2L_13970001 D20-c5 232 chr2L 13981498 13981546 chr2L 13981614 13981662 8 115 6.5 4.0 5.2 1.3 164 chr2L 13981498 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981662 intron NimC2 + chr2L_8_13980001 chr2L_13980001 D20-c5 233 chr2L 14005156 14005173 chr2L 14005259 14005260 4 94 3.5 1.0 2.2 1.2 104 chr2L 14005156 intergenic not near genes chr2L 14005208 intergenic not near genes chr2L 14005260 intergenic not near genes chr2L_4_14005001 chr2L_14005001 D20-c5 234 chr2L 14125959 14125985 chr2L 14126067 14126093 4 108 9.0 10.5 9.8 0.4 134 chr2L 14125959 intergenic not near genes chr2L 14126026 intergenic not near genes chr2L 14126093 intergenic not near genes chr2L_4_14125001 chr2L_14125001 D20-c5 235 chr2L 14222304 14222330 chr2L 14222415 14222442 4 111 2.0 4.0 3.0 1.0 138 chr2L 14222304 intron Dyrk2 - chr2L 14222373 intron Dyrk2 - chr2L 14222442 intron Dyrk2 - chr2L_4_14220001 chr2L_14220001 D20-c5 236 chr2L 14367804 14367842 chr2L 14367956 14367993 6 151 1.5 2.5 2.0 2.0 189 chr2L 14367804 intergenic not near genes chr2L 14367898 intergenic not near genes chr2L 14367993 intergenic not near genes chr2L_6_14365001 chr2L_14365001 D20-c5 237 chr2L 14410012 14410052 chr2L 14410132 14410172 7 119 2.0 1.5 1.8 2.5 160 chr2L 14410012 5` UTR CR44733 + chr2L 14410092 intergenic CR44733 + chr2L 14410172 intergenic CR44733 + chr2L_7_14410001 chr2L_14410001 D20-c5 238 chr2L 14564190 14564225 chr2L 14564291 14564324 10 100 3.0 4.0 3.5 2.2 134 chr2L 14564190 intergenic CG3473 - chr2L 14564257 intergenic not near genes chr2L 14564324 intergenic not near genes chr2L_10_14560001 chr2L_14560001 D20-c5 239 chr2L 14642568 14642598 chr2L 14651746 14651786 roo 5 9184 3.0 3.5 3.2 1.2 9218 chr2L 14642568 intron osp - chr2L 14647177 intron osp - chr2L 14651786 intron osp - chr2L_5_14645001 chr2L_14645001 D20-c5 240 chr2L 14694232 14694267 chr2L 14694381 14694416 7 148 1.0 2.0 1.5 2.8 184 chr2L 14694232 intergenic not near genes chr2L 14694324 intergenic not near genes chr2L 14694416 intergenic not near genes chr2L_7_14690001 chr2L_14690001 D20-c5 241 chr2L 14778788 14778833 chr2L 14779101 14779145 14 311 4.5 3.0 3.8 2.9 357 chr2L 14778788 intergenic not near genes chr2L 14778966 intergenic not near genes chr2L 14779145 intergenic not near genes chr2L_14_14775001 chr2L_14775001 D20-c5 242 chr2L 14803854 14803904 chr2L 14809082 14809132 copia 8 5227 2.0 0.5 1.2 3.6 5278 chr2L 14803854 intergenic not near genes chr2L 14806493 intergenic not near genes chr2L 14809132 intergenic not near genes chr2L_8_14805001 chr2L_14805001 D20-c5 243 chr2L 14840986 14841006 chr2L 14841098 14841118 4 112 3.0 1.5 2.2 1.2 132 chr2L 14840986 3` UTR CR43805 - chr2L 14841052 3` UTR CR43805 - chr2L 14841118 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 D20-c5 244 chr2L 14854571 14854612 chr2L 14854681 14854722 9 110 5.5 1.5 3.5 2.0 151 chr2L 14854571 intergenic not near genes chr2L 14854646 intergenic not near genes chr2L 14854722 intergenic not near genes chr2L_9_14850001 chr2L_14850001 D20-c5 245 chr2L 14889934 14889957 chr2L 14890384 14890407 jockey 7 450 2.5 3.0 2.8 1.8 473 chr2L 14889934 intergenic not near genes chr2L 14890170 intergenic not near genes chr2L 14890407 intergenic not near genes chr2L_7_14890001 chr2L_14890001 D20-c5 246 chr2L 14984370 14984383 chr2L 14991981 14991994 opus 4 7611 2.5 2.0 2.2 1.2 7624 chr2L 14984370 intron mol - chr2L 14988182 intron mol - chr2L 14991994 intron mol - chr2L_4_14985001 chr2L_14985001 D20-c5 247 chr2L 15000863 15000911 chr2L 15000965 15001015 6 104 12.5 9.0 10.8 0.5 152 chr2L 15000863 intergenic not near genes chr2L 15000939 intergenic not near genes chr2L 15001015 intergenic not near genes chr2L_6_15000001 chr2L_15000001 D20-c5 248 chr2L 15077913 15078101 chr2L 15078025 15078214 6 113 1.0 2.0 1.5 2.4 301 chr2L 15077913 intron CG15270 + chr2L 15078064 intron CG15270 + chr2L 15078214 intron CG15270 + chr2L_6_15075001 chr2L_15075001 D20-c5 249 chr2L 15082650 15082691 chr2L 15082769 15082809 4 118 1.0 1.5 1.2 1.8 159 chr2L 15082650 intron CG15270 + chr2L 15082730 intron CG15270 + chr2L 15082809 intron CG15270 + chr2L_4_15080001 chr2L_15080001 D20-c5 250 chr2L 15098518 15098538 chr2L 15098618 15098643 7 104 3.5 2.0 2.8 1.8 125 chr2L 15098518 intergenic not near genes chr2L 15098580 intergenic not near genes chr2L 15098643 intergenic not near genes chr2L_7_15095001 chr2L_15095001 D20-c5 251 chr2L 15122755 15122800 chr2L 15122860 15122905 4 105 1.0 0.5 0.8 2.2 150 chr2L 15122755 intergenic not near genes chr2L 15122830 intergenic not near genes chr2L 15122905 intergenic not near genes chr2L_4_15120001 chr2L_15120001 D20-c5 252 chr2L 15156578 15156622 chr2L 15156685 15156729 4 102 2.5 5.5 4.0 0.8 151 chr2L 15156578 intergenic not near genes chr2L 15156654 intergenic not near genes chr2L 15156729 intergenic not near genes chr2L_4_15155001 chr2L_15155001 D20-c5 253 chr2L 15219669 15219682 chr2L 15219771 15219784 5 102 4.0 4.0 4.0 1.0 115 chr2L 15219669 intergenic not near genes chr2L 15219726 intergenic not near genes chr2L 15219784 intergenic not near genes chr2L_5_15215001 chr2L_15215001 D20-c5 254 chr2L 15226359 15226391 chr2L 15226460 15226492 4 101 0.5 1.0 0.8 2.2 133 chr2L 15226359 intergenic not near genes chr2L 15226426 intergenic not near genes chr2L 15226492 intergenic not near genes chr2L_4_15225001 chr2L_15225001 D20-c5 255 chr2L 15233881 15233949 chr2L 15234024 15234068 5 129 0.0 2.0 1.0 2.5 187 chr2L 15233881 intron ZnT35C - chr2L 15233974 intron ZnT35C - chr2L 15234068 intron ZnT35C - chr2L_5_15230001 chr2L_15230001 D20-c5 256 chr2L 15499889 15499939 chr2L 15500001 15500051 4 112 2.0 0.0 1.0 2.0 162 chr2L 15499889 intron lace + chr2L 15499970 intron lace + chr2L 15500051 intron lace + chr2L_4_15495001 chr2L_15495001 D20-c5 257 chr2L 15510921 15510963 chr2L 15511040 15511082 7 117 0.0 1.0 0.5 4.7 161 chr2L 15510921 intergenic not near genes chr2L 15511002 intergenic not near genes chr2L 15511082 intergenic not near genes chr2L_7_15510001 chr2L_15510001 D20-c5 258 chr2L 15586386 15586434 chr2L 15593463 15593511 297 7 7076 2.5 1.0 1.8 2.5 7125 chr2L 15586386 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593511 intergenic not near genes chr2L_7_15585001 chr2L_15585001 D20-c5 259 chr2L 15602852 15602873 chr2L 15603307 15603328 4 455 1.5 2.0 1.8 1.4 476 chr2L 15602852 intergenic not near genes chr2L 15603090 intergenic not near genes chr2L 15603328 intergenic not near genes chr2L_4_15600001 chr2L_15600001 D20-c5 260 chr2L 15826874 15826887 chr2L 15829293 15829306 Tabor 5 2418 0.5 1.0 0.8 2.8 2432 chr2L 15826874 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829306 intergenic not near genes chr2L_5_15825001 chr2L_15825001 D20-c5 261 chr2L 15863175 15863224 chr2L 15863427 15863473 4 247 3.0 1.0 2.0 1.3 298 chr2L 15863175 intergenic CR42791 + chr2L 15863324 5` UTR CR42791 + chr2L 15863473 5` UTR CR42791 + chr2L_4_15860001 chr2L_15860001 D20-c5 262 chr2L 15915640 15915676 chr2L 15915743 15915779 5 100 2.5 2.5 2.5 1.4 139 chr2L 15915640 intron beat-Ib - chr2L 15915710 intron beat-Ib - chr2L 15915779 intron beat-Ib - chr2L_5_15915001 chr2L_15915001 D20-c5 263 chr2L 15996561 15996601 chr2L 15996708 15996748 4 147 2.5 1.0 1.8 1.4 187 chr2L 15996561 intergenic not near genes chr2L 15996654 intergenic not near genes chr2L 15996748 intergenic not near genes chr2L_4_15995001 chr2L_15995001 D20-c5 264 chr2L 16001455 16001481 chr2L 16001568 16001594 4 113 0.0 1.5 0.8 2.2 139 chr2L 16001455 intron beat-Ic + chr2L 16001524 intron beat-Ic + chr2L 16001594 intron beat-Ic + chr2L_4_16000001 chr2L_16000001 D20-c5 265 chr2L 8578452 8578452 chr2L 16071771 16071771 4 7493319 16.5 17.0 16.8 0.2 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_12325001 chr2L_12325001 D20-c5 266 chr2L 10176023 10176024 chr2L 16071771 16071771 4 5895748 11.0 17.0 14.0 0.3 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 D20-c5 267 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 55 145889 16.5 14.0 15.2 3.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_55_16140001 chr2L_16140001 D20-c5 268 chr2L 16141159 16141184 chr2L 16146390 16146414 copia 4 5231 1.0 2.0 1.5 1.6 5255 chr2L 16141159 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146414 intergenic not near genes chr2L_4_16140001 chr2L_16140001 D20-c5 269 chr2L 16153710 16153747 chr2L 16160789 16160826 297 8 7079 5.0 4.5 4.8 1.4 7116 chr2L 16153710 intergenic not near genes chr2L 16157268 intergenic not near genes chr2L 16160826 intergenic not near genes chr2L_8_16155001 chr2L_16155001 D20-c5 270 chr2L 16171758 16171796 chr2L 16171877 16171915 7 119 0.5 2.0 1.2 3.2 157 chr2L 16171758 intron Ca-alpha1D + chr2L 16171836 intron Ca-alpha1D + chr2L 16171915 intron Ca-alpha1D + chr2L_7_16170001 chr2L_16170001 D20-c5 271 chr2L 9084336 9084340 chr2L 16217660 16217660 25 7133321 13.5 14.0 13.8 1.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_25_12650001 chr2L_12650001 D20-c5 272 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 26 145889 16.5 14.0 15.2 1.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_26_16140001 chr2L_16140001 D20-c5 273 chr2L 16254872 16254883 chr2L 16255156 16255167 4 284 4.5 1.0 2.8 1.1 295 chr2L 16254872 intron PRL-1 - chr2L 16255020 intron PRL-1 - chr2L 16255167 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 D20-c5 274 chr2L 16280245 16280286 chr2L 16281427 16281474 1360 8 1191 2.5 3.0 2.8 2.1 1229 chr2L 16280245 intron crp - chr2L 16280860 intron crp - chr2L 16281474 intron crp - chr2L_8_16280001 chr2L_16280001 D20-c5 275 chr2L 16434114 16434124 chr2L 16434217 16434231 5 106 2.5 2.0 2.2 1.6 117 chr2L 16434114 intron CG5888 - chr2L 16434172 intron CG5888 - chr2L 16434231 intron CG5888 - chr2L_5_16430001 chr2L_16430001 D20-c5 276 chr2L 16480594 16480636 chr2L 16480707 16480749 6 113 2.0 3.0 2.5 1.7 155 chr2L 16480594 intron dac - chr2L 16480672 intron dac - chr2L 16480749 intron dac - chr2L_6_16480001 chr2L_16480001 D20-c5 277 chr2L 16573225 16573259 chr2L 16573332 16573367 12 108 7.5 5.5 6.5 1.6 142 chr2L 16573225 intron CG42389 + chr2L 16573296 intron CG42389 + chr2L 16573367 intron CG42389 + chr2L_12_16570001 chr2L_16570001 D20-c5 278 chr2L 16693896 16693933 chr2L 16694000 16694036 9 104 1.0 2.5 1.8 3.2 140 chr2L 16693896 intron grp + chr2L 16693966 intron grp + chr2L 16694036 intron grp + chr2L_9_16690001 chr2L_16690001 D20-c5 279 chr2L 16710700 16710743 chr2L 16710809 16710850 7 107 0.5 1.5 1.0 3.5 150 chr2L 16710700 intron CG31808 - chr2L 16710775 intron CG31808 - chr2L 16710850 intron CG31808 - chr2L_7_16710001 chr2L_16710001 D20-c5 280 chr2L 16867707 16867731 chr2L 16867879 16867905 5 174 2.0 3.0 2.5 1.4 198 chr2L 16867707 intergenic not near genes chr2L 16867806 intergenic not near genes chr2L 16867905 intergenic not near genes chr2L_5_16865001 chr2L_16865001 D20-c5 281 chr2L 16952668 16952710 chr2L 16952792 16952844 5 132 3.0 2.5 2.8 1.3 176 chr2L 16952668 intergenic not near genes chr2L 16952756 intergenic not near genes chr2L 16952844 intergenic not near genes chr2L_5_16950001 chr2L_16950001 D20-c5 282 chr2L 17005389 17005434 chr2L 17005510 17005550 7 120 2.5 2.0 2.2 2.2 161 chr2L 17005389 intergenic not near genes chr2L 17005470 intergenic not near genes chr2L 17005550 intergenic not near genes chr2L_7_17005001 chr2L_17005001 D20-c5 283 chr2L 17050009 17050050 chr2L 17050119 17050144 8 109 3.0 4.0 3.5 1.8 135 chr2L 17050009 intergenic not near genes chr2L 17050076 intergenic not near genes chr2L 17050144 intergenic not near genes chr2L_8_17050001 chr2L_17050001 D20-c5 284 chr2L 17062745 17062787 chr2L 17062852 17062894 5 107 1.0 3.5 2.2 1.6 149 chr2L 17062745 intergenic not near genes chr2L 17062820 intergenic not near genes chr2L 17062894 intergenic not near genes chr2L_5_17060001 chr2L_17060001 D20-c5 285 chr2L 17076514 17076552 chr2L 17076625 17076663 4 111 7.0 8.5 7.8 0.5 149 chr2L 17076514 intergenic not near genes chr2L 17076588 intergenic not near genes chr2L 17076663 intergenic not near genes chr2L_4_17075001 chr2L_17075001 D20-c5 286 chr2L 17102981 17102993 chr2L 17103094 17103102 4 112 3.0 5.0 4.0 0.8 121 chr2L 17102981 intergenic not near genes chr2L 17103042 intergenic not near genes chr2L 17103102 intergenic not near genes chr2L_4_17100001 chr2L_17100001 D20-c5 287 chr2L 17158729 17158749 chr2L 17158844 17158876 4 124 4.0 3.0 3.5 0.9 147 chr2L 17158729 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158802 intron,intron CG34106 +,beat-IIIa + chr2L 17158876 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 D20-c5 288 chr2L 17167546 17167579 chr2L 17167811 17167844 pogo 4 265 2.5 1.0 1.8 1.4 298 chr2L 17167546 intron,intron CG34106 +,beat-IIIa + chr2L 17167695 intron,intron CG34106 +,beat-IIIa + chr2L 17167844 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 D20-c5 289 chr2L 17184252 17184293 chr2L 17184428 17184468 6 173 8.0 3.0 5.5 0.9 216 chr2L 17184252 intergenic not near genes chr2L 17184360 intergenic not near genes chr2L 17184468 intergenic not near genes chr2L_6_17180001 chr2L_17180001 D20-c5 290 chr2L 17239021 17239219 chr2L 17239130 17239327 8 109 11.0 6.5 8.8 0.8 306 chr2L 17239021 intron beat-IIIc - chr2L 17239174 intron beat-IIIc - chr2L 17239327 intron beat-IIIc - chr2L_8_17235001 chr2L_17235001 D20-c5 291 chr2L 17273177 17273225 chr2L 17277982 17277989 F-element 5 4798 0.0 5.5 2.8 1.3 4812 chr2L 17273177 intergenic not near genes chr2L 17275583 intergenic not near genes chr2L 17277989 intergenic not near genes chr2L_5_17275001 chr2L_17275001 D20-c5 292 chr2L 17328740 17328786 chr2L 17329050 17329101 6 313 4.0 3.5 3.8 1.2 361 chr2L 17328740 intergenic not near genes chr2L 17328920 intergenic not near genes chr2L 17329101 intergenic not near genes chr2L_6_17325001 chr2L_17325001 D20-c5 293 chr2L 17337327 17337344 chr2L 17337441 17337457 5 115 6.5 9.0 7.8 0.6 130 chr2L 17337327 intergenic not near genes chr2L 17337392 intergenic not near genes chr2L 17337457 intergenic not near genes chr2L_5_17335001 chr2L_17335001 D20-c5 294 chr2L 17405384 17405393 chr2L 17405498 17405530 4 132 8.0 13.0 10.5 0.3 146 chr2L 17405384 exon CLIP-190 + chr2L 17405457 intron CLIP-190 + chr2L 17405530 exon CLIP-190 + chr2L_4_17405001 chr2L_17405001 D20-c5 295 chr2L 17687507 17687520 chr2L 17692277 17692290 F-element 5 4770 0.5 2.5 1.5 2.0 4783 chr2L 17687507 intron CadN - chr2L 17689898 intron CadN - chr2L 17692290 intron CadN - chr2L_5_17685001 chr2L_17685001 D20-c5 296 chr2L 17718366 17718408 chr2L 17718492 17718538 6 129 4.0 6.5 5.2 1.0 172 chr2L 17718366 intron CadN - chr2L 17718452 intron CadN - chr2L 17718538 intron CadN - chr2L_6_17715001 chr2L_17715001 D20-c5 297 chr2L 17727852 17727872 chr2L 17729344 17729364 hobo 4 1492 2.0 3.5 2.8 1.1 1512 chr2L 17727852 intron CadN - chr2L 17728608 intron CadN - chr2L 17729364 intron CadN - chr2L_4_17725001 chr2L_17725001 D20-c5 298 chr2L 17911937 17911983 chr2L 17914148 17914186 pogo 8 2206 7.0 3.5 5.2 1.3 2249 chr2L 17911937 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914186 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 D20-c5 299 chr2L 17951925 17951953 chr2L 17953411 17953445 hobo 6 1490 3.5 1.0 2.2 1.9 1520 chr2L 17951925 intergenic CR44398 -,CR44397 - chr2L 17952685 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_6_17950001 chr2L_17950001 D20-c5 300 chr2L 17989974 17990017 chr2L 17990075 17990118 7 100 11.5 7.5 9.5 0.7 144 chr2L 17989974 intergenic Prosbeta5R2 + chr2L 17990046 intergenic Prosbeta5R2 + chr2L 17990118 intergenic Prosbeta5R2 + chr2L_7_17990001 chr2L_17990001 D20-c5 301 chr2L 17986758 17986807 chr2L 17991461 17991510 5 4704 11.0 10.5 10.8 0.4 4752 chr2L 17986758 exon CG5681 + chr2L 17989134 intergenic not near genes chr2L 17991510 3` UTR Prosbeta5R2 + chr2L_5_17985001 chr2L_17985001 D20-c5 302 chr2L 17988374 17988399 chr2L 17991947 17991972 6 3573 8.5 8.5 8.5 0.6 3598 chr2L 17988374 3` UTR CG5681 + chr2L 17990173 intergenic Prosbeta5R2 + chr2L 17991972 intergenic Prosbeta5R2 + chr2L_6_17990001 chr2L_17990001 D20-c5 303 chr2L 18047024 18047060 chr2L 18047131 18047167 5 106 9.5 11.0 10.2 0.4 143 chr2L 18047024 intron rdo + chr2L 18047096 intron rdo + chr2L 18047167 intron rdo + chr2L_5_18045001 chr2L_18045001 D20-c5 304 chr2L 18235043 18235073 chr2L 18235200 18235230 5 157 13.5 14.0 13.8 0.3 187 chr2L 18235043 intron CG42750 - chr2L 18235136 intron CG42750 - chr2L 18235230 intron CG42750 - chr2L_5_18235001 chr2L_18235001 D20-c5 305 chr2L 18298932 18298955 chr2L 18299008 18299056 4 86 1.5 4.5 3.0 1.0 124 chr2L 18298932 intergenic not near genes chr2L 18298994 intergenic not near genes chr2L 18299056 intergenic not near genes chr2L_4_18295001 chr2L_18295001 D20-c5 306 chr2L 18370764 18370816 chr2L 18370950 18371002 11 186 2.0 1.5 1.8 3.9 238 chr2L 18370764 intron Fas3 + chr2L 18370883 intron Fas3 + chr2L 18371002 intron Fas3 + chr2L_11_18370001 chr2L_18370001 D20-c5 307 chr2L 18442081 18442128 chr2L 18442235 18442283 6 156 0.0 1.0 0.5 4.0 202 chr2L 18442081 3` UTR RpS26 - chr2L 18442182 3` UTR RpS26 - chr2L 18442283 3` UTR RpS26 - chr2L_6_18440001 chr2L_18440001 D20-c5 308 chr2L 18629362 18629389 chr2L 18629456 18629499 5 107 1.5 2.5 2.0 1.7 137 chr2L 18629362 intron MESR3 + chr2L 18629430 intron MESR3 + chr2L 18629499 intron MESR3 + chr2L_5_18625001 chr2L_18625001 D20-c5 309 chr2L 18666786 18666810 chr2L 18669940 18669964 4 3154 12.5 16.0 14.2 0.3 3178 chr2L 18666786 intergenic CG43338 - chr2L 18668375 exon CG43338 - chr2L 18669964 intron CG43338 - chr2L_4_18665001 chr2L_18665001 D20-c5 310 chr2L 18766432 18766450 chr2L 18766577 18766594 5 145 6.5 0.0 3.2 1.2 162 chr2L 18766432 intron ham - chr2L 18766513 intron ham - chr2L 18766594 intron ham - chr2L_5_18765001 chr2L_18765001 D20-c5 311 chr2L 18816005 18816058 chr2L 18816244 18816297 4 238 0.5 1.0 0.8 2.2 292 chr2L 18816005 intergenic not near genes chr2L 18816151 intergenic not near genes chr2L 18816297 intergenic not near genes chr2L_4_18815001 chr2L_18815001 D20-c5 312 chr2L 18872924 18872980 chr2L 18873034 18873091 18 108 2.5 2.5 2.5 5.1 167 chr2L 18872924 intron tup - chr2L 18873008 intron tup - chr2L 18873091 intron tup - chr2L_18_18870001 chr2L_18870001 D20-c5 313 chr2L 18898381 18898411 chr2L 18898488 18898518 5 106 2.0 0.0 1.0 2.5 137 chr2L 18898381 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898518 intergenic not near genes chr2L_5_18895001 chr2L_18895001 D20-c5 314 chr2L 18904568 18904588 chr2L 18904719 18904739 5 151 2.0 2.0 2.0 1.7 171 chr2L 18904568 intergenic not near genes chr2L 18904654 intergenic not near genes chr2L 18904739 intergenic not near genes chr2L_5_18900001 chr2L_18900001 D20-c5 315 chr2L 18913406 18913460 chr2L 18913517 18913571 17 108 1.5 4.5 3.0 4.2 165 chr2L 18913406 intergenic not near genes chr2L 18913488 intergenic not near genes chr2L 18913571 intergenic not near genes chr2L_17_18910001 chr2L_18910001 D20-c5 316 chr2L 18995999 18996022 chr2L 18996112 18996127 4 111 3.0 5.5 4.2 0.8 128 chr2L 18995999 intergenic CG10650 - chr2L 18996063 intergenic CG10650 - chr2L 18996127 intergenic CG10650 - chr2L_4_18995001 chr2L_18995001 D20-c5 317 chr2L 19016817 19016839 chr2L 19017099 19017124 5 284 11.0 9.0 10.0 0.5 307 chr2L 19016817 intergenic not near genes chr2L 19016970 intergenic not near genes chr2L 19017124 intergenic not near genes chr2L_5_19015001 chr2L_19015001 D20-c5 318 chr2L 19024096 19024097 chr2L 21768291 21768291 21 2744195 16.5 23.5 20.0 1.0 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_21_20395001 chr2L_20395001 D20-c5 319 chr2L 19070262 19070289 chr2L 19070376 19070407 5 117 7.5 10.0 8.8 0.5 145 chr2L 19070262 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070407 intergenic not near genes chr2L_5_19070001 chr2L_19070001 D20-c5 320 chr2L 19144908 19145179 chr2L 19145011 19145291 4 107 4.5 2.0 3.2 1.0 383 chr2L 19144908 intron brat + chr2L 19145100 intron brat + chr2L 19145291 intron brat + chr2L_4_19145001 chr2L_19145001 D20-c5 321 chr2L 19147347 19147395 chr2L 19154407 19154454 297 6 7060 2.5 2.0 2.2 1.9 7107 chr2L 19147347 intron brat + chr2L 19150900 intron brat + chr2L 19154454 intron brat + chr2L_6_19150001 chr2L_19150001 D20-c5 322 chr2L 19357520 19357566 chr2L 19357635 19357681 19 114 4.0 1.0 2.5 5.4 161 chr2L 19357520 intron dnt - chr2L 19357600 intron dnt - chr2L 19357681 intron dnt - chr2L_19_19355001 chr2L_19355001 D20-c5 323 chr2L 19374479 19374519 chr2L 19374611 19374653 4 132 5.5 4.5 5.0 0.7 174 chr2L 19374479 intergenic not near genes chr2L 19374566 intergenic not near genes chr2L 19374653 intergenic not near genes chr2L_4_19370001 chr2L_19370001 D20-c5 324 chr2L 19379197 19379237 chr2L 19379362 19379402 6 165 7.5 8.5 8.0 0.7 205 chr2L 19379197 intergenic not near genes chr2L 19379300 intergenic not near genes chr2L 19379402 intergenic not near genes chr2L_6_19375001 chr2L_19375001 D20-c5 325 chr2L 19383975 19384014 chr2L 19384097 19384140 5 125 14.5 11.0 12.8 0.4 165 chr2L 19383975 exon fon - chr2L 19384058 exon fon - chr2L 19384140 exon fon - chr2L_5_19380001 chr2L_19380001 D20-c5 326 chr2L 19409520 19409668 chr2L 19409654 19409809 5 138 12.0 11.0 11.5 0.4 289 chr2L 19409520 exon Pax - chr2L 19409664 exon Pax - chr2L 19409809 exon Pax - chr2L_5_19405001 chr2L_19405001 D20-c5 327 chr2L 19489637 19489674 chr2L 19490442 19490485 6 806 18.0 13.0 15.5 0.4 848 chr2L 19489637 exon CG10194 - chr2L 19490061 exon CG10194 - chr2L 19490485 5` UTR CG18094 + chr2L_6_19490001 chr2L_19490001 D20-c5 328 chr2L 19557802 19557825 chr2L 19557919 19557942 6 117 1.0 1.5 1.2 2.7 140 chr2L 19557802 intergenic Tep5 + chr2L 19557872 intergenic Tep5 + chr2L 19557942 intergenic Tep5 + chr2L_6_19555001 chr2L_19555001 D20-c5 329 chr2L 19562509 19562536 chr2L 19562614 19562641 8 105 10.0 8.0 9.0 0.8 132 chr2L 19562509 exon Tep5 + chr2L 19562575 intron Tep5 + chr2L 19562641 exon Tep5 + chr2L_8_19560001 chr2L_19560001 D20-c5 330 chr2L 19620076 19620117 chr2L 19621088 19621129 jockey 12 1013 4.0 0.5 2.2 3.8 1053 chr2L 19620076 intron Lar + chr2L 19620602 intron Lar + chr2L 19621129 intron Lar + chr2L_12_19620001 chr2L_19620001 D20-c5 331 chr2L 19703518 19703565 chr2L 19712679 19712726 roo 6 9160 3.5 1.5 2.5 1.7 9208 chr2L 19703518 intron Lar + chr2L 19708122 intron Lar + chr2L 19712726 intron Lar + chr2L_6_19705001 chr2L_19705001 D20-c5 332 chr2L 19737372 19737388 chr2L 19740822 19740838 1360 5 3476 7.0 4.0 5.5 0.8 3466 chr2L 19737372 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740838 intergenic not near genes chr2L_5_19735001 chr2L_19735001 D20-c5 333 chr2L 19742335 19742385 chr2L 19742445 19742495 5 110 4.5 3.5 4.0 1.0 160 chr2L 19742335 intergenic CG10631 - chr2L 19742415 intergenic CG10631 - chr2L 19742495 intergenic CG10631 - chr2L_5_19740001 chr2L_19740001 D20-c5 334 chr2L 19762824 19762832 chr2L 19763060 19763099 pogo 5 261 2.0 4.0 3.0 1.2 275 chr2L 19762824 intron fbp - chr2L 19762962 intron fbp - chr2L 19763099 intron fbp - chr2L_5_19760001 chr2L_19760001 D20-c5 335 chr2L 19778559 19778587 chr2L 19778664 19778692 4 105 9.5 11.0 10.2 0.4 133 chr2L 19778559 exon CdGAPr - chr2L 19778626 exon CdGAPr - chr2L 19778692 exon CdGAPr - chr2L_4_19775001 chr2L_19775001 D20-c5 336 chr2L 19823242 19823292 chr2L 19823348 19823406 5 111 5.0 5.5 5.2 0.8 164 chr2L 19823242 intron sick + chr2L 19823324 intron sick + chr2L 19823406 intron sick + chr2L_5_19820001 chr2L_19820001 D20-c5 337 chr2L 19870408 19870447 chr2L 19870920 19870960 5 511 5.0 9.0 7.0 0.6 552 chr2L 19870408 intron sick + chr2L 19870684 intron sick + chr2L 19870960 intron sick + chr2L_5_19870001 chr2L_19870001 D20-c5 338 chr2L 19911273 19911315 chr2L 19911386 19911428 7 113 7.0 6.0 6.5 0.9 155 chr2L 19911273 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911428 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 D20-c5 339 chr2L 20041420 20041452 chr2L 20041529 20041562 6 109 6.0 8.0 7.0 0.8 142 chr2L 20041420 intron sNPF + chr2L 20041491 intron sNPF + chr2L 20041562 intron sNPF + chr2L_6_20040001 chr2L_20040001 D20-c5 340 chr2L 20272111 20272140 chr2L 20282838 20282876 copia 6 10734 2.5 3.0 2.8 1.6 10765 chr2L 20272111 intergenic not near genes chr2L 20277494 intergenic not near genes chr2L 20282876 intergenic not near genes chr2L_6_20275001 chr2L_20275001 D20-c5 341 chr2L 20296486 20296534 chr2L 20296592 20296630 8 103 0.0 1.5 0.8 4.4 144 chr2L 20296486 intergenic CR43414 - chr2L 20296558 intergenic CR43414 - chr2L 20296630 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 D20-c5 342 chr2L 20372203 20372234 chr2L 20372469 20372500 pogo 5 265 0.5 2.5 1.5 2.0 297 chr2L 20372203 intergenic Ugt37a1 - chr2L 20372352 intergenic Ugt37a1 - chr2L 20372500 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 D20-c5 343 chr2L 20498665 20498707 chr2L 20498789 20498830 8 123 6.0 3.0 4.5 1.5 165 chr2L 20498665 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498830 intergenic not near genes chr2L_8_20495001 chr2L_20495001 D20-c5 344 chr2L 20568641 20568674 chr2L 20569056 20569073 X-element 5 411 1.0 2.0 1.5 2.0 432 chr2L 20568641 intron CR45347 + chr2L 20568857 intron CR45347 + chr2L 20569073 intron CR45347 + chr2L_5_20565001 chr2L_20565001 D20-c5 345 chr2L 20576206 20576240 chr2L 20583699 20583733 blood 7 7493 2.0 1.5 1.8 2.5 7527 chr2L 20576206 intergenic CR45347 + chr2L 20579970 intergenic not near genes chr2L 20583733 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 D20-c5 346 chr2L 20623897 20623923 chr2L 20624001 20624027 4 100 3.0 5.5 4.2 0.8 130 chr2L 20623897 intron CR44909 - chr2L 20623962 intron CR44909 - chr2L 20624027 intron CR44909 - chr2L_4_20620001 chr2L_20620001 D20-c5 347 chr2L 20711661 20711685 chr2L 20711776 20711800 4 115 6.5 5.5 6.0 0.6 139 chr2L 20711661 intron,5` UTR Hr38 -,CR44188 + chr2L 20711730 intron,5` UTR Hr38 -,CR44188 + chr2L 20711800 intron,5` UTR Hr38 -,CR44188 + chr2L_4_20710001 chr2L_20710001 D20-c5 348 chr2L 20819089 20819142 chr2L 20819198 20819207 6 101 4.0 2.5 3.2 1.4 118 chr2L 20819089 intergenic not near genes chr2L 20819148 intergenic not near genes chr2L 20819207 intergenic not near genes chr2L_6_20815001 chr2L_20815001 D20-c5 349 chr2L 20821480 20821487 chr2L 20821653 20821660 4 173 7.5 7.5 7.5 0.5 180 chr2L 20821480 intergenic not near genes chr2L 20821570 intergenic not near genes chr2L 20821660 intergenic not near genes chr2L_4_20820001 chr2L_20820001 D20-c5 350 chr2L 20840007 20840054 chr2L 20840244 20840262 9 233 2.0 1.5 1.8 3.2 255 chr2L 20840007 intergenic not near genes chr2L 20840134 intergenic not near genes chr2L 20840262 intergenic CG31676 + chr2L_9_20840001 chr2L_20840001 D20-c5 351 chr2L 20901470 20901476 chr2L 20902658 20902664 1360 8 1188 3.0 3.5 3.2 1.9 1194 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902067 intron,intron CG43739 -,sky - chr2L 20902664 intron,intron CG43739 -,sky - chr2L_8_20900001 chr2L_20900001 D20-c5 352 chr2L 20911003 20911061 chr2L 20911104 20911162 6 101 6.0 7.0 6.5 0.8 159 chr2L 20911003 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911162 intron,intron CG43739 -,sky - chr2L_6_20910001 chr2L_20910001 D20-c5 353 chr2L 20946926 20946951 chr2L 20947036 20947061 8 110 4.5 4.0 4.2 1.5 135 chr2L 20946926 intergenic CR44606 - chr2L 20946994 intergenic CR44606 - chr2L 20947061 intergenic CR44606 - chr2L_8_20945001 chr2L_20945001 D20-c5 354 chr2L 20967071 20967107 chr2L 20967182 20967218 7 111 1.0 3.0 2.0 2.3 147 chr2L 20967071 3` UTR CG42238 - chr2L 20967144 3` UTR CG42238 - chr2L 20967218 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 D20-c5 355 chr2L 20991020 20991069 chr2L 20991123 20991168 7 102 1.5 1.5 1.5 2.8 148 chr2L 20991020 intron CG42238 - chr2L 20991094 intron CG42238 - chr2L 20991168 intron CG42238 - chr2L_7_20990001 chr2L_20990001 D20-c5 356 chr2L 21020256 21020280 chr2L 21023958 21023982 NOF 7 3701 2.5 4.0 3.2 1.7 3726 chr2L 21020256 intron CG42238 - chr2L 21022119 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_7_21020001 chr2L_21020001 D20-c5 357 chr2L 21020286 21020305 chr2L 21023952 21024007 NOF 5 3693 1.5 3.5 2.5 1.4 3721 chr2L 21020286 intron CG42238 - chr2L 21022146 intron CG42238 - chr2L 21024007 intron CG42238 - chr2L_5_21020001 chr2L_21020001 D20-c5 358 chr2L 21074921 21074950 chr2L 21075027 21075066 6 114 1.5 1.5 1.5 2.4 145 chr2L 21074921 intergenic tadr + chr2L 21074994 intergenic tadr + chr2L 21075066 intergenic tadr + chr2L_6_21070001 chr2L_21070001 D20-c5 359 chr2L 21086433 21086441 chr2L 21086563 21086565 4 133 4.0 3.0 3.5 0.9 132 chr2L 21086433 5` UTR CG33509 - chr2L 21086499 5` UTR CG33509 - chr2L 21086565 intergenic CG33509 -,ppk13 - chr2L_4_21085001 chr2L_21085001 D20-c5 360 chr2L 21088916 21088948 chr2L 21089016 21089053 5 106 1.5 5.0 3.2 1.2 137 chr2L 21088916 intergenic ppk13 -,CG9259 + chr2L 21088984 intergenic ppk13 -,CG9259 + chr2L 21089053 intergenic ppk13 -,CG9259 + chr2L_5_21085001 chr2L_21085001 D20-c5 361 chr2L 21158856 21158882 chr2L 21158950 21158984 4 100 10.0 7.5 8.8 0.4 128 chr2L 21158856 intergenic CG9248 +,CG9249 - chr2L 21158920 5` UTR CG9248 + chr2L 21158984 5` UTR CG9248 + chr2L_4_21155001 chr2L_21155001 D20-c5 362 chr2L 21179189 21179221 chr2L 21179295 21179321 6 101 12.0 7.5 9.8 0.6 132 chr2L 21179189 intron,5` UTR bur -,CR44911 + chr2L 21179255 intron,5` UTR bur -,CR44911 + chr2L 21179321 intron,5` UTR bur -,CR44911 + chr2L_6_21175001 chr2L_21175001 D20-c5 363 chr2L 21189410 21189439 chr2L 21189527 21189556 5 116 7.5 7.0 7.2 0.6 146 chr2L 21189410 intron Ret - chr2L 21189483 intron Ret - chr2L 21189556 intron Ret - chr2L_5_21185001 chr2L_21185001 D20-c5 364 chr2L 21347527 21347575 chr2L 21355024 21355069 blood 5 7496 0.5 0.5 0.5 3.3 7542 chr2L 21347527 intron Tsp39D + chr2L 21351298 intron Tsp39D + chr2L 21355069 intron Tsp39D + chr2L_5_21350001 chr2L_21350001 D20-c5 365 chr2L 21355587 21355630 chr2L 21355757 21355798 6 170 1.0 0.5 0.8 3.3 211 chr2L 21355587 exon Tsp39D + chr2L 21355692 intron Tsp39D + chr2L 21355798 intron Tsp39D + chr2L_6_21355001 chr2L_21355001 D20-c5 366 chr2L 21612543 21612577 chr2L 21612680 21612722 7 144 6.0 8.0 7.0 0.9 179 chr2L 21612543 intergenic not near genes chr2L 21612632 intergenic not near genes chr2L 21612722 intergenic not near genes chr2L_7_21610001 chr2L_21610001 D20-c5 367 chr2L 21691809 21691829 chr2L 21698304 21698324 Burdock 5 6494 3.0 0.0 1.5 2.0 6515 chr2L 21691809 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698324 intron CG31619 + chr2L_5_21695001 chr2L_21695001 D20-c5 368 chr2L 21755471 21755518 chr2L 21755620 21755651 4 145 5.5 3.5 4.5 0.7 180 chr2L 21755471 intron step - chr2L 21755561 intron step - chr2L 21755651 intron step - chr2L_4_21755001 chr2L_21755001 D20-c5 369 chr2L 21806203 21806242 chr2L 21806331 21806365 7 127 3.5 2.5 3.0 1.8 162 chr2L 21806203 intergenic not near genes chr2L 21806284 intergenic not near genes chr2L 21806365 intergenic not near genes chr2L_7_21805001 chr2L_21805001 D20-c5 370 chr2L 21808987 21809042 chr2L 21809218 21809272 5 231 5.5 6.0 5.8 0.7 285 chr2L 21808987 intergenic not near genes chr2L 21809130 intergenic not near genes chr2L 21809272 intergenic not near genes chr2L_5_21805001 chr2L_21805001 D20-c5 371 chr2L 21819305 21819358 chr2L 21819418 21819471 17 112 2.5 5.0 3.8 3.5 166 chr2L 21819305 intergenic CR44786 + chr2L 21819388 intergenic CR44786 + chr2L 21819471 intergenic CR44786 + chr2L_17_21815001 chr2L_21815001 D20-c5 372 chr2L 21855455 21855511 chr2L 21855566 21855623 8 110 2.0 2.0 2.0 2.7 168 chr2L 21855455 intron CR44917 + chr2L 21855539 intron CR44917 + chr2L 21855623 intron CR44917 + chr2L_8_21855001 chr2L_21855001 D20-c5 373 chr2L 21859303 21859345 chr2L 21859407 21859450 13 103 8.0 8.5 8.2 1.4 147 chr2L 21859303 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859450 intron CR44917 + chr2L_13_21855001 chr2L_21855001 D20-c5 374 chr2L 21905082 21905098 chr2L 21905217 21905233 4 134 10.5 12.0 11.2 0.3 151 chr2L 21905082 intergenic not near genes chr2L 21905158 intergenic not near genes chr2L 21905233 intergenic not near genes chr2L_4_21905001 chr2L_21905001 D20-c5 375 chr2L 21933907 21933921 chr2L 21934003 21934027 5 101 9.5 12.0 10.8 0.4 120 chr2L 21933907 intergenic not near genes chr2L 21933967 intergenic not near genes chr2L 21934027 intergenic not near genes chr2L_5_21930001 chr2L_21930001 D20-c5 376 chr2L 21953821 21953847 chr2L 21954697 21954723 4 876 15.0 31.0 23.0 0.2 902 chr2L 21953821 intergenic not near genes chr2L 21954272 intergenic not near genes chr2L 21954723 intergenic not near genes chr2L_4_21950001 chr2L_21950001 D20-c5 377 chr2L 21981679 21981707 chr2L 21990848 21990896 roo 8 9187 3.5 3.0 3.2 1.9 9217 chr2L 21981679 exon CG2528 - chr2L 21986288 intron CG2528 - chr2L 21990896 exon CG2528 - chr2L_8_21985001 chr2L_21985001 D20-c5 378 chr2L 22047253 22047257 chr2L 22047387 22047400 4 144 1.0 4.5 2.8 1.1 147 chr2L 22047253 intergenic not near genes chr2L 22047326 intergenic not near genes chr2L 22047400 intergenic not near genes chr2L_4_22045001 chr2L_22045001 D20-c5 379 chr2L 22192372 22192414 chr2L 22192475 22192517 11 98 11.0 14.0 12.5 0.8 145 chr2L 22192372 intron Ir40a - chr2L 22192444 intron Ir40a - chr2L 22192517 intron Ir40a - chr2L_11_22190001 chr2L_22190001 D20-c5 380 chr2L 22258595 22258645 chr2L 22260744 22260794 G6 4 2140 1.0 4.5 2.8 1.1 2199 chr2L 22258595 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260794 intergenic not near genes chr2L_4_22255001 chr2L_22255001 D20-c5 381 chr2L 22294355 22294380 chr2L 22294468 22294493 7 113 1.5 0.5 1.0 3.5 138 chr2L 22294355 intergenic not near genes chr2L 22294424 intergenic not near genes chr2L 22294493 intergenic not near genes chr2L_7_22290001 chr2L_22290001 D20-c5 382 chr2L 22696828 22696883 chr2L 22696933 22696990 5 106 10.0 6.0 8.0 0.6 162 chr2L 22696828 intron CG40006 - chr2L 22696909 intron CG40006 - chr2L 22696990 intron CG40006 - chr2L_5_22695001 chr2L_22695001 D20-c5 383 chr2L 22983919 22983959 chr2L 22984017 22984059 4 100 2.5 2.5 2.5 1.1 140 chr2L 22983919 intron cta + chr2L 22983989 intron cta + chr2L 22984059 intron cta + chr2L_4_22980001 chr2L_22980001 D20-c5 384 chr2R 469940 469975 chr2R 473206 473238 F-element 5 3264 5.0 0.0 2.5 1.4 3298 chr2R 469940 intergenic not near genes chr2R 471589 intergenic not near genes chr2R 473238 intergenic not near genes chr2R_5_470001 chr2R_470001 D20-c5 385 chr2R 552744 552787 chr2R 553987 554025 1360 6 1230 7.0 9.0 8.0 0.7 1281 chr2R 552744 intron CG40378 + chr2R 553384 intron CG40378 + chr2R 554025 intron CG40378 + chr2R_6_550001 chr2R_550001 D20-c5 386 chr2R 1082365 1082380 chr2R 1087164 1087181 Doc 5 4800 6.0 8.5 7.2 0.6 4816 chr2R 1082365 intron rl + chr2R 1084773 intron rl + chr2R 1087181 intron rl + chr2R_5_1080001 chr2R_1080001 D20-c5 387 chr2R 1516583 1516602 chr2R 1521336 1521355 1731 8 4753 12.5 10.0 11.2 0.7 4772 chr2R 1516583 exon Maf1 - chr2R 1518969 intron Maf1 - chr2R 1521355 5` UTR Maf1 - chr2R_8_1515001 chr2R_1515001 D20-c5 388 chr2R 1919588 1919604 chr2R 1920039 1920056 5 452 15.0 13.0 14.0 0.3 468 chr2R 1919588 intron CG17684 - chr2R 1919822 intron CG17684 - chr2R 1920056 intron CG17684 - chr2R_5_1915001 chr2R_1915001 D20-c5 389 chr2R 2110485 2110496 chr2R 2118068 2118078 17.6 6 7582 12.0 10.5 11.2 0.5 7593 chr2R 2110485 intron CG17684 - chr2R 2114282 intron CG17684 - chr2R 2118078 intron CG17684 - chr2R_6_2110001 chr2R_2110001 D20-c5 390 chr2R 2498965 2498989 chr2R 2508137 2508161 roo 4 9172 2.5 1.0 1.8 1.4 9196 chr2R 2498965 intron MFS17 - chr2R 2503563 intron MFS17 - chr2R 2508161 intron MFS17 - chr2R_4_2500001 chr2R_2500001 D20-c5 391 chr2R 2942269 2942318 chr2R 2942397 2942439 4 126 7.5 5.0 6.2 0.6 170 chr2R 2942269 intron Scp1 - chr2R 2942354 intron Scp1 - chr2R 2942439 intron Scp1 - chr2R_4_2940001 chr2R_2940001 D20-c5 392 chr2R 2944950 2944981 chr2R 2945057 2945086 7 105 13.5 13.0 13.2 0.5 136 chr2R 2944950 intron Scp1 - chr2R 2945018 intron Scp1 - chr2R 2945086 intron Scp1 - chr2R_7_2945001 chr2R_2945001 D20-c5 393 chr2R 3144092 3144108 chr2R 3393386 3393411 Doc 4 249300 8.5 14.5 11.5 0.3 249319 chr2R 3144092 intron CG42596 + chr2R 3268752 intergenic not near genes chr2R 3393411 intergenic not near genes chr2R_4_3265001 chr2R_3265001 D20-c5 394 chr2R 3587218 3587259 chr2R 3587320 3587361 7 102 10.5 13.5 12.0 0.5 143 chr2R 3587218 intergenic not near genes chr2R 3587290 intergenic not near genes chr2R 3587361 intergenic not near genes chr2R_7_3585001 chr2R_3585001 D20-c5 395 chr2R 4602822 4602865 chr2R 4603202 4603245 8 379 10.5 13.0 11.8 0.6 423 chr2R 4602822 intron p120ctn + chr2R 4603034 intron p120ctn + chr2R 4603245 intron p120ctn + chr2R_8_4600001 chr2R_4600001 D20-c5 396 chr2R 4750351 4750374 chr2R 4751533 4751555 1360 6 1180 1.5 5.5 3.5 1.3 1204 chr2R 4750351 intron conu + chr2R 4750953 intron conu + chr2R 4751555 intron conu + chr2R_6_4750001 chr2R_4750001 D20-c5 397 chr2R 4783229 4783268 chr2R 4783388 4783427 9 159 5.5 7.5 6.5 1.2 198 chr2R 4783229 intergenic not near genes chr2R 4783328 intergenic not near genes chr2R 4783427 intergenic not near genes chr2R_9_4780001 chr2R_4780001 D20-c5 398 chr2R 4838849 4838898 chr2R 4840397 4840446 transib2 11 1548 4.0 1.0 2.5 3.1 1597 chr2R 4838849 