SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47460	47486	chr2L	52566	52592	jockey	18	5105	10.0	5.0	7.5	2.1	5132	chr2L	47460	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52592	intron	Cda5 -	chr2L_18_50001	chr2L_50001	D20-c2
9	chr2L	347884	347913	chr2L	355385	355412	blood	14	7501	3.5	2.5	3.0	3.5	7528	chr2L	347884	3` UTR	Plc21C +	chr2L	351648	intron	Plc21C +	chr2L	355412	3` UTR	Plc21C +	chr2L_14_350001	chr2L_350001	D20-c2
17	chr2L	686917	686949	chr2L	695958	695990	roo	14	9041	4.5	5.5	5.0	2.3	9073	chr2L	686917	intron	ds -	chr2L	691454	intron	ds -	chr2L	695990	intron	ds -	chr2L_14_690001	chr2L_690001	D20-c2
20	chr2L	770462	770493	chr2L	772244	772275	Bari1	19	1781	3.5	6.5	5.0	3.2	1813	chr2L	770462	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772275	intergenic	CR44614 +	chr2L_19_770001	chr2L_770001	D20-c2
28	chr2L	1220128	1220161	chr2L	1227595	1227628	blood	8	7467	40.5	17.5	29.0	0.3	7500	chr2L	1220128	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227628	intron	CG42329 +	chr2L_8_1220001	chr2L_1220001	D20-c2
30	chr2L	1301751	1301782	chr2L	1302291	1302322	gypsy	13	540	4.0	5.5	4.8	2.2	571	chr2L	1301751	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302322	intergenic	not near genes	chr2L_13_1300001	chr2L_1300001	D20-c2
41	chr2L	1570686	1570717	chr2L	1573559	1573590	F-element	21	2873	9.0	8.0	8.5	2.2	2904	chr2L	1570686	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573590	intron	haf +	chr2L_21_1570001	chr2L_1570001	D20-c2
45	chr2L	1678957	1679009	chr2L	1686441	1686475	blood	6	7469	0.5	5.5	3.0	1.5	7518	chr2L	1678957	intron	chinmo +	chr2L	1682716	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	D20-c2
46	chr2L	1711353	1711387	chr2L	1711678	1711712	mdg3	14	325	6.0	4.5	5.2	2.3	359	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_14_1710001	chr2L_1710001	D20-c2
52	chr2L	2100379	2100406	chr2L	2109531	2109546	roo	12	9150	9.0	8.0	8.5	1.3	9167	chr2L	2100379	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_12_2100001	chr2L_2100001	D20-c2
53	chr2L	2112112	2112142	chr2L	2119775	2119805	opus	10	7662	7.0	2.5	4.8	1.7	7693	chr2L	2112112	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119805	intergenic	not near genes	chr2L_10_2115001	chr2L_2115001	D20-c2
57	chr2L	2294038	2294074	chr2L	2299244	2299280	copia	15	5204	4.0	3.5	3.8	3.1	5242	chr2L	2294038	intergenic	not near genes	chr2L	2296659	intergenic	not near genes	chr2L	2299280	intergenic	not near genes	chr2L_15_2295001	chr2L_2295001	D20-c2
61	chr2L	2565551	2565570	chr2L	2571620	2571639	297	4	6070	4.0	0.5	2.2	1.2	6088	chr2L	2565551	exon	Cyp309a2 -	chr2L	2568595	intron	Cyp309a2 -	chr2L	2571639	intron	Cyp309a2 -	chr2L_4_2565001	chr2L_2565001	D20-c2
66	chr2L	2661197	2661232	chr2L	2663036	2663071	I-element	9	1839	2.5	6.0	4.2	1.7	1874	chr2L	2661197	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663071	intergenic	not near genes	chr2L_9_2660001	chr2L_2660001	D20-c2
69	chr2L	2772609	2772629	chr2L	2779194	2779214	297	5	6584	3.5	5.5	4.5	0.9	6605	chr2L	2772609	3` UTR	Syt1 -	chr2L	2775912	intron	Syt1 -	chr2L	2779214	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	D20-c2
75	chr2L	3073028	3073063	chr2L	3078232	3078267	copia	20	5203	7.5	4.0	5.8	2.9	5239	chr2L	3073028	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078267	intron	toc -	chr2L_20_3075001	chr2L_3075001	D20-c2
81	chr2L	3202742	3202768	chr2L	3210172	3210198	mdg1	6	7430	2.5	3.0	2.8	1.6	7456	chr2L	3202742	intergenic	not near genes	chr2L	3206470	intergenic	not near genes	chr2L	3210198	intergenic	CR45336 +	chr2L_6_3205001	chr2L_3205001	D20-c2
83	chr2L	3251493	3251522	chr2L	3259059	3259088	springer	7	7566	5.0	4.0	4.5	1.3	7595	chr2L	3251493	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259088	intergenic	not near genes	chr2L_7_3255001	chr2L_3255001	D20-c2
88	chr2L	3388599	3388621	chr2L	3388841	3388863	pogo	5	242	4.5	8.0	6.2	0.7	264	chr2L	3388599	intergenic	CG42460 -	chr2L	3388731	intergenic	CG42460 -	chr2L	3388863	intergenic	CG42460 -,CR44791 +	chr2L_5_3385001	chr2L_3385001	D20-c2
98	chr2L	4661843	4661853	chr2L	4669424	4669434	opus	4	7581	4.5	7.5	6.0	0.6	7591	chr2L	4661843	intergenic	not near genes	chr2L	4665638	intergenic	not near genes	chr2L	4669434	intergenic	not near genes	chr2L_4_4665001	chr2L_4665001	D20-c2
110	chr2L	5342770	5342799	chr2L	5345151	5345180	Doc	5	2381	2.0	2.0	2.0	1.7	2410	chr2L	5342770	intergenic	not near genes	chr2L	5343975	intergenic	not near genes	chr2L	5345180	intergenic	not near genes	chr2L_5_5340001	chr2L_5340001	D20-c2
114	chr2L	5827722	5827739	chr2L	5836720	5836748	roo	5	9004	2.5	3.5	3.0	1.2	9026	chr2L	5827722	intron	TrissinR +	chr2L	5832235	intron	TrissinR +	chr2L	5836748	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	D20-c2
131	chr2L	6279642	6279654	chr2L	6279722	6279734	INE-1	6	80	2.5	1.0	1.8	2.1	92	chr2L	6279642	intron	Ddr +	chr2L	6279688	intron	Ddr +	chr2L	6279734	intron	Ddr +	chr2L_6_6275001	chr2L_6275001	D20-c2
133	chr2L	6363149	6363177	chr2L	6366075	6366104	Burdock	17	2926	4.0	3.5	3.8	3.5	2955	chr2L	6363149	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366104	intergenic	not near genes	chr2L_17_6360001	chr2L_6360001	D20-c2
134	chr2L	6426852	6426888	chr2L	6445113	6445149	roo	10	18261	2.0	5.5	3.8	2.1	18297	chr2L	6426852	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445149	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	D20-c2
145	chr2L	6876775	6876810	chr2L	6882966	6883002	diver	11	6192	3.0	1.5	2.2	3.4	6227	chr2L	6876775	intron	Nlg2 +	chr2L	6879888	intron	Nlg2 +	chr2L	6883002	intron	Nlg2 +	chr2L_11_6875001	chr2L_6875001	D20-c2
154	chr2L	7343327	7343346	chr2L	7350444	7350463	roo	6	7117	7.5	5.5	6.5	0.8	7136	chr2L	7343327	intron	Wnt6 +	chr2L	7346895	intron	Wnt6 +	chr2L	7350463	intron	Wnt6 +	chr2L_6_7345001	chr2L_7345001	D20-c2
165	chr2L	7959041	7959062	chr2L	7960453	7960474	pogo	10	1412	4.5	0.0	2.2	3.1	1433	chr2L	7959041	intron	Snoo -	chr2L	7959758	intron	Snoo -	chr2L	7960474	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	D20-c2
166	chr2L	7977089	7977109	chr2L	7984065	7984085	297	5	6976	7.0	4.5	5.8	0.7	6996	chr2L	7977089	intron	Snoo -	chr2L	7980587	intron	Snoo -	chr2L	7984085	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	D20-c2
167	chr2L	8013615	8013631	chr2L	8018820	8018836	copia	4	5205	5.0	0.0	2.5	1.1	5221	chr2L	8013615	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018836	intron	Tg +	chr2L_4_8015001	chr2L_8015001	D20-c2
168	chr2L	8018829	8018838	chr2L	8023614	8023623	Doc	4	4785	0.5	2.0	1.2	1.8	4794	chr2L	8018829	intron	Tg +	chr2L	8021226	intron	Tg +	chr2L	8023623	intron	Tg +	chr2L_4_8020001	chr2L_8020001	D20-c2
174	chr2L	8452423	8452442	chr2L	8461595	8461612	roo	7	9172	5.5	2.5	4.0	1.4	9189	chr2L	8452423	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461612	intron	fu12 -	chr2L_7_8455001	chr2L_8455001	D20-c2
178	chr2L	8594480	8594498	chr2L	8601535	8601553	297	6	7055	4.5	3.5	4.0	1.2	7073	chr2L	8594480	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598016	intron	Sema-1a +	chr2L	8601553	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	D20-c2
180	chr2L	8723113	8723140	chr2L	8731491	8731518	Tirant	13	8378	2.5	4.5	3.5	2.9	8405	chr2L	8723113	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731518	intron	raw -	chr2L_13_8725001	chr2L_8725001	D20-c2
189	chr2L	9000277	9000309	chr2L	9007788	9007820	roo	10	7510	6.0	2.0	4.0	2.0	7543	chr2L	9000277	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007820	intergenic	not near genes	chr2L_10_9000001	chr2L_9000001	D20-c2
194	chr2L	9217969	9217994	chr2L	9222757	9222782	Doc	12	4788	4.0	1.5	2.8	3.2	4813	chr2L	9217969	intron	tai +	chr2L	9220376	intron	tai +	chr2L	9222782	intron	tai +	chr2L_12_9220001	chr2L_9220001	D20-c2
214	chr2L	9973723	9973759	chr2L	9980843	9980879	HMS-Beagle	16	7119	6.0	5.0	5.5	2.5	7156	chr2L	9973723	intergenic	not near genes	chr2L	9977301	intergenic	not near genes	chr2L	9980879	intergenic	not near genes	chr2L_16_9975001	chr2L_9975001	D20-c2
220	chr2L	10156321	10156354	chr2L	10163790	10163825	blood	15	7471	1.0	2.5	1.8	5.4	7504	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160073	intron	CG44153 -	chr2L	10163825	intron	CG44153 -	chr2L_15_10160001	chr2L_10160001	D20-c2
229	chr2L	10592843	10592869	chr2L	10600506	10600532	opus	10	7663	2.0	2.0	2.0	3.3	7689	chr2L	10592843	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600532	intron	Trim9 +	chr2L_10_10595001	chr2L_10595001	D20-c2
235	chr2L	10862839	10862874	chr2L	10864454	10864489	Rt1c	14	1614	2.5	3.0	2.8	3.7	1650	chr2L	10862839	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864489	3` UTR	CR43807 -	chr2L_14_10860001	chr2L_10860001	D20-c2
238	chr2L	10946952	10946975	chr2L	10956160	10956190	roo	16	9215	4.0	7.5	5.8	2.4	9238	chr2L	10946952	intron	dpr2 -	chr2L	10951571	intron	dpr2 -	chr2L	10956190	intron	dpr2 -	chr2L_16_10950001	chr2L_10950001	D20-c2
254	chr2L	11540590	11540611	chr2L	11547993	11548014	Tabor	5	7403	3.0	3.0	3.0	1.2	7424	chr2L	11540590	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548014	intergenic	not near genes	chr2L_5_11540001	chr2L_11540001	D20-c2
255	chr2L	11563645	11563662	chr2L	11568850	11568867	copia	6	5205	2.5	4.0	3.2	1.4	5222	chr2L	11563645	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568867	intergenic	not near genes	chr2L_6_11565001	chr2L_11565001	D20-c2
256	chr2L	11614053	11614081	chr2L	11615549	11615577	hopper2	9	1494	2.0	3.0	2.5	2.6	1524	chr2L	11614053	intron	kek2 +	chr2L	11614815	intron	kek2 +	chr2L	11615577	intron	kek2 +	chr2L_9_11610001	chr2L_11610001	D20-c2
261	chr2L	11713504	11713537	chr2L	11720973	11721006	blood	8	7468	2.5	1.5	2.0	2.7	7502	chr2L	11713504	intergenic	not near genes	chr2L	11717255	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_8_11715001	chr2L_11715001	D20-c2
280	chr2L	12558324	12558346	chr2L	12565454	12565476	HMS-Beagle	6	7130	1.0	2.0	1.5	2.4	7152	chr2L	12558324	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565476	intergenic	not near genes	chr2L_6_12560001	chr2L_12560001	D20-c2
282	chr2L	12728925	12728945	chr2L	12729165	12729185	pogo	4	240	3.5	2.5	3.0	1.0	260	chr2L	12728925	intron	MRP +	chr2L	12729055	intron	MRP +	chr2L	12729185	exon	MRP +	chr2L_4_12725001	chr2L_12725001	D20-c2
283	chr2L	12731059	12731089	chr2L	12735827	12735857	F-element	6	4768	2.5	2.5	2.5	1.7	4798	chr2L	12731059	intron	MRP +	chr2L	12733458	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_6_12730001	chr2L_12730001	D20-c2
284	chr2L	12739172	12739203	chr2L	12743954	12743985	Doc	14	4782	4.0	4.5	4.2	2.7	4813	chr2L	12739172	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12743985	exon	MRP +	chr2L_14_12740001	chr2L_12740001	D20-c2
287	chr2L	12781800	12781812	chr2L	12789251	12789263	Quasimodo	5	7451	8.0	4.5	6.2	0.7	7463	chr2L	12781800	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789263	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	D20-c2
288	chr2L	12791601	12791623	chr2L	12795277	12795299	F-element	7	3673	2.0	2.5	2.2	2.2	3698	chr2L	12791601	intergenic	not near genes	chr2L	12793450	intergenic	not near genes	chr2L	12795299	intergenic	not near genes	chr2L_7_12790001	chr2L_12790001	D20-c2
291	chr2L	12861693	12861727	chr2L	12863161	12863195	hobo	10	1468	1.5	4.5	3.0	2.5	1502	chr2L	12861693	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863195	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	D20-c2
293	chr2L	12894016	12894054	chr2L	12895484	12895515	hobo	19	1466	4.0	3.0	3.5	4.2	1499	chr2L	12894016	intergenic	not near genes	chr2L	12894766	intergenic	not near genes	chr2L	12895515	intergenic	not near genes	chr2L_19_12890001	chr2L_12890001	D20-c2
295	chr2L	12933848	12933881	chr2L	12941316	12941349	blood	15	7468	5.5	2.0	3.8	3.1	7501	chr2L	12933848	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941349	intergenic	not near genes	chr2L_15_12935001	chr2L_12935001	D20-c2
307	chr2L	13405649	13405678	chr2L	13410447	13410476	Doc	15	4798	7.0	1.5	4.2	2.9	4827	chr2L	13405649	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410476	intron	CG7110 +	chr2L_15_13405001	chr2L_13405001	D20-c2
308	chr2L	13449461	13449489	chr2L	13456898	13456926	Quasimodo	9	7437	4.5	4.5	4.5	1.6	7465	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453194	intron	CG42784 +	chr2L	13456926	intron	CG42784 +	chr2L_9_13450001	chr2L_13450001	D20-c2
309	chr2L	13481449	13481475	chr2L	13482057	13482083	jockey	11	608	6.0	8.5	7.2	1.3	634	chr2L	13481449	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482083	intron	CG42784 +	chr2L_11_13480001	chr2L_13480001	D20-c2
