SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47486 chr2L 52566 52592 jockey 18 5105 10.0 5.0 7.5 2.1 5132 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_18_50001 chr2L_50001 D20-c2 2 chr2L 73793 73811 chr2L 73903 73921 13 110 18.5 16.5 17.5 0.7 128 chr2L 73793 3` UTR,intron CR44987 -,galectin + chr2L 73857 intron galectin + chr2L 73921 intron galectin + chr2L_13_70001 chr2L_70001 D20-c2 3 chr2L 129451 129461 chr2L 134000 134010 4 4549 24.0 16.5 20.2 0.2 4559 chr2L 129451 intron,intron CG11455 +,CG3164 - chr2L 131730 intron CG11455 + chr2L 134010 intron,3` UTR CG11455 +,Gs1 + chr2L_4_130001 chr2L_130001 D20-c2 4 chr2L 134142 134168 chr2L 134227 134253 5 85 10.0 6.5 8.2 0.5 111 chr2L 134142 intron,3` UTR CG11455 +,Gs1 + chr2L 134198 intron,3` UTR CG11455 +,Gs1 + chr2L 134253 intron,3` UTR CG11455 +,Gs1 + chr2L_5_130001 chr2L_130001 D20-c2 5 chr2L 263312 263318 chr2L 263459 263465 5 147 9.5 19.5 14.5 0.3 153 chr2L 263312 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263465 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 D20-c2 6 chr2L 300802 300831 chr2L 300874 300909 5 77 15.0 17.5 16.2 0.3 107 chr2L 300802 intron Pi3K21B + chr2L 300856 intron Pi3K21B + chr2L 300909 intron Pi3K21B + chr2L_5_300001 chr2L_300001 D20-c2 7 chr2L 307225 307256 chr2L 307377 307408 5 152 19.0 19.5 19.2 0.2 183 chr2L 307225 intron Plc21C + chr2L 307316 intron Plc21C + chr2L 307408 intron Plc21C + chr2L_5_305001 chr2L_305001 D20-c2 8 chr2L 325129 325154 chr2L 325207 325221 13 76 9.5 9.0 9.2 1.3 92 chr2L 325129 intron Plc21C + chr2L 325175 intron Plc21C + chr2L 325221 intron Plc21C + chr2L_13_325001 chr2L_325001 D20-c2 9 chr2L 347884 347913 chr2L 355385 355412 blood 14 7501 3.5 2.5 3.0 3.5 7528 chr2L 347884 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355412 3` UTR Plc21C + chr2L_14_350001 chr2L_350001 D20-c2 10 chr2L 371443 371458 chr2L 371523 371538 5 80 2.5 5.0 3.8 1.0 95 chr2L 371443 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371538 intergenic not near genes chr2L_5_370001 chr2L_370001 D20-c2 11 chr2L 395741 395779 chr2L 395824 395845 19 81 15.0 16.0 15.5 1.2 104 chr2L 395741 intergenic CR43718 + chr2L 395793 intergenic CR43718 + chr2L 395845 intergenic CR43718 + chr2L_19_395001 chr2L_395001 D20-c2 12 chr2L 467355 467364 chr2L 467455 467464 4 100 15.0 12.0 13.5 0.3 109 chr2L 467355 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467464 intron CG4297 - chr2L_4_465001 chr2L_465001 D20-c2 13 chr2L 590625 590649 chr2L 590724 590751 11 102 11.0 12.0 11.5 0.9 126 chr2L 590625 intron Gsc - chr2L 590688 intron Gsc - chr2L 590751 intron Gsc - chr2L_11_590001 chr2L_590001 D20-c2 14 chr2L 597172 597188 chr2L 597289 597305 4 118 40.5 41.5 41.0 0.1 133 chr2L 597172 intergenic not near genes chr2L 597238 intergenic not near genes chr2L 597305 intergenic not near genes chr2L_4_595001 chr2L_595001 D20-c2 15 chr2L 632704 632723 chr2L 632785 632804 4 81 12.5 13.0 12.8 0.3 100 chr2L 632704 intergenic not near genes chr2L 632754 intergenic not near genes chr2L 632804 intergenic not near genes chr2L_4_630001 chr2L_630001 D20-c2 16 chr2L 668436 668465 chr2L 668517 668546 5 81 16.5 20.0 18.2 0.3 110 chr2L 668436 intron ds - chr2L 668491 intron ds - chr2L 668546 intron ds - chr2L_5_665001 chr2L_665001 D20-c2 17 chr2L 686917 686949 chr2L 695958 695990 roo 14 9041 4.5 5.5 5.0 2.3 9073 chr2L 686917 intron ds - chr2L 691454 intron ds - chr2L 695990 intron ds - chr2L_14_690001 chr2L_690001 D20-c2 18 chr2L 763595 763630 chr2L 763672 763707 15 77 10.0 11.5 10.8 1.3 112 chr2L 763595 intergenic not near genes chr2L 763651 intergenic not near genes chr2L 763707 intergenic not near genes chr2L_15_760001 chr2L_760001 D20-c2 19 chr2L 769652 769683 chr2L 769888 769919 8 236 9.0 2.0 5.5 1.2 267 chr2L 769652 intergenic not near genes chr2L 769786 intergenic not near genes chr2L 769919 intergenic not near genes chr2L_8_765001 chr2L_765001 D20-c2 20 chr2L 770462 770493 chr2L 772244 772275 Bari1 19 1781 3.5 6.5 5.0 3.2 1813 chr2L 770462 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772275 intergenic CR44614 + chr2L_19_770001 chr2L_770001 D20-c2 21 chr2L 844941 844971 chr2L 845029 845059 10 88 22.0 22.0 22.0 0.4 118 chr2L 844941 intron drongo - chr2L 845000 intron drongo - chr2L 845059 intron drongo - chr2L_10_845001 chr2L_845001 D20-c2 22 chr2L 877839 877861 chr2L 877921 877943 16 82 13.5 5.0 9.2 1.6 104 chr2L 877839 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_16_875001 chr2L_875001 D20-c2 23 chr2L 865170 865197 chr2L 890446 890473 5 25277 33.5 26.0 29.8 0.2 25303 chr2L 865170 intron aru - chr2L 877822 3` UTR,exon CG15824 -,ninaA + chr2L 890473 intergenic not near genes chr2L_5_875001 chr2L_875001 D20-c2 24 chr2L 955987 955994 chr2L 956084 956091 7 97 0.0 15.5 7.8 0.8 104 chr2L 955987 intron CG4341 + chr2L 956039 intron CG4341 + chr2L 956091 intron CG4341 + chr2L_7_955001 chr2L_955001 D20-c2 25 chr2L 958958 958974 chr2L 959086 959102 6 128 36.5 17.5 27.0 0.2 144 chr2L 958958 intergenic not near genes chr2L 959030 intergenic not near genes chr2L 959102 intergenic not near genes chr2L_6_955001 chr2L_955001 D20-c2 26 chr2L 1042617 1042628 chr2L 1042695 1042706 6 78 16.5 13.5 15.0 0.4 89 chr2L 1042617 intron IA-2 - chr2L 1042662 intron IA-2 - chr2L 1042706 intron IA-2 - chr2L_6_1040001 chr2L_1040001 D20-c2 27 chr2L 1066092 1066127 chr2L 1066174 1066209 13 82 31.5 29.0 30.2 0.4 117 chr2L 1066092 intron S - chr2L 1066150 intron S - chr2L 1066209 intron S - chr2L_13_1065001 chr2L_1065001 D20-c2 28 chr2L 1220128 1220161 chr2L 1227595 1227628 blood 8 7467 40.5 17.5 29.0 0.3 7500 chr2L 1220128 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_8_1220001 chr2L_1220001 D20-c2 29 chr2L 1261243 1261260 chr2L 1261325 1261341 4 82 17.5 18.0 17.8 0.2 98 chr2L 1261243 intron robo3 + chr2L 1261292 intron robo3 + chr2L 1261341 intron robo3 + chr2L_4_1260001 chr2L_1260001 D20-c2 30 chr2L 1301751 1301782 chr2L 1302291 1302322 gypsy 13 540 4.0 5.5 4.8 2.2 571 chr2L 1301751 intergenic not near genes chr2L 1302036 intergenic not near genes chr2L 1302322 intergenic not near genes chr2L_13_1300001 chr2L_1300001 D20-c2 31 chr2L 1322021 1322034 chr2L 1322111 1322124 4 90 24.0 27.0 25.5 0.2 103 chr2L 1322021 intergenic not near genes chr2L 1322072 intergenic not near genes chr2L 1322124 intergenic not near genes chr2L_4_1320001 chr2L_1320001 D20-c2 32 chr2L 1344761 1344785 chr2L 2309571 2309595 8 964810 26.5 15.5 21.0 0.4 964834 chr2L 1344761 exon Cdlc2 + chr2L 1827178 intergenic not near genes chr2L 2309595 exon CG9967 - chr2L_8_1825001 chr2L_1825001 D20-c2 33 chr2L 1370251 1370277 chr2L 1370417 1370443 5 166 7.0 16.0 11.5 0.4 192 chr2L 1370251 intergenic not near genes chr2L 1370347 intergenic not near genes chr2L 1370443 intergenic not near genes chr2L_5_1370001 chr2L_1370001 D20-c2 34 chr2L 1438823 1438852 chr2L 1438904 1438933 14 81 3.0 5.5 4.2 2.7 110 chr2L 1438823 intergenic not near genes chr2L 1438878 intergenic not near genes chr2L 1438933 intergenic not near genes chr2L_14_1435001 chr2L_1435001 D20-c2 35 chr2L 1443342 1443358 chr2L 1443423 1443438 7 81 0.0 10.0 5.0 1.2 96 chr2L 1443342 3` UTR CG43402 + chr2L 1443390 3` UTR CG43402 + chr2L 1443438 3` UTR CG43402 + chr2L_7_1440001 chr2L_1440001 D20-c2 36 chr2L 1450695 1450728 chr2L 1450781 1450814 21 86 5.5 4.0 4.8 3.6 119 chr2L 1450695 intergenic not near genes chr2L 1450754 intergenic not near genes chr2L 1450814 intergenic not near genes chr2L_21_1450001 chr2L_1450001 D20-c2 37 chr2L 1458244 1458263 chr2L 1458322 1458341 17 77 12.0 17.0 14.5 1.1 97 chr2L 1458244 intergenic not near genes chr2L 1458292 intergenic not near genes chr2L 1458341 intergenic not near genes chr2L_17_1455001 chr2L_1455001 D20-c2 38 chr2L 1534056 1534085 chr2L 1534387 1534416 22 331 6.5 7.0 6.8 2.8 360 chr2L 1534056 intergenic not near genes chr2L 1534236 intergenic not near genes chr2L 1534416 intergenic not near genes chr2L_22_1530001 chr2L_1530001 D20-c2 39 chr2L 1536500 1536509 chr2L 1536633 1536642 6 133 0.0 11.5 5.8 0.9 142 chr2L 1536500 intergenic not near genes chr2L 1536571 intergenic not near genes chr2L 1536642 intergenic not near genes chr2L_6_1535001 chr2L_1535001 D20-c2 40 chr2L 1536511 1536526 chr2L 1536630 1536659 18 132 0.0 8.0 4.0 3.6 148 chr2L 1536511 intergenic not near genes chr2L 1536585 intergenic not near genes chr2L 1536659 intergenic not near genes chr2L_18_1535001 chr2L_1535001 D20-c2 41 chr2L 1570686 1570717 chr2L 1573559 1573590 F-element 21 2873 9.0 8.0 8.5 2.2 2904 chr2L 1570686 intron haf + chr2L 1572138 intron haf + chr2L 1573590 intron haf + chr2L_21_1570001 chr2L_1570001 D20-c2 42 chr2L 1581917 1581947 chr2L 1582023 1582053 21 106 1.5 3.5 2.5 6.0 136 chr2L 1581917 intron haf + chr2L 1581985 intron haf + chr2L 1582053 intron haf + chr2L_21_1580001 chr2L_1580001 D20-c2 43 chr2L 1590956 1590991 chr2L 1591033 1591068 