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840446 intergenic not near genes chr2R_11_4835001 chr2R_4835001 D20-c5 399 chr2R 5019260 5019307 chr2R 5019371 5019418 4 111 4.0 3.5 3.8 0.8 158 chr2R 5019260 intron Ir41a + chr2R 5019339 intron Ir41a + chr2R 5019418 intron Ir41a + chr2R_4_5015001 chr2R_5015001 D20-c5 400 chr2R 5029009 5029066 chr2R 5029116 5029173 9 106 6.5 7.0 6.8 1.2 164 chr2R 5029009 intergenic not near genes chr2R 5029091 intergenic not near genes chr2R 5029173 intergenic not near genes chr2R_9_5025001 chr2R_5025001 D20-c5 401 chr2R 5038500 5038519 chr2R 5039322 5039340 4 822 9.5 6.5 8.0 0.4 840 chr2R 5038500 intergenic not near genes chr2R 5038920 intergenic not near genes chr2R 5039340 intergenic not near genes chr2R_4_5035001 chr2R_5035001 D20-c5 402 chr2R 5075208 5075219 chr2R 5075361 5075371 4 152 7.5 5.5 6.5 0.5 163 chr2R 5075208 intergenic not near genes chr2R 5075290 intergenic not near genes chr2R 5075371 intergenic not near genes chr2R_4_5075001 chr2R_5075001 D20-c5 403 chr2R 5075242 5075370 chr2R 5075757 5075810 4 478 5.5 4.5 5.0 0.7 568 chr2R 5075242 intergenic not near genes chr2R 5075526 intergenic not near genes chr2R 5075810 intergenic not near genes chr2R_4_5075001 chr2R_5075001 D20-c5 404 chr2R 5075957 5075987 chr2R 5076094 5076124 6 138 8.5 8.0 8.2 0.7 167 chr2R 5075957 intergenic not near genes chr2R 5076040 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_6_5075001 chr2R_5075001 D20-c5 405 chr2R 5078654 5078702 chr2R 5078789 5078837 4 135 4.0 8.0 6.0 0.6 183 chr2R 5078654 intergenic not near genes chr2R 5078746 intergenic not near genes chr2R 5078837 intergenic not near genes chr2R_4_5075001 chr2R_5075001 D20-c5 406 chr2R 5080767 5080799 chr2R 5080878 5080915 5 112 7.5 5.5 6.5 0.7 148 chr2R 5080767 intergenic not near genes chr2R 5080841 intergenic not near genes chr2R 5080915 intergenic not near genes chr2R_5_5080001 chr2R_5080001 D20-c5 407 chr2R 5103034 5103074 chr2R 5103141 5103181 7 107 18.5 15.0 16.8 0.4 147 chr2R 5103034 intergenic not near genes chr2R 5103108 intergenic not near genes chr2R 5103181 intergenic not near genes chr2R_7_5100001 chr2R_5100001 D20-c5 408 chr2R 5140002 5140049 chr2R 5140146 5140182 7 142 7.5 9.5 8.5 0.7 180 chr2R 5140002 intergenic not near genes chr2R 5140092 intergenic not near genes chr2R 5140182 intergenic not near genes chr2R_7_5140001 chr2R_5140001 D20-c5 409 chr2R 5150584 5150623 chr2R 5150691 5150729 4 107 14.0 11.5 12.8 0.3 145 chr2R 5150584 intron Atf6 + chr2R 5150656 intron Atf6 + chr2R 5150729 intron Atf6 + chr2R_4_5150001 chr2R_5150001 D20-c5 410 chr2R 5237331 5237366 chr2R 5237434 5237473 8 106 2.5 0.0 1.2 3.6 142 chr2R 5237331 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237473 intron Nipped-A - chr2R_8_5235001 chr2R_5235001 D20-c5 411 chr2R 5240212 5240224 chr2R 5240313 5240325 6 100 9.5 4.0 6.8 0.8 113 chr2R 5240212 intron Nipped-A - chr2R 5240268 intron Nipped-A - chr2R 5240325 intron Nipped-A - chr2R_6_5240001 chr2R_5240001 D20-c5 412 chr2R 5364440 5364486 chr2R 5364546 5364592 5 106 10.0 10.5 10.2 0.4 152 chr2R 5364440 intron CR42646 + chr2R 5364516 5` UTR CR42646 + chr2R 5364592 intron CR42646 + chr2R_5_5360001 chr2R_5360001 D20-c5 413 chr2R 5417979 5418022 chr2R 5420636 5420677 Burdock 6 2657 2.5 1.5 2.0 2.0 2698 chr2R 5417979 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420677 intron laccase2 + chr2R_6_5415001 chr2R_5415001 D20-c5 414 chr2R 5455752 5455787 chr2R 5455855 5455890 4 103 3.5 7.0 5.2 0.6 138 chr2R 5455752 3` UTR laccase2 + chr2R 5455821 3` UTR laccase2 + chr2R 5455890 3` UTR laccase2 + chr2R_4_5455001 chr2R_5455001 D20-c5 415 chr2R 5472340 5472386 chr2R 5472459 5472505 10 119 4.0 0.5 2.2 3.1 165 chr2R 5472340 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472505 intron CG30440 - chr2R_10_5470001 chr2R_5470001 D20-c5 416 chr2R 5509510 5509545 chr2R 5509629 5509666 4 120 7.0 7.0 7.0 0.5 156 chr2R 5509510 intron CG30438 + chr2R 5509588 intron CG30438 + chr2R 5509666 intron CG30438 + chr2R_4_5505001 chr2R_5505001 D20-c5 417 chr2R 5664256 5664303 chr2R 5664361 5664364 5 96 9.0 8.5 8.8 0.5 108 chr2R 5664256 5` UTR CR45472 + chr2R 5664310 intron CR45472 + chr2R 5664364 intron CR45472 + chr2R_5_5660001 chr2R_5660001 D20-c5 418 chr2R 5750445 5750453 chr2R 5750555 5750570 4 112 3.0 2.0 2.5 1.1 125 chr2R 5750445 intergenic not near genes chr2R 5750508 intergenic not near genes chr2R 5750570 intergenic not near genes chr2R_4_5750001 chr2R_5750001 D20-c5 419 chr2R 5837094 5837142 chr2R 5837215 5837263 7 121 9.5 7.5 8.5 0.7 169 chr2R 5837094 intron dpr12 + chr2R 5837178 intron dpr12 + chr2R 5837263 intron dpr12 + chr2R_7_5835001 chr2R_5835001 D20-c5 420 chr2R 6096699 6096741 chr2R 6101920 6101964 BS 10 5221 0.5 4.5 2.5 2.9 5265 chr2R 6096699 intron EcR - chr2R 6099332 intron EcR - chr2R 6101964 intron EcR - chr2R_10_6095001 chr2R_6095001 D20-c5 421 chr2R 6194670 6194696 chr2R 6194771 6194804 9 107 3.5 2.0 2.8 2.4 134 chr2R 6194670 intron Ptr - chr2R 6194737 intron Ptr - chr2R 6194804 intron Ptr - chr2R_9_6190001 chr2R_6190001 D20-c5 422 chr2R 6494512 6494527 chr2R 6499297 6499314 F-element 5 4786 6.0 3.0 4.5 0.9 4802 chr2R 6494512 intergenic not near genes chr2R 6496913 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_5_6495001 chr2R_6495001 D20-c5 423 chr2R 6539801 6539855 chr2R 6539949 6539995 8 141 2.0 1.5 1.8 2.9 194 chr2R 6539801 intron jing + chr2R 6539898 intron jing + chr2R 6539995 intron jing + chr2R_8_6535001 chr2R_6535001 D20-c5 424 chr2R 6546693 6546749 chr2R 6546819 6546875 9 124 1.0 3.5 2.2 2.8 182 chr2R 6546693 intron jing + chr2R 6546784 intron jing + chr2R 6546875 intron jing + chr2R_9_6545001 chr2R_6545001 D20-c5 425 chr2R 6603914 6603956 chr2R 6604031 6604072 16 117 2.5 0.5 1.5 6.4 158 chr2R 6603914 intron jing + chr2R 6603993 intron jing + chr2R 6604072 intron jing + chr2R_16_6600001 chr2R_6600001 D20-c5 426 chr2R 6633183 6633224 chr2R 6633285 6633323 6 102 2.5 1.0 1.8 2.1 140 chr2R 6633183 intergenic Vha16-1 -,Trap1 - chr2R 6633253 intergenic Vha16-1 -,Trap1 - chr2R 6633323 intergenic Vha16-1 -,Trap1 - chr2R_6_6630001 chr2R_6630001 D20-c5 427 chr2R 6646779 6646814 chr2R 6647076 6647112 5 297 0.5 0.5 0.5 3.3 333 chr2R 6646779 intergenic not near genes chr2R 6646946 intergenic not near genes chr2R 6647112 intergenic not near genes chr2R_5_6645001 chr2R_6645001 D20-c5 428 chr2R 6941455 6941505 chr2R 6941603 6941653 12 148 2.0 2.0 2.0 4.0 198 chr2R 6941455 intron mim - chr2R 6941554 intron mim - chr2R 6941653 intron mim - chr2R_12_6940001 chr2R_6940001 D20-c5 429 chr2R 6948102 6948147 chr2R 6951869 6951906 6 3760 17.5 20.5 19.0 0.3 3804 chr2R 6948102 intron,intron mim -,CheB42c - chr2R 6950004 intron,intron,intron mim -,CheB42c -,CheB42a + chr2R 6951906 intron,intron,intron mim -,CheB42c -,ppk25 + chr2R_6_6950001 chr2R_6950001 D20-c5 430 chr2R 7103358 7103411 chr2R 7103459 7103510 7 100 2.5 2.5 2.5 2.0 152 chr2R 7103358 intron esn + chr2R 7103434 intron esn + chr2R 7103510 intron esn + chr2R_7_7100001 chr2R_7100001 D20-c5 431 chr2R 7164256 7164284 chr2R 7164472 7164484 8 214 3.5 5.5 4.5 1.5 228 chr2R 7164256 intron pk + chr2R 7164370 intron pk + chr2R 7164484 intron pk + chr2R_8_7160001 chr2R_7160001 D20-c5 432 chr2R 7196557 7196589 chr2R 7201357 7201389 F-element 6 4799 1.0 1.5 1.2 2.7 4832 chr2R 7196557 intron pk + chr2R 7198973 intron pk + chr2R 7201389 intron pk + chr2R_6_7195001 chr2R_7195001 D20-c5 433 chr2R 7235818 7235844 chr2R 7240932 7240953 jockey 6 5113 3.5 6.0 4.8 1.0 5135 chr2R 7235818 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240953 intergenic not near genes chr2R_6_7235001 chr2R_7235001 D20-c5 434 chr2R 7371721 7371773 chr2R 7371850 7371902 6 129 10.0 10.5 10.2 0.5 181 chr2R 7371721 intron Dscam1 - chr2R 7371812 intron Dscam1 - chr2R 7371902 intron Dscam1 - chr2R_6_7370001 chr2R_7370001 D20-c5 435 chr2R 7434874 7434902 chr2R 7439200 7439228 Juan 7 4325 0.5 1.5 1.0 3.5 4354 chr2R 7434874 intergenic so + chr2R 7437051 intergenic not near genes chr2R 7439228 intergenic not near genes chr2R_7_7435001 chr2R_7435001 D20-c5 436 chr2R 7608392 7608442 chr2R 7613620 7613669 I-element 5 5227 0.5 0.0 0.2 4.2 5277 chr2R 7608392 intron CG1358 - chr2R 7611030 intron CG1358 - chr2R 7613669 intron CG1358 - chr2R_5_7610001 chr2R_7610001 D20-c5 437 chr2R 7618512 7618549 chr2R 7618697 7618734 4 185 10.0 11.0 10.5 0.3 222 chr2R 7618512 intron CG1358 - chr2R 7618623 intron CG1358 - chr2R 7618734 intron CG1358 - chr2R_4_7615001 chr2R_7615001 D20-c5 438 chr2R 7642862 7642868 chr2R 7642967 7642973 4 105 8.5 8.0 8.2 0.4 111 chr2R 7642862 intron CG43340 + chr2R 7642918 intron CG43340 + chr2R 7642973 intron CG43340 + chr2R_4_7640001 chr2R_7640001 D20-c5 439 chr2R 7677411 7677442 chr2R 7677564 7677582 5 150 2.5 2.5 2.5 1.4 171 chr2R 7677411 3` UTR CG1399 - chr2R 7677496 3` UTR CG1399 - chr2R 7677582 3` UTR CG1399 - chr2R_5_7675001 chr2R_7675001 D20-c5 440 chr2R 7815649 7815701 chr2R 7822143 7822151 Burdock 5 6485 2.0 1.5 1.8 1.8 6502 chr2R 7815649 intergenic CG1882 + chr2R 7818900 intergenic not near genes chr2R 7822151 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 D20-c5 441 chr2R 7862207 7862251 chr2R 7867346 7867389 flea 4 5139 5.5 1.0 3.2 1.0 5182 chr2R 7862207 intron Dgk - chr2R 7864798 intron Dgk - chr2R 7867389 intron Dgk - chr2R_4_7860001 chr2R_7860001 D20-c5 442 chr2R 7869169 7869220 chr2R 7873980 7874015 Doc 13 4809 2.5 4.0 3.2 3.1 4846 chr2R 7869169 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7874015 intron Dgk - chr2R_13_7870001 chr2R_7870001 D20-c5 443 chr2R 7920163 7920184 chr2R 7920275 7920295 6 112 13.5 14.5 14.0 0.4 132 chr2R 7920163 exon Cul1 + chr2R 7920229 exon Cul1 + chr2R 7920295 exon Cul1 + chr2R_6_7920001 chr2R_7920001 D20-c5 444 chr2R 7920004 7920022 chr2R 7924503 7924529 6 4500 18.0 25.5 21.8 0.3 4525 chr2R 7920004 exon Cul1 + chr2R 7922266 exon Or43b - chr2R 7924529 exon Kdm4A - chr2R_6_7920001 chr2R_7920001 D20-c5 445 chr2R 8026786 8026834 chr2R 8026887 8026932 5 100 4.5 4.0 4.2 1.0 146 chr2R 8026786 intergenic CR45267 + chr2R 8026859 intergenic CR45267 + chr2R 8026932 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 D20-c5 446 chr2R 8051201 8051243 chr2R 8051310 8051353 6 108 5.0 5.0 5.0 1.0 152 chr2R 8051201 intergenic not near genes chr2R 8051277 intergenic not near genes chr2R 8051353 intergenic not near genes chr2R_6_8050001 chr2R_8050001 D20-c5 447 chr2R 8105933 8105965 chr2R 8106049 8106080 5 114 5.5 10.0 7.8 0.6 147 chr2R 8105933 5` UTR Cul4 - chr2R 8106006 intron Cul4 - chr2R 8106080 5` UTR Cul4 - chr2R_5_8105001 chr2R_8105001 D20-c5 448 chr2R 8155565 8155608 chr2R 8155679 8155719 9 112 1.5 3.0 2.2 2.8 154 chr2R 8155565 intron,intron Lpin -,kermit - chr2R 8155642 intron,intron Lpin -,kermit - chr2R 8155719 intron,intron Lpin -,kermit - chr2R_9_8155001 chr2R_8155001 D20-c5 449 chr2R 8157876 8157910 chr2R 8157988 8158023 5 112 13.0 9.0 11.0 0.4 147 chr2R 8157876 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8158023 5` UTR CR44068 + chr2R_5_8155001 chr2R_8155001 D20-c5 450 chr2R 8160915 8160940 chr2R 8161030 8161055 1360 4 115 10.0 14.0 12.0 0.3 140 chr2R 8160915 exon CG8708 - chr2R 8160985 intron CG8708 - chr2R 8161055 intron CG8708 - chr2R_4_8160001 chr2R_8160001 D20-c5 451 chr2R 8191863 8191872 chr2R 8191976 8191977 4 111 3.5 3.5 3.5 0.9 114 chr2R 8191863 intron LRP1 + chr2R 8191920 intron LRP1 + chr2R 8191977 intron LRP1 + chr2R_4_8190001 chr2R_8190001 D20-c5 452 chr2R 8330835 8330888 chr2R 8331346 8331399 roo 5 511 3.5 0.5 2.0 1.7 564 chr2R 8330835 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331399 intron pdm3 + chr2R_5_8330001 chr2R_8330001 D20-c5 453 chr2R 8398192 8398241 chr2R 8402997 8403047 Doc 18 4805 6.5 6.5 6.5 2.4 4855 chr2R 8398192 intron CG2121 - chr2R 8400620 intron CG2121 - chr2R 8403047 intron CG2121 - chr2R_18_8400001 chr2R_8400001 D20-c5 454 chr2R 8416302 8416309 chr2R 8417151 8417158 I-element 4 849 7.5 6.5 7.0 0.5 856 chr2R 8416302 intergenic not near genes chr2R 8416730 intergenic CG43296 - chr2R 8417158 intergenic CG43296 - chr2R_4_8415001 chr2R_8415001 D20-c5 455 chr2R 8419335 8419364 chr2R 8419443 8419472 7 108 5.5 9.5 7.5 0.8 137 chr2R 8419335 intergenic not near genes chr2R 8419404 intergenic not near genes chr2R 8419472 intergenic not near genes chr2R_7_8415001 chr2R_8415001 D20-c5 456 chr2R 8397826 8397874 chr2R 8460341 8460390 6 62515 33.0 26.0 29.5 0.2 62564 chr2R 8397826 exon CG2121 - chr2R 8429108 intergenic not near genes chr2R 8460390 exon Mal-A4 + chr2R_6_8425001 chr2R_8425001 D20-c5 457 chr2R 8512751 8512799 chr2R 8512855 8512903 11 104 11.5 13.5 12.5 0.8 152 chr2R 8512751 intron mtt - chr2R 8512827 intron mtt - chr2R 8512903 intron mtt - chr2R_11_8510001 chr2R_8510001 D20-c5 458 chr2R 8722739 8722793 chr2R 8723005 8723049 pogo 10 264 1.5 4.5 3.0 2.5 310 chr2R 8722739 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723049 intron CG14767 - chr2R_10_8720001 chr2R_8720001 D20-c5 459 chr2R 8924432 8924459 chr2R 8924534 8924561 6 101 12.5 9.0 10.8 0.5 129 chr2R 8924432 exon CG8243 + chr2R 8924496 exon CG8243 + chr2R 8924561 exon CG8243 + chr2R_6_8920001 chr2R_8920001 D20-c5 460 chr2R 8960444 8960472 chr2R 8960620 8960648 4 176 10.5 9.0 9.8 0.4 204 chr2R 8960444 exon babo + chr2R 8960546 3` UTR babo + chr2R 8960648 3` UTR babo + chr2R_4_8960001 chr2R_8960001 D20-c5 461 chr2R 9033504 9033556 chr2R 9033629 9033682 8 125 8.5 11.5 10.0 0.7 178 chr2R 9033504 intergenic not near genes chr2R 9033593 intergenic not near genes chr2R 9033682 intergenic not near genes chr2R_8_9030001 chr2R_9030001 D20-c5 462 chr2R 9075884 9075929 chr2R 9076044 9076089 5 160 6.0 6.0 6.0 0.7 205 chr2R 9075884 exon ana + chr2R 9075986 intron ana + chr2R 9076089 intron ana + chr2R_5_9075001 chr2R_9075001 D20-c5 463 chr2R 9151280 9151326 chr2R 9157774 9157814 Burdock 11 6493 4.5 1.0 2.8 2.9 6534 chr2R 9151280 exon CG30345 + chr2R 9154547 intergenic not near genes chr2R 9157814 intergenic CG8008 - chr2R_11_9150001 chr2R_9150001 D20-c5 464 chr2R 9212676 9212720 chr2R 9213183 9213231 roo 15 511 3.0 5.5 4.2 2.9 555 chr2R 9212676 intergenic CR45309 + chr2R 9212954 intergenic CR45309 + chr2R 9213231 5` UTR CR45309 + chr2R_15_9210001 chr2R_9210001 D20-c5 465 chr2R 9249228 9249278 chr2R 9249337 9249385 4 108 4.0 6.5 5.2 0.6 157 chr2R 9249228 intergenic not near genes chr2R 9249306 intergenic not near genes chr2R 9249385 intergenic not near genes chr2R_4_9245001 chr2R_9245001 D20-c5 466 chr2R 9256045 9256073 chr2R 9256153 9256181 8 106 10.0 15.5 12.8 0.6 136 chr2R 9256045 intron Pkn - chr2R 9256113 intron Pkn - chr2R 9256181 intron Pkn - chr2R_8_9255001 chr2R_9255001 D20-c5 467 chr2R 9282040 9282100 chr2R 9286045 9286105 10 4006 16.0 33.0 24.5 0.4 4065 chr2R 9282040 intron Pkn - chr2R 9284072 5` UTR Pkn - chr2R 9286105 exon CG2063 - chr2R_10_9280001 chr2R_9280001 D20-c5 468 chr2R 9329978 9330019 chr2R 9330089 9330130 8 111 5.0 3.5 4.2 1.5 152 chr2R 9329978 intron,intron CG13739 -,CG13954 - chr2R 9330054 intron,intron CG13739 -,CG13954 - chr2R 9330130 intron,intron CG13739 -,CG13954 - chr2R_8_9330001 chr2R_9330001 D20-c5 469 chr2R 9368112 9368138 chr2R 9368212 9368239 4 101 12.0 8.5 10.2 0.4 127 chr2R 9368112 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368239 intron CG13954 - chr2R_4_9365001 chr2R_9365001 D20-c5 470 chr2R 9391048 9391074 chr2R 9391634 9391658 5 585 5.5 9.0 7.2 0.6 610 chr2R 9391048 exon l(2)03659 + chr2R 9391353 exon l(2)03659 + chr2R 9391658 exon l(2)03659 + chr2R_5_9390001 chr2R_9390001 D20-c5 471 chr2R 9429770 9429824 chr2R 9429900 9429953 9 128 6.5 9.5 8.0 1.0 183 chr2R 9429770 intron Pdk + chr2R 9429862 intron Pdk + chr2R 9429953 intron Pdk + chr2R_9_9425001 chr2R_9425001 D20-c5 472 chr2R 9509410 9509455 chr2R 9509519 9509563 6 107 5.0 1.0 3.0 1.5 153 chr2R 9509410 intron brp + chr2R 9509486 intron brp + chr2R 9509563 intron brp + chr2R_6_9505001 chr2R_9505001 D20-c5 473 chr2R 9629561 9629601 chr2R 9629767 9629806 5 205 1.5 1.0 1.2 2.3 245 chr2R 9629561 intron Mmp2 - chr2R 9629684 intron Mmp2 - chr2R 9629806 intron Mmp2 - chr2R_5_9625001 chr2R_9625001 D20-c5 474 chr2R 9671172 9671218 chr2R 9671274 9671320 5 102 1.0 3.5 2.2 1.6 148 chr2R 9671172 intron Mmp2 - chr2R 9671246 intron Mmp2 - chr2R 9671320 intron Mmp2 - chr2R_5_9670001 chr2R_9670001 D20-c5 475 chr2R 9699382 9699425 chr2R 9699493 9699536 11 110 3.0 0.0 1.5 4.4 154 chr2R 9699382 intergenic not near genes chr2R 9699459 intergenic not near genes chr2R 9699536 intergenic not near genes chr2R_11_9695001 chr2R_9695001 D20-c5 476 chr2R 9707205 9707251 chr2R 9707325 9707371 12 120 3.0 2.0 2.5 3.4 166 chr2R 9707205 exon CG1773 + chr2R 9707288 exon CG1773 + chr2R 9707371 exon CG1773 + chr2R_12_9705001 chr2R_9705001 D20-c5 477 chr2R 9725026 9725080 chr2R 9725130 9725184 4 104 1.0 2.0 1.5 1.6 158 chr2R 9725026 intron sqa - chr2R 9725105 intron sqa - chr2R 9725184 intron sqa - chr2R_4_9725001 chr2R_9725001 D20-c5 478 chr2R 9726611 9726634 chr2R 9734187 9734200 17.6 4 7574 1.0 4.0 2.5 1.1 7589 chr2R 9726611 intron sqa - chr2R 9730406 intron sqa - chr2R 9734200 intron sqa - chr2R_4_9730001 chr2R_9730001 D20-c5 479 chr2R 9871051 9871064 chr2R 9871560 9871560 roo 4 507 0.0 7.0 3.5 0.9 509 chr2R 9871051 intron cbx - chr2R 9871306 intron cbx - chr2R 9871560 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 D20-c5 480 chr2R 9945418 9945445 chr2R 9945639 9945666 BS 4 221 2.0 0.5 1.2 1.8 248 chr2R 9945418 intron Mef2 - chr2R 9945542 intron Mef2 - chr2R 9945666 intron Mef2 - chr2R_4_9945001 chr2R_9945001 D20-c5 481 chr2R 10005539 10005580 chr2R 10005661 10005663 6 115 1.5 1.5 1.5 2.4 124 chr2R 10005539 intron Pka-R2 - chr2R 10005601 intron Pka-R2 - chr2R 10005663 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 D20-c5 482 chr2R 10005826 10005867 chr2R 10007016 10007057 1360 7 1190 3.0 1.0 2.0 2.3 1231 chr2R 10005826 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007057 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 D20-c5 483 chr2R 10132173 10132178 chr2R 10132272 10132282 4 103 3.5 2.0 2.8 1.1 109 chr2R 10132173 intron gem + chr2R 10132228 intron gem + chr2R 10132282 intron gem + chr2R_4_10130001 chr2R_10130001 D20-c5 484 chr2R 10132181 10132214 chr2R 10132270 10132319 5 102 0.5 2.0 1.2 2.3 138 chr2R 10132181 intron gem + chr2R 10132250 intron gem + chr2R 10132319 exon gem + chr2R_5_10130001 chr2R_10130001 D20-c5 485 chr2R 10167110 10167137 chr2R 10167211 10167238 8 100 3.5 5.5 4.5 1.5 128 chr2R 10167110 intron KCNQ - chr2R 10167174 intron KCNQ - chr2R 10167238 intron KCNQ - chr2R_8_10165001 chr2R_10165001 D20-c5 486 chr2R 10171086 10171142 chr2R 10171195 10171243 8 108 0.5 5.0 2.8 2.1 157 chr2R 10171086 intron KCNQ - chr2R 10171164 intron KCNQ - chr2R 10171243 intron KCNQ - chr2R_8_10170001 chr2R_10170001 D20-c5 487 chr2R 10176095 10176154 chr2R 10176199 10176251 13 103 1.0 3.0 2.0 4.3 156 chr2R 10176095 intron KCNQ - chr2R 10176173 intron KCNQ - chr2R 10176251 intron KCNQ - chr2R_13_10175001 chr2R_10175001 D20-c5 488 chr2R 10190415 10190450 chr2R 10190524 10190550 4 106 6.0 3.0 4.5 0.7 135 chr2R 10190415 intron KCNQ - chr2R 10190482 intron KCNQ - chr2R 10190550 intron KCNQ - chr2R_4_10190001 chr2R_10190001 D20-c5 489 chr2R 10225711 10225747 chr2R 10225818 10225854 8 105 3.0 2.0 2.5 2.3 143 chr2R 10225711 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225854 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 D20-c5 490 chr2R 10266487 10266531 chr2R 10266587 10266623 17 105 2.5 5.0 3.8 3.5 136 chr2R 10266487 intron CG12910 + chr2R 10266555 intron CG12910 + chr2R 10266623 intron CG12910 + chr2R_17_10265001 chr2R_10265001 D20-c5 491 chr2R 10313305 10313345 chr2R 10313418 10313458 6 113 0.0 2.5 1.2 2.7 153 chr2R 10313305 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313458 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 D20-c5 492 chr2R 10354547 10354568 chr2R 10354658 10354679 4 111 3.0 1.0 2.0 1.3 132 chr2R 10354547 intron CG42732 - chr2R 10354613 intron CG42732 - chr2R 10354679 intron CG42732 - chr2R_4_10350001 chr2R_10350001 D20-c5 493 chr2R 10363849 10363882 chr2R 10363953 10363986 6 104 2.5 1.0 1.8 2.1 137 chr2R 10363849 intron CG42732 - chr2R 10363918 intron CG42732 - chr2R 10363986 intron CG42732 - chr2R_6_10360001 chr2R_10360001 D20-c5 494 chr2R 10374775 10374793 chr2R 10374872 10374889 4 98 0.0 3.5 1.8 1.4 114 chr2R 10374775 intron CG42732 - chr2R 10374832 intron CG42732 - chr2R 10374889 intron CG42732 - chr2R_4_10370001 chr2R_10370001 D20-c5 495 chr2R 10376717 10376862 chr2R 10376862 10377009 4 147 0.0 0.0 0.0 4.0 292 chr2R 10376717 intron CG42732 - chr2R 10376863 intron CG42732 - chr2R 10377009 intron CG42732 - chr2R_4_10375001 chr2R_10375001 D20-c5 496 chr2R 10387977 10388001 chr2R 10388091 10388123 5 120 0.0 6.0 3.0 1.2 146 chr2R 10387977 intron CG42732 - chr2R 10388050 intron CG42732 - chr2R 10388123 intron CG42732 - chr2R_5_10385001 chr2R_10385001 D20-c5 497 chr2R 10429020 10429041 chr2R 10429122 10429143 4 102 2.5 1.5 2.0 1.3 123 chr2R 10429020 intergenic not near genes chr2R 10429082 intergenic not near genes chr2R 10429143 intergenic not near genes chr2R_4_10425001 chr2R_10425001 D20-c5 498 chr2R 10558213 10558231 chr2R 10558313 10558331 4 100 4.0 7.0 5.5 0.6 118 chr2R 10558213 5` UTR psq + chr2R 10558272 5` UTR psq + chr2R 10558331 5` UTR psq + chr2R_4_10555001 chr2R_10555001 D20-c5 499 chr2R 10644036 10644073 chr2R 10644139 10644174 4 102 2.0 0.0 1.0 2.0 138 chr2R 10644036 intron Git - chr2R 10644105 intron Git - chr2R 10644174 intron Git - chr2R_4_10640001 chr2R_10640001 D20-c5 500 chr2R 10781398 10781401 chr2R 10781759 10781780 6 370 2.0 1.5 1.8 2.1 382 chr2R 10781398 intron CG33144 - chr2R 10781589 intron CG33144 - chr2R 10781780 intron CG33144 - chr2R_6_10780001 chr2R_10780001 D20-c5 501 chr2R 10827308 10827348 chr2R 10827421 10827461 7 113 0.5 2.5 1.5 2.8 153 chr2R 10827308 exon CG12325 + chr2R 10827384 3` UTR CG12325 + chr2R 10827461 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_7_10825001 chr2R_10825001 D20-c5 502 chr2R 10967226 10967268 chr2R 10967404 10967448 5 180 1.0 0.0 0.5 3.3 222 chr2R 10967226 intergenic not near genes chr2R 10967337 intergenic not near genes chr2R 10967448 intergenic not near genes chr2R_5_10965001 chr2R_10965001 D20-c5 503 chr2R 11019863 11019904 chr2R 11024954 11024995 jockey 9 5091 3.0 2.5 2.8 2.4 5132 chr2R 11019863 intron luna - chr2R 11022429 intron luna - chr2R 11024995 intron luna - chr2R_9_11020001 chr2R_11020001 D20-c5 504 chr2R 11179261 11179280 chr2R 11179372 11179390 5 111 0.0 6.5 3.2 1.2 129 chr2R 11179261 intron shn + chr2R 11179326 intron shn + chr2R 11179390 intron shn + chr2R_5_11175001 chr2R_11175001 D20-c5 505 chr2R 11207821 11207846 chr2R 11208038 11208058 BS 4 216 1.0 3.5 2.2 1.2 237 chr2R 11207821 intron shn + chr2R 11207940 intron shn + chr2R 11208058 intron shn + chr2R_4_11205001 chr2R_11205001 D20-c5 506 chr2R 11253215 11253231 chr2R 11253316 11253329 5 100 5.5 5.0 5.2 0.8 114 chr2R 11253215 intron Cpr47Ea - chr2R 11253272 intron Cpr47Ea - chr2R 11253329 intron Cpr47Ea - chr2R_5_11250001 chr2R_11250001 D20-c5 507 chr2R 11253237 11253261 chr2R 11253313 11253362 6 96 2.5 5.0 3.8 1.2 125 chr2R 11253237 intron Cpr47Ea - chr2R 11253300 intron Cpr47Ea - chr2R 11253362 5` UTR Cpr47Ea - chr2R_6_11250001 chr2R_11250001 D20-c5 508 chr2R 11262170 11262222 chr2R 11262283 11262335 10 113 1.0 2.5 1.8 3.6 165 chr2R 11262170 intergenic Cpr47Ed - chr2R 11262252 intergenic Cpr47Ed - chr2R 11262335 intergenic not near genes chr2R_10_11260001 chr2R_11260001 D20-c5 509 chr2R 11472628 11472673 chr2R 11473850 11473895 pogo 6 1222 4.0 2.5 3.2 1.4 1267 chr2R 11472628 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473895 intergenic not near genes chr2R_6_11470001 chr2R_11470001 D20-c5 510 chr2R 11631377 11631406 chr2R 11631482 11631510 4 105 0.5 2.5 1.5 1.6 133 chr2R 11631377 intron CG9005 - chr2R 11631444 intron CG9005 - chr2R 11631510 intron CG9005 - chr2R_4_11630001 chr2R_11630001 D20-c5 511 chr2R 11672833 11672844 chr2R 11672945 11672956 5 112 3.5 2.5 3.0 1.2 123 chr2R 11672833 intron,exon Roc2 -,Tret1-1 + chr2R 11672894 intron,intron Roc2 -,Tret1-1 + chr2R 11672956 intron,intron Roc2 -,Tret1-1 + chr2R_5_11670001 chr2R_11670001 D20-c5 512 chr2R 11787426 11787457 chr2R 11787534 11787568 10 110 1.0 1.0 1.0 5.0 142 chr2R 11787426 intron ths + chr2R 11787497 intron ths + chr2R 11787568 intron ths + chr2R_10_11785001 chr2R_11785001 D20-c5 513 chr2R 11830783 11830821 chr2R 11830893 11830931 7 109 3.0 6.0 4.5 1.3 148 chr2R 11830783 intron Sobp - chr2R 11830857 intron Sobp - chr2R 11830931 intron Sobp - chr2R_7_11830001 chr2R_11830001 D20-c5 514 chr2R 12016801 12016838 chr2R 12016906 12016946 4 107 0.0 2.5 1.2 1.8 145 chr2R 12016801 intron otk - chr2R 12016874 intron otk - chr2R 12016946 intron otk - chr2R_4_12015001 chr2R_12015001 D20-c5 515 chr2R 12139928 12139939 chr2R 12140038 12140052 4 112 3.5 4.0 3.8 0.8 124 chr2R 12139928 intron skpB - chr2R 12139990 5` UTR skpB - chr2R 12140052 5` UTR skpB - chr2R_4_12135001 chr2R_12135001 D20-c5 516 chr2R 12139946 12139974 chr2R 12140033 12140087 9 109 1.5 3.5 2.5 2.6 141 chr2R 12139946 intron skpB - chr2R 12140016 5` UTR skpB - chr2R 12140087 5` UTR skpB - chr2R_9_12140001 chr2R_12140001 D20-c5 517 chr2R 12355755 12355809 chr2R 12355864 12355918 15 108 1.5 3.5 2.5 4.3 163 chr2R 12355755 intron CG30049 + chr2R 12355836 exon CG30049 + chr2R 12355918 exon CG30049 + chr2R_15_12355001 chr2R_12355001 D20-c5 518 chr2R 12481144 12481163 chr2R 12482973 12482976 roo 5 1826 4.0 8.0 6.0 0.7 1832 chr2R 12481144 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482976 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 D20-c5 519 chr2R 12501671 12501717 chr2R 12503857 12503904 Rt1c 9 2186 0.0 5.0 2.5 2.6 2233 chr2R 12501671 intron fdl - chr2R 12502788 intron fdl - chr2R 12503904 intron fdl - chr2R_9_12500001 chr2R_12500001 D20-c5 520 chr2R 12540457 12540485 chr2R 12540557 12540593 7 106 6.0 3.0 4.5 1.3 136 chr2R 12540457 intron fra + chr2R 12540525 intron fra + chr2R 12540593 intron fra + chr2R_7_12540001 chr2R_12540001 D20-c5 521 chr2R 12552532 12552563 chr2R 12552711 12552745 7 181 3.5 3.0 3.2 1.7 213 chr2R 12552532 intron fra + chr2R 12552638 intron fra + chr2R 12552745 intron fra + chr2R_7_12550001 chr2R_12550001 D20-c5 522 chr2R 12553922 12553949 chr2R 12554022 12554050 6 101 1.5 1.0 1.2 2.7 128 chr2R 12553922 intron fra + chr2R 12553986 intron fra + chr2R 12554050 intron fra + chr2R_6_12550001 chr2R_12550001 D20-c5 523 chr2R 12565541 12565597 chr2R 12565934 12565990 7 393 0.5 4.0 2.2 2.2 449 chr2R 12565541 intergenic not near genes chr2R 12565766 intergenic Cyp301a1 + chr2R 12565990 intergenic Cyp301a1 + chr2R_7_12565001 chr2R_12565001 D20-c5 524 chr2R 12602785 12602835 chr2R 12602894 12602936 4 107 0.0 2.0 1.0 2.0 151 chr2R 12602785 intron Amph + chr2R 12602860 intron Amph + chr2R 12602936 intron Amph + chr2R_4_12600001 chr2R_12600001 D20-c5 525 chr2R 12700792 12700837 chr2R 12700911 12700956 9 117 3.5 2.5 3.0 2.2 164 chr2R 12700792 3` UTR wuc + chr2R 12700874 intergenic wuc + chr2R 12700956 intergenic wuc + chr2R_9_12700001 chr2R_12700001 D20-c5 526 chr2R 12707523 12707546 chr2R 12715913 12715937 roo 6 8391 1.0 1.0 1.0 3.0 8414 chr2R 12707523 intron CG42663 + chr2R 12711730 intron CG42663 + chr2R 12715937 intron CG42663 + chr2R_6_12710001 chr2R_12710001 D20-c5 527 chr2R 12739114 12739154 chr2R 12739215 12739255 9 101 4.0 0.5 2.2 2.8 141 chr2R 12739114 intron CG42663 + chr2R 12739184 intron CG42663 + chr2R 12739255 intron CG42663 + chr2R_9_12735001 chr2R_12735001 D20-c5 528 chr2R 12789288 12789323 chr2R 12797667 12797711 roo 8 8387 2.5 1.0 1.8 2.9 8423 chr2R 12789288 intron,3` UTR sca +,CR45137 - chr2R 12793500 intron,intron sca +,CR45137 - chr2R 12797711 intron,3` UTR sca +,CR45137 - chr2R_8_12790001 chr2R_12790001 D20-c5 529 chr2R 12819434 12819477 chr2R 12824526 12824565 jockey 6 5088 5.5 5.5 5.5 0.9 5131 chr2R 12819434 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824565 intergenic not near genes chr2R_6_12820001 chr2R_12820001 D20-c5 530 chr2R 12845392 12845432 chr2R 12845497 12845534 4 104 1.5 0.0 0.8 2.2 142 chr2R 12845392 intergenic CG17575 - chr2R 12845463 intergenic CG17575 - chr2R 12845534 intergenic CG17575 - chr2R_4_12845001 chr2R_12845001 D20-c5 531 chr2R 12897458 12897478 chr2R 12897572 12897594 4 115 1.0 2.5 1.8 1.4 136 chr2R 12897458 intron vg + chr2R 12897526 intron vg + chr2R 12897594 intron vg + chr2R_4_12895001 chr2R_12895001 D20-c5 532 chr2R 12988256 12988397 chr2R 12988393 12988518 7 133 0.5 0.5 0.5 4.7 262 chr2R 12988256 intergenic not near genes chr2R 12988387 intergenic not near genes chr2R 12988518 intergenic not near genes chr2R_7_12985001 chr2R_12985001 D20-c5 533 chr2R 13089052 13089101 chr2R 13089211 13089260 7 157 3.0 1.5 2.2 2.2 208 chr2R 13089052 intergenic not near genes chr2R 13089156 intergenic not near genes chr2R 13089260 intergenic not near genes chr2R_7_13085001 chr2R_13085001 D20-c5 534 chr2R 13125678 13125700 chr2R 13125786 13125798 6 106 0.5 0.0 0.2 5.0 120 chr2R 13125678 exon CG13325 + chr2R 13125738 3` UTR CG13325 + chr2R 13125798 intergenic CG13325 + chr2R_6_13125001 chr2R_13125001 D20-c5 535 chr2R 13136821 13136866 chr2R 13141644 13141675 Doc 9 4821 3.0 2.0 2.5 2.6 4854 chr2R 13136821 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141675 intron Cap-G + chr2R_9_13135001 chr2R_13135001 D20-c5 536 chr2R 13351638 13351669 chr2R 13352751 13352782 11 1114 31.5 16.0 23.8 0.4 1144 chr2R 13351638 intron CR44206 - chr2R 13352210 intron CR44206 - chr2R 13352782 intron CR44206 - chr2R_11_13350001 chr2R_13350001 D20-c5 537 chr2R 13403900 13403939 chr2R 13404010 13404049 6 107 2.5 0.0 1.2 2.7 149 chr2R 13403900 intergenic not near genes chr2R 13403974 intergenic not near genes chr2R 13404049 intergenic not near genes chr2R_6_13400001 chr2R_13400001 D20-c5 538 chr2R 13431474 13431508 chr2R 13431578 13431612 5 104 3.5 3.0 3.2 1.2 138 chr2R 13431474 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431612 intron CG42321 - chr2R_5_13430001 chr2R_13430001 D20-c5 539 chr2R 13475933 13475979 chr2R 13476044 13476089 4 110 0.5 1.0 0.8 2.2 156 chr2R 13475933 intron arr - chr2R 13476011 intron arr - chr2R 13476089 intron arr - chr2R_4_13475001 chr2R_13475001 D20-c5 540 chr2R 13566241 13566256 chr2R 13566346 13566360 4 105 4.5 0.0 2.2 1.2 119 chr2R 13566241 intergenic not near genes chr2R 13566300 intergenic not near genes chr2R 13566360 intergenic not near genes chr2R_4_13565001 chr2R_13565001 D20-c5 541 chr2R 13580487 13580520 chr2R 13580862 13580895 jockey 10 374 2.5 5.0 3.8 2.1 408 chr2R 13580487 3` UTR CG6191 - chr2R 13580691 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580895 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_10_13580001 chr2R_13580001 D20-c5 542 chr2R 13601511 13601537 chr2R 13601613 13601629 6 100 5.5 3.0 4.2 1.2 118 chr2R 13601511 intergenic CG43058 - chr2R 13601570 intergenic CG43058 - chr2R 13601629 intergenic not near genes chr2R_6_13600001 chr2R_13600001 D20-c5 543 chr2R 13709823 13709853 chr2R 13709940 13709971 5 118 2.0 2.5 2.2 1.6 148 chr2R 13709823 intron fas + chr2R 13709897 intron fas + chr2R 13709971 intron fas + chr2R_5_13705001 chr2R_13705001 D20-c5 544 chr2R 13721180 13721223 chr2R 13721287 13721330 9 107 3.0 5.5 4.2 1.7 150 chr2R 13721180 intron fas + chr2R 13721255 intron fas + chr2R 13721330 intron fas + chr2R_9_13720001 chr2R_13720001 D20-c5 545 chr2R 13728111 13728164 chr2R 13735793 13735846 opus 6 7678 1.5 0.0 0.8 3.3 7735 chr2R 13728111 intron fas + chr2R 13731978 intron fas + chr2R 13735846 intron fas + chr2R_6_13730001 chr2R_13730001 D20-c5 546 chr2R 13801455 13801505 chr2R 13801558 13801609 4 104 1.5 2.0 1.8 1.4 154 chr2R 13801455 intron Cpr50Cb + chr2R 13801532 intron Cpr50Cb + chr2R 13801609 intron Cpr50Cb + chr2R_4_13800001 chr2R_13800001 D20-c5 547 chr2R 13868884 13868918 chr2R 13868988 13869022 7 103 0.0 1.5 0.8 3.9 138 chr2R 13868884 intron shot - chr2R 13868953 intron shot - chr2R 13869022 intron shot - chr2R_7_13865001 chr2R_13865001 D20-c5 548 chr2R 13905591 13905622 chr2R 13907598 13907628 Rt1a 9 2007 3.5 8.0 5.8 1.3 2037 chr2R 13905591 intron shot - chr2R 13906610 intron shot - chr2R 13907628 intron shot - chr2R_9_13905001 chr2R_13905001 D20-c5 549 chr2R 14294805 14294852 chr2R 14294910 14294957 10 105 1.0 3.5 2.2 3.1 152 chr2R 14294805 intron Ih + chr2R 14294881 intron Ih + chr2R 14294957 intron Ih + chr2R_10_14290001 chr2R_14290001 D20-c5 550 chr2R 14394209 14394255 chr2R 14399023 14399035 Doc 5 4807 3.0 2.0 2.5 1.4 4826 chr2R 14394209 intergenic not near genes chr2R 14396622 intergenic not near genes chr2R 14399035 intergenic not near genes chr2R_5_14395001 chr2R_14395001 D20-c5 551 chr2R 14467287 14467309 chr2R 14476470 14476492 roo 5 9183 2.0 3.5 2.8 1.3 9205 chr2R 14467287 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476492 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 D20-c5 552 chr2R 14497367 14497414 chr2R 14498555 14498604 1360 4 1188 0.0 1.5 0.8 2.2 1237 chr2R 14497367 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498604 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 D20-c5 553 chr2R 14514460 14514493 chr2R 14514581 14514627 4 124 1.5 2.0 1.8 1.4 167 chr2R 14514460 intron,intron Cpr51A -,CG30197 + chr2R 14514544 intron,intron Cpr51A -,CG30197 + chr2R 14514627 intron,intron Cpr51A -,CG30197 + chr2R_4_14510001 chr2R_14510001 D20-c5 554 chr2R 14524832 14524848 chr2R 14524952 14524960 5 119 6.5 1.0 3.8 1.0 128 chr2R 14524832 intergenic not near genes chr2R 14524896 intergenic not near genes chr2R 14524960 intergenic not near genes chr2R_5_14520001 chr2R_14520001 D20-c5 555 chr2R 14530722 14530775 chr2R 14530829 14530882 8 101 1.0 1.5 1.2 3.6 160 chr2R 14530722 intron ttv + chr2R 14530802 intron ttv + chr2R 14530882 intron ttv + chr2R_8_14530001 chr2R_14530001 D20-c5 556 chr2R 14780411 14780445 chr2R 14780572 14780603 6 160 2.5 0.5 1.5 2.4 192 chr2R 14780411 intron kn - chr2R 14780507 intron kn - chr2R 14780603 intron kn - chr2R_6_14780001 chr2R_14780001 D20-c5 557 chr2R 14799868 14799894 chr2R 14799969 14799995 4 100 0.0 1.0 0.5 2.7 127 chr2R 14799868 intron kn - chr2R 14799932 intron kn - chr2R 14799995 intron kn - chr2R_4_14795001 chr2R_14795001 D20-c5 558 chr2R 14917833 14917882 chr2R 14917943 14917992 5 109 1.5 1.0 1.2 2.3 159 chr2R 14917833 intron CG10249 - chr2R 14917912 intron CG10249 - chr2R 14917992 intron CG10249 - chr2R_5_14915001 chr2R_14915001 D20-c5 559 chr2R 14922127 14922158 chr2R 14922228 14922259 6 101 1.5 1.5 1.5 2.4 132 chr2R 14922127 intron CG10249 - chr2R 14922193 intron CG10249 - chr2R 14922259 intron CG10249 - chr2R_6_14920001 chr2R_14920001 D20-c5 560 chr2R 14954722 14954778 chr2R 14954823 14954879 5 101 0.5 1.0 0.8 2.8 157 chr2R 14954722 intron aPKC - chr2R 14954800 intron aPKC - chr2R 14954879 intron aPKC - chr2R_5_14950001 chr2R_14950001 D20-c5 561 chr2R 15004714 15004760 chr2R 15005068 15005085 jockey 5 348 2.0 4.5 3.2 1.2 371 chr2R 15004714 intergenic not near genes chr2R 15004900 intergenic not near genes chr2R 15005085 intergenic not near genes chr2R_5_15000001 chr2R_15000001 D20-c5 562 chr2R 15051072 15051110 chr2R 15051179 15051217 7 107 3.0 4.0 3.5 1.6 145 chr2R 15051072 intergenic not near genes chr2R 15051144 intergenic not near genes chr2R 15051217 intergenic not near genes chr2R_7_15050001 chr2R_15050001 D20-c5 563 chr2R 15110645 15110692 chr2R 15110751 15110798 6 103 0.5 1.0 0.8 3.3 153 chr2R 15110645 intergenic not near genes chr2R 15110722 intergenic not near genes chr2R 15110798 intergenic not near genes chr2R_6_15110001 chr2R_15110001 D20-c5 564 chr2R 15119296 15119343 chr2R 15127802 15127847 Tirant 7 8505 2.0 0.5 1.2 3.2 8551 chr2R 15119296 intron chn + chr2R 15123572 intron chn + chr2R 15127847 intron chn + chr2R_7_15120001 chr2R_15120001 D20-c5 565 chr2R 15330186 15330238 chr2R 15330344 15330395 5 158 2.0 3.0 2.5 1.4 209 chr2R 15330186 intergenic CR44371 - chr2R 15330290 intergenic CR44371 - chr2R 15330395 3` UTR CR44371 - chr2R_5_15330001 chr2R_15330001 D20-c5 566 chr2R 15355002 15355051 chr2R 15355111 15355162 13 110 4.0 4.0 4.0 2.6 160 chr2R 15355002 intron unc-5 + chr2R 15355082 intron unc-5 + chr2R 15355162 intron unc-5 + chr2R_13_15355001 chr2R_15355001 D20-c5 567 chr2R 15362624 15362673 chr2R 15362731 15362780 9 106 1.5 1.5 1.5 3.6 156 chr2R 15362624 intron unc-5 + chr2R 15362702 intron unc-5 + chr2R 15362780 intron unc-5 + chr2R_9_15360001 chr2R_15360001 D20-c5 568 chr2R 15374792 15375064 chr2R 15374900 15375199 7 131 5.0 1.5 3.2 1.7 407 chr2R 15374792 intergenic not near genes chr2R 15374996 intergenic not near genes chr2R 15375199 intergenic not near genes chr2R_7_15370001 chr2R_15370001 D20-c5 569 chr2R 15404104 15404123 chr2R 15404227 15404240 4 122 2.5 3.0 2.8 1.1 136 chr2R 15404104 intron CG43729 + chr2R 15404172 intron CG43729 + chr2R 15404240 intron CG43729 + chr2R_4_15400001 chr2R_15400001 D20-c5 570 chr2R 15625604 15625638 chr2R 15625780 15625814 6 176 5.5 4.5 5.0 1.0 210 chr2R 15625604 intron CG42524 + chr2R 15625709 intron CG42524 + chr2R 15625814 intron CG42524 + chr2R_6_15625001 chr2R_15625001 D20-c5 571 chr2R 15645665 15645681 chr2R 15645774 15645801 4 114 2.0 0.0 1.0 2.0 136 chr2R 15645665 intron CG42524 + chr2R 15645733 intron CG42524 + chr2R 15645801 intron CG42524 + chr2R_4_15645001 chr2R_15645001 D20-c5 572 chr2R 15833509 15833539 chr2R 15833620 15833651 5 111 5.5 3.0 4.2 1.0 142 chr2R 15833509 intron,intron tun +,Poxn - chr2R 15833580 intron,intron tun +,Poxn - chr2R 15833651 intron,intron tun +,Poxn - chr2R_5_15830001 chr2R_15830001 D20-c5 573 chr2R 15930360 15930361 chr2R 15930462 15930463 4 102 15.0 0.5 7.8 0.5 103 chr2R 15930360 intron bdg - chr2R 15930412 intron bdg - chr2R 15930463 intron bdg - chr2R_4_15930001 chr2R_15930001 D20-c5 574 chr2R 16037204 16037228 chr2R 16037306 16037330 7 102 7.0 8.0 7.5 0.8 126 chr2R 16037204 intron SP2353 + chr2R 16037267 intron SP2353 + chr2R 16037330 intron SP2353 + chr2R_7_16035001 chr2R_16035001 D20-c5 575 chr2R 16054925 16054957 chr2R 16055033 16055064 13 107 5.5 4.5 5.0 2.2 139 chr2R 16054925 intron CG8405 + chr2R 16054994 intron CG8405 + chr2R 16055064 intron CG8405 + chr2R_13_16050001 chr2R_16050001 D20-c5 576 chr2R 16119867 16119919 chr2R 16120014 16120068 7 148 4.0 2.5 3.2 1.7 201 chr2R 16119867 5` UTR Jhe + chr2R 16119968 intron Jhe + chr2R 16120068 intron Jhe + chr2R_7_16115001 chr2R_16115001 D20-c5 577 chr2R 16220684 16220735 chr2R 16220789 16220840 9 105 3.0 2.5 2.8 2.4 156 chr2R 16220684 intron mrj - chr2R 16220762 intron mrj - chr2R 16220840 intron mrj - chr2R_9_16220001 chr2R_16220001 D20-c5 578 chr2R 16460742 16460763 chr2R 16460847 16460870 6 103 1.5 2.0 1.8 2.1 128 chr2R 16460742 intergenic not near genes chr2R 16460806 intergenic not near genes chr2R 16460870 intergenic not near genes chr2R_6_16460001 chr2R_16460001 D20-c5 579 chr2R 16482863 16482901 chr2R 16483131 16483170 5 269 3.5 3.0 3.2 1.2 307 chr2R 16482863 intergenic not near genes chr2R 16483016 intergenic not near genes chr2R 16483170 intergenic not near genes chr2R_5_16480001 chr2R_16480001 D20-c5 580 chr2R 16518019 16518067 chr2R 16518120 16518168 6 100 1.5 0.5 1.0 3.0 149 chr2R 16518019 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518168 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 D20-c5 581 chr2R 16539621 16539661 chr2R 16544855 16544895 copia 4 5234 1.5 2.5 2.0 1.3 5274 chr2R 16539621 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544895 intergenic not near genes chr2R_4_16540001 chr2R_16540001 D20-c5 582 chr2R 16599266 16599316 chr2R 16599370 16599405 11 102 1.0 1.0 1.0 5.5 139 chr2R 16599266 intron,exon CG8303 -,CG5089 + chr2R 16599336 intron,exon CG8303 -,CG5089 + chr2R 16599405 intron,exon CG8303 -,CG5089 + chr2R_11_16595001 chr2R_16595001 D20-c5 583 chr2R 16692855 16692880 chr2R 20298000 20298023 5 3605145 20.5 4.5 12.5 0.4 3605168 chr2R 16692855 intron,exon CG30463 -,CG5210 + chr2R 18495439 intron CG30116 - chr2R 20298023 intergenic not near genes chr2R_5_18495001 chr2R_18495001 D20-c5 584 chr2R 17132845 17132853 chr2R 17132970 17132978 4 125 0.5 0.5 0.5 2.7 133 chr2R 17132845 intergenic not near genes chr2R 17132912 intergenic not near genes chr2R 17132978 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 D20-c5 585 chr2R 17147230 17147264 chr2R 17152286 17152320 jockey 4 5052 4.0 2.5 3.2 1.0 5090 chr2R 17147230 intergenic not near genes chr2R 17149775 intergenic not near genes chr2R 17152320 intergenic not near genes chr2R_4_17145001 chr2R_17145001 D20-c5 586 chr2R 17610851 17610889 chr2R 17611095 17611135 6 245 1.0 2.0 1.5 2.4 284 chr2R 17610851 intron CG10936 - chr2R 17610993 intron CG10936 - chr2R 17611135 intron CG10936 - chr2R_6_17610001 chr2R_17610001 D20-c5 587 chr2R 17918148 17918172 chr2R 17918250 17918274 4 101 0.5 0.0 0.2 3.3 126 chr2R 17918148 intron Elk + chr2R 17918211 intron Elk + chr2R 17918274 intron Elk + chr2R_4_17915001 chr2R_17915001 D20-c5 588 chr2R 17966124 17966176 chr2R 17966230 17966277 14 104 2.5 1.0 1.8 5.0 153 chr2R 17966124 intergenic not near genes chr2R 17966200 intergenic not near genes chr2R 17966277 intergenic not near genes chr2R_14_17965001 chr2R_17965001 D20-c5 589 chr2R 17971102 17971129 chr2R 17971206 17971233 13 103 1.5 6.0 3.8 2.7 131 chr2R 17971102 intergenic not near genes chr2R 17971168 intergenic not near genes chr2R 17971233 intergenic not near genes chr2R_13_17970001 chr2R_17970001 D20-c5 590 chr2R 17974511 17974564 chr2R 17974664 17974716 15 152 3.5 6.0 4.8 2.6 205 chr2R 17974511 intergenic not near genes chr2R 17974614 intergenic not near genes chr2R 17974716 intergenic dpr13 - chr2R_15_17970001 chr2R_17970001 D20-c5 591 chr2R 17995323 17995373 chr2R 17995426 17995476 4 103 0.5 2.0 1.2 1.8 153 chr2R 17995323 intron dpr13 - chr2R 17995400 intron dpr13 - chr2R 17995476 intron dpr13 - chr2R_4_17995001 chr2R_17995001 D20-c5 592 chr2R 18045667 18045686 chr2R 18046040 18046063 jockey 6 374 0.5 2.5 1.5 2.4 396 chr2R 18045667 intergenic not near genes chr2R 18045865 intergenic not near genes chr2R 18046063 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 D20-c5 593 chr2R 18124324 18124373 chr2R 18124423 18124468 7 100 0.5 1.0 0.8 3.9 144 chr2R 18124324 intron stau - chr2R 18124396 intron stau - chr2R 18124468 intron stau - chr2R_7_18120001 chr2R_18120001 D20-c5 594 chr2R 18207294 18207347 chr2R 18207403 18207454 17 110 1.5 1.0 1.2 7.7 160 chr2R 18207294 intergenic CG30114 + chr2R 18207374 intergenic CG30114 + chr2R 18207454 intergenic CG30114 + chr2R_17_18205001 chr2R_18205001 D20-c5 595 chr2R 18260863 18260868 chr2R 18261033 18261036 4 170 1.5 0.0 0.8 2.2 173 chr2R 18260863 intergenic not near genes chr2R 18260950 intergenic not near genes chr2R 18261036 intergenic not near genes chr2R_4_18260001 chr2R_18260001 D20-c5 596 chr2R 18289402 18289447 chr2R 18289529 18289574 11 127 3.5 2.5 3.0 2.8 172 chr2R 18289402 intron,intron sbb -,CG14502 + chr2R 18289488 intron,intron sbb -,CG14502 + chr2R 18289574 exon,intron sbb -,CG14502 + chr2R_11_18285001 chr2R_18285001 D20-c5 597 chr2R 18358389 18358415 chr2R 18372625 18372652 roo 4 14237 1.5 2.5 2.0 1.3 14263 chr2R 18358389 intergenic not near genes chr2R 18365520 intergenic not near genes chr2R 18372652 intergenic not near genes chr2R_4_18365001 chr2R_18365001 D20-c5 598 chr2R 18477747 18477762 chr2R 18477823 18477869 6 98 0.5 5.5 3.0 1.5 122 chr2R 18477747 intron CG30116 - chr2R 18477808 intron CG30116 - chr2R 18477869 intron CG30116 - chr2R_6_18475001 chr2R_18475001 D20-c5 599 chr2R 18527772 18527787 chr2R 18527902 18527932 5 142 4.0 0.5 2.2 1.6 160 chr2R 18527772 exon CG10924 + chr2R 18527852 intron CG10924 + chr2R 18527932 intron CG10924 + chr2R_5_18525001 chr2R_18525001 D20-c5 600 chr2R 18528170 18528214 chr2R 18528280 18528320 7 108 2.5 4.5 3.5 1.6 150 chr2R 18528170 intron CG10924 + chr2R 18528245 intron CG10924 + chr2R 18528320 intron CG10924 + chr2R_7_18525001 chr2R_18525001 D20-c5 601 chr2R 18575776 18575830 chr2R 18581989 18582043 3S18 13 6205 4.5 4.5 4.5 2.4 6267 chr2R 18575776 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582043 intron GEFmeso - chr2R_13_18575001 chr2R_18575001 D20-c5 602 chr2R 18590845 18590893 chr2R 18600021 18600070 roo 8 9176 4.5 3.0 3.8 1.7 9225 chr2R 18590845 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600070 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 D20-c5 603 chr2R 18646387 18646433 chr2R 18646557 18646603 6 163 2.5 3.0 2.8 1.6 216 chr2R 18646387 intron SP2637 - chr2R 18646495 intron SP2637 - chr2R 18646603 intron SP2637 - chr2R_6_18645001 chr2R_18645001 D20-c5 604 chr2R 18769733 18769738 chr2R 18769963 18769970 4 231 0.0 6.0 3.0 1.0 237 chr2R 18769733 intron Mctp + chr2R 18769852 intron Mctp + chr2R 18769970 intron Mctp + chr2R_4_18765001 chr2R_18765001 D20-c5 605 chr2R 18904425 18904456 chr2R 18904616 18904649 10 192 4.5 4.0 4.2 1.9 224 chr2R 18904425 intron sano + chr2R 18904537 intron sano + chr2R 18904649 intron sano + chr2R_10_18900001 chr2R_18900001 D20-c5 606 chr2R 18964903 18964929 chr2R 18965004 18965030 4 101 2.0 1.0 1.5 1.6 127 chr2R 18964903 intergenic not near genes chr2R 18964966 intergenic not near genes chr2R 18965030 intergenic not near genes chr2R_4_18960001 chr2R_18960001 D20-c5 607 chr2R 19183351 19183369 chr2R 19183452 19183470 10 100 0.5 3.5 2.0 3.3 119 chr2R 19183351 intron hppy + chr2R 19183410 intron hppy + chr2R 19183470 intron hppy + chr2R_10_19180001 chr2R_19180001 D20-c5 608 chr2R 19234100 19234140 chr2R 19235839 19235879 8 1739 3.5 3.0 3.2 1.9 1779 chr2R 19234100 intron cora + chr2R 19234990 intron cora + chr2R 19235879 exon cora + chr2R_8_19230001 chr2R_19230001 D20-c5 609 chr2R 19388477 19388526 chr2R 19388595 19388644 17 118 3.0 8.0 5.5 2.6 167 chr2R 19388477 intron CG10081 + chr2R 19388560 exon CG10081 + chr2R 19388644 exon CG10081 + chr2R_17_19385001 chr2R_19385001 D20-c5 610 chr2R 19498717 19498758 chr2R 19498814 19498864 15 104 2.0 1.5 1.8 5.4 147 chr2R 19498717 intron CG15120 + chr2R 19498790 intron CG15120 + chr2R 19498864 intron CG15120 + chr2R_15_19495001 chr2R_19495001 D20-c5 611 chr2R 19535088 19535129 chr2R 19535314 19535371 7 239 3.0 1.0 2.0 2.3 283 chr2R 19535088 intron sm - chr2R 19535230 intron sm - chr2R 19535371 intron sm - chr2R_7_19535001 chr2R_19535001 D20-c5 612 chr2R 19539119 19539167 chr2R 19539235 19539283 16 116 3.5 1.5 2.5 4.6 164 chr2R 19539119 intron sm - chr2R 19539201 intron sm - chr2R 19539283 intron sm - chr2R_16_19535001 chr2R_19535001 D20-c5 613 chr2R 19544798 19544854 chr2R 19544900 19544959 12 103 1.0 1.0 1.0 6.0 161 chr2R 19544798 intron sm - chr2R 19544878 intron sm - chr2R 19544959 intron sm - chr2R_12_19540001 chr2R_19540001 D20-c5 614 chr2R 19776570 19776626 chr2R 19779918 19779967 jockey 9 3347 1.5 2.5 2.0 3.0 3397 chr2R 19776570 intergenic not near genes chr2R 19778268 intergenic not near genes chr2R 19779967 intergenic not near genes chr2R_9_19775001 chr2R_19775001 D20-c5 615 chr2R 19794856 19794899 chr2R 19794984 19795029 9 128 3.0 6.0 4.5 1.6 173 chr2R 19794856 intergenic not near genes chr2R 19794942 intergenic not near genes chr2R 19795029 intergenic not near genes chr2R_9_19790001 chr2R_19790001 D20-c5 616 chr2R 19807649 19807694 chr2R 19807756 19807801 5 107 1.5 2.0 1.8 1.8 152 chr2R 19807649 intergenic not near genes chr2R 19807725 intergenic not near genes chr2R 19807801 intergenic not near genes chr2R_5_19805001 chr2R_19805001 D20-c5 617 chr2R 19914827 19914875 chr2R 19922261 19922303 mdg1 7 7435 2.5 3.0 2.8 1.8 7476 chr2R 19914827 intergenic not near genes chr2R 19918565 intergenic not near genes chr2R 19922303 intergenic not near genes chr2R_7_19915001 chr2R_19915001 D20-c5 618 chr2R 19922592 19922622 chr2R 19922686 19922724 13 101 4.0 3.0 3.5 2.9 132 chr2R 19922592 intergenic not near genes chr2R 19922658 intergenic not near genes chr2R 19922724 intergenic not near genes chr2R_13_19920001 chr2R_19920001 D20-c5 619 chr2R 19940542 19940596 chr2R 19940977 19941021 10 433 2.5 0.5 1.5 4.0 479 chr2R 19940542 3` UTR CR43421 - chr2R 19940782 intergenic CR43421 - chr2R 19941021 intergenic CR43421 - chr2R_10_19940001 chr2R_19940001 D20-c5 620 chr2R 19957416 19957457 chr2R 19962643 19962684 copia 8 5226 2.0 3.0 2.5 2.3 5268 chr2R 19957416 intergenic CG44623 + chr2R 19960050 intergenic not near genes chr2R 19962684 intergenic not near genes chr2R_8_19960001 chr2R_19960001 D20-c5 621 chr2R 20020368 20020423 chr2R 20020605 20020660 11 234 1.0 1.5 1.2 5.0 292 chr2R 20020368 intergenic not near genes chr2R 20020514 intergenic not near genes chr2R 20020660 intergenic not near genes chr2R_11_20020001 chr2R_20020001 D20-c5 622 chr2R 20069217 20069271 chr2R 20071872 20071926 opus 6 2650 2.0 3.5 2.8 1.6 2709 chr2R 20069217 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071926 intergenic not near genes chr2R_6_20070001 chr2R_20070001 D20-c5 623 chr2R 20174624 20174674 chr2R 20174723 20174774 9 101 1.0 2.0 1.5 3.6 150 chr2R 20174624 intergenic not near genes chr2R 20174699 intergenic not near genes chr2R 20174774 intergenic not near genes chr2R_9_20170001 chr2R_20170001 D20-c5 624 chr2R 20432455 20432487 chr2R 20432575 20432608 8 118 2.5 4.0 3.2 1.9 153 chr2R 20432455 intron CG12484 + chr2R 20432532 intron CG12484 + chr2R 20432608 intron CG12484 + chr2R_8_20430001 chr2R_20430001 D20-c5 625 chr2R 20739423 20739468 chr2R 20744213 20744261 F-element 11 4788 4.0 5.0 4.5 2.0 4838 chr2R 20739423 intron dpr + chr2R 20741842 intron dpr + chr2R 20744261 intron dpr + chr2R_11_20740001 chr2R_20740001 D20-c5 626 chr2R 20757447 20757455 chr2R 20757549 20757556 4 100 4.0 6.5 5.2 0.6 109 chr2R 20757447 intergenic not near genes chr2R 20757502 intergenic not near genes chr2R 20757556 intergenic not near genes chr2R_4_20755001 chr2R_20755001 D20-c5 627 chr2R 20962883 20962926 chr2R 20963006 20963049 6 120 1.5 1.5 1.5 2.4 166 chr2R 20962883 intergenic not near genes chr2R 20962966 intergenic not near genes chr2R 20963049 intergenic not near genes chr2R_6_20960001 chr2R_20960001 D20-c5 628 chr2R 20970369 20970417 chr2R 20970509 20970546 7 138 3.0 3.0 3.0 1.8 177 chr2R 20970369 intergenic not near genes chr2R 20970458 intergenic not near genes chr2R 20970546 intergenic not near genes chr2R_7_20970001 chr2R_20970001 D20-c5 629 chr2R 21040848 21040879 chr2R 21040949 21040971 6 99 1.0 2.5 1.8 2.1 123 chr2R 21040848 intergenic not near genes chr2R 21040910 intergenic not near genes chr2R 21040971 intergenic not near genes chr2R_6_21040001 chr2R_21040001 D20-c5 630 chr2R 21088202 21088217 chr2R 21088316 21088331 4 114 1.5 3.0 2.2 1.2 129 chr2R 21088202 intron Treh + chr2R 21088266 intron Treh + chr2R 21088331 intron Treh + chr2R_4_21085001 chr2R_21085001 D20-c5 631 chr2R 21103521 21103548 chr2R 21103626 21103653 4 105 0.5 0.0 0.2 3.3 132 chr2R 21103521 intron ktub + chr2R 21103587 intron ktub + chr2R 21103653 intron ktub + chr2R_4_21100001 chr2R_21100001 D20-c5 632 chr2R 21151104 21151137 chr2R 21153761 21153795 opus 4 2658 4.0 3.5 3.8 0.8 2691 chr2R 21151104 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153795 intron CG30389 - chr2R_4_21150001 chr2R_21150001 D20-c5 633 chr2R 21188201 21188250 chr2R 21188307 21188356 9 106 1.5 0.5 1.0 4.5 155 chr2R 21188201 exon tud + chr2R 21188278 intron tud + chr2R 21188356 intron tud + chr2R_9_21185001 chr2R_21185001 D20-c5 634 chr2R 21247489 21247521 chr2R 21247996 21248028 6 507 3.0 2.5 2.8 1.6 539 chr2R 21247489 intron ASPP - chr2R 21247758 intron ASPP - chr2R 21248028 intron ASPP - chr2R_6_21245001 chr2R_21245001 D20-c5 635 chr2R 21322925 21322962 chr2R 21323034 21323071 8 108 3.5 1.5 2.5 2.3 146 chr2R 21322925 5` UTR CG30394 - chr2R 21322998 5` UTR CG30394 - chr2R 21323071 intron CG30394 - chr2R_8_21320001 chr2R_21320001 D20-c5 636 chr2R 21421322 21421332 chr2R 21421426 21421436 4 104 5.0 3.0 4.0 0.8 114 chr2R 21421322 intron Sdc - chr2R 21421379 intron Sdc - chr2R 21421436 intron Sdc - chr2R_4_21420001 chr2R_21420001 D20-c5 637 chr2R 21546798 21546810 chr2R 21546895 21546916 4 104 2.0 3.0 2.5 1.1 118 chr2R 21546798 intron Egfr + chr2R 21546857 intron Egfr + chr2R 21546916 intron Egfr + chr2R_4_21545001 chr2R_21545001 D20-c5 638 chr2R 21592823 21592850 chr2R 21592931 21592958 4 106 2.5 7.5 5.0 0.7 135 chr2R 21592823 intergenic not near genes chr2R 21592890 intergenic not near genes chr2R 21592958 intergenic not near genes chr2R_4_21590001 chr2R_21590001 D20-c5 639 chr2R 21593555 21593609 chr2R 21594287 21594343 15 733 3.0 4.0 3.5 3.3 788 chr2R 21593555 intergenic not near genes chr2R 21593949 intergenic not near genes chr2R 21594343 intergenic not near genes chr2R_15_21590001 chr2R_21590001 D20-c5 640 chr2R 21660382 21660415 chr2R 21660666 21660694 7 283 1.5 2.0 1.8 2.5 312 chr2R 21660382 intergenic Rae1 - chr2R 21660538 intergenic pirk - chr2R 21660694 intergenic pirk - chr2R_7_21660001 chr2R_21660001 D20-c5 641 chr2R 21700138 21700178 chr2R 21700249 21700289 8 111 1.5 3.5 2.5 2.3 151 chr2R 21700138 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700289 intron HmgZ - chr2R_8_21700001 chr2R_21700001 D20-c5 642 chr2R 21738285 21738297 chr2R 21747448 21747482 roo 4 9176 2.5 4.5 3.5 0.9 9197 chr2R 21738285 intergenic not near genes chr2R 21742884 intergenic not near genes chr2R 21747482 intergenic not near genes chr2R_4_21740001 chr2R_21740001 D20-c5 643 chr2R 21753065 21753115 chr2R 21753575 21753624 roo 6 510 1.5 3.5 2.5 1.7 559 chr2R 21753065 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753624 intergenic not near genes chr2R_6_21750001 chr2R_21750001 D20-c5 644 chr2R 21809526 21809548 chr2R 21817790 21817811 roo 4 8264 1.0 0.5 0.8 2.2 8285 chr2R 21809526 intergenic not near genes chr2R 21813668 intergenic not near genes chr2R 21817811 intergenic not near genes chr2R_4_21810001 chr2R_21810001 D20-c5 645 chr2R 21906246 21906286 chr2R 21906371 21906412 4 124 3.0 1.0 2.0 1.3 166 chr2R 21906246 intron Fili + chr2R 21906329 intron Fili + chr2R 21906412 intron Fili + chr2R_4_21905001 chr2R_21905001 D20-c5 646 chr2R 21932225 21932280 chr2R 21932328 21932383 10 103 2.0 2.5 2.2 3.1 158 chr2R 21932225 intron Fili + chr2R 21932304 intron Fili + chr2R 21932383 intron Fili + chr2R_10_21930001 chr2R_21930001 D20-c5 647 chr2R 21937363 21937392 chr2R 21937489 21937514 11 122 23.5 26.5 25.0 0.4 151 chr2R 21937363 intron Fili + chr2R 21937438 intron Fili + chr2R 21937514 intron Fili + chr2R_11_21935001 chr2R_21935001 D20-c5 648 chr2R 21985552 21985564 chr2R 21985656 21985669 4 105 0.5 3.0 1.8 1.4 117 chr2R 21985552 intergenic CG30401 - chr2R 21985610 intergenic CG30401 - chr2R 21985669 3` UTR CG30401 - chr2R_4_21985001 chr2R_21985001 D20-c5 649 chr2R 22003065 22003106 chr2R 22003176 22003214 5 110 4.0 1.0 2.5 1.4 149 chr2R 22003065 intron CG34370 - chr2R 22003140 intron CG34370 - chr2R 22003214 intron CG34370 - chr2R_5_22000001 chr2R_22000001 D20-c5 650 chr2R 22004274 22004317 chr2R 22004393 22004436 4 115 2.0 1.5 1.8 1.4 162 chr2R 22004274 intron CG34370 - chr2R 22004355 intron CG34370 - chr2R 22004436 intron CG34370 - chr2R_4_22000001 chr2R_22000001 D20-c5 651 chr2R 22033805 22033859 chr2R 22033914 22033954 6 103 1.5 2.0 1.8 2.1 149 chr2R 22033805 intron CG34370 - chr2R 22033880 intron CG34370 - chr2R 22033954 intron CG34370 - chr2R_6_22030001 chr2R_22030001 D20-c5 652 chr2R 22040135 22040176 chr2R 22040241 22040249 5 98 2.5 3.0 2.8 1.3 114 chr2R 22040135 intergenic not near genes chr2R 22040192 intergenic not near genes chr2R 22040249 intergenic not near genes chr2R_5_22040001 chr2R_22040001 D20-c5 653 chr2R 22047966 22048022 chr2R 22048117 22048175 17 152 4.0 4.5 4.2 3.3 209 chr2R 22047966 intergenic not near genes chr2R 22048070 intergenic not near genes chr2R 22048175 intergenic not near genes chr2R_17_22045001 chr2R_22045001 D20-c5 654 chr2R 22182890 22182921 chr2R 22182998 22183029 4 108 2.0 0.5 1.2 1.8 139 chr2R 22182890 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182960 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183029 intergenic MED16 +,CG11170 -,CG11275 + chr2R_4_22180001 chr2R_22180001 D20-c5 655 chr2R 22248825 22248875 chr2R 22248919 22248976 8 101 4.0 2.0 3.0 2.0 151 chr2R 22248825 intron dve + chr2R 22248900 intron dve + chr2R 22248976 intron dve + chr2R_8_22245001 chr2R_22245001 D20-c5 656 chr2R 22377785 22377835 chr2R 22377895 22377943 7 103 1.5 0.5 1.0 3.5 158 chr2R 22377785 3` UTR Rtf1 + chr2R 22377864 3` UTR Rtf1 + chr2R 22377943 3` UTR Rtf1 + chr2R_7_22375001 chr2R_22375001 D20-c5 657 chr2R 22460362 22460406 chr2R 22460466 22460509 6 104 2.0 2.5 2.2 1.9 147 chr2R 22460362 intron CG10384 + chr2R 22460436 intron CG10384 + chr2R 22460509 intron CG10384 + chr2R_6_22460001 chr2R_22460001 D20-c5 658 chr2R 22477553 22477599 chr2R 22477683 22477729 13 129 2.0 2.5 2.2 4.1 176 chr2R 22477553 intergenic CG45063 - chr2R 22477641 intergenic CG45063 - chr2R 22477729 intergenic CG45063 - chr2R_13_22475001 chr2R_22475001 D20-c5 659 chr2R 22525724 22525734 chr2R 22529304 22529314 jockey 5 3580 5.0 2.0 3.5 1.1 3590 chr2R 22525724 intron px - chr2R 22527519 intron px - chr2R 22529314 intron px - chr2R_5_22525001 chr2R_22525001 D20-c5 660 chr2R 22525738 22525769 chr2R 22529302 22529349 jockey 4 3576 2.5 1.0 1.8 1.4 3611 chr2R 22525738 intron px - chr2R 22527544 intron px - chr2R 22529349 intron px - chr2R_4_22525001 chr2R_22525001 D20-c5 661 chr2R 22575639 22575685 chr2R 22575743 22575788 6 104 1.5 3.5 2.5 1.7 149 chr2R 22575639 intron dnr1 - chr2R 22575714 intron dnr1 - chr2R 22575788 intron dnr1 - chr2R_6_22575001 chr2R_22575001 D20-c5 662 chr2R 22596212 22596235 chr2R 22596316 22596332 4 102 2.0 1.0 1.5 1.6 120 chr2R 22596212 3` UTR CG3927 + chr2R 22596272 3` UTR CG3927 + chr2R 22596332 3` UTR CG3927 + chr2R_4_22595001 chr2R_22595001 D20-c5 663 chr2R 22624780 22624835 chr2R 22627574 22627628 9 2794 8.0 23.0 15.5 0.5 2848 chr2R 22624780 intron CG33143 + chr2R 22626204 intron CG33143 + chr2R 22627628 intron CG33143 + chr2R_9_22625001 chr2R_22625001 D20-c5 664 chr2R 22756633 22756650 chr2R 22756736 22756753 6 103 4.0 2.0 3.0 1.5 120 chr2R 22756633 intron,intron CG42260 -,CR30267 + chr2R 22756693 intron,intron CG42260 -,CR30267 + chr2R 22756753 intron,intron CG42260 -,CR30267 + chr2R_6_22755001 chr2R_22755001 D20-c5 665 chr2R 22774946 22774983 chr2R 22775390 22775417 jockey 5 441 1.0 2.0 1.5 2.0 471 chr2R 22774946 intron CG42260 - chr2R 22775182 intron CG42260 - chr2R 22775417 intron CG42260 - chr2R_5_22775001 chr2R_22775001 D20-c5 666 chr2R 22907379 22907428 chr2R 22907496 22907538 13 116 2.0 4.0 3.0 3.2 159 chr2R 22907379 intron nahoda + chr2R 22907458 intron nahoda + chr2R 22907538 intron nahoda + chr2R_13_22905001 chr2R_22905001 D20-c5 667 chr2R 22945048 22945083 chr2R 22945187 22945222 6 139 1.0 3.5 2.2 1.9 174 chr2R 22945048 exon CG42694 + chr2R 22945135 3` UTR CG42694 + chr2R 22945222 intergenic CG42694 + chr2R_6_22945001 chr2R_22945001 D20-c5 668 chr2R 23158326 23158351 chr2R 23158427 23158451 8 101 1.0 5.0 3.0 2.0 125 chr2R 23158326 intron CG9899 + chr2R 23158388 intron CG9899 + chr2R 23158451 intron CG9899 + chr2R_8_23155001 chr2R_23155001 D20-c5 669 chr2R 23179687 23179725 chr2R 23179878 23179909 6 190 0.5 2.5 1.5 2.4 222 chr2R 23179687 intron CG34371 - chr2R 23179798 intron CG34371 - chr2R 23179909 intron CG34371 - chr2R_6_23175001 chr2R_23175001 D20-c5 670 chr2R 23186566 23186595 chr2R 23186669 23186698 5 103 2.0 2.0 2.0 1.7 132 chr2R 23186566 intron CG34371 - chr2R 23186632 intron CG34371 - chr2R 23186698 intron CG34371 - chr2R_5_23185001 chr2R_23185001 D20-c5 671 chr2R 23254604 23254651 chr2R 23254708 23254754 12 101 4.0 4.0 4.0 2.4 150 chr2R 23254604 intergenic not near genes chr2R 23254679 intergenic not near genes chr2R 23254754 intergenic not near genes chr2R_12_23250001 chr2R_23250001 D20-c5 672 chr2R 23463361 23463410 chr2R 23463464 23463513 7 104 1.5 1.5 1.5 2.8 152 chr2R 23463361 intron CG43795 + chr2R 23463437 intron CG43795 + chr2R 23463513 intron CG43795 + chr2R_7_23460001 chr2R_23460001 D20-c5 673 chr2R 23496714 23496769 chr2R 23497074 23497129 9 359 3.0 3.5 3.2 2.1 415 chr2R 23496714 intergenic not near genes chr2R 23496922 intergenic not near genes chr2R 23497129 intergenic not near genes chr2R_9_23495001 chr2R_23495001 D20-c5 674 chr2R 23529563 23529583 chr2R 23537164 23537184 412 4 7599 4.5 5.5 5.0 0.7 7621 chr2R 23529563 intron bw - chr2R 23533374 intron bw - chr2R 23537184 exon bw - chr2R_4_23530001 chr2R_23530001 D20-c5 675 chr2R 23529591 23529604 chr2R 23537155 23537204 412 4 7590 2.5 4.0 3.2 1.0 7613 chr2R 23529591 exon bw - chr2R 23533398 intron bw - chr2R 23537204 exon bw - chr2R_4_23530001 chr2R_23530001 D20-c5 676 chr2R 23563877 23563918 chr2R 23563982 23564023 14 105 3.0 3.5 3.2 3.3 146 chr2R 23563877 3` UTR Pi3K59F + chr2R 23563950 3` UTR Pi3K59F + chr2R 23564023 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_14_23560001 chr2R_23560001 D20-c5 677 chr2R 23589156 23589188 chr2R 23589258 23589290 7 102 3.0 1.5 2.2 2.2 134 chr2R 23589156 intron apt + chr2R 23589223 intron apt + chr2R 23589290 intron apt + chr2R_7_23585001 chr2R_23585001 D20-c5 678 chr2R 23607015 23607190 chr2R 23607119 23607308 12 110 0.5 0.0 0.2 10.0 293 chr2R 23607015 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607308 intron CG17664 - chr2R_12_23605001 chr2R_23605001 D20-c5 679 chr2R 23705625 23705678 chr2R 23710878 23710932 17 5254 25.0 28.5 26.8 0.6 5307 chr2R 23705625 exon l(2)not - chr2R 23708278 intron,exon l(2)not -,l(2)tid + chr2R 23710932 intergenic not near genes chr2R_17_23705001 chr2R_23705001 D20-c5 680 chr2R 23719775 23719816 chr2R 23720016 23720040 5 237 2.5 2.5 2.5 1.4 265 chr2R 23719775 intron,exon Sesn +,CG18128 - chr2R 23719908 intron,5` UTR Sesn +,CG18128 - chr2R 23720040 intron Sesn + chr2R_5_23715001 chr2R_23715001 D20-c5 681 chr2R 23744739 23744790 chr2R 23744842 23744894 11 104 3.0 2.0 2.5 3.1 155 chr2R 23744739 intron egl - chr2R 23744816 intron egl - chr2R 23744894 intron egl - chr2R_11_23740001 chr2R_23740001 D20-c5 682 chr2R 23752031 23752039 chr2R 23752133 23752147 4 106 5.5 5.5 5.5 0.6 116 chr2R 23752031 exon CG11300 + chr2R 23752089 exon CG11300 + chr2R 23752147 exon CG11300 + chr2R_4_23750001 chr2R_23750001 D20-c5 683 chr2R 23914287 23914321 chr2R 23921935 23921970 412 12 7647 5.0 10.5 7.8 1.4 7683 chr2R 23914287 exon kcc + chr2R 23918128 intron kcc + chr2R 23921970 exon kcc + chr2R_12_23915001 chr2R_23915001 D20-c5 684 chr2R 23986493 23986535 chr2R 23986596 23986640 6 104 2.5 2.0 2.2 1.9 147 chr2R 23986493 intron Phm - chr2R 23986566 intron Phm - chr2R 23986640 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 D20-c5 685 chr2R 24008394 24008443 chr2R 24008505 24008554 10 109 2.0 5.5 3.8 2.1 160 chr2R 24008394 intron Unc-89 - chr2R 24008474 intron Unc-89 - chr2R 24008554 intron Unc-89 - chr2R_10_24005001 chr2R_24005001 D20-c5 686 chr2R 24147043 24147091 chr2R 24154644 24154693 412 14 7601 5.0 3.5 4.2 2.7 7650 chr2R 24147043 intron Dat + chr2R 24150868 intron Dat + chr2R 24154693 intron Dat + chr2R_14_24150001 chr2R_24150001 D20-c5 687 chr2R 24177219 24177258 chr2R 24184728 24184768 412 5 7503 2.5 1.0 1.8 1.8 7549 chr2R 24177219 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184768 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 D20-c5 688 chr2R 24303503 24303529 chr2R 24303607 24303632 6 103 6.5 4.0 5.2 1.0 129 chr2R 24303503 intergenic not near genes chr2R 24303568 intergenic not near genes chr2R 24303632 intergenic not near genes chr2R_6_24300001 chr2R_24300001 D20-c5 689 chr2R 24400577 24400627 chr2R 24401174 24401223 11 592 2.5 1.5 2.0 3.7 646 chr2R 24400577 exon,intron slik -,Rpn8 + chr2R 24400900 exon,intron slik -,Rpn8 + chr2R 24401223 exon,intron slik -,Rpn8 + chr2R_11_24400001 chr2R_24400001 D20-c5 690 chr2R 24430930 24431097 chr2R 24431035 24431198 16 102 2.0 2.5 2.2 5.0 268 chr2R 24430930 intergenic CG15873 -,Pgam5-2 - chr2R 24431064 intergenic Pgam5-2 -,CG15873 - chr2R 24431198 intergenic Pgam5-2 -,CG15873 - chr2R_16_24430001 chr2R_24430001 D20-c5 691 chr2R 24432737 24432792 chr2R 24433268 24433323 12 527 4.0 2.0 3.0 3.0 586 chr2R 24432737 intergenic Pgam5-2 - chr2R 24433030 intergenic Pgam5-2 - chr2R 24433323 intergenic not near genes chr2R_12_24430001 chr2R_24430001 D20-c5 692 chr2R 24509286 24509334 chr2R 24509396 24509444 7 108 2.5 2.0 2.2 2.2 158 chr2R 24509286 intergenic Letm1 - chr2R 24509365 intergenic Letm1 - chr2R 24509444 intergenic Letm1 - chr2R_7_24505001 chr2R_24505001 D20-c5 693 chr2R 24590077 24590145 chr2R 24590209 24590216 11 123 0.0 4.0 2.0 3.7 139 chr2R 24590077 intron pio + chr2R 24590146 intron pio + chr2R 24590216 intron pio + chr2R_11_24590001 chr2R_24590001 D20-c5 694 chr2R 24647578 24647587 chr2R 24655158 24655169 412 4 7582 3.5 1.5 2.5 1.1 7591 chr2R 24647578 intergenic not near genes chr2R 24651374 intergenic not near genes chr2R 24655169 intergenic not near genes chr2R_4_24650001 chr2R_24650001 D20-c5 695 chr2R 24727886 24727913 chr2R 24735415 24735446 mdg1 9 7532 3.0 4.0 3.5 2.0 7560 chr2R 24727886 intron Mid1 - chr2R 24731666 intron Mid1 - chr2R 24735446 intron Mid1 - chr2R_9_24730001 chr2R_24730001 D20-c5 696 chr2R 24751649 24751691 chr2R 24751752 24751793 11 101 3.0 3.5 3.2 2.6 144 chr2R 24751649 intron CG30421 + chr2R 24751721 intron CG30421 + chr2R 24751793 intron CG30421 + chr2R_11_24750001 chr2R_24750001 D20-c5 697 chr2R 24763595 24763617 chr2R 24765596 24765618 G2 7 2001 5.5 6.0 5.8 1.0 2023 chr2R 24763595 exon CG3894 + chr2R 24764606 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_7_24760001 chr2R_24760001 D20-c5 698 chr2R 24884027 24884069 chr2R 24884134 24884176 5 105 1.0 2.0 1.5 2.0 149 chr2R 24884027 intron NKAIN + chr2R 24884102 intron NKAIN + chr2R 24884176 intron NKAIN + chr2R_5_24880001 chr2R_24880001 D20-c5 699 chr2R 24953256 24953301 chr2R 24953364 24953408 4 108 3.0 0.0 1.5 1.6 152 chr2R 24953256 exon CG12851 + chr2R 24953332 3` UTR CG12851 + chr2R 24953408 3` UTR CG12851 + chr2R_4_24950001 chr2R_24950001 D20-c5 700 chr2R 25004867 25004914 chr2R 25004970 25005017 5 102 6.5 2.0 4.2 1.0 150 chr2R 25004867 intron zip - chr2R 25004942 intron zip - chr2R 25005017 intron zip - chr2R_5_25000001 chr2R_25000001 D20-c5 701 chr2R 25014519 25014573 chr2R 25014620 25014673 12 100 2.5 0.0 1.2 5.5 154 chr2R 25014519 intron uzip + chr2R 25014596 intron uzip + chr2R 25014673 intron uzip + chr2R_12_25010001 chr2R_25010001 D20-c5 702 chr2R 25104777 25104826 chr2R 25104896 25104946 10 114 1.0 1.5 1.2 4.5 169 chr2R 25104777 intron lov - chr2R 25104862 intron lov - chr2R 25104946 intron lov - chr2R_10_25100001 chr2R_25100001 D20-c5 703 chr2R 25193317 25193369 chr2R 25193484 25193538 5 169 0.0 1.0 0.5 3.3 221 chr2R 25193317 intron CG9380 - chr2R 25193428 intron CG9380 - chr2R 25193538 intron CG9380 - chr2R_5_25190001 chr2R_25190001 D20-c5 704 chr2R 25202239 25202251 chr2R 25202360 25202383 6 129 2.5 1.5 2.0 2.0 144 chr2R 25202239 intron CG9380 - chr2R 25202311 intron CG9380 - chr2R 25202383 intron CG9380 - chr2R_6_25200001 chr2R_25200001 D20-c5 705 chr2R 25253426 25253476 chr2R 25253527 25253574 5 101 0.5 1.5 1.0 2.5 148 chr2R 25253426 intron,intron CG9380 -,CG30428 + chr2R 25253500 intron,intron CG9380 -,CG30428 + chr2R 25253574 intron,intron CG9380 -,CG30428 + chr2R_5_25250001 chr2R_25250001 D20-c5 706 chr3L 86438 86487 chr3L 86542 86588 16 103 1.0 1.0 1.0 8.0 150 chr3L 86438 intergenic not near genes chr3L 86513 intergenic not near genes chr3L 86588 intergenic not near genes chr3L_16_85001 chr3L_85001 D20-c5 707 chr3L 87033 87079 chr3L 87340 87384 12 306 3.0 4.5 3.8 2.5 351 chr3L 87033 intergenic not near genes chr3L 87208 intergenic not near genes chr3L 87384 intergenic not near genes chr3L_12_85001 chr3L_85001 D20-c5 708 chr3L 99644 99694 chr3L 99755 99801 16 107 3.0 3.5 3.2 3.8 157 chr3L 99644 intergenic not near genes chr3L 99722 intergenic not near genes chr3L 99801 intergenic not near genes chr3L_16_95001 chr3L_95001 D20-c5 709 chr3L 105719 105768 chr3L 105839 105888 8 118 2.5 2.5 2.5 2.3 169 chr3L 105719 intergenic not near genes chr3L 105804 intergenic not near genes chr3L 105888 intergenic not near genes chr3L_8_105001 chr3L_105001 D20-c5 710 chr3L 108933 108979 chr3L 109036 109083 25 102 3.0 8.5 5.8 3.7 150 chr3L 108933 intergenic not near genes chr3L 109008 intergenic not near genes chr3L 109083 intergenic not near genes chr3L_25_105001 chr3L_105001 D20-c5 711 chr3L 110189 110236 chr3L 119381 119428 roo 9 9192 0.5 4.5 2.5 2.6 9239 chr3L 110189 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119428 intergenic not near genes chr3L_9_110001 chr3L_110001 D20-c5 712 chr3L 365514 365547 chr3L 365625 365655 12 110 3.0 3.0 3.0 3.0 141 chr3L 365514 3` UTR CG1233 + chr3L 365584 3` UTR CG1233 + chr3L 365655 3` UTR CG1233 + chr3L_12_365001 chr3L_365001 D20-c5 713 chr3L 393155 393210 chr3L 393279 393335 11 121 6.5 3.5 5.0 1.8 180 chr3L 393155 3` UTR CR45378 - chr3L 393245 3` UTR CR45378 - chr3L 393335 intergenic CR45378 -,CR43969 + chr3L_11_390001 chr3L_390001 D20-c5 714 chr3L 402663 402717 chr3L 409740 409795 297 32 7076 8.0 8.0 8.0 3.6 7132 chr3L 402663 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409795 intergenic not near genes chr3L_32_405001 chr3L_405001 D20-c5 715 chr3L 459977 459997 chr3L 460077 460099 4 101 3.0 3.5 3.2 1.0 122 chr3L 459977 intron klar - chr3L 460038 intron klar - chr3L 460099 intron klar - chr3L_4_460001 chr3L_460001 D20-c5 716 chr3L 494578 494603 chr3L 494685 494710 6 105 3.0 0.0 1.5 2.4 132 chr3L 494578 intron klar - chr3L 494644 intron klar - chr3L 494710 intron klar - chr3L_6_490001 chr3L_490001 D20-c5 717 chr3L 540695 540748 chr3L 540814 540865 15 118 1.0 7.0 4.0 3.0 170 chr3L 540695 intergenic klar -,CG17180 + chr3L 540780 intergenic CG17180 +,klar - chr3L 540865 5` UTR CG17180 + chr3L_15_540001 chr3L_540001 D20-c5 718 chr3L 563952 564003 chr3L 564154 564170 19 201 2.5 6.0 4.2 3.7 218 chr3L 563952 intron hipk + chr3L 564061 intron hipk + chr3L 564170 intron hipk + chr3L_19_560001 chr3L_560001 D20-c5 719 chr3L 642459 642499 chr3L 642575 642615 9 114 1.5 6.0 3.8 1.9 156 chr3L 642459 5` UTR CR43334 + chr3L 642537 5` UTR CR43334 + chr3L 642615 5` UTR CR43334 + chr3L_9_640001 chr3L_640001 D20-c5 720 chr3L 651373 651419 chr3L 651485 651531 11 111 7.0 2.5 4.8 1.9 158 chr3L 651373 intergenic Gale +,CG3402 - chr3L 651452 intergenic CG3402 -,Gale + chr3L 651531 intergenic CG3402 -,Gale + chr3L_11_650001 chr3L_650001 D20-c5 721 chr3L 857973 858024 chr3L 866479 866519 Tirant 16 8504 5.0 4.5 4.8 2.8 8546 chr3L 857973 intergenic not near genes chr3L 862246 intergenic not near genes chr3L 866519 5` UTR CG12502 + chr3L_16_860001 chr3L_860001 D20-c5 722 chr3L 905080 905090 chr3L 905159 905196 4 100 0.0 2.5 1.2 1.8 116 chr3L 905080 intergenic not near genes chr3L 905138 intergenic not near genes chr3L 905196 intergenic not near genes chr3L_4_905001 chr3L_905001 D20-c5 723 chr3L 925155 925209 chr3L 932605 932657 mdg1 9 7450 2.0 3.5 2.8 2.4 7502 chr3L 925155 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932657 intron Glut1 + chr3L_9_925001 chr3L_925001 D20-c5 724 chr3L 933889 933942 chr3L 934018 934069 8 127 0.5 3.5 2.0 2.7 180 chr3L 933889 intron Glut1 + chr3L 933979 intron Glut1 + chr3L 934069 intron Glut1 + chr3L_8_930001 chr3L_930001 D20-c5 725 chr3L 939755 939789 chr3L 940901 940934 jockey 10 1145 4.5 2.0 3.2 2.4 1179 chr3L 939755 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940934 intron Glut1 + chr3L_10_940001 chr3L_940001 D20-c5 726 chr3L 987441 987473 chr3L 987543 987575 11 97 10.5 6.5 8.5 1.2 134 chr3L 987441 intergenic not near genes chr3L 987508 intergenic not near genes chr3L 987575 intergenic not near genes chr3L_11_985001 chr3L_985001 D20-c5 727 chr3L 1040528 1040566 chr3L 1040637 1040675 12 110 2.5 3.0 2.8 3.2 147 chr3L 1040528 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040675 intron bab1 - chr3L_12_1040001 chr3L_1040001 D20-c5 728 chr3L 1077735 1077767 chr3L 1078036 1078068 6 301 1.5 1.0 1.2 2.7 333 chr3L 1077735 intron bab1 - chr3L 1077902 intron bab1 - chr3L 1078068 intron bab1 - chr3L_6_1075001 chr3L_1075001 D20-c5 729 chr3L 1109618 1109661 chr3L 1109724 1109774 7 112 5.0 2.5 3.8 1.5 156 chr3L 1109618 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109774 intergenic not near genes chr3L_7_1105001 chr3L_1105001 D20-c5 730 chr3L 1154117 1154154 chr3L 1163292 1163329 roo 4 9175 1.5 3.5 2.5 1.1 9212 chr3L 1154117 intron bab2 - chr3L 1158723 intron bab2 - chr3L 1163329 intron bab2 - chr3L_4_1155001 chr3L_1155001 D20-c5 731 chr3L 1219570 1219621 chr3L 1227327 1227379 412 17 7757 7.0 3.5 5.2 2.7 7809 chr3L 1219570 intron mwh + chr3L 1223474 intron mwh + chr3L 1227379 intron mwh + chr3L_17_1220001 chr3L_1220001 D20-c5 732 chr3L 1347136 1347193 chr3L 1347243 1347265 22 107 3.0 5.0 4.0 4.4 129 chr3L 1347136 intron Ptp61F - chr3L 1347200 intron Ptp61F - chr3L 1347265 intron Ptp61F - chr3L_22_1345001 chr3L_1345001 D20-c5 733 chr3L 1357093 1357146 chr3L 1357197 1357250 7 104 2.0 0.5 1.2 3.2 157 chr3L 1357093 intron Ptp61F - chr3L 1357172 intron Ptp61F - chr3L 1357250 intron Ptp61F - chr3L_7_1355001 chr3L_1355001 D20-c5 734 chr3L 1396732 1396756 chr3L 1396836 1396861 7 101 9.5 14.0 11.8 0.5 129 chr3L 1396732 intron Ptp61F - chr3L 1396796 intron Ptp61F - chr3L 1396861 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 D20-c5 735 chr3L 1485720 1485738 chr3L 1486912 1486930 1360 5 1190 6.5 8.5 7.5 0.6 1210 chr3L 1485720 intron stet - chr3L 1486325 intron stet - chr3L 1486930 intron stet - chr3L_5_1485001 chr3L_1485001 D20-c5 736 chr3L 1505975 1506024 chr3L 1513597 1513646 17.6 14 7621 6.0 4.0 5.0 2.3 7671 chr3L 1505975 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513646 intron,intron Psa +,cue - chr3L_14_1505001 chr3L_1505001 D20-c5 737 chr3L 1639211 1639240 chr3L 1639409 1639446 6 203 3.5 5.0 4.2 1.2 235 chr3L 1639211 5` UTR metl - chr3L 1639328 intergenic metl -,Bgb + chr3L 1639446 intergenic metl -,Bgb + chr3L_6_1635001 chr3L_1635001 D20-c5 738 chr3L 1684001 1684046 chr3L 1684100 1684141 10 96 3.5 2.5 3.0 2.5 140 chr3L 1684001 intron CG7991 + chr3L 1684071 intron CG7991 + chr3L 1684141 intron CG7991 + chr3L_10_1680001 chr3L_1680001 D20-c5 739 chr3L 1710967 1710971 chr3L 1711074 1711075 4 106 9.0 2.0 5.5 0.6 108 chr3L 1710967 intron