312	chr2L	13761804	13761833	chr2L	13762916	13762945	Doc	4	1112	1.5	2.5	2.0	1.3	1141	chr2L	13761804	intron	TM9SF4 +	chr2L	13762374	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	D20-c2
313	chr2L	13853089	13853115	chr2L	13862240	13862266	roo	10	9151	4.0	4.5	4.2	1.9	9177	chr2L	13853089	intron	CenG1A +	chr2L	13857678	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_10_13855001	chr2L_13855001	D20-c2
327	chr2L	14642567	14642602	chr2L	14651731	14651766	roo	8	9164	4.5	0.5	2.5	2.3	9199	chr2L	14642567	intron	osp -	chr2L	14647166	intron	osp -	chr2L	14651766	intron	osp -	chr2L_8_14645001	chr2L_14645001	D20-c2
330	chr2L	14803884	14803911	chr2L	14809088	14809115	copia	13	5204	3.5	6.0	4.8	2.2	5231	chr2L	14803884	intergenic	not near genes	chr2L	14806500	intergenic	not near genes	chr2L	14809115	intergenic	not near genes	chr2L_13_14805001	chr2L_14805001	D20-c2
334	chr2L	14889950	14889985	chr2L	14890376	14890411	jockey	4	426	2.0	2.5	2.2	1.2	461	chr2L	14889950	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890411	intergenic	not near genes	chr2L_4_14890001	chr2L_14890001	D20-c2
351	chr2L	15956021	15956055	chr2L	15957489	15957523	hobo	14	1467	3.0	1.5	2.2	4.4	1502	chr2L	15956021	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957523	intron	beat-Ib -	chr2L_14_15955001	chr2L_15955001	D20-c2
355	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	15	145889	21.0	15.5	18.2	0.8	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_15_16140001	chr2L_16140001	D20-c2
356	chr2L	16141173	16141185	chr2L	16146381	16146393	copia	7	5208	2.5	4.5	3.5	1.6	5220	chr2L	16141173	intergenic	not near genes	chr2L	16143783	intergenic	not near genes	chr2L	16146393	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	D20-c2
357	chr2L	16153733	16153749	chr2L	16160788	16160804	297	13	7055	7.0	5.0	6.0	1.9	7071	chr2L	16153733	intergenic	not near genes	chr2L	16157268	intergenic	not near genes	chr2L	16160804	intergenic	not near genes	chr2L_13_16155001	chr2L_16155001	D20-c2
360	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	21.0	15.5	18.2	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	D20-c2
362	chr2L	16280257	16280286	chr2L	16281429	16281458	1360	13	1172	4.0	8.5	6.2	1.8	1201	chr2L	16280257	intron	crp -	chr2L	16280858	intron	crp -	chr2L	16281458	intron	crp -	chr2L_13_16280001	chr2L_16280001	D20-c2
387	chr2L	17167569	17167587	chr2L	17167811	17167829	pogo	7	242	4.0	3.0	3.5	1.6	260	chr2L	17167569	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167699	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167829	intron,intron	CG34106 +,beat-IIIa +	chr2L_7_17165001	chr2L_17165001	D20-c2
388	chr2L	17199157	17199194	chr2L	17200625	17200649	hobo	9	1467	4.0	1.0	2.5	2.6	1492	chr2L	17199157	intron	beat-IIIc -	chr2L	17199903	intron	beat-IIIc -	chr2L	17200649	intron	beat-IIIc -	chr2L_9_17195001	chr2L_17195001	D20-c2
391	chr2L	17273190	17273222	chr2L	17277974	17278006	F-element	7	4784	4.0	2.0	3.0	1.8	4816	chr2L	17273190	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278006	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	D20-c2
399	chr2L	17687515	17687519	chr2L	17692261	17692265	F-element	4	4746	2.0	5.0	3.5	0.9	4750	chr2L	17687515	intron	CadN -	chr2L	17689890	intron	CadN -	chr2L	17692265	intron	CadN -	chr2L_4_17685001	chr2L_17685001	D20-c2
405	chr2L	17819932	17819951	chr2L	17825136	17825155	copia	7	5204	3.0	5.5	4.2	1.3	5223	chr2L	17819932	intron	CadN2 -	chr2L	17822544	intron	CadN2 -	chr2L	17825155	intron	CadN2 -	chr2L_7_17820001	chr2L_17820001	D20-c2
406	chr2L	17911962	17911989	chr2L	17914141	17914176	pogo	9	2184	5.0	2.5	3.8	1.9	2214	chr2L	17911962	intergenic	not near genes	chr2L	17913069	intergenic	not near genes	chr2L	17914176	intergenic	CG43271 -	chr2L_9_17910001	chr2L_17910001	D20-c2
407	chr2L	17951943	17951974	chr2L	17953411	17953442	hobo	7	1468	3.5	2.0	2.8	1.8	1499	chr2L	17951943	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953442	intergenic	not near genes	chr2L_7_17950001	chr2L_17950001	D20-c2
413	chr2L	18051872	18051906	chr2L	18061020	18061054	roo	10	9148	1.5	1.5	1.5	4.0	9182	chr2L	18051872	intron	rdo +	chr2L	18056463	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_10_18055001	chr2L_18055001	D20-c2
420	chr2L	18408030	18408051	chr2L	18412815	18412836	Doc	6	4785	2.5	4.0	3.2	1.4	4806	chr2L	18408030	intergenic	not near genes	chr2L	18410433	intergenic	not near genes	chr2L	18412836	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	D20-c2
435	chr2L	19147368	19147401	chr2L	19154404	19154437	297	8	7036	3.5	2.5	3.0	2.0	7069	chr2L	19147368	intron	brat +	chr2L	19150902	intron	brat +	chr2L	19154437	intron	brat +	chr2L_8_19150001	chr2L_19150001	D20-c2
436	chr2L	19345017	19345050	chr2L	19357227	19357260	blood	9	12210	1.5	8.0	4.8	1.6	12243	chr2L	19345017	intron	dnt -	chr2L	19351138	intron	dnt -	chr2L	19357260	intron	dnt -	chr2L_9_19350001	chr2L_19350001	D20-c2
446	chr2L	19620088	19620131	chr2L	19621078	19621121	jockey	26	989	5.5	2.5	4.0	5.2	1033	chr2L	19620088	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621121	intron	Lar +	chr2L_26_19620001	chr2L_19620001	D20-c2
447	chr2L	19652584	19652603	chr2L	19674020	19674040	opus	8	21437	2.0	3.0	2.5	2.3	21456	chr2L	19652584	intron	Lar +	chr2L	19663312	intron	Lar +	chr2L	19674040	intron	Lar +	chr2L_8_19660001	chr2L_19660001	D20-c2
449	chr2L	19703535	19703570	chr2L	19712672	19712706	roo	13	9137	3.5	3.5	3.5	2.9	9171	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_13_19705001	chr2L_19705001	D20-c2
450	chr2L	19737358	19737387	chr2L	19740828	19740857	1360	6	3469	6.0	8.0	7.0	0.8	3499	chr2L	19737358	intergenic	Nf-YB +	chr2L	19739108	intergenic	not near genes	chr2L	19740857	intergenic	not near genes	chr2L_6_19735001	chr2L_19735001	D20-c2
452	chr2L	19762813	19762836	chr2L	19763056	19763079	pogo	14	243	4.5	5.0	4.8	2.4	266	chr2L	19762813	5` UTR	fbp -	chr2L	19762946	intron	fbp -	chr2L	19763079	intron	fbp -	chr2L_14_19760001	chr2L_19760001	D20-c2
458	chr2L	20005873	20005904	chr2L	20010950	20010981	flea	4	5077	3.5	2.5	3.0	1.0	5108	chr2L	20005873	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20010981	intron	CG43861 -	chr2L_4_20005001	chr2L_20005001	D20-c2
461	chr2L	20272111	20272143	chr2L	20282823	20282855	copia	11	10712	6.0	3.5	4.8	1.9	10744	chr2L	20272111	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_11_20275001	chr2L_20275001	D20-c2
464	chr2L	20372230	20372236	chr2L	20372472	20372478	pogo	4	242	0.0	3.5	1.8	1.4	248	chr2L	20372230	intergenic	Ugt37a1 -	chr2L	20372354	intergenic	Ugt37a1 -	chr2L	20372478	exon	Ugt37a1 -	chr2L_4_20370001	chr2L_20370001	D20-c2
467	chr2L	20568659	20568686	chr2L	20569050	20569077	X-element	10	389	3.0	4.0	3.5	2.2	418	chr2L	20568659	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569077	intron	CR45347 +	chr2L_10_20565001	chr2L_20565001	D20-c2
468	chr2L	20576233	20576252	chr2L	20583702	20583722	blood	5	7470	1.5	3.0	2.2	1.6	7489	chr2L	20576233	intergenic	not near genes	chr2L	20579978	intergenic	not near genes	chr2L	20583722	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	D20-c2
477	chr2L	20901470	20901486	chr2L	20902635	20902651	1360	5	1165	2.5	3.0	2.8	1.3	1181	chr2L	20901470	intron,intron	CG43739 -,sky -	chr2L	20902060	intron,intron	CG43739 -,sky -	chr2L	20902651	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	D20-c2
481	chr2L	20976649	20976679	chr2L	20981465	20981495	X-element	6	4816	2.5	4.5	3.5	1.3	4846	chr2L	20976649	intron	CG42238 -	chr2L	20979072	intron	CG42238 -	chr2L	20981495	intron	CG42238 -	chr2L_6_20975001	chr2L_20975001	D20-c2
483	chr2L	21020275	21020311	chr2L	21023953	21023989	NOF	14	3678	3.5	3.0	3.2	3.3	3714	chr2L	21020275	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023989	intron	CG42238 -	chr2L_14_21020001	chr2L_21020001	D20-c2
484	chr2L	21041139	21041156	chr2L	21049401	21049418	Tirant	6	8262	4.0	3.5	3.8	1.2	8279	chr2L	21041139	intron	CG42238 -	chr2L	21045278	intron	CG42238 -	chr2L	21049418	intron	CG42238 -	chr2L_6_21045001	chr2L_21045001	D20-c2
491	chr2L	21597026	21597060	chr2L	21604771	21604805	roo	4	7745	2.0	2.0	2.0	1.3	7779	chr2L	21597026	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604805	intergenic	not near genes	chr2L_4_21600001	chr2L_21600001	D20-c2
498	chr2L	21981682	21981715	chr2L	21990848	21990881	roo	14	9166	3.0	5.5	4.2	2.7	9199	chr2L	21981682	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_14_21985001	chr2L_21985001	D20-c2
506	chr2L	22258617	22258646	chr2L	22260742	22260771	G6	15	2125	3.0	4.5	3.8	3.1	2154	chr2L	22258617	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260771	intergenic	not near genes	chr2L_15_22255001	chr2L_22255001	D20-c2
507	chr2L	22581968	22581999	chr2L	22583758	22583789	S-element	7	1790	1.0	1.5	1.2	3.2	1821	chr2L	22581968	intron	CG17494 +	chr2L	22582878	intron	CG17494 +	chr2L	22583789	intron	CG17494 +	chr2L_7_22580001	chr2L_22580001	D20-c2
508	chr2L	22679800	22679824	chr2L	22684573	22684597	F-element	7	4773	3.0	3.0	3.0	1.8	4797	chr2L	22679800	intron	CG40006 -	chr2L	22682198	intron	CG40006 -	chr2L	22684597	intron	CG40006 -	chr2L_7_22680001	chr2L_22680001	D20-c2
510	chr2L	22776429	22776448	chr2L	22778219	22778238	S-element	6	1790	1.5	4.0	2.8	1.6	1809	chr2L	22776429	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778238	intergenic	not near genes	chr2L_6_22775001	chr2L_22775001	D20-c2
511	chr2L	23006692	23006707	chr2L	23007000	23007015	Osvaldo	4	308	12.5	11.0	11.8	0.3	323	chr2L	23006692	intron	Cht3 -	chr2L	23006854	intron	Cht3 -	chr2L	23007015	intron	Cht3 -	chr2L_4_23005001	chr2L_23005001	D20-c2
512	chr2R	529328	529348	chr2R	537954	537974	Max-element	4	8626	4.5	4.0	4.2	0.8	8646	chr2R	529328	intron	CG40378 +	chr2R	533651	intron	CG40378 +	chr2R	537974	intron	CG40378 +	chr2R_4_530001	chr2R_530001	D20-c2
513	chr2R	552759	552787	chr2R	553978	553989	1360	6	1216	5.0	15.5	10.2	0.5	1230	chr2R	552759	intron	CG40378 +	chr2R	553374	intron	CG40378 +	chr2R	553989	intron	CG40378 +	chr2R_6_550001	chr2R_550001	D20-c2
514	chr2R	1082370	1082385	chr2R	1087135	1087162	Doc	10	4776	9.5	4.0	6.8	1.3	4792	chr2R	1082370	intron	rl +	chr2R	1084766	intron	rl +	chr2R	1087162	intron	rl +	chr2R_10_1080001	chr2R_1080001	D20-c2
516	chr2R	2498986	2499016	chr2R	2508134	2508164	roo	6	9148	2.5	3.0	2.8	1.6	9178	chr2R	2498986	intron	MFS17 -	chr2R	2503575	intron	MFS17 -	chr2R	2508164	intron	MFS17 -	chr2R_6_2500001	chr2R_2500001	D20-c2
517	chr2R	2591548	2591558	chr2R	2594225	2594235	roo	5	2677	15.0	10.0	12.5	0.4	2687	chr2R	2591548	intergenic	not near genes	chr2R	2592892	intergenic	not near genes	chr2R	2594235	intergenic	not near genes	chr2R_5_2590001	chr2R_2590001	D20-c2
523	chr2R	4622954	4622983	chr2R	4624114	4624143	1360	5	1160	5.0	8.0	6.5	0.7	1189	chr2R	4622954	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624143	intergenic	not near genes	chr2R_5_4620001	chr2R_4620001	D20-c2
524	chr2R	4750343	4750374	chr2R	4751501	4751532	1360	5	1158	4.0	7.0	5.5	0.8	1189	chr2R	4750343	intron	conu +	chr2R	4750938	intron	conu +	chr2R	4751532	intron	conu +	chr2R_5_4750001	chr2R_4750001	D20-c2
542	chr2R	5417992	5418026	chr2R	5420624	5420659	Burdock	16	2633	2.5	2.0	2.2	5.0	2667	chr2R	5417992	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420659	intron	laccase2 +	chr2R_16_5415001	chr2R_5415001	D20-c2
552	chr2R	5869277	5869308	chr2R	5874354	5874385	flea	11	5076	4.5	4.5	4.5	2.0	5108	chr2R	5869277	intergenic	not near genes	chr2R	5871831	intergenic	not near genes	chr2R	5874385	intergenic	not near genes	chr2R_11_5870001	chr2R_5870001	D20-c2
555	chr2R	5902154	5902183	chr2R	5909714	5909743	17.6	9	7560	3.0	1.0	2.0	3.0	7589	chr2R	5902154	intron	CG43366 +	chr2R	5905948	intron	CG43366 +	chr2R	5909743	intron	CG43366 +	chr2R_9_5905001	chr2R_5905001	D20-c2
557	chr2R	6096714	6096751	chr2R	6101913	6101950	BS	13	5199	6.5	3.5	5.0	2.2	5236	chr2R	6096714	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101950	intron	EcR -	chr2R_13_6095001	chr2R_6095001	D20-c2
571	chr2R	7196566	7196584	chr2R	7201342	7201360	F-element	5	4776	3.0	3.0	3.0	1.2	4794	chr2R	7196566	intron	pk +	chr2R	7198963	intron	pk +	chr2R	7201360	intron	pk +	chr2R_5_7195001	chr2R_7195001	D20-c2
572	chr2R	7235825	7235851	chr2R	7240912	7240944	jockey	14	5092	3.5	3.0	3.2	3.3	5119	chr2R	7235825	intergenic	not near genes	chr2R	7238384	intergenic	not near genes	chr2R	7240944	intergenic	not near genes	chr2R_14_7235001	chr2R_7235001	D20-c2