24 77 4.0 4.0 4.0 4.8 112 chr2L 1590956 intron haf + chr2L 1591012 intron haf + chr2L 1591068 intron haf + chr2L_24_1590001 chr2L_1590001 D20-c2 44 chr2L 1638158 1638183 chr2L 1638244 1638269 14 86 6.5 6.5 6.5 1.9 111 chr2L 1638158 intergenic not near genes chr2L 1638214 intergenic not near genes chr2L 1638269 intergenic not near genes chr2L_14_1635001 chr2L_1635001 D20-c2 45 chr2L 1678957 1679009 chr2L 1686441 1686475 blood 6 7469 0.5 5.5 3.0 1.5 7518 chr2L 1678957 intron chinmo + chr2L 1682716 intron chinmo + chr2L 1686475 intron chinmo + chr2L_6_1680001 chr2L_1680001 D20-c2 46 chr2L 1711353 1711387 chr2L 1711678 1711712 mdg3 14 325 6.0 4.5 5.2 2.3 359 chr2L 1711353 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_14_1710001 chr2L_1710001 D20-c2 47 chr2L 1721829 1721853 chr2L 1721914 1721938 5 85 0.0 3.0 1.5 2.0 109 chr2L 1721829 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721938 intron Rim2 - chr2L_5_1720001 chr2L_1720001 D20-c2 48 chr2L 1878240 1878271 chr2L 1878365 1878396 7 124 1.0 2.5 1.8 2.5 156 chr2L 1878240 intron CG31663 - chr2L 1878318 intron CG31663 - chr2L 1878396 intron CG31663 - chr2L_7_1875001 chr2L_1875001 D20-c2 49 chr2L 1910536 1910564 chr2L 1910626 1910654 7 90 2.0 2.0 2.0 2.3 118 chr2L 1910536 intron CG7337 + chr2L 1910595 intron CG7337 + chr2L 1910654 intron CG7337 + chr2L_7_1910001 chr2L_1910001 D20-c2 50 chr2L 1993194 1993229 chr2L 1993281 1993316 5 87 6.0 8.5 7.2 0.6 122 chr2L 1993194 intergenic not near genes chr2L 1993255 intergenic not near genes chr2L 1993316 intergenic not near genes chr2L_5_1990001 chr2L_1990001 D20-c2 51 chr2L 2004842 2004874 chr2L 2005286 2005318 9 444 4.5 4.0 4.2 1.7 476 chr2L 2004842 intron CG33543 - chr2L 2005080 intron CG33543 - chr2L 2005318 intron CG33543 - chr2L_9_2005001 chr2L_2005001 D20-c2 52 chr2L 2100379 2100406 chr2L 2109531 2109546 roo 12 9150 9.0 8.0 8.5 1.3 9167 chr2L 2100379 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_12_2100001 chr2L_2100001 D20-c2 53 chr2L 2112112 2112142 chr2L 2119775 2119805 opus 10 7662 7.0 2.5 4.8 1.7 7693 chr2L 2112112 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119805 intergenic not near genes chr2L_10_2115001 chr2L_2115001 D20-c2 54 chr2L 2250423 2250443 chr2L 2251191 2251211 4 768 2.5 0.0 1.2 1.8 788 chr2L 2250423 intergenic Ser12 - chr2L 2250817 exon Ser12 - chr2L 2251211 exon Ser12 - chr2L_4_2250001 chr2L_2250001 D20-c2 55 chr2L 2260804 2260836 chr2L 2260891 2260923 13 87 3.0 3.0 3.0 3.2 119 chr2L 2260804 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260923 intergenic not near genes chr2L_13_2260001 chr2L_2260001 D20-c2 56 chr2L 2282982 2283014 chr2L 2283143 2283175 9 161 6.0 2.5 4.2 1.7 193 chr2L 2282982 intergenic not near genes chr2L 2283078 intergenic not near genes chr2L 2283175 intergenic not near genes chr2L_9_2280001 chr2L_2280001 D20-c2 57 chr2L 2294038 2294074 chr2L 2299244 2299280 copia 15 5204 4.0 3.5 3.8 3.1 5242 chr2L 2294038 intergenic not near genes chr2L 2296659 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_15_2295001 chr2L_2295001 D20-c2 58 chr2L 2299331 2299364 chr2L 2299410 2299443 13 79 3.0 5.0 4.0 2.6 112 chr2L 2299331 intergenic not near genes chr2L 2299387 intergenic not near genes chr2L 2299443 intergenic not near genes chr2L_13_2295001 chr2L_2295001 D20-c2 59 chr2L 1375473 1375505 chr2L 2353411 2353443 27 977942 30.5 38.0 34.2 0.8 977970 chr2L 1375473 intergenic not near genes chr2L 1864458 intron CG31663 - chr2L 2353443 intron,exon CG9967 -,eys + chr2L_27_1860001 chr2L_1860001 D20-c2 60 chr2L 2503714 2503742 chr2L 2504494 2504522 6 779 1.0 1.0 1.0 3.0 808 chr2L 2503714 intergenic not near genes chr2L 2504118 intergenic not near genes chr2L 2504522 intergenic not near genes chr2L_6_2500001 chr2L_2500001 D20-c2 61 chr2L 2565551 2565570 chr2L 2571620 2571639 297 4 6070 4.0 0.5 2.2 1.2 6088 chr2L 2565551 exon Cyp309a2 - chr2L 2568595 intron Cyp309a2 - chr2L 2571639 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 D20-c2 62 chr2L 2587382 2587411 chr2L 2587621 2587650 5 239 15.0 13.5 14.2 0.3 268 chr2L 2587382 intergenic not near genes chr2L 2587516 intergenic not near genes chr2L 2587650 intergenic not near genes chr2L_5_2585001 chr2L_2585001 D20-c2 63 chr2L 2587820 2587847 chr2L 2587900 2587927 12 80 5.0 4.5 4.8 2.1 107 chr2L 2587820 intergenic not near genes chr2L 2587874 intergenic not near genes chr2L 2587927 intergenic not near genes chr2L_12_2585001 chr2L_2585001 D20-c2 64 chr2L 2618034 2618062 chr2L 2618114 2618142 16 79 4.0 1.0 2.5 4.6 108 chr2L 2618034 intergenic not near genes chr2L 2618088 intergenic not near genes chr2L 2618142 intergenic not near genes chr2L_16_2615001 chr2L_2615001 D20-c2 65 chr2L 2618353 2618382 chr2L 2618452 2618482 7 100 12.0 11.5 11.8 0.5 129 chr2L 2618353 intergenic not near genes chr2L 2618418 intergenic not near genes chr2L 2618482 intergenic not near genes chr2L_7_2615001 chr2L_2615001 D20-c2 66 chr2L 2661197 2661232 chr2L 2663036 2663071 I-element 9 1839 2.5 6.0 4.2 1.7 1874 chr2L 2661197 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_9_2660001 chr2L_2660001 D20-c2 67 chr2L 2667622 2667655 chr2L 2667702 2667735 5 80 6.5 10.0 8.2 0.5 113 chr2L 2667622 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667735 intergenic not near genes chr2L_5_2665001 chr2L_2665001 D20-c2 68 chr2L 2698866 2698892 chr2L 2698954 2698980 8 88 2.0 2.5 2.2 2.5 114 chr2L 2698866 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_8_2695001 chr2L_2695001 D20-c2 69 chr2L 2772609 2772629 chr2L 2779194 2779214 297 5 6584 3.5 5.5 4.5 0.9 6605 chr2L 2772609 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779214 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 D20-c2 70 chr2L 2793940 2793973 chr2L 2794021 2794054 12 81 4.0 1.0 2.5 3.4 114 chr2L 2793940 intron Syt1 - chr2L 2793997 intron Syt1 - chr2L 2794054 intron Syt1 - chr2L_12_2790001 chr2L_2790001 D20-c2 71 chr2L 2909923 2909932 chr2L 2910008 2910017 4 85 4.0 6.5 5.2 0.6 94 chr2L 2909923 intron lilli + chr2L 2909970 intron lilli + chr2L 2910017 intron lilli + chr2L_4_2905001 chr2L_2905001 D20-c2 72 chr2L 2937423 2937449 chr2L 2937501 2937527 5 78 8.0 7.0 7.5 0.6 104 chr2L 2937423 intron lilli + chr2L 2937475 intron lilli + chr2L 2937527 intron lilli + chr2L_5_2935001 chr2L_2935001 D20-c2 73 chr2L 3026215 3026246 chr2L 3026873 3026901 15 655 41.5 43.5 42.5 0.3 686 chr2L 3026215 3` UTR CG3542 + chr2L 3026558 3` UTR CG3605 - chr2L 3026901 exon CG3605 - chr2L_15_3025001 chr2L_3025001 D20-c2 74 chr2L 3044903 3044926 chr2L 3045001 3045024 11 98 7.5 5.0 6.2 1.5 121 chr2L 3044903 intron v(2)k05816 + chr2L 3044964 intron v(2)k05816 + chr2L 3045024 intron v(2)k05816 + chr2L_11_3040001 chr2L_3040001 D20-c2 75 chr2L 3073028 3073063 chr2L 3078232 3078267 copia 20 5203 7.5 4.0 5.8 2.9 5239 chr2L 3073028 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_20_3075001 chr2L_3075001 D20-c2 76 chr2L 3078484 3078509 chr2L 3078795 3078820 5 311 12.0 10.0 11.0 0.4 336 chr2L 3078484 intron toc - chr2L 3078652 intron toc - chr2L 3078820 intron toc - chr2L_5_3075001 chr2L_3075001 D20-c2 77 chr2L 3147277 3147299 chr2L 3147355 3147377 5 78 16.0 16.5 16.2 0.3 100 chr2L 3147277 3` UTR Mad - chr2L 3147327 3` UTR Mad - chr2L 3147377 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 D20-c2 78 chr2L 3186476 3186494 chr2L 3186563 3186581 4 87 9.0 9.0 9.0 0.4 105 chr2L 3186476 intron CG34393 - chr2L 3186528 intron CG34393 - chr2L 3186581 intron CG34393 - chr2L_4_3185001 chr2L_3185001 D20-c2 79 chr2L 3192209 3192231 chr2L 3192321 3192321 5 108 6.0 3.5 4.8 0.9 112 chr2L 3192209 exon CG34393 - chr2L 3192265 intron CG34393 - chr2L 3192321 intron CG34393 - chr2L_5_3190001 chr2L_3190001 D20-c2 80 chr2L 3193836 3193855 chr2L 3193923 3193942 7 87 13.5 11.0 12.2 0.5 106 chr2L 3193836 intron CG34393 - chr2L 3193889 intron CG34393 - chr2L 3193942 intron CG34393 - chr2L_7_3190001 chr2L_3190001 D20-c2 81 chr2L 3202742 3202768 chr2L 3210172 3210198 mdg1 6 7430 2.5 3.0 2.8 1.6 7456 chr2L 3202742 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210198 intergenic CR45336 + chr2L_6_3205001 chr2L_3205001 D20-c2 82 chr2L 3221498 3221529 chr2L 3221714 3221745 4 216 6.5 3.0 4.8 0.7 247 chr2L 3221498 intergenic not near genes chr2L 3221622 intergenic not near genes chr2L 3221745 intergenic not near genes chr2L_4_3220001 chr2L_3220001 D20-c2 83 chr2L 3251493 3251522 chr2L 3259059 3259088 springer 7 7566 5.0 4.0 4.5 1.3 7595 chr2L 3251493 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259088 intergenic not near genes chr2L_7_3255001 chr2L_3255001 D20-c2 84 chr2L 3261341 3261358 chr2L 3261490 3261507 4 149 3.0 10.0 6.5 0.5 166 chr2L 3261341 intergenic CR45337 -,CR45338 - chr2L 3261424 intergenic CR45337 -,CR45338 - chr2L 3261507 intergenic CR45338 -,CR45337 - chr2L_4_3260001 chr2L_3260001 D20-c2 85 chr2L 3286134 3286142 chr2L 3286213 3286221 4 79 