CG7991 + chr3L 1711021 intron CG7991 + chr3L 1711075 intron CG7991 + chr3L_4_1710001 chr3L_1710001 D20-c5 740 chr3L 1848621 1848670 chr3L 1848724 1848773 5 103 1.5 5.5 3.5 1.1 152 chr3L 1848621 intergenic not near genes chr3L 1848697 intergenic not near genes chr3L 1848773 intergenic not near genes chr3L_5_1845001 chr3L_1845001 D20-c5 741 chr3L 1922430 1922440 chr3L 1922527 1922545 6 102 5.5 4.5 5.0 1.0 115 chr3L 1922430 intron Dbx + chr3L 1922488 intron Dbx + chr3L 1922545 intron Dbx + chr3L_6_1920001 chr3L_1920001 D20-c5 742 chr3L 1978706 1978748 chr3L 1978904 1978945 9 198 17.0 18.5 17.8 0.5 239 chr3L 1978706 intergenic not near genes chr3L 1978826 intergenic not near genes chr3L 1978945 intergenic not near genes chr3L_9_1975001 chr3L_1975001 D20-c5 743 chr3L 2006472 2006502 chr3L 2006571 2006596 9 101 2.5 5.5 4.0 1.8 124 chr3L 2006472 intergenic not near genes chr3L 2006534 intergenic not near genes chr3L 2006596 intergenic not near genes chr3L_9_2005001 chr3L_2005001 D20-c5 744 chr3L 2139188 2139234 chr3L 2139288 2139339 12 104 4.0 7.0 5.5 1.8 151 chr3L 2139188 intron zormin - chr3L 2139264 intron zormin - chr3L 2139339 intron zormin - chr3L_12_2135001 chr3L_2135001 D20-c5 745 chr3L 2168753 2168800 chr3L 2168861 2168916 17 115 4.5 2.0 3.2 4.0 163 chr3L 2168753 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168916 intron CG15879 - chr3L_17_2165001 chr3L_2165001 D20-c5 746 chr3L 2181150 2181199 chr3L 2181254 2181303 10 101 2.5 2.5 2.5 2.9 153 chr3L 2181150 intergenic not near genes chr3L 2181226 intergenic not near genes chr3L 2181303 intergenic not near genes chr3L_10_2180001 chr3L_2180001 D20-c5 747 chr3L 2277952 2277995 chr3L 2278171 2278216 9 221 7.0 1.0 4.0 1.8 264 chr3L 2277952 3` UTR yellow-g2 + chr3L 2278084 intergenic yellow-g2 + chr3L 2278216 intergenic yellow-g2 + chr3L_9_2275001 chr3L_2275001 D20-c5 748 chr3L 2308003 2308033 chr3L 2308134 2308164 6 130 1.0 6.0 3.5 1.3 161 chr3L 2308003 intergenic not near genes chr3L 2308084 intergenic not near genes chr3L 2308164 intergenic not near genes chr3L_6_2305001 chr3L_2305001 D20-c5 749 chr3L 2310130 2310174 chr3L 2310898 2310942 11 767 3.0 4.0 3.5 2.4 812 chr3L 2310130 intergenic not near genes chr3L 2310536 intergenic not near genes chr3L 2310942 intergenic not near genes chr3L_11_2310001 chr3L_2310001 D20-c5 750 chr3L 2331560 2331612 chr3L 2331662 2331714 12 101 2.5 2.0 2.2 3.8 154 chr3L 2331560 intron MsR1 + chr3L 2331637 intron MsR1 + chr3L 2331714 intron MsR1 + chr3L_12_2330001 chr3L_2330001 D20-c5 751 chr3L 2355427 2355456 chr3L 2355640 2355667 5 213 1.5 0.5 1.0 2.5 240 chr3L 2355427 intergenic not near genes chr3L 2355547 intergenic not near genes chr3L 2355667 intergenic not near genes chr3L_5_2355001 chr3L_2355001 D20-c5 752 chr3L 2411319 2411344 chr3L 2411424 2411449 7 105 2.0 3.0 2.5 2.0 130 chr3L 2411319 intron CG45186 + chr3L 2411384 intron CG45186 + chr3L 2411449 intron CG45186 + chr3L_7_2410001 chr3L_2410001 D20-c5 753 chr3L 2429036 2429076 chr3L 2429154 2429194 8 118 1.5 4.5 3.0 2.0 158 chr3L 2429036 intron CG45186 + chr3L 2429115 intron CG45186 + chr3L 2429194 intron CG45186 + chr3L_8_2425001 chr3L_2425001 D20-c5 754 chr3L 2433474 2433518 chr3L 2433581 2433621 8 107 1.5 3.5 2.5 2.3 147 chr3L 2433474 intron CG45186 + chr3L 2433548 intron CG45186 + chr3L 2433621 intron CG45186 + chr3L_8_2430001 chr3L_2430001 D20-c5 755 chr3L 2447480 2447531 chr3L 2456661 2456712 roo 16 9178 4.5 2.5 3.5 3.6 9232 chr3L 2447480 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456712 intron CG45186 + chr3L_16_2450001 chr3L_2450001 D20-c5 756 chr3L 2520626 2520678 chr3L 2520747 2520799 9 121 2.5 5.0 3.8 1.9 173 chr3L 2520626 intron Spn - chr3L 2520712 intron Spn - chr3L 2520799 intron Spn - chr3L_9_2520001 chr3L_2520001 D20-c5 757 chr3L 2533640 2533672 chr3L 2533744 2533759 7 101 6.5 6.5 6.5 0.9 119 chr3L 2533640 intron Spn - chr3L 2533700 intron Spn - chr3L 2533759 intron Spn - chr3L_7_2530001 chr3L_2530001 D20-c5 758 chr3L 2548246 2548283 chr3L 2548358 2548397 7 112 3.0 4.0 3.5 1.6 151 chr3L 2548246 intron Spn - chr3L 2548322 intron Spn - chr3L 2548397 intron Spn - chr3L_7_2545001 chr3L_2545001 D20-c5 759 chr3L 2551744 2551789 chr3L 2553578 2553617 6 1828 13.0 21.0 17.0 0.3 1873 chr3L 2551744 intron Spn - chr3L 2552680 intron Spn - chr3L 2553617 intron Spn - chr3L_6_2550001 chr3L_2550001 D20-c5 760 chr3L 2927820 2927855 chr3L 2936122 2936156 Tirant 5 8302 1.5 0.5 1.0 2.5 8336 chr3L 2927820 intron Shab + chr3L 2931988 intron Shab + chr3L 2936156 intron Shab + chr3L_5_2930001 chr3L_2930001 D20-c5 761 chr3L 3061262 3061293 chr3L 3069870 3069901 Tirant 5 8608 2.5 2.5 2.5 1.4 8639 chr3L 3061262 intron CG32486 - chr3L 3065582 intron CG32486 - chr3L 3069901 intron CG32486 - chr3L_5_3065001 chr3L_3065001 D20-c5 762 chr3L 3165326 3165379 chr3L 3165434 3165487 16 107 3.0 3.0 3.0 4.0 161 chr3L 3165326 intron,intron Asciz -,CG32280 + chr3L 3165406 intron,intron Asciz -,CG32280 + chr3L 3165487 intron,intron Asciz -,CG32280 + chr3L_16_3165001 chr3L_3165001 D20-c5 763 chr3L 3281421 3281435 chr3L 3281941 3281956 Doc 4 521 8.5 4.0 6.2 0.6 535 chr3L 3281421 intron CG12017 + chr3L 3281688 intron CG12017 + chr3L 3281956 intron CG12017 + chr3L_4_3280001 chr3L_3280001 D20-c5 764 chr3L 3281454 3281470 chr3L 3281940 3281991 Doc 8 512 5.5 4.0 4.8 1.4 537 chr3L 3281454 intron CG12017 + chr3L 3281722 intron CG12017 + chr3L 3281991 intron CG12017 + chr3L_8_3280001 chr3L_3280001 D20-c5 765 chr3L 3314143 3314192 chr3L 3314277 3314326 20 132 3.5 2.5 3.0 5.0 183 chr3L 3314143 intergenic ZnT63C +,Drsl2 + chr3L 3314234 intergenic Drsl2 +,ZnT63C + chr3L 3314326 intergenic Drsl2 +,ZnT63C + chr3L_20_3310001 chr3L_3310001 D20-c5 766 chr3L 3317528 3317566 chr3L 3317632 3317670 6 104 0.0 3.0 1.5 2.4 142 chr3L 3317528 intergenic Drsl5 +,PIG-C - chr3L 3317599 intergenic PIG-C -,Drsl5 + chr3L 3317670 intergenic PIG-C - chr3L_6_3315001 chr3L_3315001 D20-c5 767 chr3L 3412971 3412990 chr3L 3413072 3413091 6 100 0.0 5.5 2.8 1.6 120 chr3L 3412971 intron sty - chr3L 3413031 intron sty - chr3L 3413091 intron sty - chr3L_6_3410001 chr3L_3410001 D20-c5 768 chr3L 3475066 3475085 chr3L 3475534 3475554 jockey 4 466 3.0 3.5 3.2 1.0 488 chr3L 3475066 intron CG42324 + chr3L 3475310 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_4_3475001 chr3L_3475001 D20-c5 769 chr3L 3500122 3500176 chr3L 3500236 3500288 12 113 4.5 2.5 3.5 2.7 166 chr3L 3500122 intron CG42324 + chr3L 3500205 intron CG42324 + chr3L 3500288 intron CG42324 + chr3L_12_3500001 chr3L_3500001 D20-c5 770 chr3L 3565933 3565950 chr3L 3566034 3566051 4 101 3.5 1.5 2.5 1.1 118 chr3L 3565933 intron Eip63E + chr3L 3565992 intron Eip63E + chr3L 3566051 intron Eip63E + chr3L_4_3565001 chr3L_3565001 D20-c5 771 chr3L 3566379 3566425 chr3L 3566487 3566533 4 108 0.5 1.0 0.8 2.2 154 chr3L 3566379 intron Eip63E + chr3L 3566456 intron Eip63E + chr3L 3566533 intron Eip63E + chr3L_4_3565001 chr3L_3565001 D20-c5 772 chr3L 3601289 3601326 chr3L 3606625 3606661 copia 4 5336 1.5 0.0 0.8 2.2 5372 chr3L 3601289 intron Eip63E + chr3L 3603975 intron Eip63E + chr3L 3606661 intron Eip63E + chr3L_4_3600001 chr3L_3600001 D20-c5 773 chr3L 3620750 3620786 chr3L 3620864 3620901 5 115 3.0 2.5 2.8 1.3 151 chr3L 3620750 exon CG14974 - chr3L 3620826 intron CG14974 - chr3L 3620901 exon CG14974 - chr3L_5_3620001 chr3L_3620001 D20-c5 774 chr3L 3833712 3833747 chr3L 3833978 3834013 pogo 6 266 3.0 0.5 1.8 2.1 301 chr3L 3833712 intron enc + chr3L 3833862 intron enc + chr3L 3834013 intron enc + chr3L_6_3830001 chr3L_3830001 D20-c5 775 chr3L 4146819 4146836 chr3L 4146911 4146943 5 104 0.0 3.0 1.5 2.0 124 chr3L 4146819 intergenic not near genes chr3L 4146881 intergenic not near genes chr3L 4146943 intergenic not near genes chr3L_5_4145001 chr3L_4145001 D20-c5 776 chr3L 4229723 4229756 chr3L 4229832 4229866 8 114 3.0 2.0 2.5 2.3 143 chr3L 4229723 intron ImpL2 - chr3L 4229794 intron ImpL2 - chr3L 4229866 intron ImpL2 - chr3L_8_4225001 chr3L_4225001 D20-c5 777 chr3L 4858284 4858334 chr3L 4858399 4858449 18 113 3.0 2.5 2.8 4.7 165 chr3L 4858284 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858449 intergenic not near genes chr3L_18_4855001 chr3L_4855001 D20-c5 778 chr3L 4941814 4941856 chr3L 4942122 4942164 8 308 2.5 1.0 1.8 2.9 350 chr3L 4941814 intron Con - chr3L 4941989 intron Con - chr3L 4942164 intron Con - chr3L_8_4940001 chr3L_4940001 D20-c5 779 chr3L 4942702 4942748 chr3L 4942806 4942852 11 102 3.5 2.5 3.0 2.8 150 chr3L 4942702 intron Con - chr3L 4942777 intron Con - chr3L 4942852 intron Con - chr3L_11_4940001 chr3L_4940001 D20-c5 780 chr3L 5045433 5045477 chr3L 5050238 5050283 Doc 5 4806 1.5 0.5 1.0 2.5 4850 chr3L 5045433 intron Con - chr3L 5047858 intron Con - chr3L 5050283 intron Con - chr3L_5_5045001 chr3L_5045001 D20-c5 781 chr3L 5054936 5054962 chr3L 5055041 5055067 6 105 3.5 4.5 4.0 1.2 131 chr3L 5054936 intron Con - chr3L 5055002 intron Con - chr3L 5055067 intron Con - chr3L_6_5055001 chr3L_5055001 D20-c5 782 chr3L 5054965 5054972 chr3L 5055032 5055077 7 88 3.0 3.5 3.2 1.7 112 chr3L 5054965 intron Con - chr3L 5055021 intron Con - chr3L 5055077 intron Con - chr3L_7_5055001 chr3L_5055001 D20-c5 783 chr3L 5081844 5081875 chr3L 5081938 5081979 8 102 1.0 5.0 3.0 2.0 135 chr3L 5081844 intergenic not near genes chr3L 5081912 intergenic not near genes chr3L 5081979 intergenic not near genes chr3L_8_5080001 chr3L_5080001 D20-c5 784 chr3L 5485235 5485274 chr3L 5485567 5485605 5 332 0.5 0.5 0.5 3.3 370 chr3L 5485235 intergenic not near genes chr3L 5485420 intergenic not near genes chr3L 5485605 intergenic not near genes chr3L_5_5485001 chr3L_5485001 D20-c5 785 chr3L 5537695 5537731 chr3L 5538062 5538098 jockey 5 367 1.0 0.5 0.8 2.8 403 chr3L 5537695 intergenic not near genes chr3L 5537896 intergenic not near genes chr3L 5538098 intergenic CG10625 - chr3L_5_5535001 chr3L_5535001 D20-c5 786 chr3L 5572132 5572158 chr3L 5572249 5572275 9 117 4.0 5.5 4.8 1.6 143 chr3L 5572132 intron Msr-110 - chr3L 5572204 intron Msr-110 - chr3L 5572275 intron Msr-110 - chr3L_9_5570001 chr3L_5570001 D20-c5 787 chr3L 5727177 5727199 chr3L 5727670 5727696 5 496 1.5 2.0 1.8 1.8 519 chr3L 5727177 intron sif + chr3L 5727436 intron sif + chr3L 5727696 intron sif + chr3L_5_5725001 chr3L_5725001 D20-c5 788 chr3L 5818253 5818272 chr3L 5818362 5818378 6 108 2.5 2.0 2.2 1.9 125 chr3L 5818253 exon vn - chr3L 5818316 intron vn - chr3L 5818378 intron vn - chr3L_6_5815001 chr3L_5815001 D20-c5 789 chr3L 5908053 5908105 chr3L 5908158 5908209 5 105 0.0 0.0 0.0 5.0 156 chr3L 5908053 intron CG13288 + chr3L 5908131 intron CG13288 + chr3L 5908209 intron CG13288 + chr3L_5_5905001 chr3L_5905001 D20-c5 790 chr3L 5910008 5910063 chr3L 5910274 5910329 pogo 5 266 1.0 1.0 1.0 2.5 321 chr3L 5910008 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910329 intron CG13288 + chr3L_5_5910001 chr3L_5910001 D20-c5 791 chr3L 5926292 5926338 chr3L 5926506 5926545 BS 10 211 1.5 2.5 2.0 3.3 253 chr3L 5926292 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926545 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 D20-c5 792 chr3L 5940040 5940089 chr3L 5940291 5940335 12 253 4.0 4.5 4.2 2.3 295 chr3L 5940040 intron CG33993 - chr3L 5940188 intron CG33993 - chr3L 5940335 intron CG33993 - chr3L_12_5940001 chr3L_5940001 D20-c5 793 chr3L 5992582 5992616 chr3L 5992707 5992743 5 127 3.0 1.5 2.2 1.6 161 chr3L 5992582 intergenic not near genes chr3L 5992662 intergenic not near genes chr3L 5992743 intergenic not near genes chr3L_5_5990001 chr3L_5990001 D20-c5 794 chr3L 6052629 6052657 chr3L 6052739 6052767 6 110 9.0 8.0 8.5 0.6 138 chr3L 6052629 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052767 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 D20-c5 795 chr3L 6159851 6159892 chr3L 6159964 6160005 12 114 5.0 3.0 4.0 2.4 154 chr3L 6159851 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6160005 intergenic not near genes chr3L_12_6155001 chr3L_6155001 D20-c5 796 chr3L 6220901 6220940 chr3L 6230078 6230117 roo 4 9177 3.0 1.0 2.0 1.3 9216 chr3L 6220901 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230117 intergenic not near genes chr3L_4_6225001 chr3L_6225001 D20-c5 797 chr3L 6353373 6353393 chr3L 6353468 6353498 5 100 3.0 1.5 2.2 1.6 125 chr3L 6353373 intergenic not near genes chr3L 6353436 intergenic not near genes chr3L 6353498 intergenic not near genes chr3L_5_6350001 chr3L_6350001 D20-c5 798 chr3L 6372115 6372148 chr3L 6372225 6372266 10 112 6.0 0.0 3.0 2.5 151 chr3L 6372115 intergenic not near genes chr3L 6372190 intergenic not near genes chr3L 6372266 intergenic not near genes chr3L_10_6370001 chr3L_6370001 D20-c5 799 chr3L 6573629 6573685 chr3L 6573757 6573811 18 128 3.0 3.0 3.0 4.5 182 chr3L 6573629 intron,intron CG18769 +,jv - chr3L 6573720 intron,intron CG18769 +,jv - chr3L 6573811 intron,intron CG18769 +,jv - chr3L_18_6570001 chr3L_6570001 D20-c5 800 chr3L 6623459 6623505 chr3L 6623573 6623626 12 118 1.5 3.0 2.2 3.8 167 chr3L 6623459 intergenic not near genes chr3L 6623542 intergenic GluRIA + chr3L 6623626 intergenic GluRIA + chr3L_12_6620001 chr3L_6620001 D20-c5 801 chr3L 6660990 6661028 chr3L 6661078 6661127 8 101 7.5 3.0 5.2 1.3 137 chr3L 6660990 intergenic not near genes chr3L 6661058 intergenic not near genes chr3L 6661127 intergenic not near genes chr3L_8_6660001 chr3L_6660001 D20-c5 802 chr3L 6681317 6681367 chr3L 6681419 6681469 11 101 2.0 1.0 1.5 4.4 152 chr3L 6681317 intergenic not near genes chr3L 6681393 intergenic not near genes chr3L 6681469 intergenic not near genes chr3L_11_6680001 chr3L_6680001 D20-c5 803 chr3L 6727767 6727810 chr3L 6727888 6727933 12 122 0.5 0.5 0.5 8.0 166 chr3L 6727767 intergenic CR45417 + chr3L 6727850 intergenic CR45417 + chr3L 6727933 intergenic CR45417 + chr3L_12_6725001 chr3L_6725001 D20-c5 804 chr3L 6798634 6798670 chr3L 6798933 6798969 6 299 2.5 4.0 3.2 1.4 335 chr3L 6798634 intergenic not near genes chr3L 6798802 intergenic not near genes chr3L 6798969 intergenic not near genes chr3L_6_6795001 chr3L_6795001 D20-c5 805 chr3L 6835907 6835917 chr3L 6836010 6836020 4 103 1.5 0.5 1.0 2.0 113 chr3L 6835907 intergenic not near genes chr3L 6835964 intergenic not near genes chr3L 6836020 intergenic not near genes chr3L_4_6835001 chr3L_6835001 D20-c5 806 chr3L 6855918 6855945 chr3L 6860727 6860753 Doc 4 4809 2.0 2.0 2.0 1.3 4835 chr3L 6855918 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860753 intergenic not near genes chr3L_4_6855001 chr3L_6855001 D20-c5 807 chr3L 6934318 6934359 chr3L 6934454 6934495 6 136 1.0 1.0 1.0 3.0 177 chr3L 6934318 exon CG14820 + chr3L 6934406 intron CG14820 + chr3L 6934495 exon CG14820 + chr3L_6_6930001 chr3L_6930001 D20-c5 808 chr3L 7033156 7033203 chr3L 7033261 7033310 10 106 4.5 5.0 4.8 1.7 154 chr3L 7033156 intron Mp + chr3L 7033233 intron Mp + chr3L 7033310 intron Mp + chr3L_10_7030001 chr3L_7030001 D20-c5 809 chr3L 7041904 7041919 chr3L 7042007 7042022 5 102 1.0 2.5 1.8 1.8 118 chr3L 7041904 intron Mp + chr3L 7041963 intron Mp + chr3L 7042022 intron Mp + chr3L_5_7040001 chr3L_7040001 D20-c5 810 chr3L 7085147 7085195 chr3L 7085256 7085304 10 109 4.5 3.0 3.8 2.1 157 chr3L 7085147 intergenic not near genes chr3L 7085226 intergenic not near genes chr3L 7085304 intergenic not near genes chr3L_10_7085001 chr3L_7085001 D20-c5 811 chr3L 7164536 7164567 chr3L 7164642 7164672 16 106 2.0 3.0 2.5 4.6 136 chr3L 7164536 intron Dscam2 - chr3L 7164604 intron Dscam2 - chr3L 7164672 intron Dscam2 - chr3L_16_7160001 chr3L_7160001 D20-c5 812 chr3L 7174003 7174020 chr3L 7174121 7174138 5 118 5.0 1.5 3.2 1.2 135 chr3L 7174003 intron Dscam2 - chr3L 7174070 intron Dscam2 - chr3L 7174138 intron Dscam2 - chr3L_5_7170001 chr3L_7170001 D20-c5 813 chr3L 7274702 7274704 chr3L 7274831 7274833 5 129 6.0 2.5 4.2 1.0 131 chr3L 7274702 intron unc-13-4A - chr3L 7274768 intron unc-13-4A - chr3L 7274833 intron unc-13-4A - chr3L_5_7270001 chr3L_7270001 D20-c5 814 chr3L 7329007 7329026 chr3L 7329118 7329138 4 111 0.0 1.5 0.8 2.2 131 chr3L 7329007 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329072 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329138 5` UTR,5` UTR CG42307 +,mus312 + chr3L_4_7325001 chr3L_7325001 D20-c5 815 chr3L 7355722 7355775 chr3L 7363604 7363657 13 7884 35.0 26.0 30.5 0.4 7935 chr3L 7355722 exon CTCF - chr3L 7359690 exon pst - chr3L 7363657 exon Sec63 + chr3L_13_7355001 chr3L_7355001 D20-c5 816 chr3L 7498741 7498776 chr3L 7503543 7503577 F-element 5 4801 1.0 1.5 1.2 2.3 4836 chr3L 7498741 5` UTR CG8539 - chr3L 7501159 intergenic not near genes chr3L 7503577 intergenic not near genes chr3L_5_7500001 chr3L_7500001 D20-c5 817 chr3L 7508666 7508706 chr3L 7508769 7508815 11 106 1.5 0.0 0.8 6.1 149 chr3L 7508666 intergenic not near genes chr3L 7508740 intergenic not near genes chr3L 7508815 intergenic not near genes chr3L_11_7505001 chr3L_7505001 D20-c5 818 chr3L 7532901 7532941 chr3L 7533004 7533042 5 102 0.5 1.5 1.0 2.5 141 chr3L 7532901 intron lqf + chr3L 7532972 intron lqf + chr3L 7533042 intron lqf + chr3L_5_7530001 chr3L_7530001 D20-c5 819 chr3L 7572263 7572294 chr3L 7572375 7572406 6 112 7.0 0.5 3.8 1.2 143 chr3L 7572263 intergenic not near genes chr3L 7572334 intergenic not near genes chr3L 7572406 intergenic not near genes chr3L_6_7570001 chr3L_7570001 D20-c5 820 chr3L 7591135 7591175 chr3L 7591247 7591291 7 113 2.0 4.5 3.2 1.7 156 chr3L 7591135 intergenic CG7716 - chr3L 7591213 intergenic CG7716 - chr3L 7591291 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 D20-c5 821 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028207 3.5 18.0 10.8 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 D20-c5 822 chr3L 7775496 7775536 chr3L 7775621 7775652 9 122 0.5 3.0 1.8 3.2 156 chr3L 7775496 5` UTR Clk - chr3L 7775574 5` UTR Clk - chr3L 7775652 intergenic Clk - chr3L_9_7775001 chr3L_7775001 D20-c5 823 chr3L 7814698 7814726 chr3L 7814808 7814828 7 109 1.5 0.5 1.0 3.5 130 chr3L 7814698 3` UTR Pdp1 - chr3L 7814763 3` UTR Pdp1 - chr3L 7814828 3` UTR Pdp1 - chr3L_7_7810001 chr3L_7810001 D20-c5 824 chr3L 7865539 7865580 chr3L 7865704 7865744 5 165 2.0 0.0 1.0 2.5 205 chr3L 7865539 intron Pdp1 - chr3L 7865642 intron Pdp1 - chr3L 7865744 intron Pdp1 - chr3L_5_7865001 chr3L_7865001 D20-c5 825 chr3L 7869640 7869664 chr3L 7869745 7869759 4 102 3.5 5.5 4.5 0.7 119 chr3L 7869640 exon CG32365 + chr3L 7869700 exon CG32365 + chr3L 7869759 exon CG32365 + chr3L_4_7865001 chr3L_7865001 D20-c5 826 chr3L 7916819 7916854 chr3L 7926013 7926050 roo 4 9193 1.0 0.5 0.8 2.2 9231 chr3L 7916819 3` UTR syd - chr3L 7921434 intron syd - chr3L 7926050 3` UTR syd - chr3L_4_7920001 chr3L_7920001 D20-c5 827 chr3L 7985356 7985390 chr3L 7987709 7987743 NOF 7 2353 1.5 2.5 2.0 2.3 2387 chr3L 7985356 intron nmo + chr3L 7986550 intron nmo + chr3L 7987743 intron nmo + chr3L_7_7985001 chr3L_7985001 D20-c5 828 chr3L 8456458 8456481 chr3L 8456576 8456599 9 115 2.0 6.5 4.2 1.7 141 chr3L 8456458 intron Gug + chr3L 8456528 intron Gug + chr3L 8456599 intron Gug + chr3L_9_8455001 chr3L_8455001 D20-c5 829 chr3L 8481761 8481798 chr3L 8490939 8490977 roo 9 9181 4.5 4.0 4.2 1.7 9216 chr3L 8481761 intron CG43163 - chr3L 8486369 intron CG43163 - chr3L 8490977 intron CG43163 - chr3L_9_8485001 chr3L_8485001 D20-c5 830 chr3L 8558668 8558687 chr3L 8558784 8558800 4 115 2.0 3.5 2.8 1.1 132 chr3L 8558668 intron rhea + chr3L 8558734 intron rhea + chr3L 8558800 intron rhea + chr3L_4_8555001 chr3L_8555001 D20-c5 831 chr3L 8691133 8691189 chr3L 8691240 8691296 9 107 1.0 1.5 1.2 4.1 163 chr3L 8691133 intergenic not near genes chr3L 8691214 intergenic not near genes chr3L 8691296 intergenic not near genes chr3L_9_8690001 chr3L_8690001 D20-c5 832 chr3L 8782107 8782153 chr3L 8782257 8782304 6 151 0.0 3.0 1.5 2.4 197 chr3L 8782107 intron Fhos + chr3L 8782206 intron Fhos + chr3L 8782304 intron Fhos + chr3L_6_8780001 chr3L_8780001 D20-c5 833 chr3L 8837362 8837395 chr3L 8837467 8837500 10 105 5.0 8.5 6.8 1.3 138 chr3L 8837362 intron,exon dally +,CG32026 + chr3L 8837431 intron,exon dally +,CG32026 + chr3L 8837500 intron,exon dally +,CG32026 + chr3L_10_8835001 chr3L_8835001 D20-c5 834 chr3L 9003925 9003968 chr3L 9004035 9004078 7 106 1.5 1.5 1.5 2.8 153 chr3L 9003925 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004078 intergenic not near genes chr3L_7_9000001 chr3L_9000001 D20-c5 835 chr3L 9013689 9013691 chr3L 18417066 18417066 5 9403376 17.5 12.0 14.8 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 D20-c5 836 chr3L 9076911 9076937 chr3L 9084495 9084522 412 9 7584 6.0 5.0 5.5 1.4 7611 chr3L 9076911 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084522 exon Tequila + chr3L_9_9080001 chr3L_9080001 D20-c5 837 chr3L 9128181 9128219 chr3L 9128291 9128329 4 110 4.5 1.0 2.8 1.1 148 chr3L 9128181 intron bol - chr3L 9128255 intron bol - chr3L 9128329 intron bol - chr3L_4_9125001 chr3L_9125001 D20-c5 838 chr3L 9219225 9219274 chr3L 9219920 9219955 jockey 10 695 5.5 2.5 4.0 2.0 730 chr3L 9219225 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219955 intergenic not near genes chr3L_10_9215001 chr3L_9215001 D20-c5 839 chr3L 9270590 9270632 chr3L 9278370 9278412 roo 7 7780 3.0 1.0 2.0 2.3 7822 chr3L 9270590 intron GluRIB + chr3L 9274501 intron GluRIB + chr3L 9278412 exon GluRIB + chr3L_7_9270001 chr3L_9270001 D20-c5 840 chr3L 9279871 9279926 chr3L 9279980 9280035 6 106 1.5 1.5 1.5 2.4 164 chr3L 9279871 intron GluRIB + chr3L 9279953 intron GluRIB + chr3L 9280035 intron GluRIB + chr3L_6_9275001 chr3L_9275001 D20-c5 841 chr3L 9312704 9312722 chr3L 9312803 9312824 4 102 2.5 0.0 1.2 1.8 120 chr3L 9312704 intergenic not near genes chr3L 9312764 intergenic not near genes chr3L 9312824 intergenic not near genes chr3L_4_9310001 chr3L_9310001 D20-c5 842 chr3L 9328369 9328410 chr3L 9328505 9328543 10 134 2.0 3.5 2.8 2.6 174 chr3L 9328369 intergenic not near genes chr3L 9328456 intergenic not near genes chr3L 9328543 intergenic not near genes chr3L_10_9325001 chr3L_9325001 D20-c5 843 chr3L 9359573 9359616 chr3L 9359689 9359732 6 116 0.5 1.0 0.8 3.3 159 chr3L 9359573 3` UTR CG32039 + chr3L 9359652 3` UTR CG32039 + chr3L 9359732 3` UTR CG32039 + chr3L_6_9355001 chr3L_9355001 D20-c5 844 chr3L 9637831 9637887 chr3L 9637938 9637994 5 107 3.5 1.0 2.2 1.6 163 chr3L 9637831 exon fry - chr3L 9637912 intron fry - chr3L 9637994 intron fry - chr3L_5_9635001 chr3L_9635001 D20-c5 845 chr3L 9660874 9660920 chr3L 9661072 9661118 17 195 5.0 3.0 4.0 3.4 244 chr3L 9660874 intron fry - chr3L 9660996 intron fry - chr3L 9661118 intron fry - chr3L_17_9660001 chr3L_9660001 D20-c5 846 chr3L 9742031 9742065 chr3L 9742490 9742531 8 462 3.0 3.0 3.0 2.0 500 chr3L 9742031 intron,intron CG42268 -,CR44348 + chr3L 9742281 intron,intron CG42268 -,CR44348 + chr3L 9742531 intron,intron CG42268 -,CR44348 + chr3L_8_9740001 chr3L_9740001 D20-c5 847 chr3L 9753866 9753894 chr3L 9753977 9754004 8 106 0.5 5.0 2.8 2.1 138 chr3L 9753866 intron CG42268 - chr3L 9753935 intron CG42268 - chr3L 9754004 intron CG42268 - chr3L_8_9750001 chr3L_9750001 D20-c5 848 chr3L 10214707 10214757 chr3L 10214819 10214917 4 136 2.0 0.0 1.0 2.0 210 chr3L 10214707 intergenic not near genes chr3L 10214812 intergenic not near genes chr3L 10214917 intergenic not near genes chr3L_4_10210001 chr3L_10210001 D20-c5 849 chr3L 10222722 10222769 chr3L 10222827 10222874 6 104 0.5 0.5 0.5 4.0 152 chr3L 10222722 intron scramb1 - chr3L 10222798 intron scramb1 - chr3L 10222874 intron scramb1 - chr3L_6_10220001 chr3L_10220001 D20-c5 850 chr3L 10245623 10245673 chr3L 10245795 10245845 9 171 1.5 2.5 2.0 3.0 222 chr3L 10245623 intergenic not near genes chr3L 10245734 intergenic not near genes chr3L 10245845 intergenic not near genes chr3L_9_10245001 chr3L_10245001 D20-c5 851 chr3L 10298665 10298692 chr3L 10298777 10298804 7 112 0.0 2.0 1.0 3.5 139 chr3L 10298665 intergenic not near genes chr3L 10298734 intergenic not near genes chr3L 10298804 intergenic not near genes chr3L_7_10295001 chr3L_10295001 D20-c5 852 chr3L 10308720 10308766 chr3L 10308822 10308868 6 102 2.0 1.5 1.8 2.1 148 chr3L 10308720 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308868 intergenic not near genes chr3L_6_10305001 chr3L_10305001 D20-c5 853 chr3L 10383190 10383246 chr3L 10383314 10383354 7 122 0.5 1.5 1.0 3.5 164 chr3L 10383190 intergenic not near genes chr3L 10383272 intergenic not near genes chr3L 10383354 intergenic not near genes chr3L_7_10380001 chr3L_10380001 D20-c5 854 chr3L 10414924 10414956 chr3L 10417321 10417353 Doc 5 2397 2.5 2.0 2.2 1.6 2429 chr3L 10414924 intergenic CG12362 + chr3L 10416138 intergenic not near genes chr3L 10417353 intergenic not near genes chr3L_5_10415001 chr3L_10415001 D20-c5 855 chr3L 10417557 10417585 chr3L 10417659 10417687 9 100 2.5 3.5 3.0 2.2 130 chr3L 10417557 intergenic not near genes chr3L 10417622 intergenic not near genes chr3L 10417687 intergenic not near genes chr3L_9_10415001 chr3L_10415001 D20-c5 856 chr3L 10473788 10473843 chr3L 10473889 10473954 6 109 1.5 0.0 0.8 3.3 166 chr3L 10473788 intergenic not near genes chr3L 10473871 intergenic not near genes chr3L 10473954 intergenic not near genes chr3L_6_10470001 chr3L_10470001 D20-c5 857 chr3L 10762811 10762863 chr3L 10762920 10762972 12 108 1.5 4.5 3.0 3.0 161 chr3L 10762811 intergenic not near genes chr3L 10762892 intergenic not near genes chr3L 10762972 intergenic not near genes chr3L_12_10760001 chr3L_10760001 D20-c5 858 chr3L 10942044 10942067 chr3L 10942142 10942175 7 106 4.0 2.0 3.0 1.8 131 chr3L 10942044 intergenic not near genes chr3L 10942110 intergenic not near genes chr3L 10942175 intergenic not near genes chr3L_7_10940001 chr3L_10940001 D20-c5 859 chr3L 10956433 10956468 chr3L 10956569 10956611 7 141 0.0 2.0 1.0 3.5 178 chr3L 10956433 intergenic not near genes chr3L 10956522 intergenic not near genes chr3L 10956611 intergenic not near genes chr3L_7_10955001 chr3L_10955001 D20-c5 860 chr3L 11245061 11245114 chr3L 11245178 11245223 12 116 2.0 0.5 1.2 5.5 162 chr3L 11245061 intergenic not near genes chr3L 11245142 intergenic not near genes chr3L 11245223 intergenic not near genes chr3L_12_11245001 chr3L_11245001 D20-c5 861 chr3L 11259446 11259482 chr3L 11259553 11259589 6 107 1.5 3.5 2.5 1.7 143 chr3L 11259446 intergenic not near genes chr3L 11259518 intergenic not near genes chr3L 11259589 intergenic not near genes chr3L_6_11255001 chr3L_11255001 D20-c5 862 chr3L 11264442 11264491 chr3L 11271419 11271468 17.6 14 6977 4.5 3.0 3.8 2.9 7026 chr3L 11264442 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271468 intergenic not near genes chr3L_14_11265001 chr3L_11265001 D20-c5 863 chr3L 11285187 11285229 chr3L 11285363 11285406 4 176 0.5 0.0 0.2 3.3 219 chr3L 11285187 intergenic CR45404 + chr3L 11285296 intergenic CR45404 + chr3L 11285406 intergenic CR45404 + chr3L_4_11285001 chr3L_11285001 D20-c5 864 chr3L 11290608 11290656 chr3L 11290950 11291004 7 344 1.0 1.0 1.0 3.5 396 chr3L 11290608 intron CG6175 - chr3L 11290806 intron CG6175 - chr3L 11291004 intron CG6175 - chr3L_7_11290001 chr3L_11290001 D20-c5 865 chr3L 11329694 11329723 chr3L 11332908 11332953 jockey 7 3224 2.0 2.0 2.0 2.3 3259 chr3L 11329694 intergenic not near genes chr3L 11331324 intergenic not near genes chr3L 11332953 intergenic not near genes chr3L_7_11330001 chr3L_11330001 D20-c5 866 chr3L 11389451 11389480 chr3L 11389928 11389957 6 477 0.0 2.5 1.2 2.7 506 chr3L 11389451 intergenic not near genes chr3L 11389704 intergenic not near genes chr3L 11389957 intergenic not near genes chr3L_6_11385001 chr3L_11385001 D20-c5 867 chr3L 11579534 11579570 chr3L 11579665 11579701 4 131 1.5 1.0 1.2 1.8 167 chr3L 11579534 intergenic CG43390 - chr3L 11579618 intergenic CG43390 - chr3L 11579701 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 D20-c5 868 chr3L 11663085 11663137 chr3L 11663287 11663339 7 202 2.5 0.0 1.2 3.2 254 chr3L 11663085 intron CG32085 - chr3L 11663212 intron CG32085 - chr3L 11663339 intron CG32085 - chr3L_7_11660001 chr3L_11660001 D20-c5 869 chr3L 11678070 11678122 chr3L 11678182 11678234 9 111 0.5 0.0 0.2 7.5 164 chr3L 11678070 intron CG32085 - chr3L 11678152 intron CG32085 - chr3L 11678234 intron CG32085 - chr3L_9_11675001 chr3L_11675001 D20-c5 870 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028207 3.5 18.0 10.8 0.8 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 D20-c5 871 chr3L 11777678 11777678 chr3L 12163305 12163305 7 385627 19.0 14.0 16.5 0.4 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_7_11970001 chr3L_11970001 D20-c5 872 chr3L 11826541 11826587 chr3L 11826674 11826712 5 131 1.5 1.0 1.2 2.3 171 chr3L 11826541 intergenic CycA - chr3L 11826626 intergenic CycA - chr3L 11826712 intergenic CycA - chr3L_5_11825001 chr3L_11825001 D20-c5 873 chr3L 11884127 11884171 chr3L 11884317 11884368 5 190 3.0 0.0 1.5 2.0 241 chr3L 11884127 intron CG44837 - chr3L 11884248 intron CG44837 - chr3L 11884368 intron CG44837 - chr3L_5_11880001 chr3L_11880001 D20-c5 874 chr3L 11887245 11887269 chr3L 11887365 11887395 5 122 4.0 0.0 2.0 1.7 150 chr3L 11887245 intron CG44837 - chr3L 11887320 intron,3` UTR CG44837 -,CG5897 - chr3L 11887395 intron,3` UTR CG44837 -,CG5897 - chr3L_5_11885001 chr3L_11885001 D20-c5 875 chr3L 11943471 11943521 chr3L 11943597 11943646 5 125 0.5 2.0 1.2 2.3 175 chr3L 11943471 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943646 3` UTR CG5883 - chr3L_5_11940001 chr3L_11940001 D20-c5 876 chr3L 11961178 11961216 chr3L 11961306 11961345 8 128 5.5 5.5 5.5 1.2 167 chr3L 11961178 exon prc - chr3L 11961262 exon prc - chr3L 11961345 exon prc - chr3L_8_11960001 chr3L_11960001 D20-c5 877 chr3L 12013889 12013932 chr3L 12014003 12014048 10 114 1.5 1.5 1.5 4.0 159 chr3L 12013889 intron rols - chr3L 12013968 intron rols - chr3L 12014048 intron rols - chr3L_10_12010001 chr3L_12010001 D20-c5 878 chr3L 12089059 12089105 chr3L 12089164 12089210 5 105 2.0 2.0 2.0 1.7 151 chr3L 12089059 exon CG17154 + chr3L 12089134 3` UTR CG17154 + chr3L 12089210 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 D20-c5 879 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 19.0 14.0 16.5 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 D20-c5 880 chr3L 12223849 12223905 chr3L 12223950 12224007 9 101 5.0 3.0 4.0 1.8 158 chr3L 12223849 intron app - chr3L 12223928 intron app - chr3L 12224007 intron app - chr3L_9_12220001 chr3L_12220001 D20-c5 881 chr3L 12249576 12249582 chr3L 12249709 12249715 4 133 8.0 3.5 5.8 0.6 139 chr3L 12249576 intron app - chr3L 12249646 intron app - chr3L 12249715 intron app - chr3L_4_12245001 chr3L_12245001 D20-c5 882 chr3L 12261191 12261215 chr3L 12261317 12261342 6 126 3.0 5.5 4.2 1.2 151 chr3L 12261191 intron app - chr3L 12261266 intron app - chr3L 12261342 intron app - chr3L_6_12260001 chr3L_12260001 D20-c5 883 chr3L 12356947 12356980 chr3L 12357267 12357301 6 321 10.5 2.0 6.2 0.8 354 chr3L 12356947 intergenic not near genes chr3L 12357124 intergenic not near genes chr3L 12357301 intergenic not near genes chr3L_6_12355001 chr3L_12355001 D20-c5 884 chr3L 12412717 12412909 chr3L 12412827 12413016 8 109 3.0 2.5 2.8 2.1 299 chr3L 12412717 intron CG32103 - chr3L 12412866 intron CG32103 - chr3L 12413016 intron CG32103 - chr3L_8_12410001 chr3L_12410001 D20-c5 885 chr3L 12446253 12446285 chr3L 12446354 12446359 10 94 3.5 2.5 3.0 2.5 106 chr3L 12446253 intergenic not near genes chr3L 12446306 intergenic not near genes chr3L 12446359 intergenic not near genes chr3L_10_12445001 chr3L_12445001 D20-c5 886 chr3L 12539172 12539198 chr3L 12539280 12539307 4 108 2.0 2.0 2.0 1.3 135 chr3L 12539172 intron sowah - chr3L 12539240 intron sowah - chr3L 12539307 intron sowah - chr3L_4_12535001 chr3L_12535001 D20-c5 887 chr3L 12591607 12591629 chr3L 12591709 12591731 8 100 6.0 3.5 4.8 1.4 124 chr3L 12591607 intron ara + chr3L 12591669 intron ara + chr3L 12591731 intron ara + chr3L_8_12590001 chr3L_12590001 D20-c5 888 chr3L 12610979 12611025 chr3L 12611250 12611296 6 271 0.5 1.5 1.0 3.0 317 chr3L 12610979 intron caup + chr3L 12611138 intron caup + chr3L 12611296 intron caup + chr3L_6_12610001 chr3L_12610001 D20-c5 889 chr3L 12620957 12620982 chr3L 12621079 12621105 4 122 2.0 2.0 2.0 1.3 148 chr3L 12620957 3` UTR caup + chr3L 12621031 3` UTR caup + chr3L 12621105 3` UTR caup + chr3L_4_12620001 chr3L_12620001 D20-c5 890 chr3L 12631875 12631895 chr3L 12632110 12632129 5 234 2.0 2.0 2.0 1.7 254 chr3L 12631875 intron CR32111 + chr3L 12632002 intron CR32111 + chr3L 12632129 intron CR32111 + chr3L_5_12630001 chr3L_12630001 D20-c5 891 chr3L 12647930 12647971 chr3L 12648030 12648071 4 100 3.0 1.5 2.2 1.2 141 chr3L 12647930 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648071 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 D20-c5 892 chr3L 12801953 12802013 chr3L 12802054 12802114 7 101 1.5 2.5 2.0 2.3 161 chr3L 12801953 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802114 intron Atg1 - chr3L_7_12800001 chr3L_12800001 D20-c5 893 chr3L 12869527 12869568 chr3L 12869645 12869683 6 117 1.0 5.5 3.2 1.4 156 chr3L 12869527 intergenic not near genes chr3L 12869605 intergenic not near genes chr3L 12869683 intergenic not near genes chr3L_6_12865001 chr3L_12865001 D20-c5 894 chr3L 12919257 12919273 chr3L 12924750 12924771 Rt1c 4 5497 5.5 3.5 4.5 0.7 5514 chr3L 12919257 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924771 intergenic not near genes chr3L_4_12920001 chr3L_12920001 D20-c5 895 chr3L 12957767 12957791 chr3L 12962270 12962298 copia 5 4506 1.5 3.0 2.2 1.6 4531 chr3L 12957767 intergenic not near genes chr3L 12960032 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_5_12960001 chr3L_12960001 D20-c5 896 chr3L 12978513 12978758 chr3L 12978620 12978862 6 106 0.0 2.5 1.2 2.7 349 chr3L 12978513 intergenic not near genes chr3L 12978688 intergenic not near genes chr3L 12978862 intergenic not near genes chr3L_6_12975001 chr3L_12975001 D20-c5 897 chr3L 12980504 12980544 chr3L 12980608 12980634 7 108 1.5 0.0 0.8 3.9 130 chr3L 12980504 intergenic not near genes chr3L 12980569 intergenic not near genes chr3L 12980634 intergenic not near genes chr3L_7_12980001 chr3L_12980001 D20-c5 898 chr3L 13076957 13076972 chr3L 13077192 13077207 4 236 1.5 3.5 2.5 1.1 250 chr3L 13076957 intergenic not near genes chr3L 13077082 intergenic not near genes chr3L 13077207 intergenic not near genes chr3L_4_13075001 chr3L_13075001 D20-c5 899 chr3L 13123617 13123649 chr3L 13123717 13123748 4 98 2.0 2.5 2.2 1.2 131 chr3L 13123617 intergenic not near genes chr3L 13123682 intergenic not near genes chr3L 13123748 intergenic not near genes chr3L_4_13120001 chr3L_13120001 D20-c5 900 chr3L 13206210 13206250 chr3L 13206316 13206357 11 107 3.0 1.0 2.0 3.7 147 chr3L 13206210 intergenic not near genes chr3L 13206284 intergenic not near genes chr3L 13206357 intergenic not near genes chr3L_11_13205001 chr3L_13205001 D20-c5 901 chr3L 13235745 13235765 chr3L 13235843 13235874 5 107 1.0 2.5 1.8 1.8 129 chr3L 13235745 intron caps + chr3L 13235810 intron caps + chr3L 13235874 intron caps + chr3L_5_13235001 chr3L_13235001 D20-c5 902 chr3L 13296516 13296538 chr3L 13296632 13296651 4 115 2.5 2.0 2.2 1.2 135 chr3L 13296516 intergenic Sfp70A4 -,CR45253 + chr3L 13296584 3` UTR Sfp70A4 - chr3L 13296651 3` UTR Sfp70A4 - chr3L_4_13295001 chr3L_13295001 D20-c5 903 chr3L 13320586 13320633 chr3L 13320701 13320749 6 115 2.5 4.5 3.5 1.3 163 chr3L 13320586 intergenic not near genes chr3L 13320668 intergenic not near genes chr3L 13320749 intergenic not near genes chr3L_6_13320001 chr3L_13320001 D20-c5 904 chr3L 13338003 13338296 chr3L 13338123 13338402 4 117 4.0 3.0 3.5 0.9 399 chr3L 13338003 intergenic not near genes chr3L 13338202 intergenic not near genes chr3L 13338402 intergenic not near genes chr3L_4_13335001 chr3L_13335001 D20-c5 905 chr3L 13372925 13372958 chr3L 13373038 13373070 9 112 0.5 3.0 1.8 3.2 145 chr3L 13372925 intergenic not near genes chr3L 13372998 intergenic not near genes chr3L 13373070 intergenic not near genes chr3L_9_13370001 chr3L_13370001 D20-c5 906 chr3L 13452647 13452684 chr3L 13452759 13452797 4 113 0.0 3.0 1.5 1.6 150 chr3L 13452647 intron CG10738 + chr3L 13452722 intron CG10738 + chr3L 13452797 intron CG10738 + chr3L_4_13450001 chr3L_13450001 D20-c5 907 chr3L 13525136 13525183 chr3L 13532957 13533004 roo 5 7821 2.0 1.0 1.5 2.0 7868 chr3L 13525136 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13533004 intergenic not near genes chr3L_5_13525001 chr3L_13525001 D20-c5 908 chr3L 13692563 13692614 chr3L 13692664 13692690 4 95 3.0 4.5 3.8 0.8 127 chr3L 13692563 intron bru-3 - chr3L 13692626 intron bru-3 - chr3L 13692690 intron bru-3 - chr3L_4_13690001 chr3L_13690001 D20-c5 909 chr3L 13804532 13804570 chr3L 13822842 13822881 roo 4 18311 2.5 1.5 2.0 1.3 18349 chr3L 13804532 intergenic not near genes chr3L 13813706 intergenic not near genes chr3L 13822881 intergenic not near genes chr3L_4_13810001 chr3L_13810001 D20-c5 910 chr3L 13828674 13828714 chr3L 13828775 13828815 5 101 2.0 0.0 1.0 2.5 141 chr3L 13828674 intergenic not near genes chr3L 13828744 intergenic not near genes chr3L 13828815 intergenic not near genes chr3L_5_13825001 chr3L_13825001 D20-c5 911 chr3L 13920425 13920433 chr3L 13920530 13920537 4 105 2.5 