576	chr2R	7434893	7434918	chr2R	7439195	7439220	Juan	10	4302	3.5	4.5	4.0	2.0	4327	chr2R	7434893	intergenic	so +	chr2R	7437056	intergenic	not near genes	chr2R	7439220	intergenic	not near genes	chr2R_10_7435001	chr2R_7435001	D20-c2
577	chr2R	7608416	7608431	chr2R	7613620	7613635	I-element	4	5204	3.5	0.0	1.8	1.4	5219	chr2R	7608416	intron	CG1358 -	chr2R	7611026	intron	CG1358 -	chr2R	7613635	intron	CG1358 -	chr2R_4_7610001	chr2R_7610001	D20-c2
583	chr2R	7815672	7815702	chr2R	7822142	7822172	Burdock	12	6469	2.0	5.5	3.8	2.5	6500	chr2R	7815672	intergenic	CG1882 +	chr2R	7818922	intergenic	not near genes	chr2R	7822172	3` UTR	cathD -	chr2R_12_7815001	chr2R_7815001	D20-c2
585	chr2R	7869188	7869217	chr2R	7873975	7874004	Doc	8	4787	2.5	6.0	4.2	1.5	4816	chr2R	7869188	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874004	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	D20-c2
593	chr2R	8160933	8160951	chr2R	8161024	8161042	1360	4	91	18.0	25.0	21.5	0.2	109	chr2R	8160933	intron	CG8708 -	chr2R	8160988	intron	CG8708 -	chr2R	8161042	intron	CG8708 -	chr2R_4_8160001	chr2R_8160001	D20-c2
595	chr2R	8330862	8330883	chr2R	8331349	8331370	roo	9	487	7.0	3.0	5.0	1.5	508	chr2R	8330862	intron	pdm3 +	chr2R	8331116	intron	pdm3 +	chr2R	8331370	intron	pdm3 +	chr2R_9_8330001	chr2R_8330001	D20-c2
596	chr2R	8398207	8398243	chr2R	8402989	8403025	Doc	27	4782	6.0	5.5	5.8	4.0	4818	chr2R	8398207	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403025	intron	CG2121 -	chr2R_27_8400001	chr2R_8400001	D20-c2
601	chr2R	8722769	8722794	chr2R	8723004	8723036	pogo	9	241	3.0	5.5	4.2	1.7	267	chr2R	8722769	intron	CG14767 -	chr2R	8722902	intron	CG14767 -	chr2R	8723036	intron	CG14767 -	chr2R_9_8720001	chr2R_8720001	D20-c2
603	chr2R	8777932	8777946	chr2R	8784137	8784151	diver	8	6205	0.0	2.5	1.2	3.6	6219	chr2R	8777932	intergenic	not near genes	chr2R	8781042	intergenic	not near genes	chr2R	8784151	intergenic	not near genes	chr2R_8_8780001	chr2R_8780001	D20-c2
610	chr2R	9151299	9151330	chr2R	9157770	9157801	Burdock	12	6471	4.0	1.0	2.5	3.4	6502	chr2R	9151299	exon	CG30345 +	chr2R	9154550	intergenic	not near genes	chr2R	9157801	intergenic	CG8008 -	chr2R_12_9150001	chr2R_9150001	D20-c2
611	chr2R	9212693	9212724	chr2R	9213180	9213210	roo	16	487	5.0	10.0	7.5	1.9	517	chr2R	9212693	intergenic	CR45309 +	chr2R	9212952	intergenic	CR45309 +	chr2R	9213210	5` UTR	CR45309 +	chr2R_16_9210001	chr2R_9210001	D20-c2
629	chr2R	9726613	9726637	chr2R	9734165	9734189	17.6	7	7552	6.5	2.0	4.2	1.3	7576	chr2R	9726613	intron	sqa -	chr2R	9730401	intron	sqa -	chr2R	9734189	intron	sqa -	chr2R_7_9730001	chr2R_9730001	D20-c2
630	chr2R	9871047	9871074	chr2R	9871534	9871561	roo	12	487	1.0	7.0	4.0	2.4	514	chr2R	9871047	intron	cbx -	chr2R	9871304	intron	cbx -	chr2R	9871561	intron,5` UTR	cbx -,CG18446 +	chr2R_12_9870001	chr2R_9870001	D20-c2
631	chr2R	9945433	9945469	chr2R	9945630	9945666	BS	14	197	2.5	3.0	2.8	3.7	233	chr2R	9945433	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945666	intron	Mef2 -	chr2R_14_9945001	chr2R_9945001	D20-c2
633	chr2R	10005845	10005879	chr2R	10007011	10007045	1360	13	1166	4.5	5.5	5.0	2.2	1200	chr2R	10005845	intron	Pka-R2 -	chr2R	10006445	intron	Pka-R2 -	chr2R	10007045	intron	Pka-R2 -	chr2R_13_10005001	chr2R_10005001	D20-c2
640	chr2R	10176878	10176902	chr2R	10186046	10186070	roo	8	9168	2.5	3.0	2.8	2.1	9192	chr2R	10176878	intron	KCNQ -	chr2R	10181474	intron	KCNQ -	chr2R	10186070	intron	KCNQ -	chr2R_8_10180001	chr2R_10180001	D20-c2
655	chr2R	10585576	10585591	chr2R	10594160	10594175	Tirant	9	8583	1.0	5.0	3.0	2.2	8599	chr2R	10585576	intron	psq +	chr2R	10589876	intron	psq +	chr2R	10594175	intron	psq +	chr2R_9_10585001	chr2R_10585001	D20-c2
656	chr2R	10622350	10622368	chr2R	10637116	10637134	mdg1	6	14766	2.0	2.5	2.2	1.9	14784	chr2R	10622350	intron	CG11883 +	chr2R	10629742	intron	CG11883 +	chr2R	10637134	intron	CG11883 +	chr2R_6_10625001	chr2R_10625001	D20-c2
662	chr2R	10979662	10979679	chr2R	10980133	10980150	297	8	471	3.5	2.0	2.8	2.1	488	chr2R	10979662	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980150	intergenic	not near genes	chr2R_8_10975001	chr2R_10975001	D20-c2
663	chr2R	11009816	11009834	chr2R	11018991	11019009	roo	5	9175	3.5	2.5	3.0	1.2	9193	chr2R	11009816	intron	luna -	chr2R	11014412	intron	luna -	chr2R	11019009	intron	luna -	chr2R_5_11010001	chr2R_11010001	D20-c2
664	chr2R	11019875	11019910	chr2R	11024942	11024977	jockey	10	5067	6.0	2.5	4.2	1.9	5102	chr2R	11019875	intron	luna -	chr2R	11022426	intron	luna -	chr2R	11024977	intron	luna -	chr2R_10_11020001	chr2R_11020001	D20-c2
665	chr2R	11134113	11134140	chr2R	11134355	11134382	pogo	8	242	2.0	2.0	2.0	2.7	269	chr2R	11134113	intergenic	not near genes	chr2R	11134248	intergenic	not near genes	chr2R	11134382	intergenic	not near genes	chr2R_8_11130001	chr2R_11130001	D20-c2
667	chr2R	11207812	11207842	chr2R	11208005	11208035	BS	9	193	7.0	2.0	4.5	1.6	223	chr2R	11207812	intron	shn +	chr2R	11207924	intron	shn +	chr2R	11208035	intron	shn +	chr2R_9_11205001	chr2R_11205001	D20-c2
670	chr2R	11297640	11297650	chr2R	11301962	11301972	flea	5	4321	5.5	0.5	3.0	1.2	4332	chr2R	11297640	intergenic	CG42336 -	chr2R	11299806	intergenic	not near genes	chr2R	11301972	5` UTR	CG7741 +	chr2R_5_11295001	chr2R_11295001	D20-c2
672	chr2R	11415515	11415547	chr2R	11418665	11418697	opus	9	3150	8.5	4.5	6.5	1.2	3182	chr2R	11415515	intron	Drip -	chr2R	11417106	intron	Drip -	chr2R	11418697	intron	Drip -	chr2R_9_11415001	chr2R_11415001	D20-c2
673	chr2R	11472648	11472680	chr2R	11473846	11473878	pogo	13	1198	5.0	4.0	4.5	2.4	1230	chr2R	11472648	intergenic	not near genes	chr2R	11473263	intergenic	not near genes	chr2R	11473878	intergenic	not near genes	chr2R_13_11470001	chr2R_11470001	D20-c2
686	chr2R	12481138	12481169	chr2R	12482943	12482974	roo	16	1803	5.0	5.5	5.2	2.6	1836	chr2R	12481138	exon	Dh44-R2 +	chr2R	12482056	intron	Dh44-R2 +	chr2R	12482974	intron	Dh44-R2 +	chr2R_16_12480001	chr2R_12480001	D20-c2
687	chr2R	12501696	12501722	chr2R	12503848	12503885	Rt1c	10	2161	3.0	2.0	2.5	2.9	2189	chr2R	12501696	intron	fdl -	chr2R	12502790	intron	fdl -	chr2R	12503885	intron	fdl -	chr2R_10_12500001	chr2R_12500001	D20-c2
697	chr2R	12789300	12789328	chr2R	12797655	12797673	roo	9	8359	2.0	4.0	3.0	2.2	8373	chr2R	12789300	intron,3` UTR	sca +,CR45137 -	chr2R	12793486	intron,intron	sca +,CR45137 -	chr2R	12797673	intron,3` UTR	sca +,CR45137 -	chr2R_9_12790001	chr2R_12790001	D20-c2
698	chr2R	12819461	12819478	chr2R	12824525	12824542	jockey	7	5064	1.0	5.5	3.2	1.7	5081	chr2R	12819461	intergenic	not near genes	chr2R	12822002	intergenic	not near genes	chr2R	12824542	intergenic	not near genes	chr2R_7_12820001	chr2R_12820001	D20-c2
702	chr2R	13136840	13136869	chr2R	13141639	13141668	Doc	15	4799	6.0	5.0	5.5	2.3	4828	chr2R	13136840	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141668	intron	Cap-G +	chr2R_15_13135001	chr2R_13135001	D20-c2
713	chr2R	13580500	13580528	chr2R	13580851	13580879	jockey	14	351	2.5	6.5	4.5	2.5	379	chr2R	13580500	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580879	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_14_13580001	chr2R_13580001	D20-c2
717	chr2R	13728133	13728158	chr2R	13735791	13735816	opus	6	7658	4.0	2.0	3.0	1.5	7683	chr2R	13728133	intron	fas +	chr2R	13731974	intron	fas +	chr2R	13735816	intron	fas +	chr2R_6_13730001	chr2R_13730001	D20-c2
720	chr2R	13905609	13905635	chr2R	13907592	13907618	Rt1a	9	1983	5.5	10.0	7.8	1.0	2009	chr2R	13905609	intron	shot -	chr2R	13906614	intron	shot -	chr2R	13907618	intron	shot -	chr2R_9_13905001	chr2R_13905001	D20-c2
726	chr2R	14467304	14467326	chr2R	14476463	14476485	roo	10	9159	1.0	2.5	1.8	3.6	9181	chr2R	14467304	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476485	5` UTR	CR44462 +	chr2R_10_14470001	chr2R_14470001	D20-c2
739	chr2R	15004726	15004742	chr2R	15005056	15005072	jockey	4	330	5.0	4.5	4.8	0.7	346	chr2R	15004726	intergenic	not near genes	chr2R	15004899	intergenic	not near genes	chr2R	15005072	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	D20-c2
740	chr2R	15015453	15015488	chr2R	15022878	15022913	mdg1	10	7425	4.0	1.5	2.8	2.6	7460	chr2R	15015453	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022913	intron	hbs +	chr2R_10_15015001	chr2R_15015001	D20-c2
743	chr2R	15119317	15119350	chr2R	15127799	15127832	Tirant	6	8482	4.5	4.0	4.2	1.2	8515	chr2R	15119317	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127832	intron	chn +	chr2R_6_15120001	chr2R_15120001	D20-c2
760	chr2R	16539648	16539668	chr2R	16544858	16544878	copia	4	5210	5.5	3.0	4.2	0.8	5230	chr2R	16539648	intergenic	not near genes	chr2R	16542263	intergenic	not near genes	chr2R	16544878	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	D20-c2
764	chr2R	17147238	17147276	chr2R	17152270	17152307	jockey	10	5032	2.5	4.5	3.5	2.2	5069	chr2R	17147238	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152307	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	D20-c2
766	chr2R	17236510	17236538	chr2R	17241715	17241743	copia	8	5205	4.0	3.5	3.8	1.7	5233	chr2R	17236510	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_8_17235001	chr2R_17235001	D20-c2
767	chr2R	17485919	17485931	chr2R	17490690	17490702	F-element	5	4771	4.5	1.0	2.8	1.3	4783	chr2R	17485919	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488310	intron	NT5E-2 +	chr2R	17490702	intron	NT5E-2 +	chr2R_5_17485001	chr2R_17485001	D20-c2
776	chr2R	18045678	18045697	chr2R	18046031	18046050	jockey	4	353	1.5	2.5	2.0	1.3	372	chr2R	18045678	intergenic	not near genes	chr2R	18045864	intergenic	not near genes	chr2R	18046050	intergenic	CG5767 -	chr2R_4_18045001	chr2R_18045001	D20-c2
777	chr2R	18111685	18111716	chr2R	18115554	18115585	F-element	4	3869	2.5	2.0	2.2	1.2	3900	chr2R	18111685	intergenic	not near genes	chr2R	18113635	intergenic	not near genes	chr2R	18115585	intergenic	not near genes	chr2R_4_18110001	chr2R_18110001	D20-c2
782	chr2R	18358395	18358421	chr2R	18372608	18372634	roo	11	14213	2.0	4.5	3.2	2.6	14239	chr2R	18358395	intergenic	not near genes	chr2R	18365514	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_11_18365001	chr2R_18365001	D20-c2
787	chr2R	18575795	18575829	chr2R	18581984	18582018	3S18	13	6185	5.5	6.5	6.0	1.9	6223	chr2R	18575795	intron	GEFmeso -	chr2R	18578906	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_13_18575001	chr2R_18575001	D20-c2
788	chr2R	18590866	18590899	chr2R	18600019	18600052	roo	16	9153	5.0	5.0	5.0	2.7	9186	chr2R	18590866	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600052	intron	GEFmeso -	chr2R_16_18595001	chr2R_18595001	D20-c2
808	chr2R	19776594	19776630	chr2R	19779918	19779954	jockey	11	3324	3.5	3.5	3.5	2.4	3360	chr2R	19776594	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779954	intergenic	not near genes	chr2R_11_19775001	chr2R_19775001	D20-c2
811	chr2R	19914846	19914872	chr2R	19922259	19922285	mdg1	6	7413	2.5	2.5	2.5	1.7	7439	chr2R	19914846	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922285	intergenic	not near genes	chr2R_6_19915001	chr2R_19915001	D20-c2
814	chr2R	19957432	19957444	chr2R	19962631	19962647	copia	7	5201	7.5	4.0	5.8	1.0	5215	chr2R	19957432	intergenic	CG44623 +	chr2R	19960040	intergenic	not near genes	chr2R	19962647	intergenic	not near genes	chr2R_7_19960001	chr2R_19960001	D20-c2
816	chr2R	20069243	20069273	chr2R	20071874	20071904	opus	8	2631	2.5	5.5	4.0	1.6	2661	chr2R	20069243	intergenic	not near genes	chr2R	20070574	intergenic	not near genes	chr2R	20071904	intergenic	not near genes	chr2R_8_20070001	chr2R_20070001	D20-c2
820	chr2R	20739439	20739473	chr2R	20744208	20744242	F-element	15	4769	2.0	4.5	3.2	3.6	4803	chr2R	20739439	intron	dpr +	chr2R	20741840	intron	dpr +	chr2R	20744242	intron	dpr +	chr2R_15_20740001	chr2R_20740001	D20-c2
821	chr2R	20783313	20783333	chr2R	20788086	20788106	F-element	5	4773	0.5	2.0	1.2	2.3	4793	chr2R	20783313	intergenic	not near genes	chr2R	20785710	intergenic	not near genes	chr2R	20788106	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	D20-c2
828	chr2R	21151115	21151145	chr2R	21153749	21153779	opus	8	2634	3.5	7.0	5.2	1.3	2664	chr2R	21151115	intron	CG30389 -	chr2R	21152447	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_8_21150001	chr2R_21150001	D20-c2
840	chr2R	21753090	21753115	chr2R	21753576	21753601	roo	7	486	7.0	5.5	6.2	1.0	511	chr2R	21753090	intergenic	not near genes	chr2R	21753346	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	D20-c2
841	chr2R	21809527	21809558	chr2R	21817768	21817799	roo	8	8241	3.0	3.5	3.2	1.9	8272	chr2R	21809527	intergenic	not near genes	chr2R	21813663	intergenic	not near genes	chr2R	21817799	intergenic	not near genes	chr2R_8_21810001	chr2R_21810001	D20-c2