7.5 10.0 8.8 0.4 87 chr2L 3286134 intergenic not near genes chr2L 3286178 intergenic not near genes chr2L 3286221 intergenic not near genes chr2L_4_3285001 chr2L_3285001 D20-c2 86 chr2L 3291237 3291269 chr2L 3291318 3291334 5 78 9.0 12.5 10.8 0.4 97 chr2L 3291237 intergenic CG9664 - chr2L 3291286 3` UTR CG9664 - chr2L 3291334 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 D20-c2 87 chr2L 3323258 3323284 chr2L 3323366 3323392 7 108 12.0 12.0 12.0 0.5 134 chr2L 3323258 intergenic CG8837 + chr2L 3323325 intergenic CG8837 + chr2L 3323392 intergenic CG8837 + chr2L_7_3320001 chr2L_3320001 D20-c2 88 chr2L 3388599 3388621 chr2L 3388841 3388863 pogo 5 242 4.5 8.0 6.2 0.7 264 chr2L 3388599 intergenic CG42460 - chr2L 3388731 intergenic CG42460 - chr2L 3388863 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 D20-c2 89 chr2L 3393545 3393572 chr2L 3393657 3393684 11 112 10.0 9.5 9.8 1.0 139 chr2L 3393545 intergenic not near genes chr2L 3393614 intergenic not near genes chr2L 3393684 intergenic not near genes chr2L_11_3390001 chr2L_3390001 D20-c2 90 chr2L 3508347 3508365 chr2L 3508426 3508444 6 79 2.0 2.5 2.2 1.9 97 chr2L 3508347 intergenic tim -,CR45299 + chr2L 3508396 intergenic CR45299 +,tim - chr2L 3508444 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 D20-c2 91 chr2L 3523033 3523055 chr2L 3523147 3523169 7 114 3.0 2.5 2.8 1.8 136 chr2L 3523033 exon Sr-CIV - chr2L 3523101 intron Sr-CIV - chr2L 3523169 exon Sr-CIV - chr2L_7_3520001 chr2L_3520001 D20-c2 92 chr2L 3544512 3544537 chr2L 3544607 3544632 4 95 11.5 10.0 10.8 0.3 120 chr2L 3544512 intron drm + chr2L 3544572 intron drm + chr2L 3544632 intron drm + chr2L_4_3540001 chr2L_3540001 D20-c2 93 chr2L 3627895 3627906 chr2L 3627984 3627995 4 89 12.5 6.0 9.2 0.4 100 chr2L 3627895 intron for - chr2L 3627945 intron for - chr2L 3627995 intron for - chr2L_4_3625001 chr2L_3625001 D20-c2 94 chr2L 3634102 3634131 chr2L 3634185 3634214 4 83 4.0 7.5 5.8 0.6 112 chr2L 3634102 intron for - chr2L 3634158 intron for - chr2L 3634214 intron for - chr2L_4_3630001 chr2L_3630001 D20-c2 95 chr2L 3819030 3819050 chr2L 3819113 3819133 6 83 13.5 10.5 12.0 0.5 103 chr2L 3819030 intergenic CR44077 + chr2L 3819082 intergenic not near genes chr2L 3819133 intergenic not near genes chr2L_6_3815001 chr2L_3815001 D20-c2 96 chr2L 3831837 3831862 chr2L 3831919 3831944 7 81 2.0 1.0 1.5 2.8 107 chr2L 3831837 intergenic not near genes chr2L 3831890 intergenic not near genes chr2L 3831944 intergenic not near genes chr2L_7_3830001 chr2L_3830001 D20-c2 97 chr2L 3891900 3891924 chr2L 3891986 3892010 4 86 1.5 2.5 2.0 1.3 110 chr2L 3891900 intron capu - chr2L 3891955 intron capu - chr2L 3892010 intron capu - chr2L_4_3890001 chr2L_3890001 D20-c2 98 chr2L 4661843 4661853 chr2L 4669424 4669434 opus 4 7581 4.5 7.5 6.0 0.6 7591 chr2L 4661843 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669434 intergenic not near genes chr2L_4_4665001 chr2L_4665001 D20-c2 99 chr2L 4819496 4819518 chr2L 4819620 4819642 6 124 3.5 6.0 4.8 1.0 146 chr2L 4819496 intergenic not near genes chr2L 4819569 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_6_4815001 chr2L_4815001 D20-c2 100 chr2L 4841071 4841104 chr2L 4841148 4841181 22 75 0.5 5.5 3.0 5.5 110 chr2L 4841071 intron CG12194 + chr2L 4841126 intron CG12194 + chr2L 4841181 exon CG12194 + chr2L_22_4840001 chr2L_4840001 D20-c2 101 chr2L 4858466 4858479 chr2L 4858555 4858568 5 89 2.5 0.0 1.2 2.3 102 chr2L 4858466 intron pog + chr2L 4858517 intron pog + chr2L 4858568 intron pog + chr2L_5_4855001 chr2L_4855001 D20-c2 102 chr2L 4862287 4862310 chr2L 4862364 4862387 12 77 6.0 8.0 7.0 1.5 100 chr2L 4862287 intron pog + chr2L 4862337 intron pog + chr2L 4862387 intron pog + chr2L_12_4860001 chr2L_4860001 D20-c2 103 chr2L 4896457 4896478 chr2L 4896550 4896571 6 93 2.0 3.0 2.5 1.7 114 chr2L 4896457 intron CG3036 + chr2L 4896514 intron CG3036 + chr2L 4896571 intron CG3036 + chr2L_6_4895001 chr2L_4895001 D20-c2 104 chr2L 4923236 4923250 chr2L 4923328 4923342 6 92 0.0 2.0 1.0 3.0 106 chr2L 4923236 intron hoe1 - chr2L 4923289 intron hoe1 - chr2L 4923342 intron hoe1 - chr2L_6_4920001 chr2L_4920001 D20-c2 105 chr2L 5027957 5027980 chr2L 5028042 5028065 8 85 1.5 3.5 2.5 2.3 108 chr2L 5027957 intron vkg - chr2L 5028011 intron vkg - chr2L 5028065 intron vkg - chr2L_8_5025001 chr2L_5025001 D20-c2 106 chr2L 5117299 5117324 chr2L 5117382 5117407 9 83 1.0 2.0 1.5 3.6 108 chr2L 5117299 intron Msp300 + chr2L 5117353 intron Msp300 + chr2L 5117407 intron Msp300 + chr2L_9_5115001 chr2L_5115001 D20-c2 107 chr2L 5120973 5121006 chr2L 5121068 5121101 13 95 1.5 1.5 1.5 5.2 128 chr2L 5120973 intron Msp300 + chr2L 5121037 intron Msp300 + chr2L 5121101 intron Msp300 + chr2L_13_5120001 chr2L_5120001 D20-c2 108 chr2L 5207791 5207821 chr2L 5213800 5213830 13 6009 28.0 32.5 30.2 0.4 6039 chr2L 5207791 exon Cyp28d2 + chr2L 5210810 exon Cyp28d1 + chr2L 5213830 intron CG7742 - chr2L_13_5210001 chr2L_5210001 D20-c2 109 chr2L 5262525 5262541 chr2L 5262603 5262619 15 78 9.0 4.0 6.5 2.0 94 chr2L 5262525 intron tkv - chr2L 5262572 intron tkv - chr2L 5262619 intron tkv - chr2L_15_5260001 chr2L_5260001 D20-c2 110 chr2L 5342770 5342799 chr2L 5345151 5345180 Doc 5 2381 2.0 2.0 2.0 1.7 2410 chr2L 5342770 intergenic not near genes chr2L 5343975 intergenic not near genes chr2L 5345180 intergenic not near genes chr2L_5_5340001 chr2L_5340001 D20-c2 111 chr2L 5378430 5378451 chr2L 5378510 5378531 8 80 3.0 2.5 2.8 2.1 101 chr2L 5378430 intergenic not near genes chr2L 5378480 intergenic not near genes chr2L 5378531 intergenic not near genes chr2L_8_5375001 chr2L_5375001 D20-c2 112 chr2L 5398012 5398041 chr2L 5398093 5398122 8 81 3.0 7.5 5.2 1.3 110 chr2L 5398012 intergenic not near genes chr2L 5398067 intergenic not near genes chr2L 5398122 intergenic not near genes chr2L_8_5395001 chr2L_5395001 D20-c2 113 chr2L 5488015 5488030 chr2L 5488096 5488111 7 81 2.0 4.0 3.0 1.8 96 chr2L 5488015 intergenic not near genes chr2L 5488063 intergenic not near genes chr2L 5488111 intergenic not near genes chr2L_7_5485001 chr2L_5485001 D20-c2 114 chr2L 5827722 5827739 chr2L 5836720 5836748 roo 5 9004 2.5 3.5 3.0 1.2 9026 chr2L 5827722 intron TrissinR + chr2L 5832235 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_5_5830001 chr2L_5830001 D20-c2 115 chr2L 5839174 5839197 chr2L 5839256 5839287 14 86 1.0 3.5 2.2 4.4 113 chr2L 5839174 intron TrissinR + chr2L 5839230 intron TrissinR + chr2L 5839287 intron TrissinR + chr2L_14_5835001 chr2L_5835001 D20-c2 116 chr2L 5864669 5864701 chr2L 5865590 5865622 12 921 4.0 4.0 4.0 2.4 953 chr2L 5864669 intron rau - chr2L 5865146 intron rau - chr2L 5865622 intron rau - chr2L_12_5865001 chr2L_5865001 D20-c2 117 chr2L 5870476 5870507 chr2L 5870554 5870585 13 78 1.5 4.0 2.8 3.4 109 chr2L 5870476 intron rau - chr2L 5870530 intron rau - chr2L 5870585 intron rau - chr2L_13_5870001 chr2L_5870001 D20-c2 118 chr2L 5887612 5887633 chr2L 5887694 5887715 4 82 0.5 3.0 1.8 1.4 103 chr2L 5887612 3` UTR CR44577 - chr2L 5887664 3` UTR CR44577 - chr2L 5887715 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 D20-c2 119 chr2L 5926271 5926454 chr2L 5926352 5926543 5 86 0.0 0.0 0.0 5.0 272 chr2L 5926271 intron dsf + chr2L 5926407 intron dsf + chr2L 5926543 intron dsf + chr2L_5_5925001 chr2L_5925001 D20-c2 120 chr2L 5931321 5931332 chr2L 5931434 5931445 5 113 1.5 2.5 2.0 1.7 124 chr2L 5931321 intron dsf + chr2L 5931383 intron dsf + chr2L 5931445 intron dsf + chr2L_5_5930001 chr2L_5930001 D20-c2 121 chr2L 5944551 5944566 chr2L 5948992 5949007 10 4441 37.5 12.5 25.0 0.4 4456 chr2L 5944551 intron Gpdh + chr2L 5946779 intron Gpdh + chr2L 5949007 intergenic Gpdh +,CG9044 + chr2L_10_5945001 chr2L_5945001 D20-c2 122 chr2L 5989045 5989062 chr2L 5989122 5989139 7 77 2.5 1.0 1.8 2.5 94 chr2L 5989045 intergenic ifc +,lid - chr2L 5989092 intergenic ifc +,lid - chr2L 5989139 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 D20-c2 123 chr2L 6002445 6002469 chr2L 6002532 6002556 7 87 1.0 2.5 1.8 2.5 111 chr2L 6002445 3` UTR Tsp26A + chr2L 6002500 3` UTR Tsp26A + chr2L 6002556 3` UTR Tsp26A + chr2L_7_6000001 chr2L_6000001 D20-c2 124 chr2L 6050441 6050455 chr2L 6050546 6050560 6 105 2.5 3.0 2.8 1.6 119 chr2L 6050441 intergenic CG12393 +,CG9135 + chr2L 6050500 intergenic CG12393 +,CG9135 + chr2L 6050560 intergenic CG12393 +,CG9135 + chr2L_6_6050001 chr2L_6050001 D20-c2 125 chr2L 6079494 6079522 chr2L 6079577 6079605 14 83 5.5 4.0 4.8 2.4 111 chr2L 6079494 5` UTR CR9162 + chr2L 6079550 5` UTR CR9162 + chr2L 6079605 5` UTR CR9162 + chr2L_14_6075001 chr2L_6075001 D20-c2 126 chr2L 6154460 6154485 chr2L 6154537 6154561 10 77 4.0 0.5 2.2 3.1 101 chr2L 6154460 intron CG31639 - chr2L 6154510 intron CG31639 - chr2L 6154561 intron CG31639 - chr2L_10_6150001 chr2L_6150001 D20-c2 127 chr2L 6155374 6155399 chr2L 6155450 6155470 8 76 3.0 2.5 2.8 2.1 96 chr2L 6155374 intergenic CG31639 - chr2L 6155422 intergenic CG31639 - chr2L 6155470 intergenic CG31639 - chr2L_8_6155001 chr2L_6155001 D20-c2 128 chr2L 6185934 6185952 chr2L 6186014 6186033 6 81 1.5 3.5 2.5 1.7 99 chr2L 6185934 intron CG34380 + chr2L 6185984 intron CG34380 + chr2L 6186033 intron CG34380 + chr2L_6_6185001 chr2L_6185001 D20-c2 129 chr2L 6241656 6241690 chr2L 6241735 6241769 10 79 2.0 2.0 2.0 3.3 113 chr2L 6241656 intergenic not near genes chr2L 6241712 intergenic not near genes chr2L 6241769 intergenic not near genes chr2L_10_6240001 chr2L_6240001 D20-c2 130 chr2L 6261594 6261615 chr2L 6261747 6261764 9 150 3.0 2.0 2.5 2.6 170 chr2L 6261594 intron Ddr + chr2L 6261679 intron Ddr + chr2L 6261764 intron Ddr + chr2L_9_6260001 chr2L_6260001 D20-c2 131 chr2L 6279642 6279654 chr2L 6279722 6279734 INE-1 6 80 2.5 1.0 1.8 2.1 92 chr2L 6279642 intron Ddr + chr2L 6279688 intron Ddr + chr2L 6279734 intron Ddr + chr2L_6_6275001 chr2L_6275001 D20-c2 132 chr2L 6283943 6283977 chr2L 6284055 6284089 8 112 0.5 1.5 1.0 4.0 146 chr2L 6283943 intron Ddr + chr2L 6284016 intron Ddr + chr2L 6284089 intron Ddr + chr2L_8_6280001 chr2L_6280001 D20-c2 133 chr2L 6363149 6363177 chr2L 6366075 6366104 Burdock 17 2926 4.0 3.5 3.8 3.5 2955 chr2L 6363149 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366104 intergenic not near genes chr2L_17_6360001 chr2L_6360001 D20-c2 134 chr2L 6426852 6426888 chr2L 6445113 6445149 roo 10 18261 2.0 5.5 3.8 2.1 18297 chr2L 6426852 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445149 exon CG9527 - chr2L_10_6435001 chr2L_6435001 D20-c2 135 chr2L 6463552 6463583 chr2L 6463645 6463676 28 92 8.0 4.0 6.0 4.0 124 chr2L 6463552 exon CG16947 - chr2L 6463614 exon CG16947 - chr2L 6463676 exon CG16947 - chr2L_28_6460001 chr2L_6460001 D20-c2 136 chr2L 6590092 6590124 chr2L 6590171 6590203 10 79 2.0 4.0 3.0 2.5 111 chr2L 6590092 intron CG11319 - chr2L 6590148 intron CG11319 - chr2L 6590203 intron CG11319 - chr2L_10_6590001 chr2L_6590001 D20-c2 137 chr2L 6626886 6626918 chr2L 6626972 6627004 13 86 6.0 5.0 5.5 2.0 118 chr2L 6626886 intron Oatp26F - chr2L 6626945 intron Oatp26F - chr2L 6627004 intron Oatp26F - chr2L_13_6625001 chr2L_6625001 D20-c2 138 chr2L 6724535 6724552 chr2L 6724617 6724636 8 84 3.0 2.0 2.5 2.3 101 chr2L 6724535 intron Liprin-alpha + chr2L 6724586 intron Liprin-alpha + chr2L 6724636 intron Liprin-alpha + chr2L_8_6720001 chr2L_6720001 D20-c2 139 chr2L 6744565 6744594 chr2L 6744652 6744681 9 87 2.5 4.0 3.2 2.1 116 chr2L 6744565 intron CG11221 + chr2L 6744623 intron CG11221 + chr2L 6744681 intron,3` UTR CG11221 +,CG31910 - chr2L_9_6740001 chr2L_6740001 D20-c2 140 chr2L 6771987 6772018 chr2L 6772075 6772106 9 88 3.5 7.0 5.2 1.5 119 chr2L 6771987 intron CG11321 - chr2L 6772046 intron CG11321 - chr2L 6772106 intron CG11321 - chr2L_9_6770001 chr2L_6770001 D20-c2 141 chr2L 6787891 6787915 chr2L 6789841 6789865 9 1950 26.0 14.0 20.0 0.4 1974 chr2L 6787891 intergenic not near genes chr2L 6788878 intergenic not near genes chr2L 6789865 3` UTR nrv2 - chr2L_9_6785001 chr2L_6785001 D20-c2 142 chr2L 6799534 6799560 chr2L 6799623 6799649 9 89 3.0 2.5 2.8 2.4 115 chr2L 6799534 5` UTR CR43610 + chr2L 6799592 5` UTR CR43610 + chr2L 6799649 intergenic CR43610 +,CG17376 - chr2L_9_6795001 chr2L_6795001 D20-c2 143 chr2L 6823178 6823200 chr2L 6823264 6823286 7 86 2.0 2.5 2.2 2.2 108 chr2L 6823178 intron sens-2 + chr2L 6823232 intron sens-2 + chr2L 6823286 intron sens-2 + chr2L_7_6820001 chr2L_6820001 D20-c2 144 chr2L 6833384 6833420 chr2L 6833472 6833508 15 88 0.5 4.0 2.2 4.7 124 chr2L 6833384 intron sens-2 + chr2L 6833446 intron sens-2 + chr2L 6833508 intron sens-2 + chr2L_15_6830001 chr2L_6830001 D20-c2 145 chr2L 6876775 6876810 chr2L 6882966 6883002 diver 11 6192 3.0 1.5 2.2 3.4 6227 chr2L 6876775 intron Nlg2 + chr2L 6879888 intron Nlg2 + chr2L 6883002 intron Nlg2 + chr2L_11_6875001 chr2L_6875001 D20-c2 146 chr2L 6891443 6891471 chr2L 6891542 6891570 12 99 2.0 2.0 2.0 4.0 127 chr2L 6891443 intron Nlg2 + chr2L 6891506 intron Nlg2 + chr2L 6891570 intron Nlg2 + chr2L_12_6890001 chr2L_6890001 D20-c2 147 chr2L 6969275 6969305 chr2L 6969356 6969386 14 81 1.5 4.0 2.8 3.7 111 chr2L 6969275 3` UTR snRNP-U1-70K - chr2L 6969330 3` UTR snRNP-U1-70K - chr2L 6969386 3` UTR snRNP-U1-70K - chr2L_14_6965001 chr2L_6965001 D20-c2 148 chr2L 7100979 7101013 chr2L 7101206 7101240 13 227 5.0 1.5 3.2 3.1 261 chr2L 7100979 intron Pvf3 - chr2L 7101110 intron Pvf3 - chr2L 7101240 intron Pvf3 - chr2L_13_7100001 chr2L_7100001 D20-c2 149 chr2L 7111768 7111790 chr2L 7111854 7111876 4 86 2.5 0.0 1.2 1.8 108 chr2L 7111768 intron Pvf3 - chr2L 7111822 intron Pvf3 - chr2L 7111876 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 D20-c2 150 chr2L 7162755 7162777 chr2L 7162846 7162868 8 91 1.5 2.5 2.0 2.7 113 chr2L 7162755 intergenic not near genes chr2L 7162812 intergenic not near genes chr2L 7162868 intergenic not near genes chr2L_8_7160001 chr2L_7160001 D20-c2 151 chr2L 7218401 7218434 chr2L 7218480 7218513 5 79 2.5 2.0 2.2 1.6 112 chr2L 7218401 intron CG13784 - chr2L 7218457 intron CG13784 - chr2L 7218513 intron CG13784 - chr2L_5_7215001 chr2L_7215001 D20-c2 152 chr2L 7325919 7325947 chr2L 7326005 7326033 4 86 1.0 1.0 1.0 2.0 114 chr2L 7325919 intergenic not near genes chr2L 7325976 intergenic not near genes chr2L 7326033 intergenic not near genes chr2L_4_7325001 chr2L_7325001 D20-c2 153 chr2L 7331680 7331695 chr2L 7331777 7331792 6 97 5.0 2.5 3.8 1.2 112 chr2L 7331680 intergenic not near genes chr2L 7331736 intergenic not near genes chr2L 7331792 intergenic not near genes chr2L_6_7330001 chr2L_7330001 D20-c2 154 chr2L 7343327 7343346 chr2L 7350444 7350463 roo 6 7117 7.5 5.5 6.5 0.8 7136 chr2L 7343327 intron Wnt6 + chr2L 7346895 intron Wnt6 + chr2L 7350463 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 D20-c2 155 chr2L 7358296 7358318 chr2L 7358376 7358398 6 80 2.0 3.5 2.8 1.6 102 chr2L 7358296 intergenic not near genes chr2L 7358347 intergenic not near genes chr2L 7358398 intergenic not near genes chr2L_6_7355001 chr2L_7355001 D20-c2 156 chr2L 7406949 7406959 chr2L 7407057 7407067 6 108 0.0 0.0 0.0 6.0 118 chr2L 7406949 intron CG5177 + chr2L 7407008 intron CG5177 + chr2L 7407067 intron CG5177 + chr2L_6_7405001 chr2L_7405001 D20-c2 157 chr2L 7410623 7410647 chr2L 7410860 7410884 4 237 3.0 4.5 3.8 0.8 261 chr2L 7410623 intergenic CG15818 + chr2L 7410754 intergenic CG15818 + chr2L 7410884 intergenic CG15818 + chr2L_4_7410001 chr2L_7410001 D20-c2 158 chr2L 7502746 7502770 chr2L 7502823 7502847 11 77 5.0 6.0 5.5 1.7 101 chr2L 7502746 intron RapGAP1 - chr2L 7502796 intron RapGAP1 - chr2L 7502847 intron RapGAP1 - chr2L_11_7500001 chr2L_7500001 D20-c2 159 chr2L 7572465 7572494 chr2L 7572616 7572645 9 151 2.5 1.0 1.8 3.2 180 chr2L 7572465 intron RapGAP1 - chr2L 7572555 intron RapGAP1 - chr2L 7572645 intron RapGAP1 - chr2L_9_7570001 chr2L_7570001 D20-c2 160 chr2L 7609530 7609751 chr2L 7609626 7609829 13 82 1.5 0.5 1.0 6.5 299 chr2L 7609530 intron CG6739 + chr2L 7609680 intron CG6739 + chr2L 7609829 intron CG6739 + chr2L_13_7605001 chr2L_7605001 D20-c2 161 chr2L 7775643 7775664 chr2L 7775736 7775757 9 93 2.5 4.0 3.2 2.1 114 chr2L 7775643 intergenic CG7179 - chr2L 7775700 intergenic CG7179 - chr2L 7775757 intergenic CG7179 - chr2L_9_7775001 chr2L_7775001 D20-c2 162 chr2L 7781253 7781259 chr2L 7781353 7781359 4 100 6.0 5.0 5.5 0.6 106 chr2L 7781253 3` UTR Uro + chr2L 7781306 3` UTR Uro + chr2L 7781359 3` UTR Uro + chr2L_4_7780001 chr2L_7780001 D20-c2 163 chr2L 7867563 7867602 chr2L 7867658 7867697 8 95 0.5 1.5 1.0 4.0 134 chr2L 7867563 intron Proc - chr2L 7867630 intron Proc - chr2L 7867697 intron Proc - chr2L_8_7865001 chr2L_7865001 D20-c2 164 chr2L 7905870 7905876 chr2L 7905957 7905972 4 100 1.5 3.0 2.2 1.2 102 chr2L 7905870 intron Snoo - chr2L 7905921 intron Snoo - chr2L 7905972 intron Snoo - chr2L_4_7905001 chr2L_7905001 D20-c2 165 chr2L 7959041 7959062 chr2L 7960453 7960474 pogo 10 1412 4.5 0.0 2.2 3.1 1433 chr2L 7959041 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960474 intron Snoo - chr2L_10_7955001 chr2L_7955001 D20-c2 166 chr2L 7977089 7977109 chr2L 7984065 7984085 297 5 6976 7.0 4.5 5.8 0.7 6996 chr2L 7977089 intron Snoo - chr2L 7980587 intron Snoo - chr2L 7984085 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 D20-c2 167 chr2L 8013615 8013631 chr2L 8018820 8018836 copia 4 5205 5.0 0.0 2.5 1.1 5221 chr2L 8013615 intron Tg + chr2L 8016226 intron Tg + chr2L 8018836 intron Tg + chr2L_4_8015001 chr2L_8015001 D20-c2 168 chr2L 8018829 8018838 chr2L 8023614 8023623 Doc 4 4785 0.5 2.0 1.2 1.8 4794 chr2L 8018829 intron Tg + chr2L 8021226 intron Tg + chr2L 8023623 intron Tg + chr2L_4_8020001 chr2L_8020001 D20-c2 169 chr2L 8044102 8044131 chr2L 8044182 8044211 13 80 5.5 7.5 6.5 1.7 109 chr2L 8044102 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044211 intron CG7466 + chr2L_13_8040001 chr2L_8040001 