3.5 3.0 1.0 112 chr3L 13920425 intron Rgl - chr3L 13920481 intron Rgl - chr3L 13920537 intron Rgl - chr3L_4_13920001 chr3L_13920001 D20-c5 912 chr3L 14004423 14004456 chr3L 14004523 14004560 5 103 3.0 2.5 2.8 1.3 137 chr3L 14004423 intron upSET + chr3L 14004492 intron upSET + chr3L 14004560 intron upSET + chr3L_5_14000001 chr3L_14000001 D20-c5 913 chr3L 14036653 14036697 chr3L 14036771 14036815 8 117 1.5 1.5 1.5 3.2 162 chr3L 14036653 3` UTR,exon pncr014:3L -,CG6661 + chr3L 14036734 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036815 3` UTR pncr014:3L - chr3L_8_14035001 chr3L_14035001 D20-c5 914 chr3L 14047509 14047553 chr3L 14096974 14097012 7 49460 21.0 15.0 18.0 0.4 49503 chr3L 14047509 exon blue - chr3L 14072260 exon Pex1 + chr3L 14097012 exon Fbp1 - chr3L_7_14070001 chr3L_14070001 D20-c5 915 chr3L 14126206 14126232 chr3L 14126315 14126338 5 105 2.5 2.5 2.5 1.4 132 chr3L 14126206 intron Sox21b - chr3L 14126272 intron Sox21b - chr3L 14126338 intron Sox21b - chr3L_5_14125001 chr3L_14125001 D20-c5 916 chr3L 14245546 14245579 chr3L 14245665 14245683 4 115 5.5 1.0 3.2 1.0 137 chr3L 14245546 3` UTR CR44561 - chr3L 14245614 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 D20-c5 917 chr3L 14282562 14282605 chr3L 14282667 14282709 8 105 3.0 4.0 3.5 1.8 147 chr3L 14282562 intron fz + chr3L 14282636 intron fz + chr3L 14282709 intron fz + chr3L_8_14280001 chr3L_14280001 D20-c5 918 chr3L 14287295 14287343 chr3L 14287411 14287457 5 115 0.0 2.0 1.0 2.5 162 chr3L 14287295 intron fz + chr3L 14287376 intron fz + chr3L 14287457 intron fz + chr3L_5_14285001 chr3L_14285001 D20-c5 919 chr3L 14295986 14296014 chr3L 14296477 14296519 roo 7 507 2.5 6.5 4.5 1.3 533 chr3L 14295986 intron fz + chr3L 14296252 intron fz + chr3L 14296519 intron fz + chr3L_7_14295001 chr3L_14295001 D20-c5 920 chr3L 14311999 14312042 chr3L 14316838 14316879 X-element 9 4838 2.0 4.5 3.2 2.1 4880 chr3L 14311999 exon fz + chr3L 14314439 intron fz + chr3L 14316879 intron fz + chr3L_9_14310001 chr3L_14310001 D20-c5 921 chr3L 14331440 14331483 chr3L 14331548 14331591 5 108 4.0 1.5 2.8 1.3 151 chr3L 14331440 intron fz + chr3L 14331516 intron fz + chr3L 14331591 intron fz + chr3L_5_14330001 chr3L_14330001 D20-c5 922 chr3L 14429426 14429466 chr3L 14429527 14429567 6 101 2.0 3.0 2.5 1.7 141 chr3L 14429426 intron bbg - chr3L 14429496 intron bbg - chr3L 14429567 intron bbg - chr3L_6_14425001 chr3L_14425001 D20-c5 923 chr3L 14437868 14437908 chr3L 14437987 14438027 4 118 2.5 1.5 2.0 1.3 159 chr3L 14437868 intron bbg - chr3L 14437948 intron bbg - chr3L 14438027 intron bbg - chr3L_4_14435001 chr3L_14435001 D20-c5 924 chr3L 14468449 14468467 chr3L 14473679 14473698 copia 4 5230 2.0 3.5 2.8 1.1 5249 chr3L 14468449 intron bbg - chr3L 14471074 intron bbg - chr3L 14473698 intron bbg - chr3L_4_14470001 chr3L_14470001 D20-c5 925 chr3L 14522088 14522130 chr3L 14522212 14522254 6 124 1.0 1.0 1.0 3.0 166 chr3L 14522088 intron bbg - chr3L 14522171 intron bbg - chr3L 14522254 intron bbg - chr3L_6_14520001 chr3L_14520001 D20-c5 926 chr3L 14565755 14565761 chr3L 14565871 14565877 4 116 1.0 1.0 1.0 2.0 122 chr3L 14565755 intergenic not near genes chr3L 14565816 intergenic not near genes chr3L 14565877 intergenic not near genes chr3L_4_14565001 chr3L_14565001 D20-c5 927 chr3L 14591055 14591104 chr3L 14591156 14591191 13 98 4.0 3.5 3.8 2.7 136 chr3L 14591055 intron HGTX - chr3L 14591123 intron HGTX - chr3L 14591191 intron HGTX - chr3L_13_14590001 chr3L_14590001 D20-c5 928 chr3L 14721163 14721203 chr3L 14723031 14723068 Rt1c 14 1866 4.0 1.5 2.8 3.7 1905 chr3L 14721163 intron ome + chr3L 14722116 intron ome + chr3L 14723068 intron ome + chr3L_14_14720001 chr3L_14720001 D20-c5 929 chr3L 14729490 14729533 chr3L 14729628 14729671 4 136 1.5 0.0 0.8 2.2 181 chr3L 14729490 intron ome + chr3L 14729580 intron ome + chr3L 14729671 intron ome + chr3L_4_14725001 chr3L_14725001 D20-c5 930 chr3L 14731293 14731343 chr3L 14731736 14731786 11 443 3.5 1.5 2.5 3.1 493 chr3L 14731293 intron ome + chr3L 14731540 intron ome + chr3L 14731786 intron ome + chr3L_11_14730001 chr3L_14730001 D20-c5 931 chr3L 15085032 15085082 chr3L 15086223 15086273 1360 6 1187 1.0 3.0 2.0 2.0 1241 chr3L 15085032 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086273 intron cp309 - chr3L_6_15085001 chr3L_15085001 D20-c5 932 chr3L 15151219 15151241 chr3L 15151428 15151439 4 206 0.5 4.5 2.5 1.1 220 chr3L 15151219 intron FucTA + chr3L 15151329 intron FucTA + chr3L 15151439 intron FucTA + chr3L_4_15150001 chr3L_15150001 D20-c5 933 chr3L 15209053 15209072 chr3L 15209164 15209183 4 111 2.5 0.0 1.2 1.8 130 chr3L 15209053 intergenic CG6888 + chr3L 15209118 intergenic not near genes chr3L 15209183 intergenic not near genes chr3L_4_15205001 chr3L_15205001 D20-c5 934 chr3L 15219748 15219772 chr3L 15219855 15219863 6 104 0.5 5.5 3.0 1.5 115 chr3L 15219748 intergenic not near genes chr3L 15219806 intergenic not near genes chr3L 15219863 intergenic not near genes chr3L_6_15215001 chr3L_15215001 D20-c5 935 chr3L 15295745 15295798 chr3L 15298611 15298666 gypsy5 7 2866 2.0 2.0 2.0 2.3 2921 chr3L 15295745 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298666 intergenic Best4 + chr3L_7_15295001 chr3L_15295001 D20-c5 936 chr3L 15384932 15384986 chr3L 15385085 15385139 7 153 1.5 2.5 2.0 2.3 207 chr3L 15384932 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385139 intergenic not near genes chr3L_7_15385001 chr3L_15385001 D20-c5 937 chr3L 15423742 15423784 chr3L 15426611 15426651 opus 6 2869 1.5 0.5 1.0 3.0 2909 chr3L 15423742 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426651 intergenic not near genes chr3L_6_15425001 chr3L_15425001 D20-c5 938 chr3L 15436065 15436118 chr3L 15436205 15436258 7 140 2.5 1.0 1.8 2.5 193 chr3L 15436065 intergenic not near genes chr3L 15436162 intergenic not near genes chr3L 15436258 intergenic not near genes chr3L_7_15435001 chr3L_15435001 D20-c5 939 chr3L 15443568 15443608 chr3L 15443669 15443710 4 101 1.0 0.0 0.5 2.7 142 chr3L 15443568 intergenic not near genes chr3L 15443639 intergenic not near genes chr3L 15443710 intergenic not near genes chr3L_4_15440001 chr3L_15440001 D20-c5 940 chr3L 15466015 15466124 chr3L 15466119 15466245 6 111 0.0 0.0 0.0 6.0 230 chr3L 15466015 intergenic not near genes chr3L 15466130 intergenic not near genes chr3L 15466245 intergenic not near genes chr3L_6_15465001 chr3L_15465001 D20-c5 941 chr3L 15554902 15554944 chr3L 15556712 15556756 S-element 4 1812 0.5 1.0 0.8 2.2 1854 chr3L 15554902 intron AGO2 + chr3L 15555829 intron AGO2 + chr3L 15556756 intron AGO2 + chr3L_4_15555001 chr3L_15555001 D20-c5 942 chr3L 15633160 15633190 chr3L 15633265 15633293 7 105 2.0 0.0 1.0 3.5 133 chr3L 15633160 intron comm3 - chr3L 15633226 intron comm3 - chr3L 15633293 intron comm3 - chr3L_7_15630001 chr3L_15630001 D20-c5 943 chr3L 15679361 15679413 chr3L 15679546 15679597 7 185 0.5 0.5 0.5 4.7 236 chr3L 15679361 intergenic CG7304 + chr3L 15679479 intergenic CG7304 + chr3L 15679597 intergenic CG7304 + chr3L_7_15675001 chr3L_15675001 D20-c5 944 chr3L 15742939 15742963 chr3L 15743125 15743148 4 182 3.0 0.0 1.5 1.6 209 chr3L 15742939 intergenic not near genes chr3L 15743044 intergenic not near genes chr3L 15743148 intergenic not near genes chr3L_4_15740001 chr3L_15740001 D20-c5 945 chr3L 15769404 15769439 chr3L 15769494 15769545 5 102 3.0 3.0 3.0 1.2 141 chr3L 15769404 intergenic not near genes chr3L 15769474 intergenic not near genes chr3L 15769545 intergenic not near genes chr3L_5_15765001 chr3L_15765001 D20-c5 946 chr3L 15887256 15887296 chr3L 15887357 15887396 11 101 1.5 0.5 1.0 5.5 140 chr3L 15887256 intron pHCl - chr3L 15887326 intron pHCl - chr3L 15887396 intron pHCl - chr3L_11_15885001 chr3L_15885001 D20-c5 947 chr3L 15897040 15897091 chr3L 15897186 15897223 8 144 3.0 2.0 2.5 2.3 183 chr3L 15897040 intron pHCl - chr3L 15897132 intron pHCl - chr3L 15897223 intron pHCl - chr3L_8_15895001 chr3L_15895001 D20-c5 948 chr3L 15899212 15899243 chr3L 15899803 15899835 jockey 4 592 4.0 2.5 3.2 1.0 623 chr3L 15899212 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899835 intergenic sff - chr3L_4_15895001 chr3L_15895001 D20-c5 949 chr3L 15939827 15939881 chr3L 15939928 15939982 9 99 1.5 3.5 2.5 2.6 155 chr3L 15939827 intron Pka-C3 - chr3L 15939904 intron Pka-C3 - chr3L 15939982 intron Pka-C3 - chr3L_9_15935001 chr3L_15935001 D20-c5 950 chr3L 15968199 15968244 chr3L 15968304 15968349 14 107 3.5 4.0 3.8 2.9 150 chr3L 15968199 intergenic CG10516 +,l(3)72Ab - chr3L 15968274 5` UTR CG10516 + chr3L 15968349 5` UTR CG10516 + chr3L_14_15965001 chr3L_15965001 D20-c5 951 chr3L 16027230 16027276 chr3L 16027343 16027389 5 111 2.5 1.0 1.8 1.8 159 chr3L 16027230 intron Notum + chr3L 16027310 intron Notum + chr3L 16027389 intron Notum + chr3L_5_16025001 chr3L_16025001 D20-c5 952 chr3L 16162588 16162624 chr3L 16162681 16162733 6 106 1.5 1.0 1.2 2.7 145 chr3L 16162588 intron CG5151 - chr3L 16162660 intron CG5151 - chr3L 16162733 intron CG5151 - chr3L_6_16160001 chr3L_16160001 D20-c5 953 chr3L 16184091 16184134 chr3L 16188935 16188978 X-element 4 4844 1.0 2.0 1.5 1.6 4887 chr3L 16184091 intergenic not near genes chr3L 16186534 intergenic not near genes chr3L 16188978 intergenic not near genes chr3L_4_16185001 chr3L_16185001 D20-c5 954 chr3L 16212788 16212832 chr3L 16212904 16212948 6 114 0.5 0.0 0.2 5.0 160 chr3L 16212788 intergenic CG13073 - chr3L 16212868 intergenic CG13073 - chr3L 16212948 intergenic CG13073 - chr3L_6_16210001 chr3L_16210001 D20-c5 955 chr3L 16340239 16340282 chr3L 16340388 16340431 9 149 2.5 1.5 2.0 3.0 192 chr3L 16340239 intron CG4998 + chr3L 16340335 intron CG4998 + chr3L 16340431 intron CG4998 + chr3L_9_16340001 chr3L_16340001 D20-c5 956 chr3L 16366744 16366794 chr3L 16366911 16366961 15 164 4.0 2.5 3.2 3.6 217 chr3L 16366744 exon Cpr72Ec - chr3L 16366852 exon Cpr72Ec - chr3L 16366961 exon Cpr72Ec - chr3L_15_16365001 chr3L_16365001 D20-c5 957 chr3L 16443824 16443878 chr3L 16446189 16446224 Doc 7 2360 1.0 1.0 1.0 3.5 2400 chr3L 16443824 intron,intron CG33158 +,dsx-c73A - chr3L 16445024 intron,intron CG33158 +,dsx-c73A - chr3L 16446224 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 D20-c5 958 chr3L 16485597 16485637 chr3L 16485710 16485750 6 113 3.0 4.0 3.5 1.3 153 chr3L 16485597 exon CG33158 + chr3L 16485674 intron CG33158 + chr3L 16485750 intron CG33158 + chr3L_6_16485001 chr3L_16485001 D20-c5 959 chr3L 16493956 16494000 chr3L 16494498 16494541 jockey 10 540 7.0 2.5 4.8 1.7 585 chr3L 16493956 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494541 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_10_16490001 chr3L_16490001 D20-c5 960 chr3L 16503623 16503657 chr3L 16503723 16503749 9 100 2.0 2.0 2.0 3.0 126 chr3L 16503623 intron CG43373 - chr3L 16503686 intron CG43373 - chr3L 16503749 intron CG43373 - chr3L_9_16500001 chr3L_16500001 D20-c5 961 chr3L 16540030 16540084 chr3L 16540143 16540197 5 113 1.5 1.5 1.5 2.0 167 chr3L 16540030 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540197 intron CG43373 - chr3L_5_16540001 chr3L_16540001 D20-c5 962 chr3L 16616485 16616533 chr3L 16621838 16621883 297 6 5351 1.5 1.5 1.5 2.4 5398 chr3L 16616485 3` UTR Abl - chr3L 16619184 3` UTR Abl - chr3L 16621883 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 D20-c5 963 chr3L 16632225 16632252 chr3L 16632434 16632463 7 209 3.0 1.5 2.2 2.2 238 chr3L 16632225 intron Abl - chr3L 16632344 intron Abl - chr3L 16632463 intron Abl - chr3L_7_16630001 chr3L_16630001 D20-c5 964 chr3L 16808029 16808045 chr3L 16808130 16808130 5 98 2.0 0.0 1.0 2.5 101 chr3L 16808029 intron nudC + chr3L 16808080 intron nudC + chr3L 16808130 intron nudC + chr3L_5_16805001 chr3L_16805001 D20-c5 965 chr3L 16817856 16817903 chr3L 16818021 16818068 11 164 2.5 4.0 3.2 2.6 212 chr3L 16817856 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818068 intron,intron nudC +,CG13024 - chr3L_11_16815001 chr3L_16815001 D20-c5 966 chr3L 16845003 16845041 chr3L 16845141 16845179 4 137 3.0 2.0 2.5 1.1 176 chr3L 16845003 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845091 intergenic CG9669 -,CG9715 + chr3L 16845179 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 D20-c5 967 chr3L 16873334 16873360 chr3L 16873454 16873490 7 127 1.0 2.0 1.5 2.8 156 chr3L 16873334 intron Lmpt + chr3L 16873412 intron Lmpt + chr3L 16873490 intron Lmpt + chr3L_7_16870001 chr3L_16870001 D20-c5 968 chr3L 16913654 16913696 chr3L 16913759 16913800 6 105 1.0 1.0 1.0 3.0 146 chr3L 16913654 intron Lmpt + chr3L 16913727 intron Lmpt + chr3L 16913800 intron Lmpt + chr3L_6_16910001 chr3L_16910001 D20-c5 969 chr3L 16941384 16941407 chr3L 16941509 16941532 5 126 3.5 0.0 1.8 1.8 148 chr3L 16941384 intron Cpr73D - chr3L 16941458 intron Cpr73D - chr3L 16941532 intron Cpr73D - chr3L_5_16940001 chr3L_16940001 D20-c5 970 chr3L 16945712 16945758 chr3L 16954890 16954933 roo 10 9176 2.5 2.0 2.2 3.1 9221 chr3L 16945712 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954933 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 D20-c5 971 chr3L 17084980 17085009 chr3L 17094154 17094183 roo 8 9174 6.5 4.0 5.2 1.3 9203 chr3L 17084980 intron Rbp6 - chr3L 17089582 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 D20-c5 972 chr3L 17282971 17283023 chr3L 17283083 17283136 9 111 2.0 3.5 2.8 2.4 165 chr3L 17282971 intergenic not near genes chr3L 17283054 intergenic not near genes chr3L 17283136 intergenic not near genes chr3L_9_17280001 chr3L_17280001 D20-c5 973 chr3L 17442656 17442693 chr3L 17464693 17464735 10 22041 1.5 1.0 1.2 4.5 22079 chr3L 17442656 intron CG18265 + chr3L 17453696 3` UTR CG18265 + chr3L 17464735 intergenic not near genes chr3L_10_17450001 chr3L_17450001 D20-c5 974 chr3L 17516960 17516999 chr3L 17524543 17524582 412 5 7583 2.5 2.0 2.2 1.6 7622 chr3L 17516960 intron CG7564 + chr3L 17520771 intron CG7564 + chr3L 17524582 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 D20-c5 975 chr3L 17730836 17730874 chr3L 17738191 17738229 mdg1 6 7354 0.5 2.0 1.2 2.7 7393 chr3L 17730836 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738229 intron Ccn + chr3L_6_17730001 chr3L_17730001 D20-c5 976 chr3L 17836193 17836237 chr3L 17836295 17836339 6 98 1.5 1.5 1.5 2.4 146 chr3L 17836193 intron Grd + chr3L 17836266 intron Grd + chr3L 17836339 intron Grd + chr3L_6_17835001 chr3L_17835001 D20-c5 977 chr3L 17957041 17957080 chr3L 17957151 17957195 11 113 3.0 2.0 2.5 3.1 154 chr3L 17957041 intron Eip75B - chr3L 17957118 intron Eip75B - chr3L 17957195 intron Eip75B - chr3L_11_17955001 chr3L_17955001 D20-c5 978 chr3L 17968116 17968165 chr3L 17968222 17968271 5 106 2.0 0.5 1.2 2.3 155 chr3L 17968116 intron Eip75B - chr3L 17968194 intron Eip75B - chr3L 17968271 intron Eip75B - chr3L_5_17965001 chr3L_17965001 D20-c5 979 chr3L 18119622 18119675 chr3L 18119759 18119798 5 128 0.0 3.0 1.5 2.0 176 chr3L 18119622 intron CG7341 + chr3L 18119710 intron CG7341 + chr3L 18119798 5` UTR CG7341 + chr3L_5_18115001 chr3L_18115001 D20-c5 980 chr3L 18160865 18160901 chr3L 18160979 18161014 4 114 1.5 1.0 1.2 1.8 149 chr3L 18160865 intron CG13699 - chr3L 18160940 intron CG13699 - chr3L 18161014 intron CG13699 - chr3L_4_18160001 chr3L_18160001 D20-c5 981 chr3L 18163963 18164229 chr3L 18164190 18164419 6 221 0.0 0.0 0.0 6.0 456 chr3L 18163963 intergenic not near genes chr3L 18164191 intergenic not near genes chr3L 18164419 intergenic not near genes chr3L_6_18160001 chr3L_18160001 D20-c5 982 chr3L 18200902 18200955 chr3L 18201318 18201360 6 412 0.0 3.0 1.5 2.4 458 chr3L 18200902 intergenic not near genes chr3L 18201131 intergenic CG7320 + chr3L 18201360 intergenic CG7320 + chr3L_6_18200001 chr3L_18200001 D20-c5 983 chr3L 18257116 18257163 chr3L 18257219 18257266 8 102 1.5 3.5 2.5 2.3 150 chr3L 18257116 intergenic not near genes chr3L 18257191 intergenic not near genes chr3L 18257266 intergenic not near genes chr3L_8_18255001 chr3L_18255001 D20-c5 984 chr3L 18408717 18408748 chr3L 18408825 18408859 5 107 1.5 1.0 1.2 2.3 142 chr3L 18408717 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408859 intergenic not near genes chr3L_5_18405001 chr3L_18405001 D20-c5 985 chr3L 9013689 9013692 chr3L 18417066 18417066 6 9403376 17.5 12.0 14.8 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 D20-c5 986 chr3L 18436078 18436088 chr3L 18436201 18436211 4 122 2.5 1.5 2.0 1.3 133 chr3L 18436078 intergenic not near genes chr3L 18436144 intergenic not near genes chr3L 18436211 intergenic not near genes chr3L_4_18435001 chr3L_18435001 D20-c5 987 chr3L 18448598 18448617 chr3L 18448715 18448734 4 117 1.5 2.0 1.8 1.4 136 chr3L 18448598 intergenic not near genes chr3L 18448666 intergenic not near genes chr3L 18448734 intergenic not near genes chr3L_4_18445001 chr3L_18445001 D20-c5 988 chr3L 18456269 18456298 chr3L 18456382 18456411 5 113 0.5 2.5 1.5 2.0 142 chr3L 18456269 intergenic CR44670 - chr3L 18456340 intergenic CR44670 - chr3L 18456411 3` UTR CR44670 - chr3L_5_18455001 chr3L_18455001 D20-c5 989 chr3L 18464466 18464515 chr3L 18464577 18464589 10 106 1.5 3.0 2.2 3.1 123 chr3L 18464466 intergenic not near genes chr3L 18464528 intergenic not near genes chr3L 18464589 intergenic not near genes chr3L_10_18460001 chr3L_18460001 D20-c5 990 chr3L 18479048 18479083 chr3L 18479175 18479209 4 127 1.5 0.5 1.0 2.0 161 chr3L 18479048 5` UTR CR44673 + chr3L 18479128 5` UTR CR44673 + chr3L 18479209 5` UTR CR44673 + chr3L_4_18475001 chr3L_18475001 D20-c5 991 chr3L 18546679 18546723 chr3L 18546798 18546842 6 116 4.0 4.5 4.2 1.2 163 chr3L 18546679 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546842 intergenic not near genes chr3L_6_18545001 chr3L_18545001 D20-c5 992 chr3L 18656164 18656213 chr3L 18656274 18656323 9 108 2.5 5.0 3.8 1.9 159 chr3L 18656164 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656323 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 D20-c5 993 chr3L 18657718 18657768 chr3L 18657882 18657929 9 164 2.0 3.0 2.5 2.6 211 chr3L 18657718 intron MYPT-75D + chr3L 18657824 intron MYPT-75D + chr3L 18657929 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 D20-c5 994 chr3L 18686946 18686988 chr3L 18687402 18687444 8 455 2.5 1.5 2.0 2.7 498 chr3L 18686946 intergenic not near genes chr3L 18687195 intergenic not near genes chr3L 18687444 intergenic not near genes chr3L_8_18685001 chr3L_18685001 D20-c5 995 chr3L 18696053 18696097 chr3L 18696197 18696225 5 140 4.0 2.0 3.0 1.2 172 chr3L 18696053 intergenic Dic4 -,CG6893 + chr3L 18696139 intergenic Dic4 -,CG6893 + chr3L 18696225 intergenic Dic4 - chr3L_5_18695001 chr3L_18695001 D20-c5 996 chr3L 18753529 18753555 chr3L 18753636 18753662 4 106 1.5 0.5 1.0 2.0 133 chr3L 18753529 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753662 intron ftz-f1 - chr3L_4_18750001 chr3L_18750001 D20-c5 997 chr3L 18861740 18861788 chr3L 18861857 18861906 8 117 4.0 2.0 3.0 2.0 166 chr3L 18861740 intergenic not near genes chr3L 18861823 intergenic not near genes chr3L 18861906 intergenic not near genes chr3L_8_18860001 chr3L_18860001 D20-c5 998 chr3L 18929960 18929983 chr3L 18930069 18930092 6 108 1.0 4.0 2.5 1.7 132 chr3L 18929960 intron CG32204 - chr3L 18930026 intron CG32204 - chr3L 18930092 exon CG32204 - chr3L_6_18930001 chr3L_18930001 D20-c5 999 chr3L 18933606 18933660 chr3L 18933724 18933778 6 115 0.0 2.0 1.0 3.0 172 chr3L 18933606 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933778 intron CG32204 - chr3L_6_18930001 chr3L_18930001 D20-c5 1000 chr3L 18941685 18941736 chr3L 18941803 18941854 11 113 3.0 2.0 2.5 3.1 169 chr3L 18941685 intron CG32204 - chr3L 18941770 intron CG32204 - chr3L 18941854 intron CG32204 - chr3L_11_18940001 chr3L_18940001 D20-c5 1001 chr3L 19008828 19008869 chr3L 19009190 19009230 jockey 5 362 1.0 3.5 2.2 1.6 402 chr3L 19008828 intron nkd - chr3L 19009029 intron nkd - chr3L 19009230 intron nkd - chr3L_5_19005001 chr3L_19005001 D20-c5 1002 chr3L 19111378 19111404 chr3L 19111488 19111513 4 110 5.5 4.5 5.0 0.7 135 chr3L 19111378 intron CG14082 - chr3L 19111446 intron CG14082 - chr3L 19111513 intron CG14082 - chr3L_4_19110001 chr3L_19110001 D20-c5 1003 chr3L 19117020 19117071 chr3L 19124492 19124542 mdg1 7 7471 3.5 0.5 2.0 2.3 7522 chr3L 19117020 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124542 intron CG14082 - chr3L_7_19120001 chr3L_19120001 D20-c5 1004 chr3L 19131316 19131354 chr3L 19132834 19132872 8 1519 20.0 18.0 19.0 0.4 1556 chr3L 19131316 intron CG14082 - chr3L 19132094 intron CG14082 - chr3L 19132872 intron CG14082 - chr3L_8_19130001 chr3L_19130001 D20-c5 1005 chr3L 19182361 19182418 chr3L 19182467 19182522 11 105 1.5 1.5 1.5 4.4 161 chr3L 19182361 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182522 intron fz2 - chr3L_11_19180001 chr3L_19180001 D20-c5 1006 chr3L 19208035 19208090 chr3L 19209434 19209489 Doc 9 1398 2.5 2.0 2.2 2.8 1454 chr3L 19208035 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209489 intron fz2 - chr3L_9_19205001 chr3L_19205001 D20-c5 1007 chr3L 19220632 19220634 chr3L 22908066 22908067 29 3687433 16.0 7.0 11.5 2.3 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_29_21060001 chr3L_21060001 D20-c5 1008 chr3L 19220635 19220637 chr3L 22908065 22908067 43 3687431 15.5 7.0 11.2 3.5 3687432 chr3L 19220635 intron fz2 - chr3L 21064351 intron siz + chr3L 22908067 intergenic not near genes chr3L_43_21060001 chr3L_21060001 D20-c5 1009 chr3L 19238381 19238419 chr3L 19238952 19238990 7 570 1.5 2.0 1.8 2.5 609 chr3L 19238381 intergenic not near genes chr3L 19238686 intergenic not near genes chr3L 19238990 intergenic not near genes chr3L_7_19235001 chr3L_19235001 D20-c5 1010 chr3L 19269800 19269847 chr3L 19270029 19270076 9 228 3.0 4.5 3.8 1.9 276 chr3L 19269800 intron,exon CG14085 +,CG14088 - chr3L 19269938 intron,exon CG14085 +,CG14088 - chr3L 19270076 intron,exon CG14085 +,CG14088 - chr3L_9_19265001 chr3L_19265001 D20-c5 1011 chr3L 19282240 19282277 chr3L 19282360 19282398 4 120 1.5 0.5 1.0 2.0 158 chr3L 19282240 3` UTR Gbs-76A - chr3L 19282319 3` UTR Gbs-76A - chr3L 19282398 3` UTR Gbs-76A - chr3L_4_19280001 chr3L_19280001 D20-c5 1012 chr3L 19417803 19417834 chr3L 19417908 19417939 5 105 2.0 2.5 2.2 1.6 136 chr3L 19417803 intergenic not near genes chr3L 19417871 intergenic not near genes chr3L 19417939 intergenic not near genes chr3L_5_19415001 chr3L_19415001 D20-c5 1013 chr3L 19426733 19426773 chr3L 19426826 19426872 10 97 3.5 4.5 4.0 2.0 139 chr3L 19426733 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426872 intergenic not near genes chr3L_10_19425001 chr3L_19425001 D20-c5 1014 chr3L 19434764 19434781 chr3L 19434868 19434885 4 104 2.5 1.5 2.0 1.3 121 chr3L 19434764 intergenic not near genes chr3L 19434824 intergenic not near genes chr3L 19434885 intergenic not near genes chr3L_4_19430001 chr3L_19430001 D20-c5 1015 chr3L 19630673 19630714 chr3L 19655431 19655472 5 24758 14.5 22.0 18.2 0.3 24799 chr3L 19630673 intron wnd - chr3L 19643072 intergenic CG8786 - chr3L 19655472 intron tey - chr3L_5_19640001 chr3L_19640001 D20-c5 1016 chr3L 19783432 19783456 chr3L 19783717 19783753 4 294 2.0 3.0 2.5 1.1 321 chr3L 19783432 intron,intron CG42637 -,Gyc76C - chr3L 19783592 intron,intron CG42637 -,Gyc76C - chr3L 19783753 intron,intron CG42637 -,Gyc76C - chr3L_4_19780001 chr3L_19780001 D20-c5 1017 chr3L 19848484 19848526 chr3L 19857699 19857741 roo 4 9215 2.5 2.5 2.5 1.1 9257 chr3L 19848484 intron Papss + chr3L 19853112 intron Papss + chr3L 19857741 intron Papss + chr3L_4_19850001 chr3L_19850001 D20-c5 1018 chr3L 19861797 19861853 chr3L 19863608 19863664 S-element 7 1812 0.5 0.0 0.2 5.8 1867 chr3L 19861797 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863664 intergenic not near genes chr3L_7_19860001 chr3L_19860001 D20-c5 1019 chr3L 19880659 19880694 chr3L 19885051 19885102 20 4395 32.5 30.0 31.2 0.6 4443 chr3L 19880659 exon CG8334 + chr3L 19882880 exon Mi-2 - chr3L 19885102 exon Mi-2 - chr3L_20_19880001 chr3L_19880001 D20-c5 1020 chr3L 19935438 19935469 chr3L 19937023 19937042 6 1583 1.5 5.0 3.2 1.4 1604 chr3L 19935438 intergenic not near genes chr3L 19936240 intergenic not near genes chr3L 19937042 intergenic not near genes chr3L_6_19935001 chr3L_19935001 D20-c5 1021 chr3L 20148272 20148314 chr3L 20148387 20148423 8 114 2.5 3.5 3.0 2.0 151 chr3L 20148272 intergenic not near genes chr3L 20148348 intergenic not near genes chr3L 20148423 intergenic not near genes chr3L_8_20145001 chr3L_20145001 D20-c5 1022 chr3L 20156145 20156188 chr3L 20156292 20156333 7 146 2.5 2.5 2.5 2.0 188 chr3L 20156145 intron CG42674 - chr3L 20156239 intron CG42674 - chr3L 20156333 intron CG42674 - chr3L_7_20155001 chr3L_20155001 D20-c5 1023 chr3L 20257320 20257356 chr3L 20258465 20258500 pogo 8 1145 0.0 1.0 0.5 5.3 1180 chr3L 20257320 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258500 intron rdgC + chr3L_8_20255001 chr3L_20255001 D20-c5 1024 chr3L 20283354 20283412 chr3L 20283459 20283517 15 102 2.0 2.5 2.2 4.7 163 chr3L 20283354 intron gogo - chr3L 20283436 intron gogo - chr3L 20283517 intron gogo - chr3L_15_20280001 chr3L_20280001 D20-c5 1025 chr3L 20487661 20487673 chr3L 20488137 20488149 INE-1 4 476 4.0 8.0 6.0 0.6 488 chr3L 20487661 intron ZnT77C - chr3L 20487905 intron ZnT77C - chr3L 20488149 exon ZnT77C - chr3L_4_20485001 chr3L_20485001 D20-c5 1026 chr3L 20525228 20525228 chr3L 22908066 22908067 15 2382838 6.5 7.0 6.8 1.9 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_15_21715001 chr3L_21715001 D20-c5 1027 chr3L 20525229 20525229 chr3L 22908066 22908067 7 2382838 6.5 7.0 6.8 0.9 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_7_21715001 chr3L_21715001 D20-c5 1028 chr3L 20525229 20525229 chr3L 24821494 24821494 4 4296265 6.5 6.0 6.2 0.6 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 D20-c5 1029 chr3L 20525230 20525230 chr3L 22908066 22908067 4 2382837 6.5 7.0 6.8 0.5 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 D20-c5 1030 chr3L 20590043 20590076 chr3L 20590607 20590639 412 11 564 3.5 1.5 2.5 3.1 596 chr3L 20590043 intergenic not near genes chr3L 20590341 intergenic not near genes chr3L 20590639 intergenic not near genes chr3L_11_20590001 chr3L_20590001 D20-c5 1031 chr3L 20821275 20821296 chr3L 20824768 20824790 NOF 6 3490 0.5 2.5 1.5 2.4 3515 chr3L 20821275 intron Pka-R1 + chr3L 20823032 intron Pka-R1 + chr3L 20824790 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 D20-c5 1032 chr3L 20913731 20913774 chr3L 20913837 20913879 8 106 2.5 2.5 2.5 2.3 148 chr3L 20913731 intergenic CR43930 - chr3L 20913805 intergenic CR43930 - chr3L 20913879 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 D20-c5 1033 chr3L 21014899 21014920 chr3L 21023405 21023426 Tirant 9 8505 5.5 2.0 3.8 1.9 8527 chr3L 21014899 intron skd - chr3L 21019162 intron skd - chr3L 21023426 intron skd - chr3L_9_21015001 chr3L_21015001 D20-c5 1034 chr3L 21014923 21014948 chr3L 21023404 21023454 Tirant 6 8500 2.5 2.0 2.2 1.9 8531 chr3L 21014923 intron skd - chr3L 21019188 intron skd - chr3L 21023454 intron skd - chr3L_6_21015001 chr3L_21015001 D20-c5 1035 chr3L 21029922 21029942 chr3L 21030030 21030050 4 108 6.5 3.5 5.0 0.7 128 chr3L 21029922 3` UTR CG10585 + chr3L 21029986 3` UTR CG10585 + chr3L 21030050 3` UTR CG10585 + chr3L_4_21025001 chr3L_21025001 D20-c5 1036 chr3L 21067958 21067971 chr3L 21068063 21068076 4 105 6.0 5.5 5.8 0.6 118 chr3L 21067958 intron siz + chr3L 21068017 intron siz + chr3L 21068076 intron siz + chr3L_4_21065001 chr3L_21065001 D20-c5 1037 chr3L 21151850 21151887 chr3L 21156959 21156996 flea 5 5107 2.5 1.5 2.0 1.7 5146 chr3L 21151850 intron Ac78C - chr3L 21154423 intron Ac78C - chr3L 21156996 intron Ac78C - chr3L_5_21150001 chr3L_21150001 D20-c5 1038 chr3L 21158593 21158614 chr3L 21158694 21158710 4 100 3.0 5.5 4.2 0.8 117 chr3L 21158593 intron Ac78C - chr3L 21158652 intron Ac78C - chr3L 21158710 intron Ac78C - chr3L_4_21155001 chr3L_21155001 D20-c5 1039 chr3L 21243726 21243751 chr3L 21251312 21251319 412 5 7583 3.0 3.0 3.0 1.2 7593 chr3L 21243726 intron Eip78C + chr3L 21247522 intron Eip78C + chr3L 21251319 intron Eip78C + chr3L_5_21245001 chr3L_21245001 D20-c5 1040 chr3L 21301727 21301765 chr3L 21301838 21301876 4 109 2.5 3.5 3.0 1.0 149 chr3L 21301727 5` UTR CR45432 + chr3L 21301802 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301876 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_4_21300001 chr3L_21300001 D20-c5 1041 chr3L 21306127 21306168 chr3L 21315311 21315352 roo 4 9182 0.5 1.5 1.0 2.0 9225 chr3L 21306127 3` UTR CG7632 + chr3L 21310740 intron Pc - chr3L 21315352 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 D20-c5 1042 chr3L 21319506 21319558 chr3L 21319621 21319673 7 112 0.5 1.5 1.0 3.5 167 chr3L 21319506 5` UTR Rab26 + chr3L 21319590 5` UTR Rab26 + chr3L 21319673 5` UTR Rab26 + chr3L_7_21315001 chr3L_21315001 D20-c5 1043 chr3L 21393224 21393258 chr3L 21393519 21393553 4 295 7.5 10.0 8.8 0.4 329 chr3L 21393224 intron rgn + chr3L 21393388 intron rgn + chr3L 21393553 intron rgn + chr3L_4_21390001 chr3L_21390001 D20-c5 1044 chr3L 21399433 21399444 chr3L 21399539 21399552 4 105 7.5 7.5 7.5 0.5 119 chr3L 21399433 intron rgn + chr3L 21399492 intron rgn + chr3L 21399552 intron rgn + chr3L_4_21395001 chr3L_21395001 D20-c5 1045 chr3L 21406970 21407021 chr3L 21407074 21407115 5 102 3.0 6.0 4.5 0.9 145 chr3L 21406970 intron rgn + chr3L 21407042 intron rgn + chr3L 21407115 intron rgn + chr3L_5_21405001 chr3L_21405001 D20-c5 1046 chr3L 21456752 21456796 chr3L 21456870 21456914 11 117 11.5 10.0 10.8 0.9 162 chr3L 21456752 intergenic not near genes chr3L 21456833 intergenic not near genes chr3L 21456914 intergenic not near genes chr3L_11_21455001 chr3L_21455001 D20-c5 1047 chr3L 21749310 21749341 chr3L 21754489 21754526 Doc 5 5182 4.0 6.5 5.2 0.8 5216 chr3L 21749310 intron Syn1 - chr3L 21751918 intron Syn1 - chr3L 21754526 intron Syn1 - chr3L_5_21750001 chr3L_21750001 D20-c5 1048 chr3L 21852242 21852260 chr3L 21852359 21852378 4 118 10.5 15.5 13.0 0.3 136 chr3L 21852242 intron mub + chr3L 21852310 intron mub + chr3L 21852378 intron mub + chr3L_4_21850001 chr3L_21850001 D20-c5 1049 chr3L 21852261 21852272 chr3L 21852354 21852390 6 104 9.0 14.5 11.8 0.5 129 chr3L 21852261 intron mub + chr3L 21852326 intron mub + chr3L 21852390 intron mub + chr3L_6_21850001 chr3L_21850001 D20-c5 1050 chr3L 21871544 21871590 chr3L 21871656 21871703 5 112 10.0 10.5 10.2 0.4 159 chr3L 21871544 intron mub + chr3L 21871624 intron mub + chr3L 21871703 intron mub + chr3L_5_21870001 chr3L_21870001 D20-c5 1051 chr3L 22099656 22099692 chr3L 22105867 22105903 3S18 4 6211 5.0 3.5 4.2 0.8 6247 chr3L 22099656 intergenic not near genes chr3L 22102780 intergenic not near genes chr3L 22105903 intergenic not near genes chr3L_4_22100001 chr3L_22100001 D20-c5 1052 chr3L 22361917 22361965 chr3L 22362019 22362065 8 100 1.0 1.0 1.0 4.0 148 chr3L 22361917 intron Ten-m - chr3L 22361991 intron Ten-m - chr3L 22362065 intron Ten-m - chr3L_8_22360001 chr3L_22360001 D20-c5 1053 chr3L 22395577 22395629 chr3L 22395685 22395737 4 108 4.5 5.5 5.0 0.7 160 chr3L 22395577 intron Ten-m - chr3L 22395657 intron Ten-m - chr3L 22395737 intron Ten-m - chr3L_4_22395001 chr3L_22395001 D20-c5 1054 chr3L 22411345 22411399 chr3L 22411447 22411455 13 97 10.0 14.5 12.2 1.0 110 chr3L 22411345 intergenic not near genes chr3L 22411400 intergenic not near genes chr3L 22411455 intergenic not near genes chr3L_13_22410001 chr3L_22410001 D20-c5 1055 chr3L 22507110 22507128 chr3L 22507222 22507222 4 108 11.5 6.5 9.0 0.4 112 chr3L 22507110 intergenic not near genes chr3L 22507166 intergenic not near genes chr3L 22507222 intergenic not near genes chr3L_4_22505001 chr3L_22505001 D20-c5 1056 chr3L 22577597 22577645 chr3L 22582410 22582448 Doc 11 4812 3.5 1.5 2.5 3.1 4851 chr3L 22577597 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582448 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 D20-c5 1057 chr3L 22617174 22617221 chr3L 22624651 22624697 blood 6 7477 6.5 6.5 6.5 0.8 7523 chr3L 22617174 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624697 intron CG14459 - chr3L_6_22620001 chr3L_22620001 D20-c5 1058 chr3L 22652314 22652342 chr3L 22652477 22652505 4 162 6.5 9.0 7.8 0.5 191 chr3L 22652314 exon CG33772 - chr3L 22652410 intron CG33772 - chr3L 22652505 exon CG33772 - chr3L_4_22650001 chr3L_22650001 D20-c5 1059 chr3L 22761393 22761411 chr3L 22766852 22766870 Ivk 4 5458 5.0 4.0 4.5 0.7 5477 chr3L 22761393 intron SPoCk + chr3L 22764132 intron SPoCk + chr3L 22766870 intron SPoCk + chr3L_4_22760001 chr3L_22760001 D20-c5 1060 chr3L 22853443 22853723 chr3L 22853555 22853834 6 112 5.0 7.0 6.0 0.9 391 chr3L 22853443 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853638 5` UTR CR43426 + chr3L 22853834 5` UTR CR43426 + chr3L_6_22850001 chr3L_22850001 D20-c5 1061 chr3L 19220633 19220637 chr3L 22908066 22908066 147 3687431 15.5 7.0 11.2 12.0 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_147_21060001 chr3L_21060001 D20-c5 1062 chr3L 19220633 19220637 chr3L 22908067 22908067 131 3687432 15.5 7.0 11.2 10.7 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_131_21060001 chr3L_21060001 D20-c5 1063 chr3L 20525228 20525230 chr3L 22908067 22908067 6 2382838 6.5 7.0 6.8 0.8 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 D20-c5 1064 chr3L 22989851 22989890 chr3L 22996849 22996889 297 5 6998 4.0 1.5 2.8 1.3 7038 chr3L 22989851 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996889 intergenic not near genes chr3L_5_22990001 chr3L_22990001 D20-c5 1065 chr3L 23042204 23042243 chr3L 23048980 23049016 gypsy6 5 6776 9.0 7.5 8.2 0.5 6812 chr3L 23042204 intergenic not near genes chr3L 23045610 intergenic not near genes chr3L 23049016 intergenic not near genes chr3L_5_23045001 chr3L_23045001 D20-c5 1066 chr3L 24168773 24168822 chr3L 24176126 24176175 ZAM 20 7352 4.5 6.5 5.5 3.1 7402 chr3L 24168773 intron Snap25 + chr3L 24172474 intron Snap25 + chr3L 24176175 intron Snap25 + chr3L_20_24170001 chr3L_24170001 D20-c5 1067 chr3L 20525228 20525230 chr3L 24821492 24821492 4 4296263 6.5 6.0 6.2 0.6 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_4_22670001 chr3L_22670001 D20-c5 1068 chr3L 20525228 20525229 chr3L 24821493 24821495 5 4296264 6.5 6.0 6.2 0.7 4296267 chr3L 20525228 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821495 intergenic not near genes chr3L_5_22670001 chr3L_22670001 D20-c5 1069 chr3L 25331623 25331644 chr3L 25331738 25331760 5 116 13.0 11.0 12.0 0.4 137 chr3L 25331623 intergenic not near genes chr3L 25331692 intergenic not near genes chr3L 25331760 intergenic not near genes chr3L_5_25330001 chr3L_25330001 D20-c5 1070 chr3L 27390440 27390711 chr3L 27390681 27390815 6 127 23.0 20.5 21.8 0.3 375 chr3L 27390440 intron Dbp80 + chr3L 27390628 intron Dbp80 + chr3L 27390815 intron Dbp80 + chr3L_6_27390001 chr3L_27390001 D20-c5 1071 chr3R 803360 803402 chr3R 803485 803535 5 131 5.5 6.5 6.0 0.7 175 chr3R 803360 intergenic not near genes chr3R 803448 intergenic not near genes chr3R 803535 intergenic not near genes chr3R_5_800001 chr3R_800001 D20-c5 1072 chr3R 2534112 2534158 chr3R 2541704 2541735 9 7591 17.5 17.5 17.5 0.5 7623 chr3R 2534112 intergenic not near genes chr3R 2537924 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_9_2535001 chr3R_2535001 D20-c5 1073 chr3R 4206069 4206093 chr3R 4211669 4211693 mdg3 4 5600 3.0 2.5 2.8 1.1 5624 chr3R 4206069 intron CG14636 - chr3R 4208881 intron CG14636 - chr3R 4211693 intron CG14636 - chr3R_4_4205001 chr3R_4205001 D20-c5 1074 chr3R 4887456 4887508 chr3R 4894858 4894904 rover 17 7401 3.5 2.5 3.0 4.2 7448 chr3R 4887456 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894904 intergenic not near genes chr3R_17_4890001 chr3R_4890001 D20-c5 1075 chr3R 4963498 4963538 chr3R 4964298 4964339 6 800 9.5 3.5 6.5 0.8 841 chr3R 4963498 intergenic not near genes chr3R 4963918 intergenic not near genes chr3R 4964339 intergenic not near genes chr3R_6_4960001 chr3R_4960001 D20-c5 1076 chr3R 5045822 5045873 chr3R 5052949 5053000 HMS-Beagle 7 7127 3.0 3.0 3.0 1.8 7178 chr3R 5045822 3` UTR CR43635 - chr3R 5049411 intergenic not near genes chr3R 5053000 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 D20-c5 1077 chr3R 5055760 5055793 chr3R 5055873 5055906 5 112 9.0 11.0 10.0 0.5 146 chr3R 5055760 intergenic not near genes chr3R 5055833 intergenic not near genes chr3R 5055906 intergenic not near genes chr3R_5_5055001 chr3R_5055001 D20-c5 1078 chr3R 5746013 5746038 chr3R 5746279 5746303 pogo 7 265 5.0 2.5 3.8 1.5 290 chr3R 5746013 3` UTR Madm + chr3R 5746158 3` UTR Madm + chr3R 5746303 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 D20-c5 1079 chr3R 5809090 5809131 chr3R 5809354 5809397 pogo 6 265 3.0 3.0 3.0 1.5 307 chr3R 5809090 3` UTR CG11000 + chr3R 5809244 3` UTR CG11000 + chr3R 5809397 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 D20-c5 1080 chr3R 5822360 5822396 chr3R 5823551 5823587 1360 9 1191 3.0 4.0 3.5 2.0 1227 chr3R 5822360 3` UTR CG2023 - chr3R 5822974 3` UTR CG2023 - chr3R 5823587 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 D20-c5 1081 chr3R 5846857 5846905 chr3R 5846958 5847006 8 101 0.5 0.5 0.5 5.3 149 chr3R 5846857 intergenic CG1213 +,CG14676 + chr3R 5846932 intergenic CG14676 +,CG1213 + chr3R 