857	chr2R	22349700	22349714	chr2R	22351485	22351499	jockey	4	1785	5.5	6.0	5.8	0.6	1799	chr2R	22349700	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351499	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	D20-c2
858	chr2R	22360380	22360393	chr2R	22360814	22360827	jockey	6	434	5.0	4.0	4.5	1.1	447	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360827	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	D20-c2
863	chr2R	22525761	22525782	chr2R	22529317	22529338	jockey	5	3556	3.5	5.5	4.5	0.9	3577	chr2R	22525761	intron	px -	chr2R	22527550	intron	px -	chr2R	22529338	intron	px -	chr2R_5_22525001	chr2R_22525001	D20-c2
867	chr2R	22774971	22775002	chr2R	22775391	22775422	jockey	9	420	2.5	3.0	2.8	2.4	451	chr2R	22774971	intron	CG42260 -	chr2R	22775196	intron	CG42260 -	chr2R	22775422	intron	CG42260 -	chr2R_9_22775001	chr2R_22775001	D20-c2
887	chr2R	23529571	23529606	chr2R	23537148	23537183	412	16	7576	2.5	8.5	5.5	2.5	7612	chr2R	23529571	intron	bw -	chr2R	23533377	intron	bw -	chr2R	23537183	exon	bw -	chr2R_16_23530001	chr2R_23530001	D20-c2
896	chr2R	23914310	23914332	chr2R	23921935	23921957	412	14	7625	4.5	11.0	7.8	1.6	7647	chr2R	23914310	exon	kcc +	chr2R	23918134	intron	kcc +	chr2R	23921957	intron	kcc +	chr2R_14_23915001	chr2R_23915001	D20-c2
900	chr2R	24147065	24147097	chr2R	24154644	24154676	412	16	7578	5.0	5.0	5.0	2.7	7611	chr2R	24147065	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154676	intron	Dat +	chr2R_16_24150001	chr2R_24150001	D20-c2
901	chr2R	24177233	24177268	chr2R	24184719	24184754	412	5	7486	2.5	1.0	1.8	1.8	7521	chr2R	24177233	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184754	3` UTR	Nop60B +	chr2R_5_24180001	chr2R_24180001	D20-c2
907	chr2R	24647589	24647618	chr2R	24655147	24655176	412	8	7557	3.5	5.0	4.2	1.5	7587	chr2R	24647589	intergenic	not near genes	chr2R	24651382	intergenic	not near genes	chr2R	24655176	intergenic	not near genes	chr2R_8_24650001	chr2R_24650001	D20-c2
908	chr2R	24727884	24727911	chr2R	24735393	24735420	mdg1	7	7509	6.0	6.5	6.2	1.0	7536	chr2R	24727884	intron	Mid1 -	chr2R	24731652	intron	Mid1 -	chr2R	24735420	intron	Mid1 -	chr2R_7_24730001	chr2R_24730001	D20-c2
910	chr2R	24763607	24763638	chr2R	24765584	24765615	G2	17	1976	3.0	4.0	3.5	3.8	2008	chr2R	24763607	exon	CG3894 +	chr2R	24764611	intron	CG3894 +	chr2R	24765615	exon	CG3894 +	chr2R_17_24760001	chr2R_24760001	D20-c2
918	chr2R	25141652	25141683	chr2R	25159343	25159374	roo	5	17691	3.0	2.5	2.8	1.3	17722	chr2R	25141652	intergenic	not near genes	chr2R	25150513	intergenic	not near genes	chr2R	25159374	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	D20-c2
926	chr3L	110208	110243	chr3L	119376	119411	roo	19	9168	7.5	6.5	7.0	2.4	9203	chr3L	110208	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119411	intergenic	not near genes	chr3L_19_110001	chr3L_110001	D20-c2
929	chr3L	402686	402717	chr3L	409740	409771	297	35	7054	12.5	10.0	11.2	2.9	7085	chr3L	402686	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_35_405001	chr3L_405001	D20-c2
938	chr3L	789911	789945	chr3L	790397	790431	roo	10	486	5.0	3.5	4.2	1.9	520	chr3L	789911	intergenic	not near genes	chr3L	790171	intergenic	not near genes	chr3L	790431	intergenic	not near genes	chr3L_10_790001	chr3L_790001	D20-c2
939	chr3L	857999	858032	chr3L	866481	866514	Tirant	23	8481	4.0	8.0	6.0	3.3	8515	chr3L	857999	intergenic	not near genes	chr3L	862256	intergenic	not near genes	chr3L	866514	5` UTR	CG12502 +	chr3L_23_860001	chr3L_860001	D20-c2
941	chr3L	925175	925208	chr3L	932602	932635	mdg1	15	7427	2.5	3.0	2.8	3.9	7460	chr3L	925175	intron	Glut1 +	chr3L	928905	intron	Glut1 +	chr3L	932635	intron	Glut1 +	chr3L_15_925001	chr3L_925001	D20-c2
943	chr3L	939771	939800	chr3L	940893	940922	jockey	13	1122	2.5	7.0	4.8	2.2	1151	chr3L	939771	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_13_940001	chr3L_940001	D20-c2
946	chr3L	1047380	1047385	chr3L	1055162	1055190	412	8	7799	3.0	1.5	2.2	2.5	7810	chr3L	1047380	intron	bab1 -	chr3L	1051285	intron	bab1 -	chr3L	1055190	intron	bab1 -	chr3L_8_1050001	chr3L_1050001	D20-c2
950	chr3L	1154128	1154155	chr3L	1163279	1163306	roo	9	9151	3.5	3.0	3.2	2.1	9178	chr3L	1154128	intron	bab2 -	chr3L	1158717	intron	bab2 -	chr3L	1163306	intron	bab2 -	chr3L_9_1155001	chr3L_1155001	D20-c2
951	chr3L	1219593	1219625	chr3L	1227327	1227359	412	17	7734	5.0	5.5	5.2	2.7	7766	chr3L	1219593	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227359	intron	mwh +	chr3L_17_1220001	chr3L_1220001	D20-c2
958	chr3L	1505994	1506031	chr3L	1513592	1513629	17.6	22	7598	7.0	2.5	4.8	3.8	7635	chr3L	1505994	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513629	intron,intron	Psa +,cue -	chr3L_22_1505001	chr3L_1505001	D20-c2
966	chr3L	2108260	2108270	chr3L	2113465	2113475	copia	5	5205	3.5	3.5	3.5	1.1	5215	chr3L	2108260	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113475	intron	sls -	chr3L_5_2110001	chr3L_2110001	D20-c2
981	chr3L	2447501	2447538	chr3L	2456658	2456695	roo	15	9157	4.5	4.0	4.2	2.9	9194	chr3L	2447501	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456695	intron	CG45186 +	chr3L_15_2450001	chr3L_2450001	D20-c2
987	chr3L	2927837	2927872	chr3L	2936115	2936149	Tirant	8	8278	3.0	0.5	1.8	2.9	8312	chr3L	2927837	intron	Shab +	chr3L	2931993	intron	Shab +	chr3L	2936149	intron	Shab +	chr3L_8_2930001	chr3L_2930001	D20-c2
988	chr3L	3061282	3061317	chr3L	3069866	3069901	Tirant	10	8584	3.0	2.5	2.8	2.6	8619	chr3L	3061282	intron	CG32486 -	chr3L	3065592	intron	CG32486 -	chr3L	3069901	intron	CG32486 -	chr3L_10_3065001	chr3L_3065001	D20-c2
991	chr3L	3281438	3281475	chr3L	3281935	3281972	Doc	19	496	2.5	5.5	4.0	3.8	534	chr3L	3281438	intron	CG12017 +	chr3L	3281705	intron	CG12017 +	chr3L	3281972	intron	CG12017 +	chr3L_19_3280001	chr3L_3280001	D20-c2
998	chr3L	3475074	3475109	chr3L	3475519	3475554	jockey	12	445	2.0	4.5	3.2	2.9	480	chr3L	3475074	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_12_3475001	chr3L_3475001	D20-c2
1002	chr3L	3601298	3601324	chr3L	3606610	3606636	copia	5	5312	4.5	1.5	3.0	1.2	5338	chr3L	3601298	intron	Eip63E +	chr3L	3603967	intron	Eip63E +	chr3L	3606636	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	D20-c2
1008	chr3L	3833740	3833768	chr3L	3833982	3834010	pogo	7	242	3.5	3.5	3.5	1.6	270	chr3L	3833740	intron	enc +	chr3L	3833875	intron	enc +	chr3L	3834010	intron	enc +	chr3L_7_3830001	chr3L_3830001	D20-c2
1016	chr3L	4901125	4901155	chr3L	4907316	4907346	diver	7	6191	2.5	1.5	2.0	2.3	6221	chr3L	4901125	intergenic	CG13704 +	chr3L	4904236	intergenic	not near genes	chr3L	4907346	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	D20-c2
1020	chr3L	5045453	5045482	chr3L	5050235	5050264	Doc	8	4782	4.0	1.0	2.5	2.3	4811	chr3L	5045453	intron	Con -	chr3L	5047858	intron	Con -	chr3L	5050264	intron	Con -	chr3L_8_5045001	chr3L_5045001	D20-c2
1026	chr3L	5458059	5458066	chr3L	5466662	5466669	Max-element	5	8603	11.0	2.0	6.5	0.7	8610	chr3L	5458059	intergenic	not near genes	chr3L	5462364	intergenic	not near genes	chr3L	5466669	intergenic	not near genes	chr3L_5_5460001	chr3L_5460001	D20-c2
1030	chr3L	5537733	5537754	chr3L	5538076	5538097	jockey	7	342	3.5	2.0	2.8	1.8	364	chr3L	5537733	intergenic	not near genes	chr3L	5537915	intergenic	CG10625 -	chr3L	5538097	intergenic	CG10625 -	chr3L_7_5535001	chr3L_5535001	D20-c2
1034	chr3L	5910033	5910061	chr3L	5910275	5910303	pogo	6	242	1.0	4.0	2.5	1.7	270	chr3L	5910033	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910303	intron	CG13288 +	chr3L_6_5910001	chr3L_5910001	D20-c2
1035	chr3L	5926319	5926349	chr3L	5926510	5926540	BS	15	190	2.5	6.5	4.5	2.7	221	chr3L	5926319	intron	Vap-33B +	chr3L	5926430	intron	Vap-33B +	chr3L	5926540	intron	Vap-33B +	chr3L_15_5925001	chr3L_5925001	D20-c2
1038	chr3L	6001684	6001716	chr3L	6004385	6004417	jockey	8	2701	3.5	0.0	1.8	2.9	2733	chr3L	6001684	intron	PVRAP +	chr3L	6003050	intron	PVRAP +	chr3L	6004417	intron	PVRAP +	chr3L_8_6000001	chr3L_6000001	D20-c2
1042	chr3L	6220914	6220948	chr3L	6230067	6230101	roo	14	9153	4.5	3.5	4.0	2.8	9187	chr3L	6220914	5` UTR	pncr008:3L +	chr3L	6225508	intergenic	not near genes	chr3L	6230101	intergenic	not near genes	chr3L_14_6225001	chr3L_6225001	D20-c2
1043	chr3L	6335008	6335033	chr3L	6335479	6335505	297	11	472	7.0	1.5	4.2	2.1	497	chr3L	6335008	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335505	intron	CG13300 -	chr3L_11_6335001	chr3L_6335001	D20-c2
1047	chr3L	6405669	6405686	chr3L	6432134	6432151	roo	4	26465	3.0	1.5	2.2	1.2	26482	chr3L	6405669	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432151	intron	CG42747 +	chr3L_4_6415001	chr3L_6415001	D20-c2
1056	chr3L	6887526	6887549	chr3L	6895019	6895042	roo	4	7493	3.5	1.0	2.2	1.2	7516	chr3L	6887526	intergenic	not near genes	chr3L	6891284	intergenic	not near genes	chr3L	6895042	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	D20-c2
1057	chr3L	6994886	6994915	chr3L	6995498	6995527	BS	5	612	1.0	1.0	1.0	2.5	641	chr3L	6994886	intergenic	bin +	chr3L	6995206	intergenic	not near genes	chr3L	6995527	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	D20-c2
1075	chr3L	7793711	7793742	chr3L	7800764	7800795	297	11	7053	3.0	4.5	3.8	2.3	7084	chr3L	7793711	intron	CG32369 -	chr3L	7797253	intron	CG32369 -	chr3L	7800795	intron	CG32369 -	chr3L_11_7795001	chr3L_7795001	D20-c2
1080	chr3L	7886524	7886543	chr3L	7889043	7889062	Stalker4	7	2519	0.0	3.0	1.5	2.8	2538	chr3L	7886524	intron	CG32365 +	chr3L	7887793	intron	CG32365 +	chr3L	7889062	intron	CG32365 +	chr3L_7_7885001	chr3L_7885001	D20-c2
1081	chr3L	7916840	7916848	chr3L	7926012	7926020	roo	4	9172	0.5	3.0	1.8	1.4	9180	chr3L	7916840	3` UTR	syd -	chr3L	7921430	intron	syd -	chr3L	7926020	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	D20-c2
1082	chr3L	7985360	7985387	chr3L	7987689	7987716	NOF	11	2329	7.5	3.5	5.5	1.7	2356	chr3L	7985360	intron	nmo +	chr3L	7986538	intron	nmo +	chr3L	7987716	intron	nmo +	chr3L_11_7985001	chr3L_7985001	D20-c2
1084	chr3L	8481769	8481804	chr3L	8490929	8490964	roo	24	9158	7.5	6.0	6.8	3.1	9195	chr3L	8481769	intron	CG43163 -	chr3L	8486366	intron	CG43163 -	chr3L	8490964	intron	CG43163 -	chr3L_24_8485001	chr3L_8485001	D20-c2
1085	chr3L	8498294	8498330	chr3L	8505762	8505798	blood	14	7468	0.5	3.5	2.0	4.7	7504	chr3L	8498294	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505798	intron	CG43163 -	chr3L_14_8500001	chr3L_8500001	D20-c2
1096	chr3L	9076925	9076959	chr3L	9084486	9084520	412	19	7561	6.5	6.5	6.5	2.5	7595	chr3L	9076925	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084520	exon	Tequila +	chr3L_19_9080001	chr3L_9080001	D20-c2
1098	chr3L	9130556	9130581	chr3L	9134318	9134343	412	12	3762	5.5	5.5	5.5	1.8	3787	chr3L	9130556	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_12_9130001	chr3L_9130001	D20-c2
1099	chr3L	9164694	9164730	chr3L	9166162	9166198	hobo	9	1468	3.0	1.5	2.2	2.8	1504	chr3L	9164694	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_9_9165001	chr3L_9165001	D20-c2
1100	chr3L	9219241	9219275	chr3L	9219914	9219948	jockey	21	673	9.0	6.0	7.5	2.5	707	chr3L	9219241	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219948	intergenic	not near genes	chr3L_21_9215001	chr3L_9215001	D20-c2
1102	chr3L	9270614	9270649	chr3L	9278370	9278405	roo	8	7756	1.5	6.0	3.8	1.7	7791	chr3L	9270614	intron	GluRIB +	chr3L	9274510	intron	GluRIB +	chr3L	9278405	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	D20-c2
1106	chr3L	9526483	9526513	chr3L	9528164	9528194	Doc	9	1681	1.0	0.5	0.8	5.0	1711	chr3L	9526483	intergenic	not near genes	chr3L	9527338	intergenic	not near genes	chr3L	9528194	intergenic	not near genes	chr3L_9_9525001	chr3L_9525001	D20-c2
1123	chr3L	10414941	10414974	chr3L	10417314	10417347	Doc	10	2373	4.0	3.0	3.5	2.2	2406	chr3L	10414941	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_10_10415001	chr3L_10415001	D20-c2
1135	chr3L	11264466	11264493	chr3L	11271419	11271446	17.6	7	6953	3.5	4.5	4.0	1.4	6980	chr3L	11264466	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271446	intergenic	not near genes	chr3L_7_11265001	chr3L_11265001	D20-c2
1141	chr3L	11564790	11564806	chr3L	11572416	11572432	412	7	7626	7.0	9.5	8.2	0.8	7642	chr3L	11564790	exon	CG33267 +	chr3L	11568611	intron	CG33267 +	chr3L	11572432	exon	CG33267 +	chr3L_7_11565001	chr3L_11565001	D20-c2
1145	chr3L	11723084	11723114	chr3L	11727880	11727910	Doc	5	4796	0.0	3.5	1.8	1.8	4826	chr3L	11723084	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	D20-c2