D20-c2 170 chr2L 8167143 8167179 chr2L 8167235 8167271 9 92 3.0 1.0 2.0 3.0 128 chr2L 8167143 intron Piezo + chr2L 8167207 intron Piezo + chr2L 8167271 intron Piezo + chr2L_9_8165001 chr2L_8165001 D20-c2 171 chr2L 8244730 8244748 chr2L 8244853 8244871 9 123 1.5 4.5 3.0 2.2 141 chr2L 8244730 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_9_8240001 chr2L_8240001 D20-c2 172 chr2L 8323701 8323732 chr2L 8323802 8323811 8 98 1.0 6.5 3.8 1.7 110 chr2L 8323701 intron CG7781 - chr2L 8323756 intron CG7781 - chr2L 8323811 intron CG7781 - chr2L_8_8320001 chr2L_8320001 D20-c2 173 chr2L 8336934 8336968 chr2L 8337014 8337048 6 80 0.0 4.0 2.0 2.0 114 chr2L 8336934 intergenic not near genes chr2L 8336991 intergenic not near genes chr2L 8337048 intergenic not near genes chr2L_6_8335001 chr2L_8335001 D20-c2 174 chr2L 8452423 8452442 chr2L 8461595 8461612 roo 7 9172 5.5 2.5 4.0 1.4 9189 chr2L 8452423 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461612 intron fu12 - chr2L_7_8455001 chr2L_8455001 D20-c2 175 chr2L 8484421 8484446 chr2L 8484671 8484703 12 258 4.5 4.0 4.2 2.3 282 chr2L 8484421 intron d + chr2L 8484562 intron d + chr2L 8484703 intron d + chr2L_12_8480001 chr2L_8480001 D20-c2 176 chr2L 8498205 8498228 chr2L 8498287 8498310 7 82 3.0 2.5 2.8 1.8 105 chr2L 8498205 intron Dh31 - chr2L 8498258 intron Dh31 - chr2L 8498310 intron Dh31 - chr2L_7_8495001 chr2L_8495001 D20-c2 177 chr2L 8553468 8553488 chr2L 8553616 8553636 11 148 2.0 2.5 2.2 3.4 168 chr2L 8553468 intron Sema-1a + chr2L 8553552 intron Sema-1a + chr2L 8553636 intron Sema-1a + chr2L_11_8550001 chr2L_8550001 D20-c2 178 chr2L 8594480 8594498 chr2L 8601535 8601553 297 6 7055 4.5 3.5 4.0 1.2 7073 chr2L 8594480 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598016 intron Sema-1a + chr2L 8601553 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 D20-c2 179 chr2L 8629262 8629294 chr2L 8629341 8629373 7 79 1.5 3.5 2.5 2.0 111 chr2L 8629262 intron Sema-1a + chr2L 8629318 intron Sema-1a + chr2L 8629373 intron Sema-1a + chr2L_7_8625001 chr2L_8625001 D20-c2 180 chr2L 8723113 8723140 chr2L 8731491 8731518 Tirant 13 8378 2.5 4.5 3.5 2.9 8405 chr2L 8723113 intron raw - chr2L 8727316 intron raw - chr2L 8731518 intron raw - chr2L_13_8725001 chr2L_8725001 D20-c2 181 chr2L 8759988 8759997 chr2L 8760130 8760139 4 142 4.5 0.0 2.2 1.2 151 chr2L 8759988 intergenic not near genes chr2L 8760064 intergenic not near genes chr2L 8760139 intergenic not near genes chr2L_4_8760001 chr2L_8760001 D20-c2 182 chr2L 8786572 8786578 chr2L 8786660 8786666 6 88 1.0 4.5 2.8 1.6 94 chr2L 8786572 intergenic not near genes chr2L 8786619 intergenic not near genes chr2L 8786666 intergenic not near genes chr2L_6_8785001 chr2L_8785001 D20-c2 183 chr2L 8788764 8788790 chr2L 8788856 8788882 7 92 1.0 2.5 1.8 2.5 118 chr2L 8788764 intergenic not near genes chr2L 8788823 intergenic not near genes chr2L 8788882 intergenic not near genes chr2L_7_8785001 chr2L_8785001 D20-c2 184 chr2L 8799806 8799827 chr2L 8799923 8799944 9 117 3.0 5.5 4.2 1.7 138 chr2L 8799806 intergenic not near genes chr2L 8799875 intergenic not near genes chr2L 8799944 intergenic not near genes chr2L_9_8795001 chr2L_8795001 D20-c2 185 chr2L 8902447 8902470 chr2L 8902595 8902618 8 148 4.5 1.5 3.0 2.0 171 chr2L 8902447 intron CG34398 + chr2L 8902532 intron CG34398 + chr2L 8902618 intron CG34398 + chr2L_8_8900001 chr2L_8900001 D20-c2 186 chr2L 8910725 8910742 chr2L 8910817 8910834 8 91 4.5 0.5 2.5 2.3 109 chr2L 8910725 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910834 intron CG34398 + chr2L_8_8910001 chr2L_8910001 D20-c2 187 chr2L 8946706 8946735 chr2L 8946816 8946845 11 110 1.5 4.5 3.0 2.8 139 chr2L 8946706 intron C1GalTA - chr2L 8946776 intron C1GalTA - chr2L 8946845 intron C1GalTA - chr2L_11_8945001 chr2L_8945001 D20-c2 188 chr2L 8976227 8976253 chr2L 8976318 8976346 5 92 0.5 0.5 0.5 3.3 119 chr2L 8976227 intergenic not near genes chr2L 8976286 intergenic not near genes chr2L 8976346 intergenic not near genes chr2L_5_8975001 chr2L_8975001 D20-c2 189 chr2L 9000277 9000309 chr2L 9007788 9007820 roo 10 7510 6.0 2.0 4.0 2.0 7543 chr2L 9000277 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_10_9000001 chr2L_9000001 D20-c2 190 chr2L 9025816 9025854 chr2L 9025901 9025939 16 85 4.0 3.5 3.8 3.3 123 chr2L 9025816 intron,3` UTR CG9582 -,CR44352 - chr2L 9025878 intron,3` UTR CG9582 -,CR44352 - chr2L 9025939 intron,3` UTR CG9582 -,CR44352 - chr2L_16_9025001 chr2L_9025001 D20-c2 191 chr2L 9053409 9053428 chr2L 9053645 9053664 4 236 3.0 0.0 1.5 1.6 255 chr2L 9053409 exon CG31708 - chr2L 9053536 intron CG31708 - chr2L 9053664 intron CG31708 - chr2L_4_9050001 chr2L_9050001 D20-c2 192 chr2L 9084336 9084340 chr2L 16217660 16217660 25 7133321 13.5 15.5 14.5 1.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_25_12650001 chr2L_12650001 D20-c2 193 chr2L 9113802 9113809 chr2L 9113913 9113920 4 111 2.0 0.0 1.0 2.0 118 chr2L 9113802 intergenic not near genes chr2L 9113861 intergenic not near genes chr2L 9113920 intergenic not near genes chr2L_4_9110001 chr2L_9110001 D20-c2 194 chr2L 9217969 9217994 chr2L 9222757 9222782 Doc 12 4788 4.0 1.5 2.8 3.2 4813 chr2L 9217969 intron tai + chr2L 9220376 intron tai + chr2L 9222782 intron tai + chr2L_12_9220001 chr2L_9220001 D20-c2 195 chr2L 9227225 9227245 chr2L 9227309 9227329 5 84 2.5 1.5 2.0 1.7 104 chr2L 9227225 intron tai + chr2L 9227277 intron tai + chr2L 9227329 intron tai + chr2L_5_9225001 chr2L_9225001 D20-c2 196 chr2L 9251143 9251167 chr2L 9251241 9251264 9 98 5.5 1.5 3.5 2.0 121 chr2L 9251143 intergenic aust -,borr - chr2L 9251204 intergenic aust -,borr - chr2L 9251264 intergenic borr -,aust - chr2L_9_9250001 chr2L_9250001 D20-c2 197 chr2L 9262109 9262140 chr2L 9262215 9262233 13 105 3.0 2.0 2.5 3.7 124 chr2L 9262109 intron,3` UTR Ggamma30A +,CR45262 - chr2L 9262171 intron,3` UTR Ggamma30A +,CR45262 - chr2L 9262233 intron,3` UTR Ggamma30A +,CR45262 - chr2L_13_9260001 chr2L_9260001 D20-c2 198 chr2L 9280006 9280024 chr2L 9280101 9280119 4 95 0.0 2.0 1.0 2.0 113 chr2L 9280006 intron Ggamma30A + chr2L 9280062 intron Ggamma30A + chr2L 9280119 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 D20-c2 199 chr2L 9297377 9297402 chr2L 9297455 9297480 8 78 3.5 2.5 3.0 2.0 103 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297480 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 D20-c2 200 chr2L 9380247 9380252 chr2L 9380343 9380348 4 96 8.0 2.5 5.2 0.6 101 chr2L 9380247 exon Shawl - chr2L 9380298 intron Shawl - chr2L 9380348 intron Shawl - chr2L_4_9380001 chr2L_9380001 D20-c2 201 chr2L 9387252 9387265 chr2L 9387351 9387364 4 99 1.5 2.5 2.0 1.3 112 chr2L 9387252 intron Shawl - chr2L 9387308 intron Shawl - chr2L 9387364 intron Shawl - chr2L_4_9385001 chr2L_9385001 D20-c2 202 chr2L 9454981 9455004 chr2L 9455084 9455107 8 103 2.5 3.5 3.0 2.0 126 chr2L 9454981 intron numb + chr2L 9455044 intron numb + chr2L 9455107 intron numb + chr2L_8_9455001 chr2L_9455001 D20-c2 203 chr2L 9456930 9456961 chr2L 9457012 9457043 10 82 0.5 3.5 2.0 3.3 113 chr2L 9456930 intron numb + chr2L 9456986 intron numb + chr2L 9457043 intron numb + chr2L_10_9455001 chr2L_9455001 D20-c2 204 chr2L 9474796 9474807 chr2L 9474891 9474902 4 95 1.5 2.0 1.8 1.4 106 chr2L 9474796 intergenic not near genes chr2L 9474849 intergenic not near genes chr2L 9474902 intergenic not near genes chr2L_4_9470001 chr2L_9470001 D20-c2 205 chr2L 9493250 9493271 chr2L 9493335 9493356 10 85 6.0 2.5 4.2 1.9 106 chr2L 9493250 intron Gdi - chr2L 9493303 intron Gdi - chr2L 9493356 intron Gdi - chr2L_10_9490001 chr2L_9490001 D20-c2 206 chr2L 9619500 9619522 chr2L 9619838 9619860 4 338 1.5 3.5 2.5 1.1 360 chr2L 9619500 intron GlcAT-S + chr2L 9619680 intron GlcAT-S + chr2L 9619860 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 D20-c2 207 chr2L 9664908 9664942 chr2L 9665004 9665038 14 96 4.0 1.0 2.5 4.0 130 chr2L 9664908 intergenic not near genes chr2L 9664973 intergenic not near genes chr2L 9665038 intergenic not near genes chr2L_14_9660001 chr2L_9660001 D20-c2 208 chr2L 9730974 9731003 chr2L 9731058 9731087 10 84 4.5 2.5 3.5 2.2 113 chr2L 9730974 intron Nckx30C - chr2L 9731030 intron Nckx30C - chr2L 9731087 intron Nckx30C - chr2L_10_9730001 chr2L_9730001 D20-c2 209 chr2L 9767904 9767935 chr2L 9767984 9768015 9 80 1.5 4.5 3.0 2.2 111 chr2L 9767904 intron,exon ppk18 -,CG4017 + chr2L 9767960 intron,exon ppk18 -,CG4017 + chr2L 9768015 intron,exon ppk18 -,CG4017 + chr2L_9_9765001 chr2L_9765001 D20-c2 210 chr2L 9775981 9776015 chr2L 9776064 9776098 5 83 1.5 1.5 1.5 2.0 117 chr2L 9775981 intergenic not near genes chr2L 9776040 intergenic not near genes chr2L 9776098 intergenic not near genes chr2L_5_9775001 chr2L_9775001 D20-c2 211 chr2L 9837434 9837446 chr2L 9837513 9837525 6 79 2.0 3.0 2.5 1.7 91 chr2L 9837434 intron nAChRalpha6 - chr2L 9837480 intron nAChRalpha6 - chr2L 9837525 