5847006 intergenic CG14676 +,CG1213 + chr3R_8_5845001 chr3R_5845001 D20-c5 1082 chr3R 5893153 5893186 chr3R 5893350 5893383 4 197 5.0 1.5 3.2 1.0 230 chr3R 5893153 intron CG34113 - chr3R 5893268 intron CG34113 - chr3R 5893383 intron CG34113 - chr3R_4_5890001 chr3R_5890001 D20-c5 1083 chr3R 5927544 5927584 chr3R 5927805 5927849 pogo 9 263 3.5 4.5 4.0 1.8 305 chr3R 5927544 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927849 intron CG34113 - chr3R_9_5925001 chr3R_5925001 D20-c5 1084 chr3R 5931445 5931452 chr3R 5931558 5931565 4 113 4.0 9.0 6.5 0.5 120 chr3R 5931445 intron CG34113 - chr3R 5931505 intron CG34113 - chr3R 5931565 intron CG34113 - chr3R_4_5930001 chr3R_5930001 D20-c5 1085 chr3R 5935338 5935391 chr3R 5935439 5935490 9 100 1.5 0.5 1.0 4.5 152 chr3R 5935338 intron CG34113 - chr3R 5935414 intron CG34113 - chr3R 5935490 intron CG34113 - chr3R_9_5935001 chr3R_5935001 D20-c5 1086 chr3R 5943384 5943417 chr3R 5943486 5943521 6 104 0.0 0.0 0.0 6.0 137 chr3R 5943384 intron CG34113 - chr3R 5943452 intron CG34113 - chr3R 5943521 intron CG34113 - chr3R_6_5940001 chr3R_5940001 D20-c5 1087 chr3R 5991441 5991482 chr3R 5991548 5991571 9 101 1.0 4.5 2.8 2.4 130 chr3R 5991441 intergenic not near genes chr3R 5991506 intergenic not near genes chr3R 5991571 intergenic not near genes chr3R_9_5990001 chr3R_5990001 D20-c5 1088 chr3R 5999467 5999496 chr3R 5999575 5999603 4 108 1.5 4.0 2.8 1.1 136 chr3R 5999467 intergenic not near genes chr3R 5999535 intergenic not near genes chr3R 5999603 intergenic not near genes chr3R_4_5995001 chr3R_5995001 D20-c5 1089 chr3R 6015948 6015992 chr3R 6024452 6024498 Tirant 11 8505 3.0 8.5 5.8 1.6 8550 chr3R 6015948 intergenic not near genes chr3R 6020223 intergenic not near genes chr3R 6024498 intergenic not near genes chr3R_11_6020001 chr3R_6020001 D20-c5 1090 chr3R 6048420 6048474 chr3R 6048528 6048579 8 107 2.5 0.0 1.2 3.6 159 chr3R 6048420 intergenic not near genes chr3R 6048500 intergenic not near genes chr3R 6048579 intergenic not near genes chr3R_8_6045001 chr3R_6045001 D20-c5 1091 chr3R 6121033 6121167 chr3R 6121134 6121410 BS 6 121 0.0 0.0 0.0 6.0 377 chr3R 6121033 intergenic not near genes chr3R 6121222 intergenic not near genes chr3R 6121410 intergenic not near genes chr3R_6_6120001 chr3R_6120001 D20-c5 1092 chr3R 6158490 6158523 chr3R 6167098 6167117 Tirant 7 8606 4.0 2.5 3.2 1.7 8627 chr3R 6158490 intergenic not near genes chr3R 6162804 intergenic not near genes chr3R 6167117 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 D20-c5 1093 chr3R 6175159 6175201 chr3R 6182456 6182498 HMS-Beagle2 5 7296 3.0 1.5 2.2 1.6 7339 chr3R 6175159 intergenic Osi1 + chr3R 6178828 intron CR45194 + chr3R 6182498 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 D20-c5 1094 chr3R 6191148 6191197 chr3R 6191248 6191302 4 104 3.5 1.0 2.2 1.2 154 chr3R 6191148 intron NPFR + chr3R 6191225 intron NPFR + chr3R 6191302 intron NPFR + chr3R_4_6190001 chr3R_6190001 D20-c5 1095 chr3R 6206270 6206315 chr3R 6206512 6206557 BS 6 242 3.0 3.0 3.0 1.5 287 chr3R 6206270 exon Osi24 + chr3R 6206414 intron Osi24 + chr3R 6206557 intron Osi24 + chr3R_6_6205001 chr3R_6205001 D20-c5 1096 chr3R 6302575 6302616 chr3R 6302679 6302719 9 103 2.5 3.5 3.0 2.2 144 chr3R 6302575 intron Osi15 + chr3R 6302647 intron Osi15 + chr3R 6302719 intron Osi15 + chr3R_9_6300001 chr3R_6300001 D20-c5 1097 chr3R 6523298 6523332 chr3R 6523699 6523717 4 396 0.5 1.0 0.8 2.2 419 chr3R 6523298 intergenic not near genes chr3R 6523508 intergenic not near genes chr3R 6523717 intergenic not near genes chr3R_4_6520001 chr3R_6520001 D20-c5 1098 chr3R 6526844 6526854 chr3R 6526972 6526982 4 128 2.0 1.5 1.8 1.4 138 chr3R 6526844 intergenic not near genes chr3R 6526913 intergenic not near genes chr3R 6526982 intergenic not near genes chr3R_4_6525001 chr3R_6525001 D20-c5 1099 chr3R 6737485 6737524 chr3R 6739289 6739333 Doc 7 1809 3.0 1.0 2.0 2.3 1848 chr3R 6737485 intron pb - chr3R 6738409 intron pb - chr3R 6739333 intron pb - chr3R_7_6735001 chr3R_6735001 D20-c5 1100 chr3R 6803737 6803751 chr3R 6803838 6803852 4 101 0.0 1.0 0.5 2.7 115 chr3R 6803737 intergenic not near genes chr3R 6803794 intergenic not near genes chr3R 6803852 intergenic not near genes chr3R_4_6800001 chr3R_6800001 D20-c5 1101 chr3R 6891230 6891260 chr3R 6891331 6891359 5 99 3.5 1.0 2.2 1.6 129 chr3R 6891230 intergenic not near genes chr3R 6891294 intergenic not near genes chr3R 6891359 intergenic not near genes chr3R_5_6890001 chr3R_6890001 D20-c5 1102 chr3R 6918059 6918085 chr3R 6918162 6918188 4 103 0.5 2.0 1.2 1.8 129 chr3R 6918059 intron Antp - chr3R 6918124 intron Antp - chr3R 6918188 intron Antp - chr3R_4_6915001 chr3R_6915001 D20-c5 1103 chr3R 6987396 6987419 chr3R 6987503 6987527 10 107 0.5 2.0 1.2 4.5 131 chr3R 6987396 intron Antp - chr3R 6987462 intron Antp - chr3R 6987527 intron Antp - chr3R_10_6985001 chr3R_6985001 D20-c5 1104 chr3R 7068491 7068503 chr3R 7068641 7068653 4 150 0.5 1.5 1.0 2.0 162 chr3R 7068491 intron CG1965 + chr3R 7068572 intron CG1965 + chr3R 7068653 intron CG1965 + chr3R_4_7065001 chr3R_7065001 D20-c5 1105 chr3R 7103261 7103306 chr3R 7103362 7103381 6 96 2.0 1.0 1.5 2.4 120 chr3R 7103261 intron Alh - chr3R 7103321 intron Alh - chr3R 7103381 intron Alh - chr3R_6_7100001 chr3R_7100001 D20-c5 1106 chr3R 7205968 7206010 chr3R 7206081 7206123 6 113 2.0 1.5 1.8 2.1 155 chr3R 7205968 intergenic not near genes chr3R 7206046 intergenic not near genes chr3R 7206123 intergenic not near genes chr3R_6_7205001 chr3R_7205001 D20-c5 1107 chr3R 7548577 7548630 chr3R 7548681 7548734 5 101 2.0 1.0 1.5 2.0 157 chr3R 7548577 intron alpha-Est1 - chr3R 7548656 intron alpha-Est1 - chr3R 7548734 intron alpha-Est1 - chr3R_5_7545001 chr3R_7545001 D20-c5 1108 chr3R 7617972 7618006 chr3R 7618089 7618123 6 116 1.0 1.5 1.2 2.7 151 chr3R 7617972 intron CG34127 - chr3R 7618048 intron CG34127 - chr3R 7618123 intron CG34127 - chr3R_6_7615001 chr3R_7615001 D20-c5 1109 chr3R 7621530 7621558 chr3R 7621646 7621673 4 115 0.5 4.5 2.5 1.1 143 chr3R 7621530 intron CG34127 - chr3R 7621602 intron CG34127 - chr3R 7621673 intron CG34127 - chr3R_4_7620001 chr3R_7620001 D20-c5 1110 chr3R 7653798 7653830 chr3R 7653909 7653940 8 110 4.5 0.0 2.2 2.5 142 chr3R 7653798 intergenic not near genes chr3R 7653869 intergenic not near genes chr3R 7653940 intergenic not near genes chr3R_8_7650001 chr3R_7650001 D20-c5 1111 chr3R 7677892 7677939 chr3R 7678030 7678059 4 134 1.5 1.5 1.5 1.6 167 chr3R 7677892 intron Nlg1 + chr3R 7677976 intron Nlg1 + chr3R 7678059 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 D20-c5 1112 chr3R 7686793 7686847 chr3R 7686899 7686953 7 106 3.5 0.5 2.0 2.3 160 chr3R 7686793 intron Nlg1 + chr3R 7686873 intron Nlg1 + chr3R 7686953 intron Nlg1 + chr3R_7_7685001 chr3R_7685001 D20-c5 1113 chr3R 7687775 7687831 chr3R 7687884 7687940 8 108 2.5 0.0 1.2 3.6 165 chr3R 7687775 intron Nlg1 + chr3R 7687858 intron Nlg1 + chr3R 7687940 intron Nlg1 + chr3R_8_7685001 chr3R_7685001 D20-c5 1114 chr3R 7690030 7690060 chr3R 7690146 7690176 5 116 2.5 0.5 1.5 2.0 146 chr3R 7690030 intron Nlg1 + chr3R 7690103 intron Nlg1 + chr3R 7690176 intron Nlg1 + chr3R_5_7690001 chr3R_7690001 D20-c5 1115 chr3R 7849616 7849665 chr3R 7850808 7850857 1360 5 1192 1.0 1.0 1.0 2.5 1241 chr3R 7849616 intron CG34384 + chr3R 7850236 intron CG34384 + chr3R 7850857 intron CG34384 + chr3R_5_7850001 chr3R_7850001 D20-c5 1116 chr3R 7955913 7955958 chr3R 7956015 7956060 7 102 2.0 2.5 2.2 2.2 147 chr3R 7955913 intron dsx - chr3R 7955986 intron dsx - chr3R 7956060 intron dsx - chr3R_7_7955001 chr3R_7955001 D20-c5 1117 chr3R 7973318 7973336 chr3R 7974407 7974422 1360 6 1088 2.5 2.5 2.5 1.7 1104 chr3R 7973318 intergenic not near genes chr3R 7973870 intergenic not near genes chr3R 7974422 3` UTR CD98hc - chr3R_6_7970001 chr3R_7970001 D20-c5 1118 chr3R 8049034 8049064 chr3R 8049623 8049663 4 596 1.0 3.0 2.0 1.3 629 chr3R 8049034 intron CG43060 + chr3R 8049348 intron,exon CG43060 +,CG43618 + chr3R 8049663 intron CG43060 + chr3R_4_8045001 chr3R_8045001 D20-c5 1119 chr3R 8070888 8070926 chr3R 8070994 8071032 10 105 1.0 3.0 2.0 3.3 144 chr3R 8070888 intron mAChR-B + chr3R 8070960 intron mAChR-B + chr3R 8071032 intron mAChR-B + chr3R_10_8070001 chr3R_8070001 D20-c5 1120 chr3R 8090252 8090300 chr3R 8090454 8090502 6 202 0.0 0.5 0.2 5.0 250 chr3R 8090252 5` UTR CR44330 + chr3R 8090377 intergenic CR44330 + chr3R 8090502 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 D20-c5 1121 chr3R 8090540 8090567 chr3R 8094042 8094069 297 4 3502 1.5 6.0 3.8 0.8 3529 chr3R 8090540 intergenic CR44330 + chr3R 8092304 intergenic not near genes chr3R 8094069 intergenic CG7900 + chr3R_4_8090001 chr3R_8090001 D20-c5 1122 chr3R 8101756 8101784 chr3R 8104865 8104890 G2 5 3108 1.5 3.0 2.2 1.6 3134 chr3R 8101756 exon CG7900 + chr3R 8103323 intron CG7900 + chr3R 8104890 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 D20-c5 1123 chr3R 8107371 8107392 chr3R 8107529 8107551 4 159 5.0 0.5 2.8 1.1 180 chr3R 8107371 intron puc + chr3R 8107461 intron puc + chr3R 8107551 intron puc + chr3R_4_8105001 chr3R_8105001 D20-c5 1124 chr3R 8207559 8207586 chr3R 8208418 8208456 F-element 5 868 1.0 4.0 2.5 1.4 897 chr3R 8207559 intergenic not near genes chr3R 8208008 intergenic not near genes chr3R 8208456 intergenic not near genes chr3R_5_8205001 chr3R_8205001 D20-c5 1125 chr3R 8293977 8294019 chr3R 8294180 8294214 7 201 0.5 2.0 1.2 3.2 237 chr3R 8293977 3` UTR CG9626 - chr3R 8294096 3` UTR CG9626 - chr3R 8294214 exon CG9626 - chr3R_7_8290001 chr3R_8290001 D20-c5 1126 chr3R 8339242 8339247 chr3R 21907534 21907536 39 13568288 11.5 13.5 12.5 2.9 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_39_15120001 chr3R_15120001 D20-c5 1127 chr3R 8402985 8403037 chr3R 8412176 8412212 roo 15 9189 3.5 4.5 4.0 3.0 9227 chr3R 8402985 intron CG45263 - chr3R 8407598 intron CG45263 - chr3R 8412212 intron CG45263 - chr3R_15_8405001 chr3R_8405001 D20-c5 1128 chr3R 8426193 8426211 chr3R 8426303 8426320 6 109 6.0 7.5 6.8 0.8 127 chr3R 8426193 intron CG45263 - chr3R 8426256 intron CG45263 - chr3R 8426320 intron CG45263 - chr3R_6_8425001 chr3R_8425001 D20-c5 1129 chr3R 8478055 8478098 chr3R 8478160 8478203 5 105 0.0 1.5 0.8 2.8 148 chr3R 8478055 intergenic CG45263 - chr3R 8478129 intergenic not near genes chr3R 8478203 intergenic not near genes chr3R_5_8475001 chr3R_8475001 D20-c5 1130 chr3R 8570468 8570506 chr3R 8575113 8575166 HMS-Beagle 5 4653 2.5 1.5 2.0 1.7 4698 chr3R 8570468 intergenic not near genes chr3R 8572817 intergenic not near genes chr3R 8575166 intergenic not near genes chr3R_5_8570001 chr3R_8570001 D20-c5 1131 chr3R 8576169 8576185 chr3R 8576335 8576381 4 187 0.5 0.5 0.5 2.7 212 chr3R 8576169 intergenic not near genes chr3R 8576275 intergenic not near genes chr3R 8576381 intergenic not near genes chr3R_4_8575001 chr3R_8575001 D20-c5 1132 chr3R 8601763 8601792 chr3R 8610929 8610970 roo 6 9176 3.0 1.5 2.2 1.9 9207 chr3R 8601763 intron 5-HT2B + chr3R 8606366 intron 5-HT2B + chr3R 8610970 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 D20-c5 1133 chr3R 8631484 8631523 chr3R 8631613 8631652 4 129 5.5 0.5 3.0 1.0 168 chr3R 8631484 intergenic not near genes chr3R 8631568 intergenic not near genes chr3R 8631652 intergenic not near genes chr3R_4_8630001 chr3R_8630001 D20-c5 1134 chr3R 8707347 8707381 chr3R 8709797 8709847 jockey 11 2463 1.0 3.5 2.2 3.4 2500 chr3R 8707347 intergenic not near genes chr3R 8708597 intergenic not near genes chr3R 8709847 intergenic not near genes chr3R_11_8705001 chr3R_8705001 D20-c5 1135 chr3R 8917873 8917901 chr3R 8917978 8918006 6 105 1.5 3.5 2.5 1.7 133 chr3R 8917873 intron pyd - chr3R 8917940 intron pyd - chr3R 8918006 intron pyd - chr3R_6_8915001 chr3R_8915001 D20-c5 1136 chr3R 9108843 9108879 chr3R 9108944 9108979 5 99 0.5 0.0 0.2 4.2 136 chr3R 9108843 intron pum - chr3R 9108911 intron pum - chr3R 9108979 intron pum - chr3R_5_9105001 chr3R_9105001 D20-c5 1137 chr3R 9141126 9141170 chr3R 9141234 9141279 5 108 2.5 2.0 2.2 1.6 153 chr3R 9141126 intron pum - chr3R 9141202 intron pum - chr3R 9141279 intron pum - chr3R_5_9140001 chr3R_9140001 D20-c5 1138 chr3R 9211179 9211216 chr3R 9211423 9211460 5 244 0.5 0.5 0.5 3.3 281 chr3R 9211179 intron pum - chr3R 9211320 intron pum - chr3R 9211460 intron pum - chr3R_5_9210001 chr3R_9210001 D20-c5 1139 chr3R 9214777 9214819 chr3R 9214917 9214957 12 139 2.5 3.5 3.0 3.0 180 chr3R 9214777 intron pum - chr3R 9214867 intron pum - chr3R 9214957 intron pum - chr3R_12_9210001 chr3R_9210001 D20-c5 1140 chr3R 9278779 9278806 chr3R 9284057 9284089 Rt1a 7 5283 3.0 5.0 4.0 1.4 5310 chr3R 9278779 intergenic not near genes chr3R 9281434 intergenic not near genes chr3R 9284089 intergenic not near genes chr3R_7_9280001 chr3R_9280001 D20-c5 1141 chr3R 9319559 9319599 chr3R 9320019 9320059 jockey 5 460 1.5 2.5 2.0 1.7 500 chr3R 9319559 intron CG8861 - chr3R 9319809 intron CG8861 - chr3R 9320059 intron CG8861 - chr3R_5_9315001 chr3R_9315001 D20-c5 1142 chr3R 9379165 9379176 chr3R 9379272 9379283 4 106 0.0 3.0 1.5 1.6 118 chr3R 9379165 intron FER - chr3R 9379224 intron FER - chr3R 9379283 intron FER - chr3R_4_9375001 chr3R_9375001 D20-c5 1143 chr3R 9382796 9382836 chr3R 9382945 9382986 5 149 2.5 1.0 1.8 1.8 190 chr3R 9382796 intron FER - chr3R 9382891 intron FER - chr3R 9382986 intron FER - chr3R_5_9380001 chr3R_9380001 D20-c5 1144 chr3R 9620956 9620956 chr3R 21907534 21907536 12 12286579 4.5 13.5 9.0 1.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_12_15760001 chr3R_15760001 D20-c5 1145 chr3R 9699968 9699991 chr3R 9700082 9700104 1360 6 112 1.5 4.5 3.0 1.5 136 chr3R 9699968 intron Unc-115a - chr3R 9700036 intron Unc-115a - chr3R 9700104 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 D20-c5 1146 chr3R 9997396 9997442 chr3R 9997507 9997525 11 101 2.5 2.5 2.5 3.1 129 chr3R 9997396 5` UTR Spn85F + chr3R 9997460 5` UTR Spn85F + chr3R 9997525 5` UTR Spn85F + chr3R_11_9995001 chr3R_9995001 D20-c5 1147 chr3R 10073754 10073795 chr3R 10073888 10073928 6 134 1.5 4.0 2.8 1.6 174 chr3R 10073754 3` UTR nerfin-2 + chr3R 10073841 3` UTR CG5361 - chr3R 10073928 exon CG5361 - chr3R_6_10070001 chr3R_10070001 D20-c5 1148 chr3R 10231758 10231809 chr3R 10237360 10237411 mdg3 8 5602 1.0 2.0 1.5 3.2 5653 chr3R 10231758 intron CG42795 + chr3R 10234584 intron CG42795 + chr3R 10237411 intron CG42795 + chr3R_8_10230001 chr3R_10230001 D20-c5 1149 chr3R 10306956 10307004 chr3R 10312190 10312240 9 5235 27.0 9.0 18.0 0.5 5284 chr3R 10306956 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312240 3` UTR Bruce - chr3R_9_10305001 chr3R_10305001 D20-c5 1150 chr3R 10403022 10403064 chr3R 10403112 10403169 7 102 0.0 0.0 0.0 7.0 147 chr3R 10403022 3` UTR CG6325 - chr3R 10403096 3` UTR CG6325 - chr3R 10403169 3` UTR CG6325 - chr3R_7_10400001 chr3R_10400001 D20-c5 1151 chr3R 6090420 6090420 chr3R 10451877 10451877 5 4361457 4.0 8.0 6.0 0.7 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_5_8270001 chr3R_8270001 D20-c5 1152 chr3R 10724938 10724977 chr3R 10725041 10725079 5 102 2.0 3.0 2.5 1.4 141 chr3R 10724938 intergenic not near genes chr3R 10725008 intergenic not near genes chr3R 10725079 intergenic not near genes chr3R_5_10725001 chr3R_10725001 D20-c5 1153 chr3R 10727626 10727679 chr3R 10727723 10727781 13 104 2.5 1.5 2.0 4.3 155 chr3R 10727626 intergenic not near genes chr3R 10727704 intergenic not near genes chr3R 10727781 intergenic not near genes chr3R_13_10725001 chr3R_10725001 D20-c5 1154 chr3R 10730966 10731025 chr3R 10731157 10731216 8 191 0.5 0.0 0.2 6.7 250 chr3R 10730966 intergenic not near genes chr3R 10731091 intergenic not near genes chr3R 10731216 intergenic not near genes chr3R_8_10730001 chr3R_10730001 D20-c5 1155 chr3R 10804158 10804200 chr3R 10811715 10811757 17.6 8 7557 2.5 2.0 2.2 2.5 7599 chr3R 10804158 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811757 3` UTR CG14693 - chr3R_8_10805001 chr3R_10805001 D20-c5 1156 chr3R 10926496 10926521 chr3R 10926619 10926643 4 121 14.5 16.0 15.2 0.2 147 chr3R 10926496 intergenic not near genes chr3R 10926570 intergenic not near genes chr3R 10926643 intergenic not near genes chr3R_4_10925001 chr3R_10925001 D20-c5 1157 chr3R 10954106 10954165 chr3R 10954221 10954274 13 114 3.5 2.0 2.8 3.4 168 chr3R 10954106 intergenic not near genes chr3R 10954190 intergenic not near genes chr3R 10954274 intergenic not near genes chr3R_13_10950001 chr3R_10950001 D20-c5 1158 chr3R 10963536 10963589 chr3R 10963654 10963708 7 119 1.5 2.5 2.0 2.3 172 chr3R 10963536 intergenic not near genes chr3R 10963622 intergenic not near genes chr3R 10963708 intergenic not near genes chr3R_7_10960001 chr3R_10960001 D20-c5 1159 chr3R 11065580 11065618 chr3R 11071257 11071284 297 5 5671 1.0 4.0 2.5 1.4 5704 chr3R 11065580 intergenic not near genes chr3R 11068432 intergenic not near genes chr3R 11071284 intergenic not near genes chr3R_5_11065001 chr3R_11065001 D20-c5 1160 chr3R 11099634 11099684 chr3R 11099791 11099841 4 157 1.5 2.0 1.8 1.4 207 chr3R 11099634 intergenic not near genes chr3R 11099738 intergenic not near genes chr3R 11099841 intergenic not near genes chr3R_4_11095001 chr3R_11095001 D20-c5 1161 chr3R 11102300 11102334 chr3R 11102406 11102440 5 105 2.0 3.5 2.8 1.3 140 chr3R 11102300 intergenic not near genes chr3R 11102370 intergenic not near genes chr3R 11102440 intergenic not near genes chr3R_5_11100001 chr3R_11100001 D20-c5 1162 chr3R 11151674 11151704 chr3R 11156542 11156572 6 4868 7.5 5.0 6.2 0.8 4898 chr3R 11151674 3` UTR Ugt86Di - chr3R 11154123 intergenic Ugt86Di - chr3R 11156572 intergenic Ugt86Dc + chr3R_6_11150001 chr3R_11150001 D20-c5 1163 chr3R 11174570 11174605 chr3R 11175309 11175344 4 739 16.0 19.5 17.8 0.2 774 chr3R 11174570 exon Ugt86Dj - chr3R 11174957 intron Ugt86Dj - chr3R 11175344 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 D20-c5 1164 chr3R 11263481 11263525 chr3R 11263588 11263633 12 108 2.0 2.0 2.0 4.0 152 chr3R 11263481 intergenic not near genes chr3R 11263557 intergenic not near genes chr3R 11263633 intergenic not near genes chr3R_12_11260001 chr3R_11260001 D20-c5 1165 chr3R 11265906 11265923 chr3R 11266015 11266032 8 109 5.5 4.5 5.0 1.3 126 chr3R 11265906 intergenic not near genes chr3R 11265969 intergenic not near genes chr3R 11266032 intergenic not near genes chr3R_8_11265001 chr3R_11265001 D20-c5 1166 chr3R 11476356 11476395 chr3R 11476469 11476507 15 111 3.5 5.0 4.2 2.9 151 chr3R 11476356 intergenic not near genes chr3R 11476432 intergenic not near genes chr3R 11476507 intergenic not near genes chr3R_15_11475001 chr3R_11475001 D20-c5 1167 chr3R 11841046 11841072 chr3R 11846262 11846288 BS 6 5215 7.0 1.5 4.2 1.2 5242 chr3R 11841046 intron CG6959 - chr3R 11843667 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_6_11840001 chr3R_11840001 D20-c5 1168 chr3R 11879346 11879400 chr3R 11885193 11885248 11 5848 30.5 17.0 23.8 0.4 5902 chr3R 11879346 exon sad + chr3R 11882297 exon CG6962 - chr3R 11885248 intron,exon CG31368 +,mthl5 - chr3R_11_11880001 chr3R_11880001 D20-c5 1169 chr3R 11920954 11921001 chr3R 11921076 11921116 7 120 1.5 1.5 1.5 2.8 162 chr3R 11920954 intron Cad87A - chr3R 11921035 intron Cad87A - chr3R 11921116 intron Cad87A - chr3R_7_11920001 chr3R_11920001 D20-c5 1170 chr3R 12022875 12022915 chr3R 12025072 12025117 pogo 5 2201 0.5 2.5 1.5 2.0 2242 chr3R 12022875 intergenic not near genes chr3R 12023996 intergenic not near genes chr3R 12025117 intergenic not near genes chr3R_5_12020001 chr3R_12020001 D20-c5 1171 chr3R 12102847 12102881 chr3R 12102973 12103004 8 125 7.0 3.5 5.2 1.3 157 chr3R 12102847 intron dpr17 + chr3R 12102926 intron dpr17 + chr3R 12103004 intron dpr17 + chr3R_8_12100001 chr3R_12100001 D20-c5 1172 chr3R 12149394 12149435 chr3R 12149504 12149545 5 110 3.0 3.0 3.0 1.2 151 chr3R 12149394 intron dpr15 - chr3R 12149470 intron dpr15 - chr3R 12149545 intron dpr15 - chr3R_5_12145001 chr3R_12145001 D20-c5 1173 chr3R 12170721 12170760 chr3R 12170853 12170892 10 132 2.5 3.0 2.8 2.6 171 chr3R 12170721 intergenic not near genes chr3R 12170806 intergenic not near genes chr3R 12170892 intergenic not near genes chr3R_10_12170001 chr3R_12170001 D20-c5 1174 chr3R 12175016 12175067 chr3R 12175244 12175263 7 223 2.5 1.5 2.0 2.3 247 chr3R 12175016 intergenic not near genes chr3R 12175140 intergenic not near genes chr3R 12175263 intergenic not near genes chr3R_7_12175001 chr3R_12175001 D20-c5 1175 chr3R 12202275 12202318 chr3R 12202405 12202451 6 129 2.5 6.5 4.5 1.1 176 chr3R 12202275 intergenic not near genes chr3R 12202363 intergenic not near genes chr3R 12202451 intergenic not near genes chr3R_6_12200001 chr3R_12200001 D20-c5 1176 chr3R 12214352 12214370 chr3R 12214458 12214484 7 114 3.5 5.0 4.2 1.3 132 chr3R 12214352 3` UTR CG4848 - chr3R 12214418 3` UTR CG4848 - chr3R 12214484 3` UTR CG4848 - chr3R_7_12210001 chr3R_12210001 D20-c5 1177 chr3R 12247116 12247172 chr3R 12247226 12247282 5 110 2.0 0.0 1.0 2.5 166 chr3R 12247116 intergenic not near genes chr3R 12247199 intergenic not near genes chr3R 12247282 intergenic not near genes chr3R_5_12245001 chr3R_12245001 D20-c5 1178 chr3R 12267851 12267887 chr3R 12267956 12267992 4 105 0.0 1.0 0.5 2.7 141 chr3R 12267851 intron svp + chr3R 12267922 intron svp + chr3R 12267992 intron svp + chr3R_4_12265001 chr3R_12265001 D20-c5 1179 chr3R 12290832 12290882 chr3R 12290948 12290960 14 112 4.5 3.5 4.0 2.8 128 chr3R 12290832 intron svp + chr3R 12290896 intron svp + chr3R 12290960 intron svp + chr3R_14_12290001 chr3R_12290001 D20-c5 1180 chr3R 12297626 12297642 chr3R 12297728 12297743 4 102 8.0 14.5 11.2 0.3 117 chr3R 12297626 intron svp + chr3R 12297684 intron svp + chr3R 12297743 intron svp + chr3R_4_12295001 chr3R_12295001 D20-c5 1181 chr3R 12314199 12314256 chr3R 12314338 12314395 11 139 1.0 2.5 1.8 3.9 196 chr3R 12314199 intergenic not near genes chr3R 12314297 intergenic not near genes chr3R 12314395 intergenic not near genes chr3R_11_12310001 chr3R_12310001 D20-c5 1182 chr3R 12392871 12392900 chr3R 12392990 12393025 9 123 1.0 3.0 2.0 3.0 154 chr3R 12392871 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392948 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393025 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_9_12390001 chr3R_12390001 D20-c5 1183 chr3R 12436433 12436463 chr3R 12436545 12436571 6 111 5.0 4.5 4.8 1.0 138 chr3R 12436433 exon Desat2 + chr3R 12436502 exon Desat2 + chr3R 12436571 exon Desat2 + chr3R_6_12435001 chr3R_12435001 D20-c5 1184 chr3R 12542387 12542428 chr3R 12542495 12542535 7 104 1.0 2.5 1.8 2.5 148 chr3R 12542387 intron Octbeta3R - chr3R 12542461 intron Octbeta3R - chr3R 12542535 intron Octbeta3R - chr3R_7_12540001 chr3R_12540001 D20-c5 1185 chr3R 12599354 12599403 chr3R 12599462 12599510 7 108 1.5 3.0 2.2 2.2 156 chr3R 12599354 intergenic not near genes chr3R 12599432 intergenic not near genes chr3R 12599510 intergenic not near genes chr3R_7_12595001 chr3R_12595001 D20-c5 1186 chr3R 12602373 12602413 chr3R 12602476 12602514 9 102 2.5 2.0 2.2 2.8 141 chr3R 12602373 intergenic not near genes chr3R 12602444 intergenic not near genes chr3R 12602514 intergenic not near genes chr3R_9_12600001 chr3R_12600001 D20-c5 1187 chr3R 12666754 12666789 chr3R 12666906 12666941 4 152 2.5 4.0 3.2 1.0 187 chr3R 12666754 intron CG14395 + chr3R 12666848 intron CG14395 + chr3R 12666941 intron CG14395 + chr3R_4_12665001 chr3R_12665001 D20-c5 1188 chr3R 12733455 12733489 chr3R 12733557 12733589 7 101 4.5 4.0 4.2 1.3 134 chr3R 12733455 intergenic not near genes chr3R 12733522 intergenic not near genes chr3R 12733589 intergenic not near genes chr3R_7_12730001 chr3R_12730001 D20-c5 1189 chr3R 12810034 12810075 chr3R 12810133 12810177 14 95 2.5 3.0 2.8 3.7 143 chr3R 12810034 intergenic not near genes chr3R 12810106 intergenic not near genes chr3R 12810177 intergenic not near genes chr3R_14_12810001 chr3R_12810001 D20-c5 1190 chr3R 12864549 12864571 chr3R 12865058 12865081 roo 4 510 1.5 2.0 1.8 1.4 532 chr3R 12864549 intergenic not near genes chr3R 12864815 intergenic not near genes chr3R 12865081 intergenic not near genes chr3R_4_12860001 chr3R_12860001 D20-c5 1191 chr3R 12866472 12866520 chr3R 12866640 12866696 8 174 1.0 0.5 0.8 4.4 224 chr3R 12866472 intergenic not near genes chr3R 12866584 intergenic not near genes chr3R 12866696 intergenic not near genes chr3R_8_12865001 chr3R_12865001 D20-c5 1192 chr3R 12886910 12886945 chr3R 12887019 12887040 5 107 3.0 3.0 3.0 1.2 130 chr3R 12886910 intergenic not near genes chr3R 12886975 intergenic not near genes chr3R 12887040 intergenic not near genes chr3R_5_12885001 chr3R_12885001 D20-c5 1193 chr3R 12920136 12920173 chr3R 12925364 12925401 copia 9 5228 3.5 3.0 3.2 2.1 5265 chr3R 12920136 intron beat-Vb + chr3R 12922768 intron beat-Vb + chr3R 12925401 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 D20-c5 1194 chr3R 13059941 13059969 chr3R 13060161 13060189 5 219 1.0 0.5 0.8 2.8 248 chr3R 13059941 intron sim + chr3R 13060065 intron sim + chr3R 13060189 intron sim + chr3R_5_13060001 chr3R_13060001 D20-c5 1195 chr3R 13075346 13075361 chr3R 13075452 13075467 4 106 3.0 0.5 1.8 1.4 121 chr3R 13075346 intron sim + chr3R 13075406 intron sim + chr3R 13075467 intron sim + chr3R_4_13075001 chr3R_13075001 D20-c5 1196 chr3R 13120746 13120792 chr3R 13120848 13120894 12 102 3.5 3.0 3.2 2.9 148 chr3R 13120746 intron timeout + chr3R 13120820 intron timeout + chr3R 13120894 intron timeout + chr3R_12_13120001 chr3R_13120001 D20-c5 1197 chr3R 13135811 13135857 chr3R 13138011 13138057 pogo 5 2200 4.5 1.0 2.8 1.3 2246 chr3R 13135811 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136934 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138057 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 D20-c5 1198 chr3R 13143016 13143066 chr3R 13148617 13148667 mdg3 13 5600 2.0 3.0 2.5 3.7 5651 chr3R 13143016 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148667 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_13_13145001 chr3R_13145001 D20-c5 1199 chr3R 13195925 13195982 chr3R 13196045 13196100 14 114 5.5 2.5 4.0 2.8 175 chr3R 13195925 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196100 intergenic not near genes chr3R_14_13195001 chr3R_13195001 D20-c5 1200 chr3R 13205399 13205429 chr3R 13205505 13205535 5 105 2.0 1.0 1.5 2.0 136 chr3R 13205399 intergenic not near genes chr3R 13205467 intergenic not near genes chr3R 13205535 intergenic not near genes chr3R_5_13205001 chr3R_13205001 D20-c5 1201 chr3R 13294959 13294969 chr3R 13295073 13295083 5 114 6.0 8.5 7.2 0.6 124 chr3R 13294959 exon CG8773 + chr3R 13295021 exon CG8773 + chr3R 13295083 exon CG8773 + chr3R_5_13295001 chr3R_13295001 D20-c5 1202 chr3R 13302897 13302932 chr3R 13303053 13303088 7 151 3.5 5.0 4.2 1.3 191 chr3R 13302897 exon CG32473 + chr3R 13302992 exon CG32473 + chr3R 13303088 exon CG32473 + chr3R_7_13300001 chr3R_13300001 D20-c5 1203 chr3R 13323636 13323693 chr3R 13323863 13323919 8 227 1.5 1.5 1.5 3.2 283 chr3R 13323636 intergenic not near genes chr3R 13323778 intergenic not near genes chr3R 13323919 intergenic not near genes chr3R_8_13320001 chr3R_13320001 D20-c5 1204 chr3R 13336522 13336571 chr3R 13337726 13337776 11 1204 20.5 17.0 18.8 0.6 1254 chr3R 13336522 intergenic not near genes chr3R 13337149 intergenic not near genes chr3R 13337776 intergenic not near genes chr3R_11_13335001 chr3R_13335001 D20-c5 1205 chr3R 13363458 13363484 chr3R 13363577 13363604 4 120 0.0 1.0 0.5 2.7 146 chr3R 13363458 intron poly - chr3R 13363531 intron poly - chr3R 13363604 intron poly - chr3R_4_13360001 chr3R_13360001 D20-c5 1206 chr3R 13435366 13435402 chr3R 13435566 13435602 4 199 0.5 1.0 0.8 2.2 236 chr3R 13435366 intergenic yrt - chr3R 13435484 intergenic yrt - chr3R 13435602 intergenic not near genes chr3R_4_13435001 chr3R_13435001 D20-c5 1207 chr3R 13439566 13439595 chr3R 13439671 13439702 4 106 2.5 2.5 2.5 1.1 136 chr3R 13439566 intergenic CR42756 - chr3R 13439634 intergenic CR42756 - chr3R 13439702 intergenic CR42756 - chr3R_4_13435001 chr3R_13435001 D20-c5 1208 chr3R 13574589 13574598 chr3R 13574675 13574700 6 99 4.5 8.0 6.2 0.8 111 chr3R 13574589 intergenic CR43848 + chr3R 13574644 intergenic CR43848 + chr3R 13574700 intergenic CR43848 + chr3R_6_13570001 chr3R_13570001 D20-c5 1209 chr3R 13603048 13603077 chr3R 13603156 13603193 5 113 1.5 1.0 1.2 2.3 145 chr3R 13603048 intergenic not near genes chr3R 13603120 intergenic not near genes chr3R 13603193 intergenic not near genes chr3R_5_13600001 chr3R_13600001 D20-c5 1210 chr3R 13693028 13693028 chr3R 21907534 21907535 12 8214507 7.5 13.5 10.5 1.0 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 D20-c5 1211 chr3R 13828828 13828861 chr3R 13828939 13828972 5 111 2.5 0.0 1.2 2.3 144 chr3R 13828828 intergenic CR43300 + chr3R 13828900 intergenic CR43300 + chr3R 13828972 intergenic not near genes chr3R_5_13825001 chr3R_13825001 D20-c5 1212 chr3R 13863674 13863698 chr3R 13863786 13863810 4 112 1.0 1.0 1.0 2.0 136 chr3R 13863674 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863810 intergenic not near genes chr3R_4_13860001 chr3R_13860001 D20-c5 1213 chr3R 14021625 14021678 chr3R 14023467 14023519 S-element 8 1836 1.5 2.0 1.8 2.9 1894 chr3R 14021625 intron rdx - chr3R 14022572 intron rdx - chr3R 14023519 intron rdx - chr3R_8_14020001 chr3R_14020001 D20-c5 1214 chr3R 14067124 14067155 chr3R 14067228 14067259 4 104 0.5 0.5 0.5 2.7 135 chr3R 14067124 exon foxo + chr3R 14067192 intron foxo + chr3R 14067259 intron foxo + chr3R_4_14065001 chr3R_14065001 D20-c5 1215 chr3R 14174936 14174986 chr3R 14175048 14175098 10 112 0.0 1.0 0.5 6.7 162 chr3R 14174936 3` UTR Dop1R1 - chr3R 14175017 3` UTR Dop1R1 - chr3R 14175098 3` UTR Dop1R1 - chr3R_10_14175001 chr3R_14175001 D20-c5 1216 chr3R 14246388 14246418 chr3R 14247908 14247939 jockey 8 1521 4.0 1.0 2.5 2.3 1551 chr3R 14246388 intergenic not near genes chr3R 14247164 intergenic not near genes chr3R 14247939 intergenic not near genes chr3R_8_14245001 chr3R_14245001 D20-c5 1217 chr3R 14319039 14319082 chr3R 14319146 14319189 6 107 1.0 1.0 1.0 3.0 150 chr3R 14319039 3` UTR pr-set7 + chr3R 14319114 3` UTR pr-set7 + chr3R 14319189 3` UTR pr-set7 + chr3R_6_14315001 chr3R_14315001 D20-c5 1218 chr3R 14372616 14372660 chr3R 14372731 14372754 6 111 1.0 2.5 1.8 2.1 138 chr3R 14372616 5` UTR NK7.1 - chr3R 14372685 5` UTR NK7.1 - chr3R 14372754 5` UTR NK7.1 - chr3R_6_14370001 chr3R_14370001 D20-c5 1219 chr3R 14374551 14374570 chr3R 14374687 14374706 5 136 5.0 1.0 3.0 1.2 155 chr3R 14374551 intergenic not near genes chr3R 14374628 intergenic not near genes chr3R 14374706 intergenic not near genes chr3R_5_14370001 chr3R_14370001 D20-c5 1220 chr3R 14469785 14469826 chr3R 14469886 14469927 7 101 2.5 4.0 3.2 1.7 142 chr3R 14469785 intron cv-c - chr3R 14469856 intron cv-c - chr3R 14469927 intron cv-c - chr3R_7_14465001 chr3R_14465001 D20-c5 1221 chr3R 14527391 14527415 chr3R 14527492 14527517 6 100 4.5 5.0 4.8 1.0 126 chr3R 14527391 intron Pde6 - chr3R 14527454 intron Pde6 - chr3R 14527517 intron Pde6 - chr3R_6_14525001 chr3R_14525001 D20-c5 1222 chr3R 14553168 14553197 chr3R 14553314 14553352 4 152 3.5 4.0 3.8 0.8 184 chr3R 14553168 intron Pde6 - chr3R 14553260 intron Pde6 - chr3R 14553352 intron Pde6 - chr3R_4_14550001 chr3R_14550001 D20-c5 1223 chr3R 14597601 14597645 chr3R 14597781 14597825 12 174 2.5 1.0 1.8 4.3 224 chr3R 14597601 intron stumps + chr3R 14597713 intron stumps + chr3R 14597825 intron stumps + chr3R_12_14595001 chr3R_14595001 D20-c5 1224 chr3R 14704366 14704399 chr3R 14704465 14704500 5 99 2.0 1.5 1.8 1.8 134 chr3R 14704366 intron kibra - chr3R 14704433 intron kibra - chr3R 14704500 intron kibra - chr3R_5_14700001 chr3R_14700001 D20-c5 1225 chr3R 14766176 14766218 chr3R 14766355 14766399 6 180 2.0 1.5 1.8 2.1 223 chr3R 14766176 intron jvl + chr3R 14766288 intron jvl + chr3R 14766399 intron jvl + chr3R_6_14765001 chr3R_14765001 D20-c5 1226 chr3R 14821596 14821641 chr3R 14821770 14821815 5 174 0.5 1.0 0.8 2.8 219 chr3R 14821596 intron btsz - chr3R 14821706 intron btsz - chr3R 14821815 intron btsz - chr3R_5_14820001 chr3R_14820001 D20-c5 1227 chr3R 14833465 14833509 chr3R 14834294 14834340 16 830 1.5 5.0 3.2 3.8 875 chr3R 14833465 intron btsz - chr3R 14833902 intron btsz - chr3R 14834340 intron btsz - chr3R_16_14830001 chr3R_14830001 D20-c5 1228 chr3R 14847943 14847959 chr3R 14848045 14848063 5 104 1.0 2.0 1.5 2.0 120 chr3R 14847943 intron btsz - chr3R 14848003 intron btsz - chr3R 14848063 intron btsz - chr3R_5_14845001 chr3R_14845001 D20-c5 1229 chr3R 14880721 14880759 chr3R 14880962 14880998 6 240 21.0 17.0 19.0 0.3 277 chr3R 14880721 exon CG3631 + chr3R 14880860 intron CG3631 + chr3R 14880998 exon CG3631 + chr3R_6_14880001 chr3R_14880001 D20-c5 1230 chr3R 14881469 14881767 chr3R 14881607 14881901 11 133 11.0 15.0 13.0 0.8 432 chr3R 14881469 exon CG3631 + chr3R 14881685 exon CG3631 + chr3R 14881901 exon CG3631 + chr3R_11_14880001 chr3R_14880001 D20-c5 1231 chr3R 14898456 14898497 chr3R 14898601 14898632 6 143 1.5 1.5 1.5 2.4 176 chr3R 14898456 intergenic Nup93-2 -,CG3817 + chr3R 14898544 intergenic Nup93-2 -,CG3817 + chr3R 14898632 intergenic CG3817 +,Nup93-2 - chr3R_6_14895001 chr3R_14895001 D20-c5 1232 chr3R 14923689 14923743 chr3R 14923790 14923845 6 101 2.5 2.5 2.5 1.7 156 chr3R 14923689 3` UTR CR45598 - chr3R 14923767 intergenic CR45598 - chr3R 14923845 intergenic CR45598 - chr3R_6_14920001 chr3R_14920001 D20-c5 1233 chr3R 14968355 14968376 chr3R 14968462 14968481 5 105 3.0 0.0 1.5 2.0 126 chr3R 14968355 intergenic not near genes chr3R 14968418 intergenic not near genes chr3R 14968481 intergenic not near genes chr3R_5_14965001 chr3R_14965001 D20-c5 1234 chr3R 15059258 15059481 chr3R 15059477 15059585 BS 10 174 0.0 0.0 0.0 10.0 327 chr3R 15059258 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059585 intron dpr9 - chr3R_10_15055001 chr3R_15055001 D20-c5 1235 chr3R 15078336 15078373 chr3R 15078441 15078478 6 104 1.0 3.5 2.2 1.9 142 chr3R 15078336 intergenic CG6974 - chr3R 15078407 intergenic CG6974 - chr3R 15078478 intergenic CG6974 - chr3R_6_15075001 chr3R_15075001 D20-c5 1236 chr3R 15079791 15079827 chr3R 15080047 15080092 pogo 5 262 3.5 2.0 2.8 1.3 301 chr3R 15079791 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080092 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 D20-c5 1237 chr3R 15084132 15084175 chr3R 15084289 15084332 5 157 0.0 2.0 1.0 2.5 200 chr3R 15084132 intron CG6966 - chr3R 15084232 intron CG6966 - chr3R 15084332 intron CG6966 - chr3R_5_15080001 chr3R_15080001 D20-c5 1238 chr3R 15087141 15087166 chr3R 15087243 15087270 4 103 3.5 0.0 1.8 1.4 129 chr3R 15087141 intron CG6966 - chr3R 15087206 intron CG6966 - chr3R 15087270 intron CG6966 - chr3R_4_15085001 chr3R_15085001 D20-c5 1239 chr3R 15102473 15102527 chr3R 15109755 15109807 412 4 7279 0.0 1.0 0.5 2.7 7334 chr3R 15102473 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109807 intron CG42788 - chr3R_4_15105001 chr3R_15105001 D20-c5 1240 chr3R 15132041 15132074 chr3R 15135125 15135159 Juan 12 3084 4.5 5.0 4.8 2.1 3118 chr3R 15132041 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135159 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 D20-c5 1241 chr3R 15130875 15130895 chr3R 15141216 15141231 6 10340 16.5 26.5 21.5 0.3 10356 chr3R 15130875 intron CG42788 - chr3R 15136053 exon CG6912 - chr3R 15141231 exon CG3987 + chr3R_6_15135001 chr3R_15135001 D20-c5 1242 chr3R 15462918 15462942 chr3R 15463009 15463054 5 105 1.0 0.0 0.5 3.3 136 chr3R 15462918 intron AdamTS-A - chr3R 15462986 intron AdamTS-A - chr3R 15463054 intron AdamTS-A - chr3R_5_15460001 chr3R_15460001 D20-c5 1243 chr3R 15601146 15601196 chr3R 15608693 15608735 412 12 7545 2.5 2.5 2.5 3.4 7589 chr3R 15601146 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608735 intergenic not near genes chr3R_12_15600001 chr3R_15600001 D20-c5 1244 chr3R 15618739 15618759 chr3R 15626236 15626250 blood 4 7496 0.5 0.5 0.5 2.7 7511 chr3R 15618739 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626250 intergenic not near genes chr3R_4_15620001 chr3R_15620001 D20-c5 1245 chr3R 15635192 15635232 chr3R 15635337 15635369 4 142 0.0 1.5 0.8 2.2 177 chr3R 15635192 intergenic CG43335 + chr3R 15635280 intergenic CG43335 + chr3R 15635369 intergenic CG43335 + chr3R_4_15635001 chr3R_15635001 D20-c5 1246 chr3R 16472572 16472587 chr3R 16472672 16472688 7 99 4.0 8.5 6.2 1.0 116 chr3R 16472572 intergenic Gyc-89Da + chr3R 16472630 5` UTR Gyc-89Da + chr3R 16472688 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 D20-c5 1247 chr3R 16519906 16519932 chr3R 16520024 16520050 7 117 7.0 5.0 6.0 1.0 144 chr3R 16519906 intron CG42342 + chr3R 16519978 intron CG42342 + chr3R 16520050 intron CG42342 + chr3R_7_16515001 chr3R_16515001 D20-c5 1248 chr3R 16582887 16582908 chr3R 16582989 16583012 7 104 4.5 4.0 4.2 1.3 125 chr3R 16582887 intron Scp2 - chr3R 16582950 intron Scp2 - chr3R 16583012 intron Scp2 - chr3R_7_16580001 chr3R_16580001 D20-c5 1249 chr3R 16756312 16756348 chr3R 16762528 16762564 diver 5 6216 0.5 1.5 1.0 2.5 6252 chr3R 16756312 intron bxd - chr3R 16759438 intron bxd - chr3R 16762564 intron bxd - chr3R_5_16755001 chr3R_16755001 D20-c5 1250 chr3R 17294654 