1171	chr3L	12874930	12874963	chr3L	12877223	12877256	jockey	5	2293	0.0	4.5	2.2	1.6	2326	chr3L	12874930	intergenic	not near genes	chr3L	12876093	intergenic	not near genes	chr3L	12877256	intergenic	not near genes	chr3L_5_12875001	chr3L_12875001	D20-c2
1173	chr3L	12919274	12919304	chr3L	12924747	12924778	Rt1c	13	5473	4.5	5.0	4.8	2.2	5504	chr3L	12919274	intergenic	not near genes	chr3L	12922026	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_13_12920001	chr3L_12920001	D20-c2
1174	chr3L	12957787	12957818	chr3L	12962270	12962301	copia	5	4483	4.5	3.0	3.8	1.0	4514	chr3L	12957787	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962301	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	D20-c2
1191	chr3L	13525158	13525185	chr3L	13532955	13532982	roo	9	7797	1.5	2.5	2.0	3.0	7824	chr3L	13525158	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532982	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	D20-c2
1194	chr3L	13804545	13804574	chr3L	13822832	13822861	roo	9	18287	3.5	3.5	3.5	2.0	18316	chr3L	13804545	intergenic	not near genes	chr3L	13813703	intergenic	not near genes	chr3L	13822861	intergenic	not near genes	chr3L_9_13810001	chr3L_13810001	D20-c2
1201	chr3L	14245566	14245591	chr3L	14245661	14245686	1360	7	95	6.0	2.5	4.2	1.3	120	chr3L	14245566	3` UTR	CR44561 -	chr3L	14245626	3` UTR	CR44561 -	chr3L	14245686	3` UTR	CR44561 -	chr3L_7_14245001	chr3L_14245001	D20-c2
1204	chr3L	14295988	14296008	chr3L	14296466	14296495	roo	12	486	7.0	6.5	6.8	1.5	507	chr3L	14295988	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296495	intron	fz +	chr3L_12_14295001	chr3L_14295001	D20-c2
1205	chr3L	14312029	14312036	chr3L	14316843	14316851	X-element	4	4815	5.0	2.5	3.8	0.8	4822	chr3L	14312029	exon	fz +	chr3L	14314440	intron	fz +	chr3L	14316851	intron	fz +	chr3L_4_14310001	chr3L_14310001	D20-c2
1211	chr3L	14468446	14468475	chr3L	14473653	14473682	copia	14	5207	2.5	3.5	3.0	3.5	5236	chr3L	14468446	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473682	intron	bbg -	chr3L_14_14470001	chr3L_14470001	D20-c2
1216	chr3L	14721181	14721208	chr3L	14723025	14723052	Rt1c	11	1843	7.0	6.0	6.5	1.5	1871	chr3L	14721181	intron	ome +	chr3L	14722116	intron	ome +	chr3L	14723052	intron	ome +	chr3L_11_14720001	chr3L_14720001	D20-c2
1225	chr3L	15085054	15085081	chr3L	15086221	15086248	1360	7	1165	3.5	3.0	3.2	1.7	1194	chr3L	15085054	intron	cp309 -	chr3L	15085651	intron	cp309 -	chr3L	15086248	intron	cp309 -	chr3L_7_15085001	chr3L_15085001	D20-c2
1231	chr3L	15295765	15295794	chr3L	15298609	15298638	gypsy5	8	2844	3.5	2.0	2.8	2.1	2873	chr3L	15295765	intergenic	not near genes	chr3L	15297202	intergenic	not near genes	chr3L	15298638	intergenic	Best4 +	chr3L_8_15295001	chr3L_15295001	D20-c2
1237	chr3L	15554923	15554952	chr3L	15556711	15556740	S-element	13	1788	2.0	4.0	3.0	3.2	1817	chr3L	15554923	intron	AGO2 +	chr3L	15555832	intron	AGO2 +	chr3L	15556740	intron	AGO2 +	chr3L_13_15555001	chr3L_15555001	D20-c2
1247	chr3L	15899221	15899261	chr3L	15899789	15899807	jockey	9	565	2.0	4.5	3.2	2.1	586	chr3L	15899221	intergenic	pHCl -	chr3L	15899514	intergenic	pHCl -	chr3L	15899807	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	D20-c2
1248	chr3L	15929220	15929229	chr3L	15938368	15938377	roo	4	9148	0.0	6.0	3.0	1.0	9157	chr3L	15929220	intron	Pka-C3 -	chr3L	15933798	intron	Pka-C3 -	chr3L	15938377	intron	Pka-C3 -	chr3L_4_15930001	chr3L_15930001	D20-c2
1254	chr3L	16184111	16184139	chr3L	16188931	16188959	X-element	10	4820	2.0	5.0	3.5	2.2	4848	chr3L	16184111	intergenic	not near genes	chr3L	16186535	intergenic	not near genes	chr3L	16188959	intergenic	not near genes	chr3L_10_16185001	chr3L_16185001	D20-c2
1258	chr3L	16443846	16443876	chr3L	16446187	16446216	Doc	11	2341	2.5	1.0	1.8	3.9	2370	chr3L	16443846	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445031	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446216	intron,intron	CG33158 +,dsx-c73A -	chr3L_11_16445001	chr3L_16445001	D20-c2
1261	chr3L	16493973	16494012	chr3L	16494491	16494530	jockey	19	517	3.0	3.5	3.2	4.5	557	chr3L	16493973	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_19_16490001	chr3L_16490001	D20-c2
1274	chr3L	16945724	16945759	chr3L	16954878	16954913	roo	11	9154	5.0	5.5	5.2	1.8	9189	chr3L	16945724	exon	Obp73a +	chr3L	16950318	intergenic	not near genes	chr3L	16954913	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	D20-c2
1275	chr3L	17034931	17034965	chr3L	17035120	17035154	G2	5	189	0.5	1.5	1.0	2.5	223	chr3L	17034931	intergenic	not near genes	chr3L	17035042	intergenic	not near genes	chr3L	17035154	intergenic	not near genes	chr3L_5_17035001	chr3L_17035001	D20-c2
1276	chr3L	17085001	17085036	chr3L	17094151	17094186	roo	8	9150	6.5	4.0	5.2	1.3	9185	chr3L	17085001	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094186	intron	Rbp6 -	chr3L_8_17085001	chr3L_17085001	D20-c2
1287	chr3L	17516979	17517010	chr3L	17524538	17524569	412	10	7559	2.0	4.0	3.0	2.5	7590	chr3L	17516979	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524569	3` UTR	CG7564 +	chr3L_10_17520001	chr3L_17520001	D20-c2
1290	chr3L	17730847	17730881	chr3L	17738178	17738212	mdg1	10	7331	2.5	2.0	2.2	3.1	7365	chr3L	17730847	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738212	intron	Ccn +	chr3L_10_17730001	chr3L_17730001	D20-c2
1294	chr3L	17799817	17799832	chr3L	17801605	17801620	S-element	4	1788	3.5	2.0	2.8	1.1	1803	chr3L	17799817	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801620	intron	NUCB1 -	chr3L_4_17800001	chr3L_17800001	D20-c2
1297	chr3L	17918370	17918403	chr3L	17921174	17921207	opus	5	2804	3.0	0.0	1.5	2.0	2837	chr3L	17918370	intergenic	not near genes	chr3L	17919788	intergenic	not near genes	chr3L	17921207	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	D20-c2
1311	chr3L	18506134	18506158	chr3L	18509598	18509622	F-element	6	3464	0.5	1.5	1.0	3.0	3488	chr3L	18506134	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509622	intergenic	not near genes	chr3L_6_18505001	chr3L_18505001	D20-c2
1313	chr3L	18593948	18593976	chr3L	18595929	18595957	Doc	11	1981	2.0	1.0	1.5	4.4	2009	chr3L	18593948	intergenic	term -	chr3L	18594952	intergenic	not near genes	chr3L	18595957	intergenic	CR45389 +	chr3L_11_18590001	chr3L_18590001	D20-c2
1320	chr3L	18772407	18772439	chr3L	18781089	18781121	roo	9	8682	2.5	4.0	3.2	2.1	8714	chr3L	18772407	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_9_18775001	chr3L_18775001	D20-c2
1328	chr3L	19008851	19008865	chr3L	19009189	19009192	jockey	5	336	5.0	6.0	5.5	0.8	341	chr3L	19008851	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009192	intron	nkd -	chr3L_5_19005001	chr3L_19005001	D20-c2
1332	chr3L	19117046	19117074	chr3L	19124494	19124522	mdg1	6	7448	2.0	1.5	1.8	2.1	7476	chr3L	19117046	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_6_19120001	chr3L_19120001	D20-c2
1336	chr3L	19208055	19208092	chr3L	19209430	19209466	Doc	10	1375	2.0	3.5	2.8	2.6	1411	chr3L	19208055	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209466	intron	fz2 -	chr3L_10_19205001	chr3L_19205001	D20-c2
1348	chr3L	19820297	19820311	chr3L	19827847	19827861	412	7	7550	4.0	1.0	2.5	2.0	7564	chr3L	19820297	intron	Deaf1 +	chr3L	19824079	intron	Deaf1 +	chr3L	19827861	intron	Deaf1 +	chr3L_7_19820001	chr3L_19820001	D20-c2
1349	chr3L	19848502	19848535	chr3L	19857693	19857726	roo	6	9191	2.5	1.0	1.8	2.1	9224	chr3L	19848502	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857726	intron	Papss +	chr3L_6_19850001	chr3L_19850001	D20-c2
1350	chr3L	19861820	19861851	chr3L	19863609	19863640	S-element	6	1789	0.5	2.5	1.5	2.4	1820	chr3L	19861820	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863640	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	D20-c2
1356	chr3L	20113656	20113680	chr3L	20122914	20122938	roo	8	9258	2.5	3.5	3.0	2.0	9282	chr3L	20113656	intergenic	not near genes	chr3L	20118297	intergenic	not near genes	chr3L	20122938	intergenic	not near genes	chr3L_8_20115001	chr3L_20115001	D20-c2
1360	chr3L	20257335	20257357	chr3L	20258456	20258478	pogo	8	1121	2.5	3.5	3.0	2.0	1143	chr3L	20257335	intron	rdgC +	chr3L	20257906	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_8_20255001	chr3L_20255001	D20-c2
1364	chr3L	20476755	20476784	chr3L	20484355	20484384	springer	9	7600	2.0	5.5	3.8	1.9	7629	chr3L	20476755	3` UTR	isoQC +	chr3L	20480570	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_9_20480001	chr3L_20480001	D20-c2
1365	chr3L	20487662	20487674	chr3L	20488114	20488126	INE-1	6	452	10.5	2.0	6.2	0.8	464	chr3L	20487662	intron	ZnT77C -	chr3L	20487894	intron	ZnT77C -	chr3L	20488126	intron	ZnT77C -	chr3L_6_20485001	chr3L_20485001	D20-c2
1366	chr3L	20590067	20590097	chr3L	20590607	20590637	412	8	540	0.5	3.5	2.0	2.7	570	chr3L	20590067	intergenic	not near genes	chr3L	20590352	intergenic	not near genes	chr3L	20590637	intergenic	not near genes	chr3L_8_20590001	chr3L_20590001	D20-c2
1368	chr3L	20821296	20821308	chr3L	20824764	20824778	NOF	4	3470	2.5	3.5	3.0	1.0	3482	chr3L	20821296	intron	Pka-R1 +	chr3L	20823037	intron	Pka-R1 +	chr3L	20824778	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	D20-c2
1374	chr3L	21014915	21014948	chr3L	21023397	21023430	Tirant	20	8482	3.5	7.0	5.2	3.2	8515	chr3L	21014915	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023430	intron	skd -	chr3L_20_21015001	chr3L_21015001	D20-c2
1378	chr3L	21151861	21151897	chr3L	21156946	21156982	flea	4	5085	2.5	4.0	3.2	1.0	5121	chr3L	21151861	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156982	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	D20-c2
1383	chr3L	21243746	21243758	chr3L	21251310	21251322	412	6	7564	5.5	2.5	4.0	1.2	7576	chr3L	21243746	intron	Eip78C +	chr3L	21247534	intron	Eip78C +	chr3L	21251322	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	D20-c2
1385	chr3L	21306146	21306180	chr3L	21315306	21315340	roo	6	9160	0.0	2.5	1.2	2.7	9194	chr3L	21306146	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310743	intron	Pc -	chr3L	21315340	3` UTR	Pc -	chr3L_6_21310001	chr3L_21310001	D20-c2
1390	chr3L	21498833	21498870	chr3L	21500470	21500507	1360	8	1636	8.5	12.0	10.2	0.7	1674	chr3L	21498833	intron	Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500507	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	D20-c2
1395	chr3L	22099676	22099704	chr3L	22105863	22105891	3S18	5	6187	9.5	6.0	7.8	0.6	6215	chr3L	22099676	intergenic	not near genes	chr3L	22102784	intergenic	not near genes	chr3L	22105891	intergenic	not near genes	chr3L_5_22100001	chr3L_22100001	D20-c2
1400	chr3L	22555775	22555796	chr3L	22563246	22563267	blood	8	7470	14.0	13.0	13.5	0.6	7492	chr3L	22555775	intergenic	not near genes	chr3L	22559521	intergenic	not near genes	chr3L	22563267	intergenic	not near genes	chr3L_8_22555001	chr3L_22555001	D20-c2
1402	chr3L	22577621	22577646	chr3L	22582410	22582435	Doc	13	4789	5.0	4.5	4.8	2.2	4814	chr3L	22577621	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582435	3` UTR	CG14459 -	chr3L_13_22580001	chr3L_22580001	D20-c2
1403	chr3L	22617188	22617221	chr3L	22624641	22624674	blood	9	7453	13.0	9.0	11.0	0.8	7486	chr3L	22617188	intron	CG14459 -	chr3L	22620931	intron	CG14459 -	chr3L	22624674	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	D20-c2
1406	chr3L	22761392	22761422	chr3L	22766827	22766856	Ivk	7	5435	8.0	3.5	5.8	1.0	5464	chr3L	22761392	intron	SPoCk +	chr3L	22764124	intron	SPoCk +	chr3L	22766856	intron	SPoCk +	chr3L_7_22760001	chr3L_22760001	D20-c2
1412	chr3L	22989860	22989892	chr3L	22996835	22996867	297	12	6975	6.5	8.0	7.2	1.5	7007	chr3L	22989860	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996867	intergenic	not near genes	chr3L_12_22990001	chr3L_22990001	D20-c2
1413	chr3L	23042224	23042258	chr3L	23048978	23049012	gypsy6	5	6754	10.5	9.0	9.8	0.5	6788	chr3L	23042224	intergenic	not near genes	chr3L	23045618	intergenic	not near genes	chr3L	23049012	intergenic	not near genes	chr3L_5_23045001	chr3L_23045001	D20-c2
1416	chr3L	24168789	24168818	chr3L	24176116	24176147	ZAM	9	7327	6.5	6.5	6.5	1.2	7358	chr3L	24168789	intron	Snap25 +	chr3L	24172468	intron	Snap25 +	chr3L	24176147	intron	Snap25 +	chr3L_9_24170001	chr3L_24170001	D20-c2
1427	chr3R	4206083	4206104	chr3R	4211659	4211664	mdg3	4	5572	8.0	4.0	6.0	0.6	5581	chr3R	4206083	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211664	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	D20-c2
1428	chr3R	4366761	4366784	chr3R	4375145	4375168	roo	6	8384	11.0	11.5	11.2	0.5	8407	chr3R	4366761	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375168	5` UTR	CR44922 +	chr3R_6_4370001	chr3R_4370001	D20-c2