intron nAChRalpha6 - chr2L_6_9835001 chr2L_9835001 D20-c2 212 chr2L 9871524 9871545 chr2L 9871611 9871632 8 86 6.0 6.5 6.2 1.1 108 chr2L 9871524 intron nAChRalpha6 - chr2L 9871578 intron nAChRalpha6 - chr2L 9871632 intron nAChRalpha6 - chr2L_8_9870001 chr2L_9870001 D20-c2 213 chr2L 9873762 9873793 chr2L 9873859 9873889 9 96 8.5 9.0 8.8 0.9 127 chr2L 9873762 intron nAChRalpha6 - chr2L 9873826 intron nAChRalpha6 - chr2L 9873889 intron nAChRalpha6 - chr2L_9_9870001 chr2L_9870001 D20-c2 214 chr2L 9973723 9973759 chr2L 9980843 9980879 HMS-Beagle 16 7119 6.0 5.0 5.5 2.5 7156 chr2L 9973723 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980879 intergenic not near genes chr2L_16_9975001 chr2L_9975001 D20-c2 215 chr2L 9986348 9986383 chr2L 9986444 9986478 11 96 4.5 3.0 3.8 2.3 130 chr2L 9986348 intron bib + chr2L 9986413 intron bib + chr2L 9986478 intron bib + chr2L_11_9985001 chr2L_9985001 D20-c2 216 chr2L 10039110 10039141 chr2L 10039332 10039363 9 222 22.5 17.0 19.8 0.4 253 chr2L 10039110 intergenic obst-B + chr2L 10039236 intergenic obst-B + chr2L 10039363 intergenic obst-B + chr2L_9_10035001 chr2L_10035001 D20-c2 217 chr2L 10050388 10050416 chr2L 10050470 10050501 4 84 15.5 22.0 18.8 0.2 113 chr2L 10050388 exon CG33301 + chr2L 10050444 exon CG33301 + chr2L 10050501 exon CG33301 + chr2L_4_10050001 chr2L_10050001 D20-c2 218 chr2L 10051724 10051748 chr2L 10051810 10051834 16 86 9.0 4.0 6.5 2.1 110 chr2L 10051724 5` UTR CR44874 + chr2L 10051779 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_16_10050001 chr2L_10050001 D20-c2 219 chr2L 10153199 10153233 chr2L 10153279 10153313 16 80 7.0 2.5 4.8 2.8 114 chr2L 10153199 intron,exon CG44153 -,CG4839 + chr2L 10153256 intron,intron CG44153 -,CG4839 + chr2L 10153313 intron,intron CG44153 -,CG4839 + chr2L_16_10150001 chr2L_10150001 D20-c2 220 chr2L 10156321 10156354 chr2L 10163790 10163825 blood 15 7471 1.0 2.5 1.8 5.4 7504 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160073 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_15_10160001 chr2L_10160001 D20-c2 221 chr2L 10180583 10180603 chr2L 10180671 10180691 9 88 3.0 0.0 1.5 3.6 108 chr2L 10180583 intergenic CG44153 - chr2L 10180637 intergenic CG44153 - chr2L 10180691 intergenic CG44153 - chr2L_9_10180001 chr2L_10180001 D20-c2 222 chr2L 10421296 10421317 chr2L 10421386 10421390 8 85 8.0 0.5 4.2 1.5 94 chr2L 10421296 exon pie - chr2L 10421343 exon pie - chr2L 10421390 exon pie - chr2L_8_10420001 chr2L_10420001 D20-c2 223 chr2L 10475999 10476001 chr2L 20875591 20875593 4 10399592 10.5 11.0 10.8 0.3 10399594 chr2L 10475999 intergenic not near genes chr2L 15675796 intron,exon,exon CG4587 -,CG43923 -,CG43924 - chr2L 20875593 intron,intron CG43739 -,sky - chr2L_4_15675001 chr2L_15675001 D20-c2 224 chr2L 10495307 10495317 chr2L 10495385 10495395 5 78 4.0 7.0 5.5 0.8 88 chr2L 10495307 intron Myo31DF - chr2L 10495351 intron Myo31DF - chr2L 10495395 intron Myo31DF - chr2L_5_10495001 chr2L_10495001 D20-c2 225 chr2L 10515359 10515389 chr2L 10515453 10515483 8 94 2.0 1.5 1.8 2.9 124 chr2L 10515359 intron,intron CG45083 -,Fatp - chr2L 10515421 intron,intron CG45083 -,Fatp - chr2L 10515483 intron,intron CG45083 -,Fatp - chr2L_8_10515001 chr2L_10515001 D20-c2 226 chr2L 10531609 10531623 chr2L 10531702 10531716 4 93 0.0 1.5 0.8 2.2 107 chr2L 10531609 3` UTR Lip4 + chr2L 10531662 3` UTR Lip4 + chr2L 10531716 3` UTR Lip4 + chr2L_4_10530001 chr2L_10530001 D20-c2 227 chr2L 10563911 10563941 chr2L 10564005 10564032 6 92 3.0 2.5 2.8 1.6 121 chr2L 10563911 intron Trim9 + chr2L 10563972 intron Trim9 + chr2L 10564032 intron Trim9 + chr2L_6_10560001 chr2L_10560001 D20-c2 228 chr2L 10580794 10580823 chr2L 10580876 10580905 12 82 3.5 3.5 3.5 2.7 111 chr2L 10580794 intron Trim9 + chr2L 10580850 intron Trim9 + chr2L 10580905 intron Trim9 + chr2L_12_10580001 chr2L_10580001 D20-c2 229 chr2L 10592843 10592869 chr2L 10600506 10600532 opus 10 7663 2.0 2.0 2.0 3.3 7689 chr2L 10592843 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600532 intron Trim9 + chr2L_10_10595001 chr2L_10595001 D20-c2 230 chr2L 10640638 10640668 chr2L 10640728 10640757 10 90 4.0 1.5 2.8 2.6 119 chr2L 10640638 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640757 exon CG31872 + chr2L_10_10640001 chr2L_10640001 D20-c2 231 chr2L 10673740 10673768 chr2L 10673823 10673851 12 83 1.5 1.5 1.5 4.8 111 chr2L 10673740 intergenic not near genes chr2L 10673796 intergenic not near genes chr2L 10673851 intergenic not near genes chr2L_12_10670001 chr2L_10670001 D20-c2 232 chr2L 10688540 10688573 chr2L 10688617 10688650 9 77 0.5 1.5 1.0 4.5 110 chr2L 10688540 intergenic CG7294 - chr2L 10688595 intergenic CG7294 - chr2L 10688650 intergenic CG7294 - chr2L_9_10685001 chr2L_10685001 D20-c2 233 chr2L 10701706 10701742 chr2L 10701787 10701818 8 80 2.5 1.0 1.8 2.9 112 chr2L 10701706 intergenic Lip1 -,Lip2 - chr2L 10701762 intergenic Lip2 -,Lip1 - chr2L 10701818 intergenic Lip2 -,Lip1 - chr2L_8_10700001 chr2L_10700001 D20-c2 234 chr2L 10787997 10788027 chr2L 10788074 10788104 4 77 0.0 1.0 0.5 2.7 107 chr2L 10787997 intron CG31869 - chr2L 10788050 intron CG31869 - chr2L 10788104 intron CG31869 - chr2L_4_10785001 chr2L_10785001 D20-c2 235 chr2L 10862839 10862874 chr2L 10864454 10864489 Rt1c 14 1614 2.5 3.0 2.8 3.7 1650 chr2L 10862839 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_14_10860001 chr2L_10860001 D20-c2 236 chr2L 10914798 10914834 chr2L 10914890 10914926 9 91 3.5 0.5 2.0 3.0 128 chr2L 10914798 intergenic not near genes chr2L 10914862 intergenic not near genes chr2L 10914926 intergenic not near genes chr2L_9_10910001 chr2L_10910001 D20-c2 237 chr2L 10945072 10945084 chr2L 10945332 10945344 5 260 5.0 3.5 4.2 1.0 272 chr2L 10945072 intron dpr2 - chr2L 10945208 intron dpr2 - chr2L 10945344 intron dpr2 - chr2L_5_10945001 chr2L_10945001 D20-c2 238 chr2L 10946952 10946975 chr2L 10956160 10956190 roo 16 9215 4.0 7.5 5.8 2.4 9238 chr2L 10946952 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_16_10950001 chr2L_10950001 D20-c2 239 chr2L 11055064 11055075 chr2L 11055150 11055161 4 86 1.0 2.5 1.8 1.4 97 chr2L 11055064 intron Samuel - chr2L 11055112 intron Samuel - chr2L 11055161 intron Samuel - chr2L_4_11055001 chr2L_11055001 D20-c2 240 chr2L 11167478 11167508 chr2L 11167570 11167591 7 90 3.0 3.0 3.0 1.8 113 chr2L 11167478 intron Ca-beta - chr2L 11167534 intron Ca-beta - chr2L 11167591 intron Ca-beta - chr2L_7_11165001 chr2L_11165001 D20-c2 241 chr2L 11174644 11174658 chr2L 11174715 11174736 8 77 2.5 4.5 3.5 1.8 92 chr2L 11174644 intron Ca-beta - chr2L 11174690 intron Ca-beta - chr2L 11174736 intron Ca-beta - chr2L_8_11170001 chr2L_11170001 D20-c2 242 chr2L 11224067 11224091 chr2L 11224179 11224203 8 112 0.5 3.5 2.0 2.7 136 chr2L 11224067 intron ab + chr2L 11224135 intron ab + chr2L 11224203 intron ab + chr2L_8_11220001 chr2L_11220001 D20-c2 243 chr2L 11248568 11248588 chr2L 11248652 11248660 11 83 5.0 2.0 3.5 2.4 92 chr2L 11248568 intron ab + chr2L 11248614 intron ab + chr2L 11248660 intron ab + chr2L_11_11245001 chr2L_11245001 D20-c2 244 chr2L 11296013 11296023 chr2L 11296205 11296215 5 192 1.5 0.0 0.8 2.8 202 chr2L 11296013 intergenic not near genes chr2L 11296114 intergenic not near genes chr2L 11296215 intergenic not near genes chr2L_5_11295001 chr2L_11295001 D20-c2 245 chr2L 11378579 11378600 chr2L 11378675 11378696 9 96 4.5 3.5 4.0 1.8 117 chr2L 11378579 intergenic not near genes chr2L 11378638 intergenic not near genes chr2L 11378696 intergenic not near genes chr2L_9_11375001 chr2L_11375001 D20-c2 246 chr2L 11378601 11378615 chr2L 11378672 11378711 8 91 2.5 3.5 3.0 2.0 110 chr2L 11378601 intergenic not near genes chr2L 11378656 intergenic not near genes chr2L 11378711 intergenic not near genes chr2L_8_11375001 chr2L_11375001 D20-c2 247 chr2L 11379947 11379952 chr2L 11380030 11380035 5 83 7.0 0.0 3.5 1.1 88 chr2L 11379947 intergenic not near genes chr2L 11379991 intergenic not near genes chr2L 11380035 intergenic not near genes chr2L_5_11375001 chr2L_11375001 D20-c2 248 chr2L 11380610 11380882 chr2L 11380688 11380986 17 92 0.0 2.0 1.0 8.5 376 chr2L 11380610 intergenic not near genes chr2L 11380798 intergenic not near genes chr2L 11380986 intergenic not near genes chr2L_17_11380001 chr2L_11380001 D20-c2 249 chr2L 11450123 11450153 chr2L 11450210 11450236 7 84 0.0 3.0 1.5 2.8 113 chr2L 11450123 intergenic not near genes chr2L 11450180 intergenic not near genes chr2L 11450236 intergenic not near genes chr2L_7_11450001 chr2L_11450001 D20-c2 250 chr2L 11458942 11458976 chr2L 11459059 11459093 4 117 2.0 0.5 1.2 1.8 151 chr2L 11458942 intergenic not near genes chr2L 11459018 intergenic not near genes chr2L 11459093 intergenic not near genes chr2L_4_11455001 chr2L_11455001 D20-c2 251 chr2L 11476267 11476286 chr2L 11476348 11476367 4 81 0.0 6.5 3.2 1.0 100 chr2L 11476267 intergenic not near genes chr2L 11476317 intergenic