17294667 chr3R 17295106 17295120 BS 6 453 1.5 2.0 1.8 2.1 466 chr3R 17294654 intergenic not near genes chr3R 17294887 intergenic not near genes chr3R 17295120 intergenic not near genes chr3R_6_17290001 chr3R_17290001 D20-c5 1251 chr3R 17335138 17335187 chr3R 17335239 17335288 6 100 3.0 2.5 2.8 1.6 150 chr3R 17335138 intron beat-IIa - chr3R 17335213 intron beat-IIa - chr3R 17335288 intron beat-IIa - chr3R_6_17335001 chr3R_17335001 D20-c5 1252 chr3R 17346247 17346247 chr3R 21907534 21907535 5 4561288 14.0 13.5 13.8 0.3 4561288 chr3R 17346247 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_5_19625001 chr3R_19625001 D20-c5 1253 chr3R 17355468 17355523 chr3R 17355571 17355626 11 102 2.0 2.0 2.0 3.7 158 chr3R 17355468 intron beat-IIa - chr3R 17355547 intron beat-IIa - chr3R 17355626 intron beat-IIa - chr3R_11_17355001 chr3R_17355001 D20-c5 1254 chr3R 17371384 17371413 chr3R 17371477 17371514 7 100 2.0 1.5 1.8 2.5 130 chr3R 17371384 3` UTR CR44256 - chr3R 17371449 3` UTR CR44256 - chr3R 17371514 3` UTR CR44256 - chr3R_7_17370001 chr3R_17370001 D20-c5 1255 chr3R 17415944 17415987 chr3R 17416049 17416092 16 103 5.0 4.0 4.5 2.9 148 chr3R 17415944 exon CG5866 + chr3R 17416018 exon CG5866 + chr3R 17416092 exon CG5866 + chr3R_16_17415001 chr3R_17415001 D20-c5 1256 chr3R 17461176 17461230 chr3R 17461283 17461337 4 105 1.0 1.0 1.0 2.0 161 chr3R 17461176 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461337 intergenic not near genes chr3R_4_17460001 chr3R_17460001 D20-c5 1257 chr3R 17467596 17467622 chr3R 17467732 17467758 5 136 0.5 2.5 1.5 2.0 162 chr3R 17467596 intergenic not near genes chr3R 17467677 intergenic not near genes chr3R 17467758 intergenic not near genes chr3R_5_17465001 chr3R_17465001 D20-c5 1258 chr3R 17586690 17586745 chr3R 17586819 17586875 6 128 1.0 2.0 1.5 2.4 185 chr3R 17586690 intergenic not near genes chr3R 17586782 intergenic not near genes chr3R 17586875 intergenic not near genes chr3R_6_17585001 chr3R_17585001 D20-c5 1259 chr3R 17591270 17591318 chr3R 17591730 17591779 F-element 7 459 1.0 3.0 2.0 2.3 509 chr3R 17591270 intergenic not near genes chr3R 17591524 intergenic not near genes chr3R 17591779 intergenic not near genes chr3R_7_17590001 chr3R_17590001 D20-c5 1260 chr3R 17739161 17739218 chr3R 17739268 17739308 18 103 3.5 0.5 2.0 6.0 147 chr3R 17739161 intron TyrRII + chr3R 17739234 intron TyrRII + chr3R 17739308 intron TyrRII + chr3R_18_17735001 chr3R_17735001 D20-c5 1261 chr3R 17823185 17823216 chr3R 17823295 17823326 10 110 0.0 1.5 0.8 5.6 141 chr3R 17823185 intron tinc + chr3R 17823256 intron tinc + chr3R 17823326 intron tinc + chr3R_10_17820001 chr3R_17820001 D20-c5 1262 chr3R 17845206 17845216 chr3R 17845300 17845314 4 99 2.0 8.0 5.0 0.7 108 chr3R 17845206 intron tinc + chr3R 17845260 intron tinc + chr3R 17845314 intron tinc + chr3R_4_17845001 chr3R_17845001 D20-c5 1263 chr3R 17856025 17856039 chr3R 17856150 17856154 5 123 2.5 0.5 1.5 2.0 129 chr3R 17856025 intron tinc + chr3R 17856090 intron tinc + chr3R 17856154 intron tinc + chr3R_5_17855001 chr3R_17855001 D20-c5 1264 chr3R 17898347 17898352 chr3R 17898454 17898459 4 107 6.5 8.5 7.5 0.5 112 chr3R 17898347 intron Rim - chr3R 17898403 intron Rim - chr3R 17898459 intron Rim - chr3R_4_17895001 chr3R_17895001 D20-c5 1265 chr3R 17925834 17925872 chr3R 17927326 17927364 hobo 9 1489 2.5 6.0 4.2 1.7 1530 chr3R 17925834 intron cpo + chr3R 17926599 intron cpo + chr3R 17927364 intron cpo + chr3R_9_17925001 chr3R_17925001 D20-c5 1266 chr3R 18067955 18068018 chr3R 18068076 18068125 4 110 0.0 1.5 0.8 2.2 170 chr3R 18067955 intergenic not near genes chr3R 18068040 intergenic not near genes chr3R 18068125 intergenic not near genes chr3R_4_18065001 chr3R_18065001 D20-c5 1267 chr3R 18299265 18299317 chr3R 18302609 18302661 10 3346 27.0 18.0 22.5 0.4 3396 chr3R 18299265 5` UTR Dlc90F + chr3R 18300963 exon CG18600 - chr3R 18302661 exon CG7126 - chr3R_10_18300001 chr3R_18300001 D20-c5 1268 chr3R 18501591 18501617 chr3R 18501697 18501723 8 106 1.5 4.0 2.8 2.1 132 chr3R 18501591 intron fru - chr3R 18501657 intron fru - chr3R 18501723 intron fru - chr3R_8_18500001 chr3R_18500001 D20-c5 1269 chr3R 18528342 18528393 chr3R 18528454 18528504 4 110 1.0 0.0 0.5 2.7 162 chr3R 18528342 intron fru - chr3R 18528423 intron fru - chr3R 18528504 intron fru - chr3R_4_18525001 chr3R_18525001 D20-c5 1270 chr3R 18644086 18644135 chr3R 18644188 18644235 7 101 1.5 1.5 1.5 2.8 149 chr3R 18644086 intron qin + chr3R 18644160 intron qin + chr3R 18644235 intron qin + chr3R_7_18640001 chr3R_18640001 D20-c5 1271 chr3R 18781666 18781722 chr3R 18781767 18781823 9 98 1.0 0.5 0.8 5.0 157 chr3R 18781666 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781823 intron CG7720 - chr3R_9_18780001 chr3R_18780001 D20-c5 1272 chr3R 18839791 18839825 chr3R 18839900 18839932 7 108 2.5 3.5 3.0 1.8 141 chr3R 18839791 intron CG18208 - chr3R 18839862 intron CG18208 - chr3R 18839932 intron CG18208 - chr3R_7_18835001 chr3R_18835001 D20-c5 1273 chr3R 18887580 18887591 chr3R 18887686 18887696 4 106 6.5 3.0 4.8 0.7 116 chr3R 18887580 intergenic not near genes chr3R 18887638 intergenic not near genes chr3R 18887696 intergenic not near genes chr3R_4_18885001 chr3R_18885001 D20-c5 1274 chr3R 19193002 19193008 chr3R 19197283 19197337 F-element 4 4302 0.5 1.0 0.8 2.2 4335 chr3R 19193002 intron CG31475 + chr3R 19195170 intron CG31475 + chr3R 19197337 intron CG31475 + chr3R_4_19195001 chr3R_19195001 D20-c5 1275 chr3R 19280529 19280575 chr3R 19280630 19280676 6 101 2.0 1.5 1.8 2.1 147 chr3R 19280529 intergenic not near genes chr3R 19280602 intergenic not near genes chr3R 19280676 intergenic not near genes chr3R_6_19280001 chr3R_19280001 D20-c5 1276 chr3R 19490419 19490469 chr3R 19490533 19490583 7 113 3.5 3.0 3.2 1.7 164 chr3R 19490419 intron,exon Dys +,CG15025 - chr3R 19490501 intron,intron Dys +,CG15025 - chr3R 19490583 intron,exon Dys +,CG15025 - chr3R_7_19490001 chr3R_19490001 D20-c5 1277 chr3R 19590624 19590683 chr3R 19590741 19590792 7 115 0.0 4.5 2.2 2.2 168 chr3R 19590624 exon Dys + chr3R 19590708 intron Dys + chr3R 19590792 exon Dys + chr3R_7_19590001 chr3R_19590001 D20-c5 1278 chr3R 19599066 19599092 chr3R 19599292 19599346 6 249 3.0 2.5 2.8 1.6 280 chr3R 19599066 intergenic Cpr92A - chr3R 19599206 intergenic Cpr92A - chr3R 19599346 intergenic Cpr92A - chr3R_6_19595001 chr3R_19595001 D20-c5 1279 chr3R 19953926 19953978 chr3R 19954028 19954077 10 101 2.0 2.0 2.0 3.3 151 chr3R 19953926 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954077 intron Hs6st - chr3R_10_19950001 chr3R_19950001 D20-c5 1280 chr3R 19964991 19965036 chr3R 19965103 19965150 5 114 1.5 0.5 1.0 2.5 159 chr3R 19964991 intron Hs6st - chr3R 19965070 intron Hs6st - chr3R 19965150 intron Hs6st - chr3R_5_19965001 chr3R_19965001 D20-c5 1281 chr3R 20008812 20008856 chr3R 20008918 20008918 8 100 0.5 2.0 1.2 3.6 106 chr3R 20008812 intergenic MED25 +,Hs6st - chr3R 20008865 intergenic MED25 +,Hs6st - chr3R 20008918 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 D20-c5 1282 chr3R 17985797 17985799 chr3R 20294182 20294184 4 2308385 6.0 23.5 14.8 0.3 2308387 chr3R 17985797 intron cpo + chr3R 19139990 3` UTR Ppcs - chr3R 20294184 exon cic + chr3R_4_19135001 chr3R_19135001 D20-c5 1283 chr3R 20330976 20331019 chr3R 20331487 20331528 roo 5 511 1.0 0.0 0.5 3.3 552 chr3R 20330976 intergenic Sirt2 + chr3R 20331252 intergenic Sirt2 + chr3R 20331528 intergenic not near genes chr3R_5_20330001 chr3R_20330001 D20-c5 1284 chr3R 20661327 20661361 chr3R 20661609 20661643 7 282 1.0 1.5 1.2 3.2 316 chr3R 20661327 intergenic not near genes chr3R 20661485 intergenic not near genes chr3R 20661643 intergenic not near genes chr3R_7_20660001 chr3R_20660001 D20-c5 1285 chr3R 20787415 20787444 chr3R 20787531 20787559 8 116 1.5 2.0 1.8 2.9 144 chr3R 20787415 intron Syp + chr3R 20787487 intron Syp + chr3R 20787559 intron Syp + chr3R_8_20785001 chr3R_20785001 D20-c5 1286 chr3R 20841564 20841597 chr3R 20841752 20841785 4 188 0.5 3.0 1.8 1.4 221 chr3R 20841564 intergenic not near genes chr3R 20841674 intergenic CG15695 + chr3R 20841785 intergenic CG15695 + chr3R_4_20840001 chr3R_20840001 D20-c5 1287 chr3R 20870224 20870281 chr3R 20870334 20870391 16 107 2.5 4.0 3.2 3.8 167 chr3R 20870224 intergenic not near genes chr3R 20870308 intergenic not near genes chr3R 20870391 intergenic not near genes chr3R_16_20870001 chr3R_20870001 D20-c5 1288 chr3R 20901330 20901364 chr3R 20901441 20901475 9 110 6.5 2.5 4.5 1.6 145 chr3R 20901330 intergenic not near genes chr3R 20901402 intergenic not near genes chr3R 20901475 intergenic CG5621 + chr3R_9_20900001 chr3R_20900001 D20-c5 1289 chr3R 21013983 21014040 chr3R 21014085 21014143 4 102 1.5 3.0 2.2 1.2 160 chr3R 21013983 3` UTR Calx + chr3R 21014063 3` UTR Calx + chr3R 21014143 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 D20-c5 1290 chr3R 21021615 21021662 chr3R 21021722 21021770 14 104 4.0 4.5 4.2 2.7 155 chr3R 21021615 intron CG17278 - chr3R 21021692 intron CG17278 - chr3R 21021770 intron CG17278 - chr3R_14_21020001 chr3R_21020001 D20-c5 1291 chr3R 21141650 21141677 chr3R 21150156 21150179 Tirant 11 8505 7.5 2.5 5.0 1.8 8529 chr3R 21141650 intron SNF4Agamma + chr3R 21145914 intron SNF4Agamma + chr3R 21150179 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 D20-c5 1292 chr3R 21200382 21200427 chr3R 21200484 21200529 7 98 2.5 2.0 2.2 2.2 147 chr3R 21200382 intron SNF4Agamma + chr3R 21200456 intron SNF4Agamma + chr3R 21200529 intron SNF4Agamma + chr3R_7_21200001 chr3R_21200001 D20-c5 1293 chr3R 21506861 21506908 chr3R 21506972 21507013 5 108 1.0 1.0 1.0 2.5 152 chr3R 21506861 intron C15 + chr3R 21506937 intron C15 + chr3R 21507013 intron C15 + chr3R_5_21505001 chr3R_21505001 D20-c5 1294 chr3R 21519967 21520124 chr3R 21520093 21520235 7 124 0.0 0.0 0.0 7.0 268 chr3R 21519967 intergenic not near genes chr3R 21520101 intergenic not near genes chr3R 21520235 intergenic not near genes chr3R_7_21520001 chr3R_21520001 D20-c5 1295 chr3R 21624079 21624117 chr3R 21624197 21624236 6 119 1.5 1.5 1.5 2.4 157 chr3R 21624079 exon E2f - chr3R 21624158 intron E2f - chr3R 21624236 intron E2f - chr3R_6_21620001 chr3R_21620001 D20-c5 1296 chr3R 21709537 21709579 chr3R 21709969 21710011 8 433 1.0 1.5 1.2 3.6 474 chr3R 21709537 intron CG31176 - chr3R 21709774 intron CG31176 - chr3R 21710011 intron CG31176 - chr3R_8_21705001 chr3R_21705001 D20-c5 1297 chr3R 21757216 21757252 chr3R 21758423 21758446 4 1197 27.0 6.0 16.5 0.2 1230 chr3R 21757216 exon CG31198 + chr3R 21757831 intergenic CG31198 + chr3R 21758446 intergenic CG42335 + chr3R_4_21755001 chr3R_21755001 D20-c5 1298 chr3R 21761105 21761155 chr3R 21768515 21768572 mdg1 16 7412 1.0 1.5 1.2 7.3 7467 chr3R 21761105 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768572 exon CG42335 + chr3R_16_21760001 chr3R_21760001 D20-c5 1299 chr3R 21845866 21845918 chr3R 21846060 21846114 4 196 1.5 1.5 1.5 1.6 248 chr3R 21845866 5` UTR,exon CR44087 +,Gr93d - chr3R 21845990 intron,exon CR44087 +,Gr93d - chr3R 21846114 5` UTR,exon CR44087 +,Gr93d - chr3R_4_21845001 chr3R_21845001 D20-c5 1300 chr3R 8339241 8339247 chr3R 21907534 21907534 15 13568288 11.5 13.5 12.5 1.1 13568293 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 D20-c5 1301 chr3R 9620954 9620956 chr3R 21907534 21907534 6 12286578 4.5 13.5 9.0 0.6 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 D20-c5 1302 chr3R 15286988 15286988 chr3R 21907534 21907534 4 6620546 7.5 13.5 10.5 0.3 6620546 chr3R 15286988 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 D20-c5 1303 chr3R 21907534 21907534 chr3R 28831801 28831803 62 6924268 14.5 14.5 14.5 4.0 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_62_25365001 chr3R_25365001 D20-c5 1304 chr3R 8339246 8339247 chr3R 21907535 21907535 10 13568288 11.5 13.5 12.5 0.7 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 D20-c5 1305 chr3R 9620956 9620956 chr3R 21907535 21907535 6 12286579 4.5 13.5 9.0 0.6 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 D20-c5 1306 chr3R 21907535 21907535 chr3R 28831799 28831804 48 6924266 14.5 14.5 14.5 3.1 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_48_25365001 chr3R_25365001 D20-c5 1307 chr3R 8339246 8339247 chr3R 21907536 21907536 7 13568289 11.5 13.5 12.5 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 D20-c5 1308 chr3R 21907536 21907536 chr3R 28831799 28831802 86 6924266 14.5 14.5 14.5 5.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_86_25365001 chr3R_25365001 D20-c5 1309 chr3R 22055557 22055582 chr3R 22055768 22055796 8 214 2.0 6.5 4.2 1.5 239 chr3R 22055557 intron how + chr3R 22055676 intron how + chr3R 22055796 intron how + chr3R_8_22055001 chr3R_22055001 D20-c5 1310 chr3R 22081601 22081601 chr3R 26855367 26855367 4 4773766 2.0 4.0 3.0 1.0 4773766 chr3R 22081601 intron CG13408 + chr3R 24468484 intergenic not near genes chr3R 26855367 intron Lerp - chr3R_4_24465001 chr3R_24465001 D20-c5 1311 chr3R 22144972 22144998 chr3R 22145143 22145185 10 184 3.0 2.0 2.5 2.9 213 chr3R 22144972 intron SKIP + chr3R 22145078 intron SKIP + chr3R 22145185 intron SKIP + chr3R_10_22145001 chr3R_22145001 D20-c5 1312 chr3R 22153556 22153598 chr3R 22153661 22153703 8 104 3.0 2.0 2.5 2.3 147 chr3R 22153556 intron SKIP + chr3R 22153630 intron SKIP + chr3R 22153703 intron SKIP + chr3R_8_22150001 chr3R_22150001 D20-c5 1313 chr3R 22234071 22234097 chr3R 22234173 22234199 4 99 1.0 3.0 2.0 1.3 128 chr3R 22234071 intron SKIP + chr3R 22234135 intron SKIP + chr3R 22234199 intron SKIP + chr3R_4_22230001 chr3R_22230001 D20-c5 1314 chr3R 22252797 22252849 chr3R 22252927 22252946 10 117 3.0 0.0 1.5 4.0 149 chr3R 22252797 intron SKIP + chr3R 22252872 intron SKIP + chr3R 22252946 intron SKIP + chr3R_10_22250001 chr3R_22250001 D20-c5 1315 chr3R 22253828 22253881 chr3R 22253929 22253982 4 100 2.0 1.0 1.5 1.6 154 chr3R 22253828 intron SKIP + chr3R 22253905 intron SKIP + chr3R 22253982 intron SKIP + chr3R_4_22250001 chr3R_22250001 D20-c5 1316 chr3R 22433071 22433090 chr3R 22433196 22433215 5 125 7.0 2.5 4.8 0.9 144 chr3R 22433071 intron CG13847 - chr3R 22433143 intron CG13847 - chr3R 22433215 intron CG13847 - chr3R_5_22430001 chr3R_22430001 D20-c5 1317 chr3R 22437769 22437815 chr3R 22437884 22437930 4 115 0.5 3.0 1.8 1.4 161 chr3R 22437769 intergenic not near genes chr3R 22437850 intergenic not near genes chr3R 22437930 intergenic not near genes chr3R_4_22435001 chr3R_22435001 D20-c5 1318 chr3R 22450520 22450568 chr3R 22453185 22453233 NOF 12 2663 2.5 3.0 2.8 3.2 2713 chr3R 22450520 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453233 intron CG34376 + chr3R_12_22450001 chr3R_22450001 D20-c5 1319 chr3R 22531053 22531094 chr3R 22531164 22531203 6 110 2.5 4.0 3.2 1.4 150 chr3R 22531053 intron CG33093 - chr3R 22531128 exon CG33093 - chr3R 22531203 exon CG33093 - chr3R_6_22530001 chr3R_22530001 D20-c5 1320 chr3R 22538420 22538467 chr3R 22538528 22538577 7 106 2.5 1.0 1.8 2.5 157 chr3R 22538420 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538577 intron CG5326 - chr3R_7_22535001 chr3R_22535001 D20-c5 1321 chr3R 22640678 22640731 chr3R 22640818 22640870 12 138 4.0 1.5 2.8 3.2 192 chr3R 22640678 intron wake + chr3R 22640774 intron wake + chr3R 22640870 intron wake + chr3R_12_22640001 chr3R_22640001 D20-c5 1322 chr3R 22880584 22880611 chr3R 22880685 22880711 7 101 3.0 4.5 3.8 1.5 127 chr3R 22880584 intergenic not near genes chr3R 22880648 intergenic not near genes chr3R 22880711 intergenic not near genes chr3R_7_22880001 chr3R_22880001 D20-c5 1323 chr3R 22888990 22889041 chr3R 22889092 22889138 4 100 1.5 2.5 2.0 1.3 148 chr3R 22888990 intergenic not near genes chr3R 22889064 intergenic not near genes chr3R 22889138 intergenic not near genes chr3R_4_22885001 chr3R_22885001 D20-c5 1324 chr3R 22917972 22917979 chr3R 22918102 22918110 4 130 4.5 3.0 3.8 0.8 138 chr3R 22917972 intron klg + chr3R 22918041 intron klg + chr3R 22918110 intron klg + chr3R_4_22915001 chr3R_22915001 D20-c5 1325 chr3R 22974273 22974296 chr3R 22974381 22974405 6 109 0.0 3.0 1.5 2.4 132 chr3R 22974273 intergenic not near genes chr3R 22974339 intergenic not near genes chr3R 22974405 intergenic not near genes chr3R_6_22970001 chr3R_22970001 D20-c5 1326 chr3R 23083747 23083787 chr3R 23083866 23083917 15 130 2.0 4.5 3.2 3.6 170 chr3R 23083747 intron CG13830 - chr3R 23083832 intron CG13830 - chr3R 23083917 intron CG13830 - chr3R_15_23080001 chr3R_23080001 D20-c5 1327 chr3R 23100132 23100412 chr3R 23100244 23100518 11 110 6.5 2.5 4.5 2.0 386 chr3R 23100132 intron,exon CG13830 -,CG6738 + chr3R 23100325 intron,exon CG13830 -,CG6738 + chr3R 23100518 intron,exon CG13830 -,CG6738 + chr3R_11_23100001 chr3R_23100001 D20-c5 1328 chr3R 23197945 23197958 chr3R 23198049 23198062 6 104 2.5 0.5 1.5 2.4 117 chr3R 23197945 exon cnc - chr3R 23198004 intron cnc - chr3R 23198062 intron cnc - chr3R_6_23195001 chr3R_23195001 D20-c5 1329 chr3R 23346544 23346571 chr3R 23346648 23346675 5 103 1.5 1.0 1.2 2.3 131 chr3R 23346544 intergenic pnt - chr3R 23346610 intergenic pnt - chr3R 23346675 intergenic not near genes chr3R_5_23345001 chr3R_23345001 D20-c5 1330 chr3R 23497444 23497495 chr3R 23497563 23497614 5 119 2.5 1.0 1.8 1.8 170 chr3R 23497444 intergenic not near genes chr3R 23497529 intergenic not near genes chr3R 23497614 intergenic not near genes chr3R_5_23495001 chr3R_23495001 D20-c5 1331 chr3R 23498511 23498557 chr3R 23498826 23498879 5 318 9.0 17.0 13.0 0.4 368 chr3R 23498511 intergenic not near genes chr3R 23498695 intergenic not near genes chr3R 23498879 intergenic not near genes chr3R_5_23495001 chr3R_23495001 D20-c5 1332 chr3R 23558375 23558421 chr3R 23560181 23560227 Bari1 7 1806 1.5 1.0 1.2 3.2 1852 chr3R 23558375 intron beat-IV + chr3R 23559301 intron beat-IV + chr3R 23560227 intron beat-IV + chr3R_7_23555001 chr3R_23555001 D20-c5 1333 chr3R 23684675 23684722 chr3R 23685186 23685233 roo 11 510 4.5 7.5 6.0 1.6 558 chr3R 23684675 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685233 exon CG18754 + chr3R_11_23680001 chr3R_23680001 D20-c5 1334 chr3R 23688451 23688503 chr3R 23688567 23688618 13 111 2.5 0.0 1.2 5.9 167 chr3R 23688451 intergenic SPE + chr3R 23688534 intergenic SPE +,CG10254 - chr3R 23688618 intergenic CG10254 -,SPE + chr3R_13_23685001 chr3R_23685001 D20-c5 1335 chr3R 23835384 23835400 chr3R 23844559 23844575 roo 4 9175 4.0 0.0 2.0 1.3 9191 chr3R 23835384 intron CG34355 + chr3R 23839980 intron CG34355 + chr3R 23844575 intron CG34355 + chr3R_4_23835001 chr3R_23835001 D20-c5 1336 chr3R 23893756 23893811 chr3R 23893884 23893940 13 125 2.0 1.5 1.8 4.6 184 chr3R 23893756 intergenic tbrd-1 -,sba - chr3R 23893848 intergenic sba -,tbrd-1 - chr3R 23893940 intergenic sba - chr3R_13_23890001 chr3R_23890001 D20-c5 1337 chr3R 23944887 23944934 chr3R 23944997 23945044 10 110 1.5 4.0 2.8 2.6 157 chr3R 23944887 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945044 exon CG12268 - chr3R_10_23940001 chr3R_23940001 D20-c5 1338 chr3R 23968643 23968695 chr3R 23968750 23968802 9 106 26.5 27.0 26.8 0.3 159 chr3R 23968643 intron CG31140 + chr3R 23968722 intron CG31140 + chr3R 23968802 intron CG31140 + chr3R_9_23965001 chr3R_23965001 D20-c5 1339 chr3R 24042081 24042128 chr3R 24042262 24042318 11 187 2.0 2.5 2.2 3.4 237 chr3R 24042081 3` UTR spas + chr3R 24042200 3` UTR spas + chr3R 24042318 3` UTR spas + chr3R_11_24040001 chr3R_24040001 D20-c5 1340 chr3R 24072067 24072110 chr3R 24072529 24072571 jockey 8 462 5.5 0.0 2.8 2.1 504 chr3R 24072067 intron 4EHP - chr3R 24072319 intron 4EHP - chr3R 24072571 intron 4EHP - chr3R_8_24070001 chr3R_24070001 D20-c5 1341 chr3R 24076891 24076938 chr3R 24078383 24078430 hobo 14 1490 4.5 2.5 3.5 3.1 1539 chr3R 24076891 intron 4EHP - chr3R 24077660 intron 4EHP - chr3R 24078430 intron 4EHP - chr3R_14_24075001 chr3R_24075001 D20-c5 1342 chr3R 24670146 24670199 chr3R 24670255 24670307 4 109 0.5 3.0 1.8 1.4 161 chr3R 24670146 intron slo + chr3R 24670226 intron slo + chr3R 24670307 intron slo + chr3R_4_24670001 chr3R_24670001 D20-c5 1343 chr3R 24671194 24671251 chr3R 24671296 24671353 9 101 1.5 2.5 2.0 3.0 159 chr3R 24671194 intron slo + chr3R 24671274 intron slo + chr3R 24671353 intron slo + chr3R_9_24670001 chr3R_24670001 D20-c5 1344 chr3R 24725540 24725567 chr3R 24725654 24725681 6 114 4.5 0.5 2.5 1.7 141 chr3R 24725540 intron tok + chr3R 24725610 intron tok + chr3R 24725681 intron tok + chr3R_6_24725001 chr3R_24725001 D20-c5 1345 chr3R 24743014 24743063 chr3R 24743124 24743170 7 110 0.0 3.0 1.5 2.8 156 chr3R 24743014 intron tok + chr3R 24743092 intron tok + chr3R 24743170 exon tok + chr3R_7_24740001 chr3R_24740001 D20-c5 1346 chr3R 24888077 24888134 chr3R 24888259 24888316 17 180 3.5 3.0 3.2 4.0 239 chr3R 24888077 intron CG31121 - chr3R 24888196 intron CG31121 - chr3R 24888316 intron CG31121 - chr3R_17_24885001 chr3R_24885001 D20-c5 1347 chr3R 24888785 24888821 chr3R 24888950 24888969 4 161 1.5 0.5 1.0 2.0 184 chr3R 24888785 intron CG31121 - chr3R 24888877 intron CG31121 - chr3R 24888969 intron CG31121 - chr3R_4_24885001 chr3R_24885001 D20-c5 1348 chr3R 24927111 24927152 chr3R 24931926 24931966 Doc 9 4815 2.0 2.0 2.0 3.0 4855 chr3R 24927111 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931966 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 D20-c5 1349 chr3R 24974893 24974929 chr3R 24974997 24975033 6 104 0.5 3.0 1.8 2.1 140 chr3R 24974893 intergenic not near genes chr3R 24974963 intergenic not near genes chr3R 24975033 intergenic not near genes chr3R_6_24970001 chr3R_24970001 D20-c5 1350 chr3R 25004875 25004917 chr3R 25004983 25005025 9 107 4.0 2.0 3.0 2.2 150 chr3R 25004875 intron tnc + chr3R 25004950 intron tnc + chr3R 25005025 intron tnc + chr3R_9_25000001 chr3R_25000001 D20-c5 1351 chr3R 25018234 25018248 chr3R 25018336 25018343 4 100 4.0 4.0 4.0 0.8 109 chr3R 25018234 exon tnc + chr3R 25018288 exon tnc + chr3R 25018343 exon tnc + chr3R_4_25015001 chr3R_25015001 D20-c5 1352 chr3R 25018250 25018287 chr3R 25018333 25018389 10 100 3.0 4.5 3.8 2.1 139 chr3R 25018250 exon tnc + chr3R 25018320 exon tnc + chr3R 25018389 exon tnc + chr3R_10_25015001 chr3R_25015001 D20-c5 1353 chr3R 25209581 25209619 chr3R 25209679 25209726 9 106 0.0 3.0 1.5 3.6 145 chr3R 25209581 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209726 intron CG13654 + chr3R_9_25205001 chr3R_25205001 D20-c5 1354 chr3R 25689103 25689158 chr3R 25689234 25689290 7 131 1.5 1.5 1.5 2.8 187 chr3R 25689103 intergenic not near genes chr3R 25689196 intergenic not near genes chr3R 25689290 intergenic not near genes chr3R_7_25685001 chr3R_25685001 D20-c5 1355 chr3R 25725812 25725854 chr3R 25734997 25735038 roo 5 9183 0.5 0.5 0.5 3.3 9226 chr3R 25725812 intron LpR2 - chr3R 25730425 intron LpR2 - chr3R 25735038 intron LpR2 - chr3R_5_25730001 chr3R_25730001 D20-c5 1356 chr3R 25805357 25805400 chr3R 25805586 25805629 5 229 1.5 2.5 2.0 1.7 272 chr3R 25805357 intergenic not near genes chr3R 25805493 intergenic not near genes chr3R 25805629 intergenic not near genes chr3R_5_25805001 chr3R_25805001 D20-c5 1357 chr3R 25832682 25832714 chr3R 25841887 25841920 roo 5 9206 3.5 4.5 4.0 1.0 9238 chr3R 25832682 exon alpha4GT2 + chr3R 25837301 intron alpha4GT2 + chr3R 25841920 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 D20-c5 1358 chr3R 25885272 25885312 chr3R 25885383 25885422 7 111 4.0 5.5 4.8 1.2 150 chr3R 25885272 5` UTR SppL + chr3R 25885347 intron SppL + chr3R 25885422 5` UTR SppL + chr3R_7_25885001 chr3R_25885001 D20-c5 1359 chr3R 26060392 26060416 chr3R 26060503 26060527 9 111 6.5 4.5 5.5 1.4 135 chr3R 26060392 intron CG14544 + chr3R 26060460 intron CG14544 + chr3R 26060527 intron CG14544 + chr3R_9_26060001 chr3R_26060001 D20-c5 1360 chr3R 26060421 26060432 chr3R 26060488 26060543 5 102 3.5 3.0 3.2 1.2 122 chr3R 26060421 intron CG14544 + chr3R 26060482 intron CG14544 + chr3R 26060543 intron CG14544 + chr3R_5_26060001 chr3R_26060001 D20-c5 1361 chr3R 26093824 26093862 chr3R 26093926 26093965 8 102 3.5 0.5 2.0 2.7 141 chr3R 26093824 intron dys - chr3R 26093894 intron dys - chr3R 26093965 intron dys - chr3R_8_26090001 chr3R_26090001 D20-c5 1362 chr3R 26108799 26108811 chr3R 26117407 26117419 Tirant 5 8608 4.5 0.0 2.2 1.6 8620 chr3R 26108799 5` UTR CG31324 + chr3R 26113109 intron CG31324 + chr3R 26117419 intron CG31324 + chr3R_5_26110001 chr3R_26110001 D20-c5 1363 chr3R 26284223 26284250 chr3R 26284354 26284382 4 132 2.0 2.0 2.0 1.3 159 chr3R 26284223 intergenic not near genes chr3R 26284302 intergenic not near genes chr3R 26284382 intergenic not near genes chr3R_4_26280001 chr3R_26280001 D20-c5 1364 chr3R 26294695 26294738 chr3R 26294798 26294841 6 103 1.5 1.0 1.2 2.7 146 chr3R 26294695 intergenic not near genes chr3R 26294768 intergenic not near genes chr3R 26294841 intergenic not near genes chr3R_6_26290001 chr3R_26290001 D20-c5 1365 chr3R 26376303 26376339 chr3R 26385488 26385524 roo 5 9185 3.5 0.0 1.8 1.8 9221 chr3R 26376303 intergenic not near genes chr3R 26380914 intergenic not near genes chr3R 26385524 intergenic not near genes chr3R_5_26380001 chr3R_26380001 D20-c5 1366 chr3R 26390430 26390457 chr3R 26390550 26390577 4 120 1.5 1.0 1.2 1.8 147 chr3R 26390430 intergenic not near genes chr3R 26390504 intergenic not near genes chr3R 26390577 intergenic not near genes chr3R_4_26390001 chr3R_26390001 D20-c5 1367 chr3R 26456779 26456832 chr3R 26459298 26459350 8 2519 20.5 39.5 30.0 0.3 2571 chr3R 26456779 intergenic CG14237 + chr3R 26458064 intergenic CG14238 + chr3R 26459350 exon CG14238 + chr3R_8_26455001 chr3R_26455001 D20-c5 1368 chr3R 26542019 26542072 chr3R 26542135 26542188 6 116 2.0 2.5 2.2 1.9 169 chr3R 26542019 intron scrib + chr3R 26542104 intron scrib + chr3R 26542188 intron scrib + chr3R_6_26540001 chr3R_26540001 D20-c5 1369 chr3R 26558309 26558359 chr3R 26565647 26565675 Stalker4 6 7334 1.5 3.0 2.2 1.9 7366 chr3R 26558309 intron scrib + chr3R 26561992 intron scrib + chr3R 26565675 intron scrib + chr3R_6_26560001 chr3R_26560001 D20-c5 1370 chr3R 26574996 26575037 chr3R 26575099 26575140 6 104 5.0 4.0 4.5 1.1 144 chr3R 26574996 exon scrib + chr3R 26575068 intron scrib + chr3R 26575140 intron scrib + chr3R_6_26575001 chr3R_26575001 D20-c5 1371 chr3R 26641615 26641660 chr3R 26641727 26641772 11 111 2.5 3.5 3.0 2.8 157 chr3R 26641615 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641772 intergenic not near genes chr3R_11_26640001 chr3R_26640001 D20-c5 1372 chr3R 26642716 26642746 chr3R 26643132 26643164 jockey 5 417 1.5 0.5 1.0 2.5 448 chr3R 26642716 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643164 intergenic not near genes chr3R_5_26640001 chr3R_26640001 D20-c5 1373 chr3R 26669644 26669690 chr3R 26669751 26669797 6 104 0.0 1.0 0.5 4.0 153 chr3R 26669644 intron beat-VII - chr3R 26669720 intron beat-VII - chr3R 26669797 intron beat-VII - chr3R_6_26665001 chr3R_26665001 D20-c5 1374 chr3R 26727601 26727644 chr3R 26727764 26727807 4 160 2.0 0.5 1.2 1.8 206 chr3R 26727601 intron CG14246 + chr3R 26727704 intron CG14246 + chr3R 26727807 intron CG14246 + chr3R_4_26725001 chr3R_26725001 D20-c5 1375 chr3R 26810541 26810584 chr3R 26811051 26811094 roo 9 507 0.5 2.5 1.5 3.6 553 chr3R 26810541 intron Tl + chr3R 26810818 intron Tl + chr3R 26811094 intron Tl + chr3R_9_26810001 chr3R_26810001 D20-c5 1376 chr3R 26816727 26816757 chr3R 26816845 26816875 5 118 2.5 7.5 5.0 0.8 148 chr3R 26816727 intron Tl + chr3R 26816801 intron Tl + chr3R 26816875 intron Tl + chr3R_5_26815001 chr3R_26815001 D20-c5 1377 chr3R 26845550 26845590 chr3R 26845655 26845695 4 105 1.0 2.5 1.8 1.4 145 chr3R 26845550 intron Lerp - chr3R 26845622 intron Lerp - chr3R 26845695 intron Lerp - chr3R_4_26845001 chr3R_26845001 D20-c5 1378 chr3R 26898215 26898223 chr3R 26898328 26898336 4 113 5.5 1.0 3.2 1.0 121 chr3R 26898215 intron T48 + chr3R 26898276 intron T48 + chr3R 26898336 intron T48 + chr3R_4_26895001 chr3R_26895001 D20-c5 1379 chr3R 27007386 27007432 chr3R 27016545 27016592 roo 4 9157 1.5 0.5 1.0 2.0 9206 chr3R 27007386 intron RYa-R + chr3R 27011989 intron RYa-R + chr3R 27016592 intron RYa-R + chr3R_4_27010001 chr3R_27010001 D20-c5 1380 chr3R 27028709 27028744 chr3R 27028813 27028848 7 104 3.5 4.0 3.8 1.5 139 chr3R 27028709 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028848 intron RYa-R + chr3R_7_27025001 chr3R_27025001 D20-c5 1381 chr3R 27034517 27034576 chr3R 27035069 27035128 12 549 3.5 0.5 2.0 4.0 611 chr3R 27034517 intron RYa-R + chr3R 27034822 intron RYa-R + chr3R 27035128 intron RYa-R + chr3R_12_27030001 chr3R_27030001 D20-c5 1382 chr3R 27140496 27140535 chr3R 27148131 27148170 412 8 7635 5.5 5.0 5.2 1.3 7674 chr3R 27140496 intron CG6051 - chr3R 27144333 intron CG6051 - chr3R 27148170 intron CG6051 - chr3R_8_27140001 chr3R_27140001 D20-c5 1383 chr3R 27292266 27292306 chr3R 27292392 27292442 9 135 5.0 3.5 4.2 1.7 176 chr3R 27292266 intergenic CG3348 - chr3R 27292354 intergenic CG3348 - chr3R 27292442 intergenic CG3348 - chr3R_9_27290001 chr3R_27290001 D20-c5 1384 chr3R 27342785 27342820 chr3R 27351391 27351426 Tirant 7 8605 2.5 3.5 3.0 1.8 8641 chr3R 27342785 intron CG42534 + chr3R 27347106 intron CG42534 + chr3R 27351426 intron CG42534 + chr3R_7_27345001 chr3R_27345001 D20-c5 1385 chr3R 27377450 27377501 chr3R 27377560 27377614 13 111 2.0 1.0 1.5 5.2 164 chr3R 27377450 3` UTR side - chr3R 27377532 3` UTR side - chr3R 27377614 3` UTR side - chr3R_13_27375001 chr3R_27375001 D20-c5 1386 chr3R 27385678 27385719 chr3R 27385974 27386013 7 294 2.0 3.0 2.5 2.0 335 chr3R 27385678 intron side - chr3R 27385846 intron side - chr3R 27386013 intron side - chr3R_7_27385001 chr3R_27385001 D20-c5 1387 chr3R 27521140 27521184 chr3R 27530374 27530418 roo 4 9232 1.5 2.0 1.8 1.4 9278 chr3R 27521140 intron CG12885 + chr3R 27525779 intron CG12885 + chr3R 27530418 intron CG12885 + chr3R_4_27525001 chr3R_27525001 D20-c5 1388 chr3R 27679915 27679948 chr3R 27680063 27680096 6 147 6.0 4.0 5.0 1.0 181 chr3R 27679915 exon CG12883 + chr3R 27680006 3` UTR CG12883 + chr3R 27680096 3` UTR CG12883 + chr3R_6_27680001 chr3R_27680001 D20-c5 1389 chr3R 27685738 27685792 chr3R 27685842 27685888 11 98 1.5 2.0 1.8 3.9 150 chr3R 27685738 3` UTR CG31055 - chr3R 27685813 3` UTR CG31055 - chr3R 27685888 3` UTR CG31055 - chr3R_11_27685001 chr3R_27685001 D20-c5 1390 chr3R 27718573 27718595 chr3R 27718677 27718699 4 104 2.0 6.0 4.0 0.8 126 chr3R 27718573 intergenic not near genes chr3R 27718636 intergenic not near genes chr3R 27718699 intergenic not near genes chr3R_4_27715001 chr3R_27715001 D20-c5 1391 chr3R 27725546 27725588 chr3R 27731013 27731054 I-element 5 5467 1.5 3.0 2.2 1.6 5508 chr3R 27725546 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731054 intergenic not near genes chr3R_5_27725001 chr3R_27725001 D20-c5 1392 chr3R 27779246 27779274 chr3R 27779351 27779378 9 105 6.0 4.5 5.2 1.5 132 chr3R 27779246 exon CG34353 - chr3R 27779312 intron CG34353 - chr3R 27779378 intron CG34353 - chr3R_9_27775001 chr3R_27775001 D20-c5 1393 chr3R 27856745 27856779 chr3R 27858253 27858287 hopper2 9 1508 3.0 2.0 2.5 2.6 1542 chr3R 27856745 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858287 intron CG34353 - chr3R_9_27855001 chr3R_27855001 D20-c5 1394 chr3R 27875685 27875698 chr3R 27882765 27882776 297 5 7080 2.5 2.5 2.5 1.4 7091 chr3R 27875685 intron CG34353 - chr3R 27879230 intron CG34353 - chr3R 27882776 intron CG34353 - chr3R_5_27875001 chr3R_27875001 D20-c5 1395 chr3R 27941649 27941687 chr3R 27941769 27941810 14 122 0.5 6.0 3.2 3.3 161 chr3R 27941649 exon CG5514 + chr3R 27941730 exon CG5514 + chr3R 27941810 exon CG5514 + chr3R_14_27940001 chr3R_27940001 D20-c5 1396 chr3R 27973846 27973880 chr3R 27973952 27973986 7 105 3.5 2.5 3.0 1.8 140 chr3R 27973846 intron betaTub97EF - chr3R 27973916 intron betaTub97EF - chr3R 27973986 intron betaTub97EF - chr3R_7_27970001 chr3R_27970001 D20-c5 1397 chr3R 28068482 28068519 chr3R 28073949 28073983 I-element 6 5466 0.0 2.5 1.2 2.7 5501 chr3R 28068482 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073983 intron CG34362 + chr3R_6_28070001 chr3R_28070001 D20-c5 1398 chr3R 28253321 28253367 chr3R 28255856 28255901 jockey 7 2534 3.0 1.0 2.0 2.3 2580 chr3R 28253321 intergenic not near genes chr3R 28254611 intergenic not near genes chr3R 28255901 intergenic not near genes chr3R_7_28250001 chr3R_28250001 D20-c5 1399 chr3R 28380785 28380797 chr3R 28381042 28381055 5 258 4.5 3.5 4.0 1.0 270 chr3R 28380785 intergenic not near genes chr3R 28380920 intergenic not near genes chr3R 28381055 intergenic not near genes chr3R_5_28380001 chr3R_28380001 D20-c5 1400 chr3R 28380814 28380822 chr3R 28381037 28381080 4 249 2.5 3.0 2.8 1.1 266 chr3R 28380814 intergenic not near genes chr3R 28380947 intergenic not near genes chr3R 28381080 intergenic not near genes chr3R_4_28380001 chr3R_28380001 D20-c5 1401 chr3R 28393678 28393931 chr3R 28393803 28394036 4 115 1.5 1.0 1.2 1.8 358 chr3R 28393678 intergenic not near genes chr3R 28393857 intergenic not near genes chr3R 28394036 intergenic not near genes chr3R_4_28390001 chr3R_28390001 D20-c5 1402 chr3R 28478392 28478445 chr3R 28478498 28478551 12 105 3.0 1.5 2.2 3.8 159 chr3R 28478392 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478551 intergenic not near genes chr3R_12_28475001 chr3R_28475001 D20-c5 1403 chr3R 28480299 28480330 chr3R 28480405 28480436 12 104 1.5 1.5 1.5 4.8 137 chr3R 28480299 intergenic not near genes chr3R 28480368 intergenic not near genes chr3R 28480436 intergenic not near genes chr3R_12_28480001 chr3R_28480001 D20-c5 1404 chr3R 28484354 28484398 chr3R 28486253 28486290 15 1894 28.5 29.0 28.8 0.5 1936 chr3R 28484354 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486290 intergenic CG1894 + chr3R_15_28485001 chr3R_28485001 D20-c5 1405 chr3R 28616450 28616496 chr3R 28616569 28616615 7 116 1.0 3.0 2.0 2.3 165 chr3R 28616450 intron CG10011 - chr3R 28616532 intron CG10011 - chr3R 28616615 intron CG10011 - chr3R_7_28615001 chr3R_28615001 D20-c5 1406 chr3R 28655379 28655398 chr3R 28655506 28655525 5 127 4.5 2.0 3.2 1.2 146 chr3R 28655379 intergenic not near genes chr3R 28655452 intergenic not near genes chr3R 28655525 intergenic not near genes chr3R_5_28655001 chr3R_28655001 D20-c5 1407 chr3R 28671416 28671458 chr3R 28671565 28671607 8 148 4.0 3.0 3.5 1.8 191 chr3R 28671416 exon CG9989 + chr3R 28671512 exon CG9989 + chr3R 28671607 exon CG9989 + chr3R_8_28670001 chr3R_28670001 D20-c5 1408 chr3R 28792857 28792899 chr3R 28797968 28798007 jockey 9 5117 2.5 3.0 2.8 2.4 5150 chr3R 28792857 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28798007 intergenic not near genes chr3R_9_28795001 chr3R_28795001 D20-c5 1409 chr3R 21907534 21907536 chr3R 28831799 28831802 117 6924267 14.5 14.5 14.5 7.