1431	chr3R	4887481	4887509	chr3R	4894859	4894887	rover	11	7378	6.0	5.5	5.8	1.6	7406	chr3R	4887481	intergenic	not near genes	chr3R	4891184	intergenic	not near genes	chr3R	4894887	intergenic	not near genes	chr3R_11_4890001	chr3R_4890001	D20-c2
1432	chr3R	5045842	5045878	chr3R	5052945	5052981	HMS-Beagle	19	7103	5.5	6.0	5.8	2.8	7139	chr3R	5045842	intron	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5052981	intergenic	CR45588 -	chr3R_19_5045001	chr3R_5045001	D20-c2
1434	chr3R	5746016	5746046	chr3R	5746258	5746288	pogo	10	242	4.5	3.0	3.8	2.1	272	chr3R	5746016	3` UTR	Madm +	chr3R	5746152	3` UTR	Madm +	chr3R	5746288	3` UTR	Madm +	chr3R_10_5745001	chr3R_5745001	D20-c2
1435	chr3R	5747010	5747048	chr3R	5753202	5753240	diver	7	6192	1.0	1.0	1.0	3.5	6230	chr3R	5747010	intergenic	Madm +	chr3R	5750125	intergenic	not near genes	chr3R	5753240	intergenic	CG2091 -	chr3R_7_5750001	chr3R_5750001	D20-c2
1436	chr3R	5809112	5809143	chr3R	5809354	5809385	pogo	10	242	4.5	2.0	3.2	2.4	273	chr3R	5809112	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809385	3` UTR	CG11000 +	chr3R_10_5805001	chr3R_5805001	D20-c2
1437	chr3R	5822380	5822413	chr3R	5823548	5823581	1360	12	1168	4.0	5.0	4.5	2.2	1201	chr3R	5822380	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823581	3` UTR	CG2023 -	chr3R_12_5820001	chr3R_5820001	D20-c2
1441	chr3R	5927560	5927591	chr3R	5927801	5927832	pogo	14	240	3.0	2.0	2.5	4.0	272	chr3R	5927560	intron	CG34113 -	chr3R	5927696	intron	CG34113 -	chr3R	5927832	intron	CG34113 -	chr3R_14_5925001	chr3R_5925001	D20-c2
1446	chr3R	6015967	6015994	chr3R	6024449	6024476	Tirant	13	8482	4.0	4.0	4.0	2.6	8509	chr3R	6015967	intergenic	not near genes	chr3R	6020222	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_13_6020001	chr3R_6020001	D20-c2
1449	chr3R	6121179	6121184	chr3R	6121398	6121403	BS	4	219	0.0	5.0	2.5	1.1	224	chr3R	6121179	intergenic	not near genes	chr3R	6121291	intergenic	not near genes	chr3R	6121403	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	D20-c2
1450	chr3R	6158506	6158539	chr3R	6167090	6167117	Tirant	8	8582	4.0	2.0	3.0	2.0	8611	chr3R	6158506	intergenic	not near genes	chr3R	6162812	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	D20-c2
1451	chr3R	6175171	6175206	chr3R	6182444	6182479	HMS-Beagle2	7	7272	1.5	2.5	2.0	2.3	7308	chr3R	6175171	intergenic	Osi1 +	chr3R	6178825	intron	CR45194 +	chr3R	6182479	intergenic	CR45194 +	chr3R_7_6175001	chr3R_6175001	D20-c2
1454	chr3R	6206289	6206315	chr3R	6206507	6206533	BS	14	218	7.0	5.5	6.2	1.9	244	chr3R	6206289	exon	Osi24 +	chr3R	6206411	intron	Osi24 +	chr3R	6206533	intron	Osi24 +	chr3R_14_6205001	chr3R_6205001	D20-c2
1457	chr3R	6510025	6510055	chr3R	6515107	6515137	jockey	5	5082	2.0	2.0	2.0	1.7	5112	chr3R	6510025	intergenic	not near genes	chr3R	6512581	intergenic	not near genes	chr3R	6515137	intergenic	not near genes	chr3R_5_6510001	chr3R_6510001	D20-c2
1459	chr3R	6737496	6737524	chr3R	6739284	6739312	Doc	9	1788	4.0	3.5	3.8	1.9	1816	chr3R	6737496	intron	pb -	chr3R	6738404	intron	pb -	chr3R	6739312	intron	pb -	chr3R_9_6735001	chr3R_6735001	D20-c2
1479	chr3R	7694575	7694587	chr3R	7713637	7713649	invader3	5	19062	2.5	3.0	2.8	1.3	19074	chr3R	7694575	3` UTR	Nlg1 +	chr3R	7704112	intergenic	not near genes	chr3R	7713649	intergenic	not near genes	chr3R_5_7700001	chr3R_7700001	D20-c2
1480	chr3R	7729469	7729495	chr3R	7737408	7737434	Stalker2	7	7939	5.5	5.5	5.5	1.1	7965	chr3R	7729469	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737434	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	D20-c2
1481	chr3R	7849640	7849669	chr3R	7850808	7850837	1360	7	1168	1.0	4.5	2.8	1.8	1197	chr3R	7849640	intron	CG34384 +	chr3R	7850238	intron	CG34384 +	chr3R	7850837	intron	CG34384 +	chr3R_7_7850001	chr3R_7850001	D20-c2
1486	chr3R	7973313	7973346	chr3R	7974376	7974410	1360	7	1064	0.0	0.5	0.2	5.8	1097	chr3R	7973313	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974410	3` UTR	CD98hc -	chr3R_7_7970001	chr3R_7970001	D20-c2
1490	chr3R	8094406	8094421	chr3R	8099712	8099727	Transpac	5	5306	6.0	1.5	3.8	1.0	5321	chr3R	8094406	intron	CG7900 +	chr3R	8097066	intron	CG7900 +	chr3R	8099727	intron	CG7900 +	chr3R_5_8095001	chr3R_8095001	D20-c2
1491	chr3R	8101761	8101789	chr3R	8104846	8104874	G2	8	3085	3.5	2.5	3.0	2.0	3113	chr3R	8101761	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104874	3` UTR	CG7900 +	chr3R_8_8100001	chr3R_8100001	D20-c2
1493	chr3R	8207556	8207579	chr3R	8208402	8208425	F-element	14	846	2.0	4.5	3.2	3.3	869	chr3R	8207556	intergenic	not near genes	chr3R	8207990	intergenic	not near genes	chr3R	8208425	intergenic	not near genes	chr3R_14_8205001	chr3R_8205001	D20-c2
1497	chr3R	8403004	8403041	chr3R	8412171	8412208	roo	14	9167	4.5	5.5	5.0	2.3	9204	chr3R	8403004	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412208	intron	CG45263 -	chr3R_14_8405001	chr3R_8405001	D20-c2
1501	chr3R	8570477	8570506	chr3R	8575114	8575143	HMS-Beagle	6	4637	1.0	3.0	2.0	2.0	4666	chr3R	8570477	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575143	intergenic	not near genes	chr3R_6_8570001	chr3R_8570001	D20-c2
1503	chr3R	8601769	8601789	chr3R	8610923	8610943	roo	6	9154	6.0	3.0	4.5	1.1	9174	chr3R	8601769	intron	5-HT2B +	chr3R	8606356	intron	5-HT2B +	chr3R	8610943	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	D20-c2
1504	chr3R	8707355	8707385	chr3R	8709797	8709827	jockey	16	2442	4.5	5.0	4.8	2.8	2472	chr3R	8707355	intergenic	not near genes	chr3R	8708591	intergenic	not near genes	chr3R	8709827	intergenic	not near genes	chr3R_16_8705001	chr3R_8705001	D20-c2
1515	chr3R	9278777	9278810	chr3R	9284038	9284071	Rt1a	19	5260	3.5	6.0	4.8	3.3	5294	chr3R	9278777	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284071	intergenic	not near genes	chr3R_19_9280001	chr3R_9280001	D20-c2
1516	chr3R	9304529	9304535	chr3R	9311817	9311823	Stalker4	4	7288	9.0	2.0	5.5	0.6	7294	chr3R	9304529	intron	CG8861 -	chr3R	9308176	intron	CG8861 -	chr3R	9311823	intron	CG8861 -	chr3R_4_9305001	chr3R_9305001	D20-c2
1517	chr3R	9319575	9319606	chr3R	9320011	9320042	jockey	12	436	2.0	4.0	3.0	3.0	467	chr3R	9319575	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320042	intron	CG8861 -	chr3R_12_9315001	chr3R_9315001	D20-c2
1518	chr3R	9361828	9361841	chr3R	9362070	9362083	pogo	6	242	1.0	6.5	3.8	1.2	255	chr3R	9361828	3` UTR	CG45050 +	chr3R	9361956	3` UTR	CG45050 +	chr3R	9362083	3` UTR	CG45050 +	chr3R_6_9360001	chr3R_9360001	D20-c2
1524	chr3R	9699972	9700002	chr3R	9700062	9700092	1360	16	90	4.5	4.5	4.5	2.9	120	chr3R	9699972	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700092	intron	Unc-115a -	chr3R_16_9700001	chr3R_9700001	D20-c2
1529	chr3R	10231779	10231807	chr3R	10237357	10237385	mdg3	9	5578	4.0	5.5	4.8	1.6	5606	chr3R	10231779	intron	CG42795 +	chr3R	10234582	intron	CG42795 +	chr3R	10237385	intron	CG42795 +	chr3R_9_10230001	chr3R_10230001	D20-c2
1538	chr3R	10804170	10804202	chr3R	10811703	10811735	17.6	10	7533	2.5	1.0	1.8	3.6	7565	chr3R	10804170	intergenic	CG14692 -	chr3R	10807952	intergenic	not near genes	chr3R	10811735	3` UTR	CG14693 -	chr3R_10_10805001	chr3R_10805001	D20-c2
1549	chr3R	11379240	11379269	chr3R	11388396	11388425	roo	8	9156	2.5	9.0	5.8	1.2	9185	chr3R	11379240	intron	pros +	chr3R	11383832	intron	pros +	chr3R	11388425	intron	pros +	chr3R_8_11380001	chr3R_11380001	D20-c2
1556	chr3R	11841058	11841094	chr3R	11846250	11846278	BS	18	5192	4.5	4.0	4.2	3.5	5220	chr3R	11841058	intron	CG6959 -	chr3R	11843668	intron	CG6959 -	chr3R	11846278	intron	CG6959 -	chr3R_18_11840001	chr3R_11840001	D20-c2
1559	chr3R	12022883	12022916	chr3R	12025061	12025094	pogo	13	2178	2.0	4.0	3.0	3.2	2211	chr3R	12022883	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025094	intergenic	not near genes	chr3R_13_12020001	chr3R_12020001	D20-c2
1582	chr3R	12920150	12920186	chr3R	12925354	12925390	copia	19	5204	4.5	3.0	3.8	4.0	5240	chr3R	12920150	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925390	intron	beat-Vb +	chr3R_19_12920001	chr3R_12920001	D20-c2
1587	chr3R	13135826	13135854	chr3R	13138002	13138030	pogo	9	2176	5.5	2.5	4.0	1.8	2204	chr3R	13135826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138030	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13135001	chr3R_13135001	D20-c2
1588	chr3R	13143046	13143063	chr3R	13148615	13148626	mdg3	5	5569	4.0	7.5	5.8	0.7	5580	chr3R	13143046	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148626	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	D20-c2
1592	chr3R	13314105	13314119	chr3R	13318894	13318908	Doc	7	4789	3.5	6.0	4.8	1.2	4803	chr3R	13314105	intergenic	not near genes	chr3R	13316506	intergenic	not near genes	chr3R	13318908	intergenic	CG45080 -	chr3R_7_13315001	chr3R_13315001	D20-c2
1611	chr3R	14021647	14021679	chr3R	14023465	14023497	S-element	13	1817	2.5	2.0	2.2	4.1	1850	chr3R	14021647	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023497	intron	rdx -	chr3R_13_14020001	chr3R_14020001	D20-c2
1615	chr3R	14180811	14180835	chr3R	14185577	14185601	F-element	6	4766	4.0	4.5	4.2	1.2	4790	chr3R	14180811	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185601	intron	Dop1R1 -	chr3R_6_14180001	chr3R_14180001	D20-c2
1616	chr3R	14246389	14246418	chr3R	14247886	14247915	jockey	13	1496	6.0	3.5	4.8	2.2	1526	chr3R	14246389	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247915	intergenic	not near genes	chr3R_13_14245001	chr3R_14245001	D20-c2
1635	chr3R	15041400	15041419	chr3R	15045185	15045204	Doc	9	3785	0.0	1.0	0.5	6.0	3804	chr3R	15041400	intergenic	not near genes	chr3R	15043302	intergenic	not near genes	chr3R	15045204	intergenic	not near genes	chr3R_9_15040001	chr3R_15040001	D20-c2
1636	chr3R	15059277	15059480	chr3R	15059472	15059568	BS	7	103	0.0	0.0	0.0	7.0	291	chr3R	15059277	intron	dpr9 -	chr3R	15059422	intron	dpr9 -	chr3R	15059568	intron	dpr9 -	chr3R_7_15055001	chr3R_15055001	D20-c2
1638	chr3R	15079805	15079838	chr3R	15080047	15080080	pogo	6	242	2.5	1.5	2.0	2.0	275	chr3R	15079805	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080080	3` UTR	CG6966 -	chr3R_6_15075001	chr3R_15075001	D20-c2
1641	chr3R	15102495	15102529	chr3R	15109753	15109785	412	8	7257	1.5	1.5	1.5	3.2	7290	chr3R	15102495	intron	CG42788 -	chr3R	15106140	intron	CG42788 -	chr3R	15109785	intron	CG42788 -	chr3R_8_15105001	chr3R_15105001	D20-c2
1642	chr3R	15132058	15132080	chr3R	15135119	15135141	Juan	16	3061	11.5	14.0	12.8	1.2	3083	chr3R	15132058	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_16_15130001	chr3R_15130001	D20-c2
1645	chr3R	15162547	15162563	chr3R	15167316	15167332	F-element	5	4769	6.0	0.5	3.2	1.2	4785	chr3R	15162547	intron	Gyc88E +	chr3R	15164940	intron	Gyc88E +	chr3R	15167332	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	D20-c2
1650	chr3R	15601162	15601196	chr3R	15608685	15608719	412	13	7523	3.0	3.0	3.0	3.2	7557	chr3R	15601162	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608719	intergenic	not near genes	chr3R_13_15600001	chr3R_15600001	D20-c2
1651	chr3R	15618748	15618763	chr3R	15626223	15626238	blood	8	7475	2.0	3.0	2.5	2.3	7490	chr3R	15618748	intergenic	not near genes	chr3R	15622493	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_8_15620001	chr3R_15620001	D20-c2
1657	chr3R	16756319	16756351	chr3R	16762511	16762543	diver	16	6191	4.0	0.5	2.2	5.0	6224	chr3R	16756319	intron	bxd -	chr3R	16759431	intron	bxd -	chr3R	16762543	intron	bxd -	chr3R_16_16755001	chr3R_16755001	D20-c2
1659	chr3R	17294667	17294693	chr3R	17295096	17295122	BS	11	429	2.5	6.0	4.2	2.1	455	chr3R	17294667	intergenic	not near genes	chr3R	17294894	intergenic	not near genes	chr3R	17295122	intergenic	not near genes	chr3R_11_17290001	chr3R_17290001	D20-c2
1669	chr3R	17591300	17591322	chr3R	17591731	17591759	F-element	12	436	3.0	5.0	4.0	2.4	459	chr3R	17591300	intergenic	not near genes	chr3R	17591530	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_12_17590001	chr3R_17590001	D20-c2
1674	chr3R	17763161	17763165	chr3R	17763648	17763652	roo	4	486	7.5	3.5	5.5	0.6	491	chr3R	17763161	5` UTR	TyrR -	chr3R	17763406	intergenic	TyrR -	chr3R	17763652	intergenic	TyrR -	chr3R_4_17760001	chr3R_17760001	D20-c2
1676	chr3R	17925853	17925889	chr3R	17927321	17927356	hobo	14	1468	5.5	4.0	4.8	2.4	1503	chr3R	17925853	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_14_17925001	chr3R_17925001	D20-c2
1678	chr3R	18032791	18032803	chr3R	18040465	18040477	opus	5	7674	0.0	4.0	2.0	1.7	7686	chr3R	18032791	intergenic	not near genes	chr3R	18036634	intergenic	not near genes	chr3R	18040477	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	D20-c2