not near genes chr2L 11476367 intergenic not near genes chr2L_4_11475001 chr2L_11475001 D20-c2 252 chr2L 11491127 11491157 chr2L 11491208 11491239 14 82 2.5 2.0 2.2 4.4 112 chr2L 11491127 intergenic not near genes chr2L 11491183 intergenic not near genes chr2L 11491239 intergenic not near genes chr2L_14_11490001 chr2L_11490001 D20-c2 253 chr2L 11537753 11537786 chr2L 11537871 11537904 8 118 4.0 2.0 3.0 2.0 151 chr2L 11537753 intergenic not near genes chr2L 11537828 intergenic not near genes chr2L 11537904 intergenic not near genes chr2L_8_11535001 chr2L_11535001 D20-c2 254 chr2L 11540590 11540611 chr2L 11547993 11548014 Tabor 5 7403 3.0 3.0 3.0 1.2 7424 chr2L 11540590 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548014 intergenic not near genes chr2L_5_11540001 chr2L_11540001 D20-c2 255 chr2L 11563645 11563662 chr2L 11568850 11568867 copia 6 5205 2.5 4.0 3.2 1.4 5222 chr2L 11563645 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568867 intergenic not near genes chr2L_6_11565001 chr2L_11565001 D20-c2 256 chr2L 11614053 11614081 chr2L 11615549 11615577 hopper2 9 1494 2.0 3.0 2.5 2.6 1524 chr2L 11614053 intron kek2 + chr2L 11614815 intron kek2 + chr2L 11615577 intron kek2 + chr2L_9_11610001 chr2L_11610001 D20-c2 257 chr2L 11627476 11627486 chr2L 11628230 11628240 6 754 0.0 0.0 0.0 6.0 764 chr2L 11627476 intergenic not near genes chr2L 11627858 intergenic not near genes chr2L 11628240 intergenic not near genes chr2L_6_11625001 chr2L_11625001 D20-c2 258 chr2L 11657971 11657997 chr2L 11658057 11658083 5 86 3.0 2.0 2.5 1.4 112 chr2L 11657971 3` UTR CG43167 + chr2L 11658027 intergenic CG43167 + chr2L 11658083 intergenic CG43167 + chr2L_5_11655001 chr2L_11655001 D20-c2 259 chr2L 11672143 11672158 chr2L 11672251 11672266 6 108 1.5 2.5 2.0 2.0 123 chr2L 11672143 intergenic not near genes chr2L 11672204 intergenic not near genes chr2L 11672266 intergenic not near genes chr2L_6_11670001 chr2L_11670001 D20-c2 260 chr2L 11684549 11684566 chr2L 11684627 11684644 9 77 7.0 3.0 5.0 1.5 95 chr2L 11684549 intergenic not near genes chr2L 11684596 intergenic not near genes chr2L 11684644 intergenic not near genes chr2L_9_11680001 chr2L_11680001 D20-c2 261 chr2L 11713504 11713537 chr2L 11720973 11721006 blood 8 7468 2.5 1.5 2.0 2.7 7502 chr2L 11713504 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 D20-c2 262 chr2L 11750325 11750340 chr2L 11750612 11750627 7 287 3.0 2.0 2.5 2.0 302 chr2L 11750325 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750627 intergenic not near genes chr2L_7_11750001 chr2L_11750001 D20-c2 263 chr2L 11820429 11820464 chr2L 11820511 11820546 11 82 2.0 1.5 1.8 3.9 117 chr2L 11820429 intron Pde1c - chr2L 11820488 intron Pde1c - chr2L 11820546 intron Pde1c - chr2L_11_11820001 chr2L_11820001 D20-c2 264 chr2L 11825706 11825712 chr2L 11825786 11825792 7 80 4.5 0.0 2.2 2.2 86 chr2L 11825706 intron Pde1c - chr2L 11825749 intron Pde1c - chr2L 11825792 intron Pde1c - chr2L_7_11825001 chr2L_11825001 D20-c2 265 chr2L 11844185 11844216 chr2L 11844268 11844299 13 83 3.0 2.5 2.8 3.4 114 chr2L 11844185 intron Pde1c - chr2L 11844242 intron Pde1c - chr2L 11844299 intron Pde1c - chr2L_13_11840001 chr2L_11840001 D20-c2 266 chr2L 11892545 11892817 chr2L 11892635 11892910 15 93 2.0 3.0 2.5 4.3 365 chr2L 11892545 intron Pde1c - chr2L 11892728 intron Pde1c - chr2L 11892910 intron Pde1c - chr2L_15_11890001 chr2L_11890001 D20-c2 267 chr2L 11913303 11913320 chr2L 11913405 11913422 6 102 5.5 2.0 3.8 1.2 119 chr2L 11913303 intron Pde1c - chr2L 11913362 intron Pde1c - chr2L 11913422 intron Pde1c - chr2L_6_11910001 chr2L_11910001 D20-c2 268 chr2L 11976090 11976115 chr2L 11976168 11976193 6 78 1.5 1.5 1.5 2.4 103 chr2L 11976090 intergenic not near genes chr2L 11976142 intergenic not near genes chr2L 11976193 intergenic not near genes chr2L_6_11975001 chr2L_11975001 D20-c2 269 chr2L 12012536 12012549 chr2L 12012669 12012690 9 133 37.5 36.5 37.0 0.2 154 chr2L 12012536 intergenic not near genes chr2L 12012613 intergenic not near genes chr2L 12012690 intergenic not near genes chr2L_9_12010001 chr2L_12010001 D20-c2 270 chr2L 12112031 12112049 chr2L 12112143 12112161 7 112 0.0 2.5 1.2 3.2 130 chr2L 12112031 3` UTR Phae2 + chr2L 12112096 3` UTR Phae2 + chr2L 12112161 3` UTR Phae2 + chr2L_7_12110001 chr2L_12110001 D20-c2 271 chr2L 12154022 12154049 chr2L 12154498 12154525 13 476 6.0 4.0 5.0 2.2 503 chr2L 12154022 intron CG31760 + chr2L 12154274 intron CG31760 + chr2L 12154525 intron CG31760 + chr2L_13_12150001 chr2L_12150001 D20-c2 272 chr2L 12234033 12234067 chr2L 12234129 12234163 7 96 3.0 2.5 2.8 1.8 130 chr2L 12234033 intron aret + chr2L 12234098 intron aret + chr2L 12234163 intron aret + chr2L_7_12230001 chr2L_12230001 D20-c2 273 chr2L 12315655 12315684 chr2L 12316121 12316150 9 466 2.5 3.0 2.8 2.4 495 chr2L 12315655 intergenic CR45282 - chr2L 12315902 3` UTR CR45282 - chr2L 12316150 intergenic CR45282 -,CR45283 - chr2L_9_12315001 chr2L_12315001 D20-c2 274 chr2L 12322765 12322794 chr2L 12322842 12322871 13 77 3.0 3.0 3.0 3.2 106 chr2L 12322765 intergenic not near genes chr2L 12322818 intergenic not near genes chr2L 12322871 intergenic not near genes chr2L_13_12320001 chr2L_12320001 D20-c2 275 chr2L 12345407 12345421 chr2L 12345486 12345500 6 79 4.0 3.5 3.8 1.2 93 chr2L 12345407 intron bru-2 + chr2L 12345454 intron bru-2 + chr2L 12345500 intron bru-2 + chr2L_6_12345001 chr2L_12345001 D20-c2 276 chr2L 12418424 12418437 chr2L 12418508 12418510 5 82 4.5 3.0 3.8 1.0 86 chr2L 12418424 intron vir-1 - chr2L 12418467 intron vir-1 - chr2L 12418510 intron vir-1 - chr2L_5_12415001 chr2L_12415001 D20-c2 277 chr2L 12426131 12426164 chr2L 12426215 12426248 11 84 2.5 4.5 3.5 2.4 117 chr2L 12426131 exon CG6405 + chr2L 12426190 exon CG6405 + chr2L 12426248 exon CG6405 + chr2L_11_12425001 chr2L_12425001 D20-c2 278 chr2L 12487884 12487918 chr2L 12487966 12488000 16 81 4.5 4.0 4.2 3.1 116 chr2L 12487884 intron bun - chr2L 12487942 intron bun - chr2L 12488000 intron bun - chr2L_16_12485001 chr2L_12485001 D20-c2 279 chr2L 12529233 12529266 chr2L 12529386 12529419 7 153 1.0 4.0 2.5 2.0 186 chr2L 12529233 intron bun - chr2L 12529326 intron bun - chr2L 12529419 intron bun - chr2L_7_12525001 chr2L_12525001 D20-c2 280 chr2L 12558324 12558346 chr2L 12565454 12565476 HMS-Beagle 6 7130 1.0 2.0 1.5 2.4 7152 chr2L 12558324 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565476 intergenic not near genes chr2L_6_12560001 chr2L_12560001 D20-c2 281 chr2L 12653787 12653800 chr2L 12653905 12653918 6 118 4.0 2.5 3.2 1.4 131 chr2L 12653787 intergenic not near genes chr2L 12653852 intergenic not near genes chr2L 12653918 intergenic not near genes chr2L_6_12650001 chr2L_12650001 D20-c2 282 chr2L 12728925 12728945 chr2L 12729165 12729185 pogo 4 240 3.5 2.5 3.0 1.0 260 chr2L 12728925 intron MRP + chr2L 12729055 intron MRP + chr2L 12729185 exon MRP + chr2L_4_12725001 chr2L_12725001 D20-c2 283 chr2L 12731059 12731089 chr2L 12735827 12735857 F-element 6 4768 2.5 2.5 2.5 1.7 4798 chr2L 12731059 intron MRP + chr2L 12733458 intron MRP + chr2L 12735857 intron MRP + chr2L_6_12730001 chr2L_12730001 D20-c2 284 chr2L 12739172 12739203 chr2L 12743954 12743985 Doc 14 4782 4.0 4.5 4.2 2.7 4813 chr2L 12739172 exon MRP + chr2L 12741578 intron MRP + chr2L 12743985 exon MRP + chr2L_14_12740001 chr2L_12740001 D20-c2 285 chr2L 12751315 12751338 chr2L 12751399 12751422 4 84 3.5 4.5 4.0 0.8 107 chr2L 12751315 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751422 intergenic not near genes chr2L_4_12750001 chr2L_12750001 D20-c2 286 chr2L 12766764 12766776 chr2L 12766843 12766855 4 79 2.0 4.0 3.0 1.0 91 chr2L 12766764 intergenic not near genes chr2L 12766810 intergenic not near genes chr2L 12766855 intergenic not near genes chr2L_4_12765001 chr2L_12765001 D20-c2 287 chr2L 12781800 12781812 chr2L 12789251 12789263 Quasimodo 5 7451 8.0 4.5 6.2 0.7 7463 chr2L 12781800 intergenic not near genes chr2L 12785532 intergenic not near genes chr2L 12789263 intergenic not near genes chr2L_5_12785001 chr2L_12785001 D20-c2 288 chr2L 12791601 12791623 chr2L 12795277 12795299 F-element 7 3673 2.0 2.5 2.2 2.2 3698 chr2L 12791601 intergenic not near genes chr2L 12793450 intergenic not near genes chr2L 12795299 intergenic not near genes chr2L_7_12790001 chr2L_12790001 D20-c2 289 chr2L 12811988 12812011 chr2L 12812097 12812120 11 109 4.0 3.0 3.5 2.4 132 chr2L 12811988 intergenic not near genes chr2L 12812054 intergenic not near genes chr2L 12812120 intergenic not near genes chr2L_11_12810001 chr2L_12810001 D20-c2 290 chr2L 12846883 12846908 chr2L 12846983 12847008 13 100 3.5 7.0 5.2 2.1 125 chr2L 12846883 intergenic not near genes chr2L 12846946 intergenic not near genes chr2L 12847008 intergenic not near genes chr2L_13_12845001 chr2L_12845001 D20-c2 291 chr2L 12861693 12861727 chr2L 12863161 12863195 hobo 10 1468 1.5 4.5 3.0 2.5 1502 chr2L 