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_117_25365001 chr3R_25365001 D20-c5 1410 chr3R 28862129 28862173 chr3R 28862231 28862275 9 100 1.5 1.5 1.5 3.6 146 chr3R 28862129 intron spg + chr3R 28862202 intron spg + chr3R 28862275 intron spg + chr3R_9_28860001 chr3R_28860001 D20-c5 1411 chr3R 28962107 28962153 chr3R 28962587 28962633 5 480 2.0 1.5 1.8 1.8 526 chr3R 28962107 intron CG14521 - chr3R 28962370 intron CG14521 - chr3R 28962633 intron CG14521 - chr3R_5_28960001 chr3R_28960001 D20-c5 1412 chr3R 29032721 29032756 chr3R 29032821 29032855 10 101 3.0 1.5 2.2 3.1 134 chr3R 29032721 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032788 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032855 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_10_29030001 chr3R_29030001 D20-c5 1413 chr3R 29079360 29079406 chr3R 29080757 29080803 NOF 8 1397 3.5 1.5 2.5 2.3 1443 chr3R 29079360 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080803 intron CG11873 + chr3R_8_29080001 chr3R_29080001 D20-c5 1414 chr3R 29091427 29091437 chr3R 29091540 29091547 4 112 1.5 3.5 2.5 1.1 120 chr3R 29091427 intron CG11873 + chr3R 29091487 intron CG11873 + chr3R 29091547 intron CG11873 + chr3R_4_29090001 chr3R_29090001 D20-c5 1415 chr3R 29290066 29290100 chr3R 29290167 29290201 6 99 1.5 0.0 0.8 3.3 135 chr3R 29290066 intergenic not near genes chr3R 29290134 intergenic not near genes chr3R 29290201 intergenic not near genes chr3R_6_29290001 chr3R_29290001 D20-c5 1416 chr3R 29406610 29406644 chr3R 29407921 29407955 jockey 8 1310 3.5 4.0 3.8 1.7 1345 chr3R 29406610 intron Ptp99A + chr3R 29407282 intron Ptp99A + chr3R 29407955 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 D20-c5 1417 chr3R 29446983 29447024 chr3R 29447094 29447136 10 112 1.0 4.5 2.8 2.6 153 chr3R 29446983 intron Ptp99A + chr3R 29447060 intron Ptp99A + chr3R 29447136 intron Ptp99A + chr3R_10_29445001 chr3R_29445001 D20-c5 1418 chr3R 29452600 29452622 chr3R 29452724 29452745 6 122 1.0 1.0 1.0 3.0 145 chr3R 29452600 intron Ptp99A + chr3R 29452672 intron Ptp99A + chr3R 29452745 intron Ptp99A + chr3R_6_29450001 chr3R_29450001 D20-c5 1419 chr3R 29474417 29474462 chr3R 29474529 29474574 6 112 2.0 0.5 1.2 2.7 157 chr3R 29474417 intron Ptp99A + chr3R 29474496 intron Ptp99A + chr3R 29474574 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 D20-c5 1420 chr3R 29505868 29505920 chr3R 29505970 29506022 4 102 0.0 1.0 0.5 2.7 154 chr3R 29505868 intergenic not near genes chr3R 29505945 intergenic not near genes chr3R 29506022 intergenic not near genes chr3R_4_29505001 chr3R_29505001 D20-c5 1421 chr3R 29566359 29566405 chr3R 29566459 29566505 9 100 1.0 1.0 1.0 4.5 146 chr3R 29566359 intergenic not near genes chr3R 29566432 intergenic not near genes chr3R 29566505 intergenic not near genes chr3R_9_29565001 chr3R_29565001 D20-c5 1422 chr3R 29590351 29590399 chr3R 29590468 29590517 11 117 2.5 4.0 3.2 2.6 166 chr3R 29590351 exon CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590517 exon CG31041 - chr3R_11_29590001 chr3R_29590001 D20-c5 1423 chr3R 29669683 29669728 chr3R 29670137 29670175 16 453 2.5 4.0 3.2 3.8 492 chr3R 29669683 exon ppk30 + chr3R 29669929 exon ppk30 + chr3R 29670175 intron ppk30 + chr3R_16_29665001 chr3R_29665001 D20-c5 1424 chr3R 29738249 29738293 chr3R 29739740 29739784 hobo 4 1491 1.5 1.5 1.5 1.6 1535 chr3R 29738249 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739784 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 D20-c5 1425 chr3R 29758919 29758968 chr3R 29759019 29759064 15 102 5.0 4.5 4.8 2.6 145 chr3R 29758919 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759064 intergenic CR44953 - chr3R_15_29755001 chr3R_29755001 D20-c5 1426 chr3R 29854825 29854840 chr3R 29854914 29854944 4 101 4.0 2.5 3.2 1.0 119 chr3R 29854825 3` UTR dgt1 - chr3R 29854884 exon dgt1 - chr3R 29854944 exon dgt1 - chr3R_4_29850001 chr3R_29850001 D20-c5 1427 chr3R 29900126 29900157 chr3R 29900232 29900262 8 104 6.5 2.5 4.5 1.5 136 chr3R 29900126 intron CG31038 + chr3R 29900194 intron CG31038 + chr3R 29900262 intron CG31038 + chr3R_8_29900001 chr3R_29900001 D20-c5 1428 chr3R 29950566 29950594 chr3R 29950652 29950680 4 90 2.0 4.5 3.2 1.0 114 chr3R 29950566 intergenic TkR99D - chr3R 29950623 intergenic TkR99D - chr3R 29950680 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 D20-c5 1429 chr3R 29966036 29966070 chr3R 29966141 29966172 5 102 5.5 2.5 4.0 1.0 136 chr3R 29966036 intron TkR99D - chr3R 29966104 intron TkR99D - chr3R 29966172 intron TkR99D - chr3R_5_29965001 chr3R_29965001 D20-c5 1430 chr3R 30013360 30013398 chr3R 30013482 30013511 6 121 4.0 6.0 5.0 1.0 151 chr3R 30013360 intron CG7920 - chr3R 30013436 intron CG7920 - chr3R 30013511 intron CG7920 - chr3R_6_30010001 chr3R_30010001 D20-c5 1431 chr3R 30029607 30029621 chr3R 30029735 30029749 4 129 2.0 2.5 2.2 1.2 142 chr3R 30029607 intron Axn + chr3R 30029678 intron Axn + chr3R 30029749 intron Axn + chr3R_4_30025001 chr3R_30025001 D20-c5 1432 chr3R 30084850 30084873 chr3R 30086340 30086365 hobo 7 1492 0.0 1.0 0.5 4.7 1515 chr3R 30084850 intron sima + chr3R 30085608 intron sima + chr3R 30086365 intron sima + chr3R_7_30085001 chr3R_30085001 D20-c5 1433 chr3R 30106394 30106413 chr3R 30106527 30106545 5 132 0.0 4.0 2.0 1.7 151 chr3R 30106394 intron sima + chr3R 30106470 intron sima + chr3R 30106545 intron sima + chr3R_5_30105001 chr3R_30105001 D20-c5 1434 chr3R 30124940 30124973 chr3R 30125041 30125074 7 99 1.0 3.5 2.2 2.2 134 chr3R 30124940 intergenic CG45073 - chr3R 30125007 intergenic CG45073 - chr3R 30125074 intergenic CG45073 - chr3R_7_30125001 chr3R_30125001 D20-c5 1435 chr3R 30136927 30136982 chr3R 30137030 30137086 8 103 3.5 2.5 3.0 2.0 159 chr3R 30136927 exon AdoR - chr3R 30137006 intron AdoR - chr3R 30137086 exon AdoR - chr3R_8_30135001 chr3R_30135001 D20-c5 1436 chr3R 30396197 30396231 chr3R 30404488 30404522 roo 6 8291 1.5 2.5 2.0 2.0 8325 chr3R 30396197 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404522 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 D20-c5 1437 chr3R 30456375 30456414 chr3R 30456479 30456519 6 105 0.5 2.0 1.2 2.7 144 chr3R 30456375 intergenic CG2224 - chr3R 30456447 3` UTR CG2224 - chr3R 30456519 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 D20-c5 1438 chr3R 30457992 30458041 chr3R 30458095 30458146 9 105 0.5 2.0 1.2 4.1 154 chr3R 30457992 intron CG2224 - chr3R 30458069 intron CG2224 - chr3R 30458146 intron CG2224 - chr3R_9_30455001 chr3R_30455001 D20-c5 1439 chr3R 30480448 30480502 chr3R 30482941 30482995 jockey 15 2492 3.5 3.0 3.2 3.6 2547 chr3R 30480448 intron PH4alphaEFB + chr3R 30481722 intron PH4alphaEFB + chr3R 30482995 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 D20-c5 1440 chr3R 30571686 30571712 chr3R 30571791 30571817 5 105 0.5 1.5 1.0 2.5 131 chr3R 30571686 intron tmod + chr3R 30571752 intron tmod + chr3R 30571817 exon tmod + chr3R_5_30570001 chr3R_30570001 D20-c5 1441 chr3R 30627583 30627630 chr3R 30627688 30627734 7 103 3.0 4.5 3.8 1.5 151 chr3R 30627583 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627734 exon CG2267 - chr3R_7_30625001 chr3R_30625001 D20-c5 1442 chr3R 30700867 30700879 chr3R 30701015 30701027 4 148 3.0 0.0 1.5 1.6 160 chr3R 30700867 intergenic not near genes chr3R 30700947 intergenic not near genes chr3R 30701027 intergenic not near genes chr3R_4_30700001 chr3R_30700001 D20-c5 1443 chr3R 30755619 30755650 chr3R 30755729 30755760 7 110 3.5 2.5 3.0 1.8 141 chr3R 30755619 intergenic not near genes chr3R 30755690 intergenic not near genes chr3R 30755760 intergenic not near genes chr3R_7_30755001 chr3R_30755001 D20-c5 1444 chr3R 30842820 30842865 chr3R 30842934 30842980 9 114 4.0 3.0 3.5 2.0 160 chr3R 30842820 intergenic not near genes chr3R 30842900 intergenic not near genes chr3R 30842980 intergenic not near genes chr3R_9_30840001 chr3R_30840001 D20-c5 1445 chr3R 30982574 30982624 chr3R 30982691 30982740 13 116 1.0 2.5 1.8 4.6 166 chr3R 30982574 intron 5-HT7 - chr3R 30982657 intron 5-HT7 - chr3R 30982740 intron 5-HT7 - chr3R_13_30980001 chr3R_30980001 D20-c5 1446 chr3R 30996639 30996662 chr3R 30996888 30996911 4 249 3.5 6.5 5.0 0.7 272 chr3R 30996639 intron 5-HT7 - chr3R 30996775 intron 5-HT7 - chr3R 30996911 intron 5-HT7 - chr3R_4_30995001 chr3R_30995001 D20-c5 1447 chr3R 31042091 31042129 chr3R 31042203 31042241 6 112 2.5 0.5 1.5 2.4 150 chr3R 31042091 intron CanA1 + chr3R 31042166 intron CanA1 + chr3R 31042241 intron CanA1 + chr3R_6_31040001 chr3R_31040001 D20-c5 1448 chr3R 31074209 31074255 chr3R 31081832 31081885 springer 7 7622 2.0 0.0 1.0 3.5 7676 chr3R 31074209 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081885 intron Sox100B + chr3R_7_31075001 chr3R_31075001 D20-c5 1449 chr3R 31087077 31087131 chr3R 31087614 31087652 13 535 3.0 4.0 3.5 2.9 575 chr3R 31087077 intergenic not near genes chr3R 31087364 intergenic not near genes chr3R 31087652 intergenic not near genes chr3R_13_31085001 chr3R_31085001 D20-c5 1450 chr3R 31146724 31146772 chr3R 31146827 31146875 8 98 3.0 0.5 1.8 2.9 151 chr3R 31146724 intron Gycbeta100B + chr3R 31146800 intron Gycbeta100B + chr3R 31146875 intron Gycbeta100B + chr3R_8_31145001 chr3R_31145001 D20-c5 1451 chr3R 31188000 31188047 chr3R 31188127 31188174 10 127 3.5 2.0 2.8 2.6 174 chr3R 31188000 intron mesh - chr3R 31188087 intron mesh - chr3R 31188174 intron mesh - chr3R_10_31185001 chr3R_31185001 D20-c5 1452 chr3R 31275947 31275973 chr3R 31276079 31276098 6 124 3.0 2.5 2.8 1.6 151 chr3R 31275947 intergenic not near genes chr3R 31276022 intergenic not near genes chr3R 31276098 intergenic not near genes chr3R_6_31275001 chr3R_31275001 D20-c5 1453 chr3R 31279374 31279405 chr3R 31285590 31285616 diver 8 6215 1.5 3.0 2.2 2.5 6242 chr3R 31279374 intergenic not near genes chr3R 31282495 intergenic not near genes chr3R 31285616 intergenic not near genes chr3R_8_31280001 chr3R_31280001 D20-c5 1454 chr3R 31330395 31330409 chr3R 31335635 31335649 copia 5 5239 4.5 1.0 2.8 1.3 5254 chr3R 31330395 intron CG34347 + chr3R 31333022 intron CG34347 + chr3R 31335649 intron CG34347 + chr3R_5_31330001 chr3R_31330001 D20-c5 1455 chr3R 31412688 31412738 chr3R 31412806 31412856 4 118 1.5 1.0 1.2 1.8 168 chr3R 31412688 intron Gprk2 + chr3R 31412772 intron Gprk2 + chr3R 31412856 intron Gprk2 + chr3R_4_31410001 chr3R_31410001 D20-c5 1456 chr3R 31413077 31413107 chr3R 31418302 31418316 copia 4 5218 2.5 0.0 1.2 1.8 5239 chr3R 31413077 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418316 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 D20-c5 1457 chr3R 31435339 31435391 chr3R 31435516 31435551 13 176 0.5 3.0 1.8 4.6 212 chr3R 31435339 intron Gprk2 + chr3R 31435445 intron Gprk2 + chr3R 31435551 intron Gprk2 + chr3R_13_31435001 chr3R_31435001 D20-c5 1458 chr3R 31453206 31453233 chr3R 31453301 31453336 7 102 3.0 1.5 2.2 2.2 130 chr3R 31453206 intron Gprk2 + chr3R 31453271 intron Gprk2 + chr3R 31453336 exon Gprk2 + chr3R_7_31450001 chr3R_31450001 D20-c5 1459 chr3R 31539324 31539348 chr3R 31539434 31539458 4 110 3.5 2.0 2.8 1.1 134 chr3R 31539324 intergenic not near genes chr3R 31539391 intergenic not near genes chr3R 31539458 intergenic not near genes chr3R_4_31535001 chr3R_31535001 D20-c5 1460 chr3R 31615145 31615182 chr3R 31615340 31615380 4 191 3.0 0.5 1.8 1.4 235 chr3R 31615145 3` UTR Med + chr3R 31615262 3` UTR Med + chr3R 31615380 3` UTR CG11539 - chr3R_4_31615001 chr3R_31615001 D20-c5 1461 chr3R 31630035 31630052 chr3R 31630165 31630182 4 129 4.0 2.0 3.0 1.0 147 chr3R 31630035 intron kek6 + chr3R 31630108 intron kek6 + chr3R 31630182 intron kek6 + chr3R_4_31630001 chr3R_31630001 D20-c5 1462 chr3R 31684438 31684497 chr3R 31684581 31684637 12 142 1.0 1.0 1.0 6.0 199 chr3R 31684438 intergenic not near genes chr3R 31684538 intergenic not near genes chr3R 31684637 intergenic not near genes chr3R_12_31680001 chr3R_31680001 D20-c5 1463 chr3R 31691525 31691550 chr3R 31696313 31696341 Doc 7 4790 2.5 2.5 2.5 2.0 4816 chr3R 31691525 intergenic not near genes chr3R 31693933 intergenic not near genes chr3R 31696341 intergenic not near genes chr3R_7_31690001 chr3R_31690001 D20-c5 1464 chr3R 31699705 31699745 chr3R 31699803 31699852 5 105 3.0 5.5 4.2 1.0 147 chr3R 31699705 intergenic not near genes chr3R 31699778 intergenic not near genes chr3R 31699852 intergenic not near genes chr3R_5_31695001 chr3R_31695001 D20-c5 1465 chr3R 31819194 31819243 chr3R 31819664 31819712 10 471 0.0 1.5 0.8 5.6 518 chr3R 31819194 intron RhoGAP100F + chr3R 31819453 intron RhoGAP100F + chr3R 31819712 intron RhoGAP100F + chr3R_10_31815001 chr3R_31815001 D20-c5 1466 chr3R 31831515 31831570 chr3R 31831619 31831672 8 103 0.0 3.5 1.8 2.9 157 chr3R 31831515 intron RhoGAP100F + chr3R 31831594 intron RhoGAP100F + chr3R 31831672 intron RhoGAP100F + chr3R_8_31830001 chr3R_31830001 D20-c5 1467 chr3R 31925668 31925717 chr3R 31925768 31925817 6 100 2.5 1.5 2.0 2.0 149 chr3R 31925668 intron heph - chr3R 31925742 intron heph - chr3R 31925817 intron heph - chr3R_6_31925001 chr3R_31925001 D20-c5 1468 chr3R 31997973 31998022 chr3R 32005468 32005517 blood 9 7495 1.0 2.0 1.5 3.6 7544 chr3R 31997973 intron heph - chr3R 32001745 intron heph - chr3R 32005517 intron heph - chr3R_9_32000001 chr3R_32000001 D20-c5 1469 chr3R 32034237 32034292 chr3R 32034345 32034392 10 106 1.0 0.5 0.8 5.6 155 chr3R 32034237 intergenic not near genes chr3R 32034314 intergenic not near genes chr3R 32034392 intergenic not near genes chr3R_10_32030001 chr3R_32030001 D20-c5 1470 chr3R 32061693 32061734 chr3R 32062012 32062053 7 319 10.5 8.5 9.5 0.7 360 chr3R 32061693 intron Map205 - chr3R 32061873 intron Map205 - chr3R 32062053 intron Map205 - chr3R_7_32060001 chr3R_32060001 D20-c5 1471 chr4 319969 319988 chr4 328170 328189 Stalker2 4 8200 1.0 0.5 0.8 2.2 8220 chr4 319969 3` UTR CG32850 + chr4 324079 intron CG32850 + chr4 328189 3` UTR CG32850 + chr4_4_320001 chr4_320001 D20-c5 1472 chr4 671589 671629 chr4 680197 680237 Tirant 9 8608 3.0 3.5 3.2 2.1 8648 chr4 671589 intron CG11360 + chr4 675913 intron CG11360 + chr4 680237 intron CG11360 + chr4_9_675001 chr4_675001 D20-c5 1473 chr4 959605 959652 chr4 959809 959856 4 204 1.0 3.5 2.2 1.2 251 chr4 959605 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959856 5` UTR CR44030 + chr4_4_955001 chr4_955001 D20-c5 1474 chr4 972481 972527 chr4 972579 972634 6 106 0.0 0.0 0.0 6.0 153 chr4 972481 intron fuss - chr4 972558 intron fuss - chr4 972634 intron fuss - chr4_6_970001 chr4_970001 D20-c5 1475 chrX 906686 906722 chrX 908500 908536 S-element 7 1814 1.5 3.0 2.2 2.2 1850 chrX 906686 intron CG43867 - chrX 907611 intron CG43867 - chrX 908536 intron CG43867 - chrX_7_905001 chrX_905001 D20-c5 1476 chrX 1482401 1482460 chrX 1482671 1482730 23 266 14.5 9.0 11.8 1.8 329 chrX 1482401 exon sta - chrX 1482566 intron,3` UTR,3` UTR sta -,snoRNA:M -,snoRNA:Me28S-G980 - chrX 1482730 exon sta - chrX_23_1480001 chrX_1480001 D20-c5 1477 chrX 1482838 1482845 chrX 1483257 1483265 4 420 16.5 11.5 14.0 0.3 427 chrX 1482838 exon sta - chrX 1483052 intron sta - chrX 1483265 5` UTR sta - chrX_4_1480001 chrX_1480001 D20-c5 1478 chrX 2399833 2399845 chrX 2408211 2408223 roo 5 8378 4.5 5.5 5.0 0.8 8390 chrX 2399833 intergenic not near genes chrX 2404028 intergenic not near genes chrX 2408223 intergenic not near genes chrX_5_2400001 chrX_2400001 D20-c5 1479 chrX 2578805 2578841 chrX 2578922 2578958 4 113 3.0 3.0 3.0 1.0 153 chrX 2578805 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578958 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 D20-c5 1480 chrX 2888104 2888146 chrX 2888191 2888249 5 99 2.0 2.5 2.2 1.6 145 chrX 2888104 intron kirre + chrX 2888176 intron kirre + chrX 2888249 intron kirre + chrX_5_2885001 chrX_2885001 D20-c5 1481 chrX 3328286 3328295 chrX 3328889 3328898 4 603 0.0 4.0 2.0 1.3 612 chrX 3328286 intron,intron dnc +,CR44886 - chrX 3328592 intron,intron dnc +,CR44886 - chrX 3328898 intron,intron dnc +,CR44886 - chrX_4_3325001 chrX_3325001 D20-c5 1482 chrX 3351795 3351813 chrX 3351893 3351924 5 104 1.0 2.5 1.8 1.8 129 chrX 3351795 intergenic not near genes chrX 3351860 intergenic not near genes chrX 3351924 intergenic not near genes chrX_5_3350001 chrX_3350001 D20-c5 1483 chrX 3459963 3460009 chrX 3460064 3460111 4 102 1.5 0.0 0.8 2.2 148 chrX 3459963 intron,intron CR44999 +,CG16782 - chrX 3460037 intron,5` UTR CR44999 +,CG16782 - chrX 3460111 intron,5` UTR CR44999 +,CG16782 - chrX_4_3460001 chrX_3460001 D20-c5 1484 chrX 3481725 3481770 chrX 3481823 3481871 6 99 0.5 0.5 0.5 4.0 146 chrX 3481725 intron,intron CR44999 +,CG10804 - chrX 3481798 intron,intron CR44999 +,CG10804 - chrX 3481871 intron,intron CR44999 +,CG10804 - chrX_6_3480001 chrX_3480001 D20-c5 1485 chrX 3493071 3493114 chrX 3502255 3502298 roo 6 9184 2.0 1.5 1.8 2.1 9227 chrX 3493071 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502298 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 D20-c5 1486 chrX 3657394 3657439 chrX 3657498 3657544 4 104 0.5 0.5 0.5 2.7 150 chrX 3657394 intron AstA-R1 + chrX 3657469 intron AstA-R1 + chrX 3657544 intron AstA-R1 + chrX_4_3655001 chrX_3655001 D20-c5 1487 chrX 3662464 3662474 chrX 3662564 3662583 4 106 1.5 0.0 0.8 2.2 119 chrX 3662464 intron AstA-R1 + chrX 3662524 intron AstA-R1 + chrX 3662583 intron AstA-R1 + chrX_4_3660001 chrX_3660001 D20-c5 1488 chrX 3726751 3726777 chrX 3730173 3730199 NOF 5 3422 0.0 0.0 0.0 5.0 3448 chrX 3726751 intron tlk + chrX 3728475 intron tlk + chrX 3730199 intron tlk + chrX_5_3725001 chrX_3725001 D20-c5 1489 chrX 3862806 3862839 chrX 3862918 3862951 4 112 1.0 1.5 1.2 1.8 145 chrX 3862806 intergenic yin - chrX 3862878 intergenic yin - chrX 3862951 intergenic yin - chrX_4_3860001 chrX_3860001 D20-c5 1490 chrX 3881271 3881305 chrX 3881432 3881469 5 163 2.0 3.0 2.5 1.4 198 chrX 3881271 intron VhaAC39-1 + chrX 3881370 intron VhaAC39-1 + chrX 3881469 exon VhaAC39-1 + chrX_5_3880001 chrX_3880001 D20-c5 1491 chrX 3999280 3999315 chrX 3999380 3999420 5 102 2.0 3.5 2.8 1.3 140 chrX 3999280 intergenic not near genes chrX 3999350 intergenic not near genes chrX 3999420 intergenic not near genes chrX_5_3995001 chrX_3995001 D20-c5 1492 chrX 4039054 4039074 chrX 4039156 4039167 5 100 3.5 4.0 3.8 1.0 113 chrX 4039054 intergenic not near genes chrX 4039110 intergenic not near genes chrX 4039167 intergenic not near genes chrX_5_4035001 chrX_4035001 D20-c5 1493 chrX 4101858 4101897 chrX 4101962 4102000 5 102 1.0 0.5 0.8 2.8 142 chrX 4101858 exon CG15375 + chrX 4101929 exon CG15375 + chrX 4102000 exon CG15375 + chrX_5_4100001 chrX_4100001 D20-c5 1494 chrX 4157872 4157915 chrX 4164950 4164992 297 5 7077 2.5 1.5 2.0 1.7 7120 chrX 4157872 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164992 intron Fas2 - chrX_5_4160001 chrX_4160001 D20-c5 1495 chrX 4185682 4185721 chrX 4185789 4185831 7 106 0.0 0.5 0.2 5.8 149 chrX 4185682 intron Fas2 - chrX 4185756 intron Fas2 - chrX 4185831 intron Fas2 - chrX_7_4185001 chrX_4185001 D20-c5 1496 chrX 4216320 4216331 chrX 4216423 4216435 4 104 2.5 2.0 2.2 1.2 115 chrX 4216320 intergenic not near genes chrX 4216378 intergenic CG15571 - chrX 4216435 intergenic CG15571 - chrX_4_4215001 chrX_4215001 D20-c5 1497 chrX 4262739 4262786 chrX 4262863 4262910 8 123 3.5 2.0 2.8 2.1 171 chrX 4262739 intergenic not near genes chrX 4262824 intergenic not near genes chrX 4262910 intergenic not near genes chrX_8_4260001 chrX_4260001 D20-c5 1498 chrX 4396966 4396980 chrX 4397075 4397089 4 109 0.5 1.0 0.8 2.2 123 chrX 4396966 intron CR32773 - chrX 4397028 intron CR32773 - chrX 4397089 intron CR32773 - chrX_4_4395001 chrX_4395001 D20-c5 1499 chrX 4961819 4961870 chrX 4962046 4962097 5 227 1.0 4.5 2.8 1.3 278 chrX 4961819 intron CR44833 - chrX 4961958 intron CR44833 - chrX 4962097 intron CR44833 - chrX_5_4960001 chrX_4960001 D20-c5 1500 chrX 5291489 5291501 chrX 5291597 5291609 5 107 3.0 2.5 2.8 1.3 120 chrX 5291489 intergenic not near genes chrX 5291549 intergenic not near genes chrX 5291609 intergenic not near genes chrX_5_5290001 chrX_5290001 D20-c5 1501 chrX 5338686 5338732 chrX 5339963 5340010 jockey 6 1278 1.0 4.0 2.5 1.7 1324 chrX 5338686 intergenic not near genes chrX 5339348 intergenic not near genes chrX 5340010 intergenic SK + chrX_6_5335001 chrX_5335001 D20-c5 1502 chrX 5350308 5350315 chrX 5350411 5350417 4 103 5.0 4.0 4.5 0.7 109 chrX 5350308 intron SK + chrX 5350362 intron SK + chrX 5350417 intron SK + chrX_4_5350001 chrX_5350001 D20-c5 1503 chrX 6425002 6425040 chrX 6425534 6425572 5 532 8.0 6.0 7.0 0.6 570 chrX 6425002 intron CG42340 - chrX 6425287 intron CG42340 - chrX 6425572 intron CG42340 - chrX_5_6425001 chrX_6425001 D20-c5 1504 chrX 6562798 6562845 chrX 6571305 6571352 Tirant 13 8507 0.5 2.5 1.5 5.2 8554 chrX 6562798 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571352 intron CG34417 + chrX_13_6565001 chrX_6565001 D20-c5 1505 chrX 6897580 6897704 chrX 6897683 6897839 7 126 0.0 0.0 0.0 7.0 259 chrX 6897580 intergenic not near genes chrX 6897710 intergenic not near genes chrX 6897839 intergenic not near genes chrX_7_6895001 chrX_6895001 D20-c5 1506 chrX 6989485 6989523 chrX 6989597 6989635 6 112 0.5 0.5 0.5 4.0 150 chrX 6989485 intron ogre - chrX 6989560 intron ogre - chrX 6989635 intron ogre - chrX_6_6985001 chrX_6985001 D20-c5 1507 chrX 7294496 7294534 chrX 7294616 7294657 6 122 2.0 1.5 1.8 2.1 161 chrX 7294496 intron,intron CR44357 -,CG1677 - chrX 7294576 intron,intron CR44357 -,CG1677 - chrX 7294657 intron,intron CR44357 -,CG1677 - chrX_6_7290001 chrX_7290001 D20-c5 1508 chrX 7470205 7470224 chrX 7470318 7470337 6 112 0.0 0.5 0.2 5.0 132 chrX 7470205 intergenic not near genes chrX 7470271 intergenic not near genes chrX 7470337 intergenic not near genes chrX_6_7470001 chrX_7470001 D20-c5 1509 chrX 8031406 8031449 chrX 8035740 8035783 Juan 4 4334 2.5 0.5 1.5 1.6 4377 chrX 8031406 intergenic not near genes chrX 8033594 intergenic not near genes chrX 8035783 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 D20-c5 1510 chrX 8803237 8803265 chrX 8803609 8803637 4 377 0.0 0.5 0.2 3.3 400 chrX 8803237 intron Lim1 - chrX 8803437 intron Lim1 - chrX 8803637 intron Lim1 - chrX_4_8800001 chrX_8800001 D20-c5 1511 chrX 8922309 8922360 chrX 8922768 8922819 jockey 4 459 1.0 1.0 1.0 2.0 510 chrX 8922309 intron rdgA + chrX 8922564 intron rdgA + chrX 8922819 intron rdgA + chrX_4_8920001 chrX_8920001 D20-c5 1512 chrX 9337958 9337970 chrX 9338074 9338087 4 117 2.0 1.5 1.8 1.4 129 chrX 9337958 intron CG34449 - chrX 9338022 intron CG34449 - chrX 9338087 exon CG34449 - chrX_4_9335001 chrX_9335001 D20-c5 1513 chrX 9508115 9508158 chrX 9509658 9509701 jockey 7 1543 0.5 3.5 2.0 2.3 1586 chrX 9508115 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509701 intron CG32700 - chrX_7_9505001 chrX_9505001 D20-c5 1514 chrX 9575784 9575814 chrX 9576132 9576163 mdg3 5 348 1.0 2.5 1.8 1.8 379 chrX 9575784 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576163 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 D20-c5 1515 chrX 9791865 9791895 chrX 9791987 9792017 6 121 0.0 3.0 1.5 2.4 152 chrX 9791865 intron CG32698 + chrX 9791941 intron CG32698 + chrX 9792017 intron CG32698 + chrX_6_9790001 chrX_9790001 D20-c5 1516 chrX 9842442 9842478 chrX 9843049 9843088 11 608 15.0 15.5 15.2 0.7 646 chrX 9842442 intron CG32698 + chrX 9842765 intron CG32698 + chrX 9843088 intron CG32698 + chrX_11_9840001 chrX_9840001 D20-c5 1517 chrX 9923365 9923421 chrX 9923481 9923537 11 116 1.5 1.5 1.5 4.4 172 chrX 9923365 intergenic not near genes chrX 9923451 intergenic not near genes chrX 9923537 intergenic not near genes chrX_11_9920001 chrX_9920001 D20-c5 1518 chrX 10138224 10138232 chrX 10145753 10145761 412 5 7529 3.0 2.0 2.5 1.4 7537 chrX 10138224 intron,intron RhoU +,CR44894 - chrX 10141992 intron,intron RhoU +,CR44894 - chrX 10145761 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 D20-c5 1519 chrX 10151899 10151933 chrX 10152001 10152035 4 102 2.5 0.0 1.2 1.8 136 chrX 10151899 intron CR44894 - chrX 10151967 intron CR44894 - chrX 10152035 intron CR44894 - chrX_4_10150001 chrX_10150001 D20-c5 1520 chrX 10686035 10686065 chrX 10691197 10691227 roo 5 5162 0.0 1.0 0.5 3.3 5192 chrX 10686035 intron X11Lbeta + chrX 10688631 intron X11Lbeta + chrX 10691227 intron X11Lbeta + chrX_5_10685001 chrX_10685001 D20-c5 1521 chrX 10694135 10694163 chrX 10694240 10694267 4 104 2.0 1.5 1.8 1.4 132 chrX 10694135 intron X11Lbeta + chrX 10694201 intron X11Lbeta + chrX 10694267 intron X11Lbeta + chrX_4_10690001 chrX_10690001 D20-c5 1522 chrX 10772660 10772698 chrX 10772768 10772806 Tirant 8 107 1.0 2.0 1.5 3.2 146 chrX 10772660 intron CG15211 + chrX 10772733 intron CG15211 + chrX 10772806 intron CG15211 + chrX_8_10770001 chrX_10770001 D20-c5 1523 chrX 10917906 10917916 chrX 10918013 10918015 4 105 7.0 4.0 5.5 0.6 109 chrX 10917906 exon CG43901 + chrX 10917960 exon CG43901 + chrX 10918015 exon CG43901 + chrX_4_10915001 chrX_10915001 D20-c5 1524 chrX 10960213 10960235 chrX 10960352 10960374 4 138 1.0 0.5 0.8 2.2 161 chrX 10960213 intron Myo10A + chrX 10960294 intron Myo10A + chrX 10960374 intron Myo10A + chrX_4_10960001 chrX_10960001 D20-c5 1525 chrX 11268546 11268593 chrX 11270064 11270105 hopper2 9 1517 0.0 2.0 1.0 4.5 1559 chrX 11268546 intron CG44422 - chrX 11269326 intron CG44422 - chrX 11270105 intron CG44422 - chrX_9_11265001 chrX_11265001 D20-c5 1526 chrX 11297704 11297725 chrX 11297825 11297849 5 123 3.5 2.0 2.8 1.3 145 chrX 11297704 intron CG44422 - chrX 11297776 intron CG44422 - chrX 11297849 exon CG44422 - chrX_5_11295001 chrX_11295001 D20-c5 1527 chrX 11312054 11312082 chrX 11319422 11319460 Stalker2 6 7376 1.5 0.5 1.0 3.0 7406 chrX 11312054 intergenic not near genes chrX 11315757 intergenic not near genes chrX 11319460 intergenic not near genes chrX_6_11315001 chrX_11315001 D20-c5 1528 chrX 12184262 12184272 chrX 12184372 12184381 4 110 3.0 6.0 4.5 0.7 119 chrX 12184262 intron Ten-a + chrX 12184322 intron Ten-a + chrX 12184381 intron Ten-a + chrX_4_12180001 chrX_12180001 D20-c5 1529 chrX 12430930 12430962 chrX 12431033 12431055 5 99 1.5 0.5 1.0 2.5 125 chrX 12430930 intergenic not near genes chrX 12430992 intergenic not near genes chrX 12431055 intergenic not near genes chrX_5_12430001 chrX_12430001 D20-c5 1530 chrX 12752275 12752300 chrX 12752387 12752410 4 111 2.5 1.0 1.8 1.4 135 chrX 12752275 5` UTR CR44619 + chrX 12752342 5` UTR CR44619 + chrX 12752410 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 D20-c5 1531 chrX 12971669 12971686 chrX 12971771 12971776 5 100 3.0 3.5 3.2 1.2 107 chrX 12971669 intron,exon CR43636 -,CG15721 + chrX 12971722 intron,exon CR43636 -,CG15721 + chrX 12971776 intron,exon CR43636 -,CG15721 + chrX_5_12970001 chrX_12970001 D20-c5 1532 chrX 13340849 13340887 chrX 13340959 13340997 4 110 1.5 1.0 1.2 1.8 148 chrX 13340849 3` UTR CG15747 + chrX 13340923 3` UTR CG15747 + chrX 13340997 3` UTR CG15747 + chrX_4_13340001 chrX_13340001 D20-c5 1533 chrX 13429461 13429477 chrX 13430634 13430651 jockey 4 1173 1.5 2.5 2.0 1.3 1190 chrX 13429461 intergenic not near genes chrX 13430056 intergenic not near genes chrX 13430651 intergenic not near genes chrX_4_13430001 chrX_13430001 D20-c5 1534 chrX 13443389 13443416 chrX 13443492 13443517 6 102 3.5 5.5 4.5 1.1 128 chrX 13443389 intergenic not near genes chrX 13443453 intergenic not near genes chrX 13443517 intergenic not near genes chrX_6_13440001 chrX_13440001 D20-c5 1535 chrX 13577744 13577775 chrX 13578004 13578036 4 260 1.0 1.0 1.0 2.0 292 chrX 13577744 intron Tango13 + chrX 13577890 intron Tango13 + chrX 13578036 intron Tango13 + chrX_4_13575001 chrX_13575001 D20-c5 1536 chrX 13678773 13678807 chrX 13680018 13680052 4 1245 1.0 4.0 2.5 1.1 1279 chrX 13678773 intron CG12177 - chrX 13679412 intron CG12177 - chrX 13680052 exon CG12177 - chrX_4_13675001 chrX_13675001 D20-c5 1537 chrX 13734070 13734103 chrX 13734191 13734221 9 119 2.5 3.5 3.0 2.2 151 chrX 13734070 intron g - chrX 13734146 intron g - chrX 13734221 intron g - chrX_9_13730001 chrX_13730001 D20-c5 1538 chrX 13739085 13739120 chrX 13739186 13739221 4 100 0.5 0.5 0.5 2.7 136 chrX 13739085 intron,3` UTR Grip91 -,CG11134 + chrX 13739153 intron,3` UTR Grip91 -,CG11134 + chrX 13739221 intron Grip91 - chrX_4_13735001 chrX_13735001 D20-c5 1539 chrX 14105037 14105052 chrX 14114213 14114228 roo 4 9175 1.5 4.0 2.8 1.1 9191 chrX 14105037 intergenic not near genes chrX 14109632 intergenic not near genes chrX 14114228 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 D20-c5 1540 chrX 14131479 14131510 chrX 14131583 14131607 7 101 1.0 2.0 1.5 2.8 128 chrX 14131479 intergenic not near genes chrX 14131543 intergenic not near genes chrX 14131607 intergenic not near genes chrX_7_14130001 chrX_14130001 D20-c5 1541 chrX 14296438 14296489 chrX 14296539 14296590 6 100 0.0 0.0 0.0 6.0 152 chrX 14296438 intergenic not near genes chrX 14296514 intergenic not near genes chrX 14296590 intergenic not near genes chrX_6_14295001 chrX_14295001 D20-c5 1542 chrX 14366518 14366543 chrX 14366623 14366648 5 105 0.5 0.5 0.5 3.3 130 chrX 14366518 intron dpr8 + chrX 14366583 intron dpr8 + chrX 14366648 intron dpr8 + chrX_5_14365001 chrX_14365001 D20-c5 1543 chrX 14484974 14484995 chrX 14485088 14485106 4 113 0.0 0.5 0.2 3.3 132 chrX 14484974 intergenic not near genes chrX 14485040 intergenic not near genes chrX 14485106 intergenic not near genes chrX_4_14485001 chrX_14485001 D20-c5 1544 chrX 14636446 14636485 chrX 14641912 14641951 I-element 6 5465 0.0 2.5 1.2 2.7 5505 chrX 14636446 intron NetA - chrX 14639198 intron NetA - chrX 14641951 intron NetA - chrX_6_14635001 chrX_14635001 D20-c5 1545 chrX 14936843 14936862 chrX 14946125 14946142 roo 5 9282 1.0 1.0 1.0 2.5 9299 chrX 14936843 intron pdgy - chrX 14941492 intron pdgy - chrX 14946142 intron pdgy - chrX_5_14940001 chrX_14940001 D20-c5 1546 chrX 15365773 15365819 chrX 15365879 15365881 10 97 1.5 0.0 0.8 5.6 108 chrX 15365773 intron acj6 - chrX 15365827 intron acj6 - chrX 15365881 intron acj6 - chrX_10_15365001 chrX_15365001 D20-c5 1547 chrX 15369806 15369847 chrX 15369914 15369955 4 108 0.5 2.0 1.2 1.8 149 chrX 15369806 intron acj6 - chrX 15369880 intron acj6 - chrX 15369955 intron acj6 - chrX_4_15365001 chrX_15365001 D20-c5 1548 chrX 15413035 15413061 chrX 15417362 15417388 Juan 7 4327 3.0 2.0 2.5 2.0 4353 chrX 15413035 intron Cngl - chrX 15415212 intron Cngl - chrX 15417388 intron Cngl - chrX_7_15415001 chrX_15415001 D20-c5 1549 chrX 15435687 15435701 chrX 15436145 15436159 rover 4 458 0.5 3.0 1.8 1.4 472 chrX 15435687 intron Cngl - chrX 15435923 intron Cngl - chrX 15436159 intron Cngl - chrX_4_15435001 chrX_15435001 D20-c5 1550 chrX 15543247 15543286 chrX 15543353 15543385 8 105 3.5 1.0 2.2 2.5 138 chrX 15543247 intron Ac13E - chrX 15543316 intron Ac13E - chrX 15543385 intron Ac13E - chrX_8_15540001 chrX_15540001 D20-c5 1551 chrX 16273805 16273831 chrX 16276704 16276731 4 2899 5.5 11.5 8.5 0.4 2926 chrX 16273805 intron,3` UTR kat80 -,Mfe2 + chrX 16275268 intron kat80 - chrX 16276731 exon Prosalpha4 + chrX_4_16275001 chrX_16275001 D20-c5 1552 chrX 16492624 16492667 chrX 16498226 16498268 mdg3 6 5600 1.0 1.5 1.2 2.7 5644 chrX 16492624 intron para - chrX 16495446 intron para - chrX 16498268 intron para - chrX_6_16495001 chrX_16495001 D20-c5 1553 chrX 16519923 16519959 chrX 16520033 16520070 4 110 0.5 1.0 0.8 2.2 147 chrX 16519923 intron para - chrX 16519996 intron para - chrX 16520070 intron para - chrX_4_16515001 chrX_16515001 D20-c5 1554 chrX 16724506 16724562 chrX 16724738 16724789 6 231 0.5 0.5 0.5 4.0 283 chrX 16724506 intron CG32572 + chrX 16724648 intron CG32572 + chrX 16724789 intron CG32572 + chrX_6_16720001 chrX_16720001 D20-c5 1555 chrX 16821214 16821264 chrX 16821319 16821369 4 105 1.0 0.5 0.8 2.2 155 chrX 16821214 intron CG4829 + chrX 16821292 intron CG4829 + chrX 16821369 intron CG4829 + chrX_4_16820001 chrX_16820001 D20-c5 1556 chrX 17063155 17063180 chrX 17063267 17063291 5 111 2.5 0.0 1.2 2.3 136 chrX 17063155 intron CG45002 - chrX 17063223 intron CG45002 - chrX 17063291 intron CG45002 - chrX_5_17060001 chrX_17060001 D20-c5 1557 chrX 17282856 17282875 chrX 17282959 17282977 4 102 2.0 0.0 1.0 2.0 121 chrX 17282856 intron CG5445 + chrX 17282916 5` UTR CG5445 + chrX 17282977 intron CG5445 + chrX_4_17280001 chrX_17280001 D20-c5 1558 chrX 17716564 17716587 chrX 17716675 17716698 4 112 3.0 2.5 2.8 1.1 134 chrX 17716564 intron CG42684 + chrX 17716631 intron CG42684 + chrX 17716698 intron CG42684 + chrX_4_17715001 chrX_17715001 D20-c5 1559 chrX 17771280 17771322 chrX 17771386 17771426 4 104 1.5 0.5 1.0 2.0 146 chrX 17771280 intron unc-4 + chrX 17771353 intron unc-4 + chrX 17771426 intron unc-4 + chrX_4_17770001 chrX_17770001 D20-c5 1560 chrX 17792937 17792970 chrX 17796260 17796293 flea 6 3323 1.0 2.5 1.8 2.1 3356 chrX 17792937 intron OdsH + chrX 17794615 intron OdsH + chrX 17796293 intron OdsH + chrX_6_17790001 chrX_17790001 D20-c5 1561 chrX 17879633 17879680 chrX 17879764 17879811 7 131 0.5 1.5 1.0 3.5 178 chrX 17879633 intron mnb - chrX 17879722 intron mnb - chrX 17879811 intron mnb - chrX_7_17875001 chrX_17875001 D20-c5 1562 chrX 18486114 18486140 chrX 18486223 18486254 7 113 3.0 1.5 2.2 2.2 140 chrX 18486114 exon psh - chrX 18486184 intron psh - chrX 18486254 intron psh - chrX_7_18485001 chrX_18485001 D20-c5 1563 chrX 18490051 18490102 chrX 18490198 18490249 8 147 0.5 2.5 1.5 3.2 198 chrX 18490051 intergenic CG15046 - chrX 18490150 intergenic not near genes chrX 18490249 intergenic not near genes chrX_8_18490001 chrX_18490001 D20-c5 1564 chrX 18574808 18574825 chrX 18574913 18574930 6 105 0.5 2.5 1.5 2.4 122 chrX 18574808 intergenic not near genes chrX 18574869 intergenic not near genes chrX 18574930 intergenic not near genes chrX_6_18570001 chrX_18570001 D20-c5 1565 chrX 18595477 18595517 chrX 18595585 18595618 4 106 0.5 4.0 2.2 1.2 141 chrX 18595477 intergenic not near genes chrX 18595548 intergenic not near genes chrX 18595618 intergenic not near genes chrX_4_18595001 chrX_18595001 D20-c5 1566 chrX 18662415 18662442 chrX 18662534 18662562 5 118 2.0 2.5 2.2 1.6 147 chrX 18662415 intergenic CG6696 - chrX 18662488 intergenic CG6696 - chrX 18662562 intergenic CG6696 - chrX_5_18660001 chrX_18660001 D20-c5 1567 chrX 18947482 18947527 chrX 18947595 18947645 4 116 0.0 2.0 1.0 2.0 163 chrX 18947482 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947645 intron CG43759 + chrX_4_18945001 chrX_18945001 D20-c5 1568 chrX 19080309 19080349 chrX 19080438 19080479 7 130 1.0 1.0 1.0 3.5 170 chrX 19080309 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080479 intergenic not near genes chrX_7_19080001 chrX_19080001 D20-c5 1569 chrX 19109125 19109138 chrX 19109333 19109347 4 207 0.0 3.0 1.5 1.6 222 chrX 19109125 intergenic not near genes chrX 19109236 intergenic not near genes chrX 19109347 intergenic not near genes chrX_4_19105001 chrX_19105001 D20-c5 1570 chrX 19119718 19119859 chrX 19119829 19119955 4 104 0.0 0.0 0.0 4.0 237 chrX 19119718 intergenic not near genes chrX 19119836 intergenic not near genes chrX 19119955 intergenic not near genes chrX_4_19115001 chrX_19115001 D20-c5 1571 chrX 19125673 19125718 chrX 19125826 19125865 5 152 2.0 1.5 1.8 1.8 192 chrX 19125673 intron tgy - chrX 19125769 intron tgy - chrX 19125865 intron tgy - chrX_5_19125001 chrX_19125001 D20-c5 1572 chrX 19461124 19461167 chrX 19461244 19461288 5 121 0.5 2.5 1.5 2.0 164 chrX 19461124 intron kek5 + chrX 19461206 intron kek5 + chrX 19461288 intron kek5 + chrX_5_19460001 chrX_19460001 D20-c5 1573 chrX 19472104 19472133 chrX 19472699 19472712 jockey 5 589 1.5 1.5 1.5 2.0 608 chrX 19472104 intergenic kek5 + chrX 19472408 intergenic kek5 + chrX 19472712 intergenic not near genes chrX_5_19470001 chrX_19470001 D20-c5 1574 chrX 19710053 19710091 chrX 19711864 19711902 S-element 10 1811 3.0 2.5 2.8 2.6 1849 chrX 19710053 intron meso18E - chrX 19710978 intron meso18E - chrX 19711902 intron meso18E - chrX_10_19710001 chrX_19710001 D20-c5 1575 chrX 19744631 19744658 chrX 19744781 19744807 7 149 13.0 14.5 13.8 0.5 176 chrX 19744631 5` UTR,exon CG33932 +,Rpp20 + chrX 19744719 intron,intron CG33932 +,Rpp20 + chrX 19744807 5` UTR,exon CG33932 +,Rpp20 + chrX_7_19740001 chrX_19740001 D20-c5 1576 chrX 20052763 20052807 chrX 20052870 20052916 6 108 1.5 2.0 1.8 2.1 153 chrX 20052763 intron Dop2R - chrX 20052840 intron Dop2R - chrX 20052916 intron Dop2R - chrX_6_20050001 chrX_20050001 D20-c5 1577 chrX 20132280 20132291 chrX 20132387 20132399 4 108 3.5 1.0 2.2 1.2 119 chrX 20132280 intergenic not near genes chrX 20132340 intergenic not near genes chrX 20132399 intergenic not near genes chrX_4_20130001 chrX_20130001 D20-c5 1578 chrX 20369319 20369342 chrX 20369426 20369441 7 107 1.5 1.5 1.5 2.8 122 chrX 20369319 intergenic not near genes chrX 20369380 intergenic not near genes chrX 20369441 intergenic not near genes chrX_7_20365001 chrX_20365001 D20-c5 1579 chrX 20432150 20432196 chrX 20432251 20432252 8 93 4.5 0.5 2.5 2.3 102 chrX 20432150 exon mal + chrX 20432201 exon mal + chrX 20432252 exon mal + chrX_8_20430001 chrX_20430001 D20-c5 1580 chrX 20572770 20572793 chrX 20573094 20573117 4 324 1.5 2.5 2.0 1.3 347 chrX 20572770 intergenic not near genes chrX 20572944 intergenic not near genes chrX 20573117 intergenic not near genes chrX_4_20570001 chrX_20570001 D20-c5 1581 chrX 20940714 20940737 chrX 20942207 20942230 hobo 4 1494 1.5 2.5 2.0 1.3 1516 chrX 20940714 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942230 intergenic not near genes chrX_4_20940001 chrX_20940001 D20-c5 1582 chrX 21076338 21076357 chrX 21076442 21076461 4 103 1.0 1.0 1.0 2.0 123 chrX 21076338 intron bves + chrX 21076400 intron bves + chrX 21076461 intron bves + chrX_4_21075001 chrX_21075001 D20-c5 1583 chrX 21197050 21197077 chrX 21197153 21197180 6 103 1.0 1.0 1.0 3.0 130 chrX 21197050 intergenic not near genes chrX 21197115 intergenic not near genes chrX 21197180 intergenic not near genes chrX_6_21195001 chrX_21195001 D20-c5 1584 chrX 21255474 21255504 chrX 21255624 21255631 4 145 0.5 0.0 0.2 3.3 157 chrX 21255474 intron CG32521 - chrX 21255552 intron CG32521 - chrX 21255631 intron CG32521 - chrX_4_21255001 chrX_21255001 D20-c5 1585 chrX 21474381 21474420 chrX 21474768 21474811 1731 6 390 0.5 0.5 0.5 4.0 430 chrX 21474381 intergenic not near genes chrX 21474596 intergenic not near genes chrX 21474811 intergenic not near genes chrX_6_21470001 chrX_21470001 D20-c5 1586 chrX 21507301 21507353 chrX 21507416 21507468 6 115 1.5 2.5 2.0 2.0 167 chrX 21507301 intron CR45082 - chrX 21507384 intron CR45082 - chrX 21507468 intron CR45082 - chrX_6_21505001 chrX_21505001 D20-c5 1587 chrX 22596925 22596964 chrX 22597331 22597370 5 406 1.0 2.0 1.5 2.0 445 chrX 22596925 intron Cda4 - chrX 22597148 intron Cda4 - chrX 22597370 intron Cda4 - chrX_5_22595001 chrX_22595001 D20-c5 1588 chrX 22771484 22771516 chrX 22774800 22774818 297 5 3313 1.5 1.0 1.2 2.3 3334 chrX 22771484 intron CR44997 + chrX 22773151 intron CR44997 + chrX 22774818 intron CR44997 + chrX_5_22770001 chrX_22770001 D20-c5 1589 chrX 22824221 22824437 chrX 22824372 22824594 4 156 0.5 0.5 0.5 2.7 373 chrX 22824221 intergenic fog - chrX 22824408 3` UTR fog - chrX 22824594 3` UTR fog - chrX_4_22820001 chrX_22820001 D20-c5 1590 chrX 22895708 22895752 chrX 22895851 22895895 6 143 1.0 2.5 1.8 2.1 187 chrX 22895708 intergenic not near genes chrX 22895802 intergenic not near genes chrX 22895895 intergenic not near genes chrX_6_22895001 chrX_22895001 D20-c5 1591 chrX 22987085 22987106 chrX 22989769 22989790 Burdock 4 2684 0.5 1.5 1.0 2.0 2705 chrX 22987085 intron,intron stnA -,stnB - chrX 22988438 intron,intron stnA -,stnB - chrX 22989790 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 D20-c5