1686	chr3R	18606504	18606532	chr3R	18610737	18610765	F-element	5	4233	3.0	4.0	3.5	1.1	4261	chr3R	18606504	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610765	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	D20-c2
1693	chr3R	19193003	19193009	chr3R	19197301	19197314	F-element	5	4304	2.5	6.0	4.2	1.0	4311	chr3R	19193003	intron	CG31475 +	chr3R	19195158	intron	CG31475 +	chr3R	19197314	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	D20-c2
1708	chr3R	20156693	20156721	chr3R	20165864	20165892	roo	4	9171	1.5	4.5	3.0	1.0	9199	chr3R	20156693	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165892	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	D20-c2
1709	chr3R	20330996	20331030	chr3R	20331483	20331517	roo	12	487	2.0	4.0	3.0	3.0	521	chr3R	20330996	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331517	intergenic	not near genes	chr3R_12_20330001	chr3R_20330001	D20-c2
1717	chr3R	20854470	20854514	chr3R	20859266	20859305	Doc	8	4793	1.0	3.0	2.0	2.7	4835	chr3R	20854470	intron	Ir93a -	chr3R	20856888	intron	Ir93a -	chr3R	20859305	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	D20-c2
1724	chr3R	21141673	21141701	chr3R	21150155	21150183	Tirant	17	8481	4.5	8.0	6.2	2.4	8510	chr3R	21141673	intron	SNF4Agamma +	chr3R	21145928	intron	SNF4Agamma +	chr3R	21150183	intron	SNF4Agamma +	chr3R_17_21145001	chr3R_21145001	D20-c2
1736	chr3R	21761118	21761154	chr3R	21768511	21768547	mdg1	20	7392	3.5	6.0	4.8	3.4	7429	chr3R	21761118	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768547	exon	CG42335 +	chr3R_20_21760001	chr3R_21760001	D20-c2
1749	chr3R	22234689	22234714	chr3R	22236009	22236034	pogo	6	1319	3.5	3.0	3.2	1.4	1345	chr3R	22234689	intron	SKIP +	chr3R	22235362	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_6_22235001	chr3R_22235001	D20-c2
1750	chr3R	22239493	22239502	chr3R	22248554	22248563	roo	6	9061	7.5	0.0	3.8	1.2	9070	chr3R	22239493	intron	SKIP +	chr3R	22244028	intron	SKIP +	chr3R	22248563	intron	SKIP +	chr3R_6_22240001	chr3R_22240001	D20-c2
1754	chr3R	22450552	22450573	chr3R	22453193	22453214	NOF	5	2641	2.0	3.5	2.8	1.3	2662	chr3R	22450552	intron	CG34376 +	chr3R	22451883	intron	CG34376 +	chr3R	22453214	intron	CG34376 +	chr3R_5_22450001	chr3R_22450001	D20-c2
1764	chr3R	22881203	22881219	chr3R	22884910	22884926	Doc	5	3707	2.5	1.5	2.0	1.7	3723	chr3R	22881203	intergenic	not near genes	chr3R	22883064	intergenic	not near genes	chr3R	22884926	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	D20-c2
1774	chr3R	23558406	23558419	chr3R	23560188	23560201	Bari1	5	1782	5.5	7.5	6.5	0.7	1795	chr3R	23558406	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560201	intron	beat-IV +	chr3R_5_23555001	chr3R_23555001	D20-c2
1776	chr3R	23684694	23684730	chr3R	23685181	23685182	roo	20	484	6.0	8.5	7.2	2.4	488	chr3R	23684694	exon	CG18754 +	chr3R	23684938	intron	CG18754 +	chr3R	23685182	exon	CG18754 +	chr3R_20_23680001	chr3R_23680001	D20-c2
1778	chr3R	23835402	23835423	chr3R	23844553	23844574	roo	9	9151	5.0	0.0	2.5	2.6	9172	chr3R	23835402	intron	CG34355 +	chr3R	23839988	intron	CG34355 +	chr3R	23844574	intron	CG34355 +	chr3R_9_23835001	chr3R_23835001	D20-c2
1783	chr3R	24072082	24072112	chr3R	24072521	24072524	jockey	15	437	7.5	0.0	3.8	3.1	442	chr3R	24072082	intron	4EHP -	chr3R	24072303	intron	4EHP -	chr3R	24072524	intron	4EHP -	chr3R_15_24070001	chr3R_24070001	D20-c2
1784	chr3R	24076913	24076920	chr3R	24078381	24078388	hobo	5	1468	13.5	6.0	9.8	0.5	1475	chr3R	24076913	intron	4EHP -	chr3R	24077650	intron	4EHP -	chr3R	24078388	intron	4EHP -	chr3R_5_24075001	chr3R_24075001	D20-c2
1785	chr3R	24076925	24076945	chr3R	24078379	24078413	hobo	7	1466	6.0	5.5	5.8	1.0	1488	chr3R	24076925	intron	4EHP -	chr3R	24077669	intron	4EHP -	chr3R	24078413	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	D20-c2
1793	chr3R	24730089	24730119	chr3R	24732468	24732498	Doc	8	2376	0.5	1.0	0.8	4.4	2409	chr3R	24730089	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732498	intron	tok +	chr3R_8_24730001	chr3R_24730001	D20-c2
1799	chr3R	24927126	24927154	chr3R	24931917	24931946	Doc	12	4792	5.0	4.5	4.8	2.1	4820	chr3R	24927126	intergenic	Trf4-2 +	chr3R	24929536	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_12_24925001	chr3R_24925001	D20-c2
1813	chr3R	25725836	25725862	chr3R	25734997	25735023	roo	5	9161	1.0	5.5	3.2	1.2	9187	chr3R	25725836	intron	LpR2 -	chr3R	25730430	intron	LpR2 -	chr3R	25735023	intron	LpR2 -	chr3R_5_25730001	chr3R_25730001	D20-c2
1815	chr3R	25832693	25832724	chr3R	25841876	25841907	roo	13	9183	5.0	5.5	5.2	2.1	9214	chr3R	25832693	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841907	exon	alpha4GT2 +	chr3R_13_25835001	chr3R_25835001	D20-c2
1822	chr3R	26108825	26108840	chr3R	26117408	26117424	Tirant	8	8584	4.0	0.5	2.2	2.5	8599	chr3R	26108825	5` UTR	CG31324 +	chr3R	26113124	intron	CG31324 +	chr3R	26117424	intron	CG31324 +	chr3R_8_26110001	chr3R_26110001	D20-c2
1826	chr3R	26376323	26376356	chr3R	26385484	26385517	roo	10	9161	4.5	0.5	2.5	2.9	9194	chr3R	26376323	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385517	intergenic	not near genes	chr3R_10_26380001	chr3R_26380001	D20-c2
1829	chr3R	26510520	26510534	chr3R	26519576	26519590	roo	4	9056	2.0	2.0	2.0	1.3	9070	chr3R	26510520	intron	plum -	chr3R	26515055	intron	plum -	chr3R	26519590	intron,5` UTR	plum -,CR45226 +	chr3R_4_26515001	chr3R_26515001	D20-c2
1831	chr3R	26558323	26558359	chr3R	26565637	26565672	Stalker4	10	7312	2.5	5.0	3.8	2.1	7349	chr3R	26558323	intron	scrib +	chr3R	26561998	intron	scrib +	chr3R	26565672	intron	scrib +	chr3R_10_26560001	chr3R_26560001	D20-c2
1834	chr3R	26642733	26642761	chr3R	26643127	26643155	jockey	9	394	3.0	4.5	3.8	1.9	422	chr3R	26642733	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643155	intergenic	not near genes	chr3R_9_26640001	chr3R_26640001	D20-c2
1837	chr3R	26810552	26810579	chr3R	26811038	26811065	roo	8	486	4.5	5.5	5.0	1.3	513	chr3R	26810552	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811065	intron	Tl +	chr3R_8_26810001	chr3R_26810001	D20-c2
1842	chr3R	27007404	27007434	chr3R	27016540	27016570	roo	9	9136	3.0	3.5	3.2	2.1	9166	chr3R	27007404	intron	RYa-R +	chr3R	27011987	intron	RYa-R +	chr3R	27016570	intron	RYa-R +	chr3R_9_27010001	chr3R_27010001	D20-c2
1846	chr3R	27140519	27140542	chr3R	27148130	27148153	412	12	7611	5.0	4.5	4.8	2.1	7634	chr3R	27140519	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148153	intron	CG6051 -	chr3R_12_27140001	chr3R_27140001	D20-c2
1849	chr3R	27342791	27342819	chr3R	27351372	27351401	Tirant	11	8582	3.5	1.5	2.5	3.1	8610	chr3R	27342791	intron	CG42534 +	chr3R	27347096	intron	CG42534 +	chr3R	27351401	intron	CG42534 +	chr3R_11_27345001	chr3R_27345001	D20-c2
1854	chr3R	27521155	27521184	chr3R	27530365	27530394	roo	5	9210	1.0	1.0	1.0	2.5	9239	chr3R	27521155	intron	CG12885 +	chr3R	27525774	intron	CG12885 +	chr3R	27530394	intron	CG12885 +	chr3R_5_27525001	chr3R_27525001	D20-c2
1859	chr3R	27725566	27725596	chr3R	27731009	27731039	I-element	13	5443	3.0	4.0	3.5	2.9	5473	chr3R	27725566	intergenic	not near genes	chr3R	27728302	intergenic	not near genes	chr3R	27731039	intergenic	not near genes	chr3R_13_27725001	chr3R_27725001	D20-c2
1862	chr3R	27856756	27856787	chr3R	27858240	27858271	hopper2	13	1484	6.5	3.0	4.8	2.2	1515	chr3R	27856756	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858271	intron	CG34353 -	chr3R_13_27855001	chr3R_27855001	D20-c2
1863	chr3R	27862961	27862979	chr3R	27868267	27868285	Transpac	5	5306	3.5	2.5	3.0	1.2	5324	chr3R	27862961	intron	CG34353 -	chr3R	27865623	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	D20-c2
1864	chr3R	27875697	27875727	chr3R	27882753	27882783	297	7	7056	4.0	4.0	4.0	1.4	7086	chr3R	27875697	intron	CG34353 -	chr3R	27879240	intron	CG34353 -	chr3R	27882783	intron	CG34353 -	chr3R_7_27875001	chr3R_27875001	D20-c2
1867	chr3R	28068490	28068527	chr3R	28073933	28073970	I-element	8	5442	1.0	3.5	2.2	2.5	5480	chr3R	28068490	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073970	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	D20-c2
1868	chr3R	28173672	28173704	chr3R	28181103	28181135	mdg1	9	7430	0.0	1.0	0.5	6.0	7463	chr3R	28173672	intron	CG34354 +	chr3R	28177404	intron	CG34354 +	chr3R	28181135	intron	CG34354 +	chr3R_9_28175001	chr3R_28175001	D20-c2
1869	chr3R	28253340	28253369	chr3R	28255851	28255880	jockey	11	2511	5.0	3.5	4.2	2.1	2540	chr3R	28253340	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255880	intergenic	not near genes	chr3R_11_28250001	chr3R_28250001	D20-c2
1870	chr3R	28302100	28302128	chr3R	28302540	28302568	jockey	15	439	4.5	2.5	3.5	3.3	468	chr3R	28302100	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302568	intergenic	not near genes	chr3R_15_28300001	chr3R_28300001	D20-c2
1883	chr3R	28758284	28758297	chr3R	28763902	28763915	roo	7	5618	7.5	0.0	3.8	1.5	5631	chr3R	28758284	intergenic	aqrs -	chr3R	28761100	intergenic	not near genes	chr3R	28763915	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	D20-c2
1884	chr3R	28763903	28763918	chr3R	28771347	28771362	Stalker4	4	7444	0.0	1.0	0.5	2.7	7459	chr3R	28763903	intergenic	not near genes	chr3R	28767632	intergenic	not near genes	chr3R	28771362	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	D20-c2
1885	chr3R	28792875	28792904	chr3R	28797967	28798000	jockey	8	5096	5.0	4.0	4.5	1.5	5125	chr3R	28792875	intergenic	not near genes	chr3R	28795438	intergenic	not near genes	chr3R	28798000	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	D20-c2
1892	chr3R	29079377	29079410	chr3R	29080750	29080783	NOF	18	1372	3.5	3.5	3.5	4.0	1406	chr3R	29079377	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080783	intron	CG11873 +	chr3R_18_29080001	chr3R_29080001	D20-c2
1899	chr3R	29319831	29319859	chr3R	29320151	29320179	jockey	11	320	0.0	3.0	1.5	4.4	348	chr3R	29319831	intergenic	Cnx99A -	chr3R	29320005	intergenic	Cnx99A -	chr3R	29320179	intergenic	not near genes	chr3R_11_29320001	chr3R_29320001	D20-c2
1901	chr3R	29406612	29406645	chr3R	29407899	29407932	jockey	15	1286	4.5	3.5	4.0	3.0	1320	chr3R	29406612	intron	Ptp99A +	chr3R	29407272	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_15_29405001	chr3R_29405001	D20-c2
1910	chr3R	29738264	29738301	chr3R	29739732	29739769	hobo	5	1468	3.0	2.5	2.8	1.3	1505	chr3R	29738264	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739769	5` UTR	CG1969 +	chr3R_5_29735001	chr3R_29735001	D20-c2
1912	chr3R	29760359	29760389	chr3R	29761561	29761591	pogo	4	1202	1.5	2.0	1.8	1.4	1232	chr3R	29760359	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761591	intergenic	not near genes	chr3R_4_29760001	chr3R_29760001	D20-c2
1914	chr3R	29882018	29882053	chr3R	29891176	29891211	roo	14	9158	4.0	3.5	3.8	2.9	9193	chr3R	29882018	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891211	intron	CG31038 +	chr3R_14_29885001	chr3R_29885001	D20-c2
1920	chr3R	30084848	30084881	chr3R	30086314	30086349	hobo	10	1467	0.5	2.5	1.5	4.0	1501	chr3R	30084848	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086349	intron	sima +	chr3R_10_30085001	chr3R_30085001	D20-c2
1924	chr3R	30238766	30238775	chr3R	30239931	30239940	1360	4	1165	3.5	0.0	1.8	1.4	1174	chr3R	30238766	intergenic	not near genes	chr3R	30239353	intergenic	not near genes	chr3R	30239940	intergenic	not near genes	chr3R_4_30235001	chr3R_30235001	D20-c2
1927	chr3R	30396219	30396245	chr3R	30404486	30404512	roo	10	8267	2.5	8.5	5.5	1.5	8293	chr3R	30396219	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_10_30400001	chr3R_30400001	D20-c2
1930	chr3R	30480472	30480510	chr3R	30482940	30482979	jockey	17	2469	4.0	5.0	4.5	3.1	2507	chr3R	30480472	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482979	intron	PH4alphaEFB +	chr3R_17_30480001	chr3R_30480001	D20-c2
1935	chr3R	30679517	30679547	chr3R	30686987	30687017	blood	9	7470	4.0	3.5	3.8	1.9	7500	chr3R	30679517	intergenic	not near genes	chr3R	30683267	intergenic	not near genes	chr3R	30687017	intergenic	not near genes	chr3R_9_30680001	chr3R_30680001	D20-c2
1938	chr3R	30818807	30818844	chr3R	30820373	30820410	1360	10	1566	1.5	3.5	2.5	2.9	1603	chr3R	30818807	intron	cindr +	chr3R	30819608	intron	cindr +	chr3R	30820410	intron	cindr +	chr3R_10_30815001	chr3R_30815001	D20-c2
1944	chr3R	31074234	31074245	chr3R	31081833	31081844	springer	6	7599	3.0	0.0	1.5	2.4	7610	chr3R	31074234	intron	Sox100B +	chr3R	31078039	intron	Sox100B +	chr3R	31081844	intron	Sox100B +	chr3R_6_31075001	chr3R_31075001	D20-c2
1951	chr3R	31279370	31279403	chr3R	31285562	31285595	diver	7	6192	6.5	4.0	5.2	1.1	6225	chr3R	31279370	intergenic	not near genes	chr3R	31282482	intergenic	not near genes	chr3R	31285595	intergenic	not near genes	chr3R_7_31280001	chr3R_31280001	D20-c2
1953	chr3R	31413092	31413108	chr3R	31418288	31418309	copia	6	5200	2.5	0.5	1.5	2.4	5217	chr3R	31413092	intron	Gprk2 +	chr3R	31415700	intron	Gprk2 +	chr3R	31418309	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	D20-c2
1963	chr3R	31691529	31691563	chr3R	31696296	31696330	Doc	12	4767	2.0	8.0	5.0	2.0	4801	chr3R	31691529	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696330	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	D20-c2
1971	chr3R	31997989	31998018	chr3R	32005460	32005489	blood	6	7471	3.0	3.0	3.0	1.5	7500	chr3R	31997989	intron	heph -	chr3R	32001739	intron	heph -	chr3R	32005489	intron	heph -	chr3R_6_32000001	chr3R_32000001	D20-c2
1974	chr4	76497	76516	chr4	81941	81960	I-element	4	5444	1.5	1.0	1.2	1.8	5463	chr4	76497	intron	pan +	chr4	79228	intron	pan +	chr4	81960	intron	pan +	chr4_4_75001	chr4_75001	D20-c2
1975	chr4	671605	671635	chr4	680189	680219	Tirant	5	8582	2.0	2.0	2.0	1.7	8614	chr4	671605	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_5_675001	chr4_675001	D20-c2
1976	chrX	827601	827627	chrX	835394	835420	roo	6	7793	0.5	1.5	1.0	3.0	7819	chrX	827601	intron	CG43867 -	chrX	831510	intron	CG43867 -	chrX	835420	intron	CG43867 -	chrX_6_830001	chrX_830001	D20-c2
1977	chrX	906702	906726	chrX	908491	908516	S-element	8	1790	6.0	7.5	6.8	1.0	1814	chrX	906702	intron	CG43867 -	chrX	907609	intron	CG43867 -	chrX	908516	intron	CG43867 -	chrX_8_905001	chrX_905001	D20-c2
1981	chrX	1627975	1628001	chrX	1635443	1635470	gtwin	8	7469	0.5	5.0	2.8	2.1	7495	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631722	intron,intron	Mur2B -,br +	chrX	1635470	intron,intron	Mur2B -,br +	chrX_8_1630001	chrX_1630001	D20-c2
1982	chrX	2399839	2399867	chrX	2408193	2408221	roo	11	8354	7.0	3.5	5.2	1.8	8382	chrX	2399839	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408221	intergenic	not near genes	chrX_11_2400001	chrX_2400001	D20-c2
1984	chrX	2664387	2664418	chrX	2665534	2665565	1360	8	1147	1.0	4.5	2.8	2.1	1178	chrX	2664387	intron	sgg +	chrX	2664976	intron	sgg +	chrX	2665565	intron	sgg +	chrX_8_2660001	chrX_2660001	D20-c2
1987	chrX	3415027	3415047	chrX	3421213	3421233	3S18	5	6186	2.0	2.5	2.2	1.6	6206	chrX	3415027	intron,intron	CR44999 +,CG12535 -	chrX	3418130	intron,intron	CR44999 +,CG12535 -	chrX	3421233	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	D20-c2
1989	chrX	3493088	3493123	chrX	3502248	3502283	roo	4	9160	1.0	1.0	1.0	2.0	9195	chrX	3493088	intron,intron	CR44999 +,Gas8 -	chrX	3497686	intron,intron	CR44999 +,Gas8 -	chrX	3502283	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	D20-c2
1994	chrX	3986860	3986876	chrX	3994494	3994506	412	5	7633	3.5	1.0	2.2	1.6	7646	chrX	3986860	intergenic	not near genes	chrX	3990683	intergenic	not near genes	chrX	3994506	intergenic	not near genes	chrX_5_3990001	chrX_3990001	D20-c2
2001	chrX	4827976	4827984	chrX	4835348	4835356	Stalker4	4	7372	4.0	1.5	2.8	1.1	7380	chrX	4827976	intergenic	not near genes	chrX	4831666	intergenic	not near genes	chrX	4835356	intergenic	not near genes	chrX_4_4830001	chrX_4830001	D20-c2
2002	chrX	4827988	4827999	chrX	4835344	4835371	Stalker4	7	7368	3.0	0.5	1.8	2.5	7383	chrX	4827988	intergenic	not near genes	chrX	4831680	intergenic	not near genes	chrX	4835371	intergenic	not near genes	chrX_7_4830001	chrX_4830001	D20-c2
2006	chrX	4990048	4990073	chrX	4997263	4997288	roo	5	7215	2.0	1.0	1.5	2.0	7240	chrX	4990048	intron	CR44833 -	chrX	4993668	intron	CR44833 -	chrX	4997288	intron	CR44833 -	chrX_5_4990001	chrX_4990001	D20-c2
2008	chrX	5096282	5096303	chrX	5103848	5103869	springer	5	7566	1.5	7.0	4.2	1.0	7587	chrX	5096282	intron,intron	CG15465 +,rg +	chrX	5100076	intron,intron	CG15465 +,rg +	chrX	5103869	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	D20-c2
2010	chrX	5338716	5338735	chrX	5339970	5339989	jockey	5	1254	1.0	5.5	3.2	1.2	1273	chrX	5338716	intergenic	not near genes	chrX	5339352	intergenic	not near genes	chrX	5339989	intergenic	SK +	chrX_5_5335001	chrX_5335001	D20-c2
2016	chrX	6562818	6562837	chrX	6571301	6571320	Tirant	6	8482	4.5	3.0	3.8	1.2	8502	chrX	6562818	intron	CG34417 +	chrX	6567069	intron	CG34417 +	chrX	6571320	intron	CG34417 +	chrX_6_6565001	chrX_6565001	D20-c2
2019	chrX	7023600	7023634	chrX	7030991	7031025	Tabor	5	7391	4.0	2.0	3.0	1.2	7425	chrX	7023600	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031025	intron	CG12541 -	chrX_5_7025001	chrX_7025001	D20-c2
2025	chrX	8922325	8922363	chrX	8922760	8922798	jockey	10	435	2.0	2.5	2.2	3.1	473	chrX	8922325	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922798	intron	rdgA +	chrX_10_8920001	chrX_8920001	D20-c2
2029	chrX	9508132	9508166	chrX	9509651	9509685	jockey	8	1519	4.0	2.0	3.0	2.0	1553	chrX	9508132	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_8_9505001	chrX_9505001	D20-c2
2031	chrX	9575797	9575820	chrX	9576120	9576145	mdg3	13	325	3.5	4.0	3.8	2.7	348	chrX	9575797	intron,exon	CG32699 -,CG42395 -	chrX	9575971	intron,intron	CG32699 -,CG42395 -	chrX	9576145	intron,5` UTR	CG32699 -,CG42395 -	chrX_13_9575001	chrX_9575001	D20-c2
2041	chrX	10686059	10686084	chrX	10691197	10691222	roo	5	5138	1.5	4.0	2.8	1.3	5163	chrX	10686059	intron	X11Lbeta +	chrX	10688640	intron	X11Lbeta +	chrX	10691222	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	D20-c2
2044	chrX	10772673	10772691	chrX	10772757	10772775	Tirant	5	84	3.0	2.5	2.8	1.3	102	chrX	10772673	intron	CG15211 +	chrX	10772724	intron	CG15211 +	chrX	10772775	intron	CG15211 +	chrX_5_10770001	chrX_10770001	D20-c2
2048	chrX	11194450	11194459	chrX	11201872	11201881	gypsy5	5	7422	2.5	6.0	4.2	1.0	7431	chrX	11194450	intergenic	not near genes	chrX	11198166	intergenic	not near genes	chrX	11201881	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	D20-c2
2050	chrX	11312060	11312091	chrX	11319414	11319445	Stalker2	5	7354	2.5	3.5	3.0	1.2	7385	chrX	11312060	intergenic	not near genes	chrX	11315752	intergenic	not near genes	chrX	11319445	intergenic	not near genes	chrX_5_11315001	chrX_11315001	D20-c2
2051	chrX	11633421	11633441	chrX	11640476	11640496	297	5	7055	2.5	2.5	2.5	1.4	7075	chrX	11633421	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640496	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	D20-c2
2053	chrX	12168138	12168167	chrX	12173581	12173604	I-element	7	5441	2.5	1.0	1.8	2.5	5466	chrX	12168138	intron	Ten-a +	chrX	12170871	intron	Ten-a +	chrX	12173604	intron	Ten-a +	chrX_7_12170001	chrX_12170001	D20-c2
2061	chrX	13463642	13463667	chrX	13469220	13469245	mdg3	5	5578	0.5	1.0	0.8	2.8	5603	chrX	13463642	intron	Neto +	chrX	13466444	intron	Neto +	chrX	13469245	intron	Neto +	chrX_5_13465001	chrX_13465001	D20-c2
2066	chrX	14105022	14105054	chrX	14114174	14114206	roo	9	9152	4.5	2.0	3.2	2.1	9184	chrX	14105022	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114206	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	D20-c2
2073	chrX	14778026	14778058	chrX	14782824	14782856	Doc	5	4798	1.0	5.5	3.2	1.2	4830	chrX	14778026	intergenic	CG5347 +	chrX	14780441	intergenic	not near genes	chrX	14782856	intergenic	Ag5r2 -	chrX_5_14780001	chrX_14780001	D20-c2
2074	chrX	14818761	14818794	chrX	14823966	14823999	copia	8	5205	3.5	3.5	3.5	1.8	5238	chrX	14818761	intron	rut -	chrX	14821380	intron	rut -	chrX	14823999	intron	rut -	chrX_8_14820001	chrX_14820001	D20-c2
2075	chrX	14936862	14936868	chrX	14946120	14946126	roo	4	9258	3.5	3.5	3.5	0.9	9264	chrX	14936862	intron	pdgy -	chrX	14941494	intron	pdgy -	chrX	14946126	intron	pdgy -	chrX_4_14940001	chrX_14940001	D20-c2
2079	chrX	15273703	15273733	chrX	15274871	15274901	1360	7	1168	3.0	3.5	3.2	1.7	1198	chrX	15273703	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274901	intergenic	not near genes	chrX_7_15270001	chrX_15270001	D20-c2
2081	chrX	15413060	15413085	chrX	15417363	15417377	Juan	8	4302	2.5	4.5	3.5	1.8	4317	chrX	15413060	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417377	intron	Cngl -	chrX_8_15415001	chrX_15415001	D20-c2
2082	chrX	15435693	15435697	chrX	15436127	15436131	rover	4	434	4.0	4.5	4.2	0.8	438	chrX	15435693	intron	Cngl -	chrX	15435912	intron	Cngl -	chrX	15436131	intron	Cngl -	chrX_4_15435001	chrX_15435001	D20-c2
2088	chrX	16222789	16222799	chrX	16231140	16231150	roo	4	8351	0.5	2.0	1.2	1.8	8361	chrX	16222789	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231150	intergenic	not near genes	chrX_4_16225001	chrX_16225001	D20-c2
2089	chrX	16492646	16492669	chrX	16498224	16498247	mdg3	6	5578	3.0	3.0	3.0	1.5	5601	chrX	16492646	intron	para -	chrX	16495446	intron	para -	chrX	16498247	intron	para -	chrX_6_16495001	chrX_16495001	D20-c2
2090	chrX	16492674	16492677	chrX	16498222	16498255	mdg3	6	5573	3.0	2.5	2.8	1.6	5581	chrX	16492674	intron	para -	chrX	16495464	intron	para -	chrX	16498255	intron	para -	chrX_6_16495001	chrX_16495001	D20-c2
2094	chrX	16936004	16936030	chrX	16936423	16936449	jockey	5	419	0.0	2.0	1.0	2.5	445	chrX	16936004	intron	CG4928 +	chrX	16936226	intron	CG4928 +	chrX	16936449	intron	CG4928 +	chrX_5_16935001	chrX_16935001	D20-c2
2104	chrX	17792954	17792981	chrX	17796253	17796280	flea	5	3299	2.5	2.0	2.2	1.6	3326	chrX	17792954	intron	OdsH +	chrX	17794617	intron	OdsH +	chrX	17796280	intron	OdsH +	chrX_5_17790001	chrX_17790001	D20-c2
2107	chrX	18194064	18194103	chrX	18194600	18194639	BS	6	536	0.0	1.0	0.5	4.0	575	chrX	18194064	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194639	intron	Frq2 +	chrX_6_18190001	chrX_18190001	D20-c2
2110	chrX	18429498	18429526	chrX	18434810	18434838	Transpac	6	5312	2.0	3.5	2.8	1.6	5340	chrX	18429498	intergenic	not near genes	chrX	18432168	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_6_18430001	chrX_18430001	D20-c2
2129	chrX	19356999	19357011	chrX	19358441	19358453	NOF	4	1442	3.5	0.0	1.8	1.4	1454	chrX	19356999	intron	kek5 +	chrX	19357726	intron	kek5 +	chrX	19358453	intron	kek5 +	chrX_4_19355001	chrX_19355001	D20-c2
2130	chrX	19380157	19380187	chrX	19380399	19380429	pogo	7	242	2.0	1.5	1.8	2.5	272	chrX	19380157	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380429	intron	kek5 +	chrX_7_19380001	chrX_19380001	D20-c2
2132	chrX	19710070	19710100	chrX	19711857	19711887	S-element	13	1786	1.5	5.5	3.5	2.9	1817	chrX	19710070	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711887	intron	meso18E -	chrX_13_19710001	chrX_19710001	D20-c2
2142	chrX	20377328	20377347	chrX	20378796	20378815	hobo	7	1468	2.5	2.5	2.5	2.0	1487	chrX	20377328	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378815	intergenic	not near genes	chrX_7_20375001	chrX_20375001	D20-c2
2148	chrX	20940717	20940753	chrX	20942187	20942223	hobo	11	1469	2.5	2.5	2.5	3.1	1506	chrX	20940717	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942223	intergenic	not near genes	chrX_11_20940001	chrX_20940001	D20-c2
2153	chrX	21086128	21086151	chrX	21087158	21087181	jockey	7	1030	1.5	0.5	1.0	3.5	1053	chrX	21086128	intergenic	not near genes	chrX	21086654	intergenic	not near genes	chrX	21087181	intergenic	not near genes	chrX_7_21085001	chrX_21085001	D20-c2
2161	chrX	21458692	21458711	chrX	21464129	21464148	Ivk	5	5437	0.5	1.5	1.0	2.5	5456	chrX	21458692	intergenic	not near genes	chrX	21461420	intergenic	not near genes	chrX	21464148	intergenic	not near genes	chrX_5_21460001	chrX_21460001	D20-c2
2162	chrX	21474406	21474431	chrX	21474773	21474798	1731	4	367	2.5	3.0	2.8	1.1	392	chrX	21474406	intergenic	not near genes	chrX	21474602	intergenic	not near genes	chrX	21474798	intergenic	not near genes	chrX_4_21470001	chrX_21470001	D20-c2
2165	chrX	22522626	22522650	chrX	22525447	22525471	NOF	4	2821	0.5	0.5	0.5	2.7	2845	chrX	22522626	intron	CG17600 +	chrX	22524048	intron	CG17600 +	chrX	22525471	intron	CG17600 +	chrX_4_22520001	chrX_22520001	D20-c2
2169	chrX	22697496	22697522	chrX	22701794	22701820	Juan	5	4298	3.5	3.5	3.5	1.1	4324	chrX	22697496	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_5_22695001	chrX_22695001	D20-c2
2170	chrX	22811992	22812003	chrX	22816765	22816776	F-element	4	4773	4.5	2.0	3.2	1.0	4784	chrX	22811992	intergenic	CG12446 -	chrX	22814384	intergenic	not near genes	chrX	22816776	intergenic	not near genes	chrX_4_22810001	chrX_22810001	D20-c2
2174	chrX	22996322	22996340	chrX	23003551	23003573	roo	5	7232	1.5	2.0	1.8	1.8	7251	chrX	22996322	intron,intron	stnA -,stnB -	chrX	22999948	intron,intron	stnA -,stnB -	chrX	23003573	intron,intron	stnA -,stnB -	chrX_5_22995001	chrX_22995001	D20-c2