12861693 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_10_12860001 chr2L_12860001 D20-c2 292 chr2L 12889031 12889060 chr2L 12889115 12889144 12 84 6.0 4.5 5.2 1.9 113 chr2L 12889031 intergenic not near genes chr2L 12889088 intergenic not near genes chr2L 12889144 intergenic not near genes chr2L_12_12885001 chr2L_12885001 D20-c2 293 chr2L 12894016 12894054 chr2L 12895484 12895515 hobo 19 1466 4.0 3.0 3.5 4.2 1499 chr2L 12894016 intergenic not near genes chr2L 12894766 intergenic not near genes chr2L 12895515 intergenic not near genes chr2L_19_12890001 chr2L_12890001 D20-c2 294 chr2L 12905479 12905509 chr2L 12905564 12905594 8 85 0.5 1.5 1.0 4.0 115 chr2L 12905479 intergenic not near genes chr2L 12905536 intergenic not near genes chr2L 12905594 intergenic not near genes chr2L_8_12905001 chr2L_12905001 D20-c2 295 chr2L 12933848 12933881 chr2L 12941316 12941349 blood 15 7468 5.5 2.0 3.8 3.1 7501 chr2L 12933848 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_15_12935001 chr2L_12935001 D20-c2 296 chr2L 12949256 12949284 chr2L 12949350 12949378 12 94 4.0 8.0 6.0 1.7 122 chr2L 12949256 intergenic not near genes chr2L 12949317 intergenic not near genes chr2L 12949378 intergenic not near genes chr2L_12_12945001 chr2L_12945001 D20-c2 297 chr2L 12955880 12955903 chr2L 12956081 12956104 13 200 5.5 3.0 4.2 2.5 224 chr2L 12955880 intergenic not near genes chr2L 12955992 intergenic not near genes chr2L 12956104 intergenic not near genes chr2L_13_12955001 chr2L_12955001 D20-c2 298 chr2L 13069271 13069291 chr2L 13069393 13069413 4 122 5.0 6.5 5.8 0.6 142 chr2L 13069271 intergenic not near genes chr2L 13069342 intergenic not near genes chr2L 13069413 intergenic not near genes chr2L_4_13065001 chr2L_13065001 D20-c2 299 chr2L 13109458 13109474 chr2L 13109587 13109603 5 129 9.5 11.0 10.2 0.4 145 chr2L 13109458 3` UTR CG5142 + chr2L 13109530 intergenic CG5142 + chr2L 13109603 intergenic CG5142 + chr2L_5_13105001 chr2L_13105001 D20-c2 300 chr2L 13152227 13152254 chr2L 13152306 13152333 6 79 12.5 11.0 11.8 0.5 106 chr2L 13152227 intergenic not near genes chr2L 13152280 intergenic not near genes chr2L 13152333 intergenic not near genes chr2L_6_13150001 chr2L_13150001 D20-c2 301 chr2L 13154111 13154123 chr2L 13154190 13154202 6 79 3.0 0.5 1.8 2.1 91 chr2L 13154111 intergenic not near genes chr2L 13154156 intergenic not near genes chr2L 13154202 intergenic not near genes chr2L_6_13150001 chr2L_13150001 D20-c2 302 chr2L 13215380 13215412 chr2L 13215656 13215688 6 276 6.0 4.0 5.0 1.0 308 chr2L 13215380 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215534 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215688 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_6_13215001 chr2L_13215001 D20-c2 303 chr2L 13266376 13266412 chr2L 13266465 13266501 6 89 7.5 6.5 7.0 0.8 125 chr2L 13266376 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266501 intron CG44085 + chr2L_6_13265001 chr2L_13265001 D20-c2 304 chr2L 13351819 13351851 chr2L 13351906 13351938 10 87 13.0 14.5 13.8 0.7 119 chr2L 13351819 exon CG9395 - chr2L 13351878 intron CG9395 - chr2L 13351938 exon CG9395 - chr2L_10_13350001 chr2L_13350001 D20-c2 305 chr2L 13360881 13360898 chr2L 13360978 13360995 5 97 7.5 9.0 8.2 0.5 114 chr2L 13360881 intron CG9377 - chr2L 13360938 intron CG9377 - chr2L 13360995 intron CG9377 - chr2L_5_13360001 chr2L_13360001 D20-c2 306 chr2L 13374323 13374355 chr2L 13374411 13374443 10 88 11.0 13.5 12.2 0.8 120 chr2L 13374323 5` UTR CG6565 + chr2L 13374383 5` UTR CG6565 + chr2L 13374443 5` UTR CG6565 + chr2L_10_13370001 chr2L_13370001 D20-c2 307 chr2L 13405649 13405678 chr2L 13410447 13410476 Doc 15 4798 7.0 1.5 4.2 2.9 4827 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_15_13405001 chr2L_13405001 D20-c2 308 chr2L 13449461 13449489 chr2L 13456898 13456926 Quasimodo 9 7437 4.5 4.5 4.5 1.6 7465 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456926 intron CG42784 + chr2L_9_13450001 chr2L_13450001 D20-c2 309 chr2L 13481449 13481475 chr2L 13482057 13482083 jockey 11 608 6.0 8.5 7.2 1.3 634 chr2L 13481449 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482083 intron CG42784 + chr2L_11_13480001 chr2L_13480001 D20-c2 310 chr2L 13492343 13492379 chr2L 13541839 13541875 7 49496 31.5 36.0 33.8 0.2 49532 chr2L 13492343 intron CG42784 + chr2L 13517109 intron B4 - chr2L 13541875 intron,exon B4 -,CG9263 - chr2L_7_13515001 chr2L_13515001 D20-c2 311 chr2L 13690722 13690753 chr2L 13693104 13693135 10 2382 11.0 15.5 13.2 0.7 2413 chr2L 13690722 intron CG31814 - chr2L 13691928 intron CG31814 - chr2L 13693135 intron CG31814 - chr2L_10_13690001 chr2L_13690001 D20-c2 312 chr2L 13761804 13761833 chr2L 13762916 13762945 Doc 4 1112 1.5 2.5 2.0 1.3 1141 chr2L 13761804 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 D20-c2 313 chr2L 13853089 13853115 chr2L 13862240 13862266 roo 10 9151 4.0 4.5 4.2 1.9 9177 chr2L 13853089 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_10_13855001 chr2L_13855001 D20-c2 314 chr2L 13944417 13944432 chr2L 13944538 13944553 4 121 3.0 5.5 4.2 0.8 136 chr2L 13944417 intron Ance-3 + chr2L 13944485 intron Ance-3 + chr2L 13944553 intron Ance-3 + chr2L_4_13940001 chr2L_13940001 D20-c2 315 chr2L 13974774 13974794 chr2L 13975177 13975198 9 403 18.5 33.0 25.8 0.3 424 chr2L 13974774 exon NimC1 - chr2L 13974986 exon NimC1 - chr2L 13975198 exon NimC1 - chr2L_9_13970001 chr2L_13970001 D20-c2 316 chr2L 13981518 13981550 chr2L 13981610 13981642 8 92 5.0 3.5 4.2 1.5 124 chr2L 13981518 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981642 intron NimC2 + chr2L_8_13980001 chr2L_13980001 D20-c2 317 chr2L 14000073 14000091 chr2L 14000153 14000171 4 80 10.0 8.5 9.2 0.4 98 chr2L 14000073 intron rk - chr2L 14000122 intron rk - chr2L 14000171 intron rk - chr2L_4_14000001 chr2L_14000001 D20-c2 318 chr2L 14005180 14005186 chr2L 14005259 14005265 7 79 11.5 5.5 8.5 0.7 85 chr2L 14005180 intergenic not near genes chr2L 14005222 intergenic not near genes chr2L 14005265 intergenic not near genes chr2L_7_14005001 chr2L_14005001 D20-c2 319 chr2L 14010404 14010437 chr2L 14010481 14010514 5 77 9.5 8.5 9.0 0.5 110 chr2L 14010404 intergenic not near genes chr2L 14010459 intergenic not near genes chr2L 14010514 intergenic not near genes chr2L_5_14010001 chr2L_14010001 D20-c2 320 chr2L 14112744 14112770 chr2L 14112836 14112862 5 92 7.0 4.5 5.8 0.7 118 chr2L 14112744 intergenic not near genes chr2L 14112803 intergenic not near genes chr2L 14112862 intergenic not near genes chr2L_5_14110001 chr2L_14110001 D20-c2 321 chr2L 14125966 14125997 chr2L 14126050 14126080 9 84 12.0 14.5 13.2 0.6 114 chr2L 14125966 intergenic not near genes chr2L 14126023 intergenic not near genes chr2L 14126080 intergenic not near genes chr2L_9_14125001 chr2L_14125001 D20-c2 322 chr2L 14222303 14222330 chr2L 14222391 14222418 5 88 5.0 6.5 5.8 0.7 115 chr2L 14222303 intron Dyrk2 - chr2L 14222360 intron Dyrk2 - chr2L 14222418 intron Dyrk2 - chr2L_5_14220001 chr2L_14220001 D20-c2 323 chr2L 14246296 14246311 chr2L 14246375 14246390 4 79 3.5 9.0 6.2 0.6 94 chr2L 14246296 intergenic not near genes chr2L 14246343 intergenic not near genes chr2L 14246390 intergenic not near genes chr2L_4_14245001 chr2L_14245001 D20-c2 324 chr2L 14367819 14367838 chr2L 14367947 14367966 6 128 3.0 3.0 3.0 1.5 147 chr2L 14367819 intergenic not near genes chr2L 14367892 intergenic not near genes chr2L 14367966 intergenic not near genes chr2L_6_14365001 chr2L_14365001 D20-c2 325 chr2L 14410038 14410051 chr2L 14410134 14410147 6 96 1.5 2.5 2.0 2.0 109 chr2L 14410038 5` UTR CR44733 + chr2L 14410092 intergenic CR44733 + chr2L 14410147 intergenic CR44733 + chr2L_6_14410001 chr2L_14410001 D20-c2 326 chr2L 14564193 14564231 chr2L 14564270 14564308 26 77 5.0 4.5 4.8 4.5 115 chr2L 14564193 intergenic CG3473 - chr2L 14564250 intergenic not near genes chr2L 14564308 intergenic not near genes chr2L_26_14560001 chr2L_14560001 D20-c2 327 chr2L 14642567 14642602 chr2L 14651731 14651766 roo 8 9164 4.5 0.5 2.5 2.3 9199 chr2L 14642567 intron osp - chr2L 14647166 intron osp - chr2L 14651766 intron osp - chr2L_8_14645001 chr2L_14645001 D20-c2 328 chr2L 14694257 14694290 chr2L 14694382 14694415 14 125 3.0 1.0 2.0 4.7 158 chr2L 14694257 intergenic not near genes chr2L 14694336 intergenic not near genes chr2L 14694415 intergenic not near genes chr2L_14_14690001 chr2L_14690001 D20-c2 329 chr2L 14778805 14778841 chr2L 14779094 14779130 18 288 3.0 4.5 3.8 3.8 325 chr2L 14778805 intergenic not near genes chr2L 14778968 intergenic not near genes chr2L 14779130 intergenic not near genes chr2L_18_14775001 chr2L_14775001 D20-c2 330 chr2L 14803884 14803911 chr2L 14809088 14809115 copia 13 5204 3.5 6.0 4.8 2.2 5231 chr2L 14803884 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_13_14805001 chr2L_14805001 D20-c2 331 chr2L 14833800 14833826 chr2L 14833905 14833931 6 105 1.0 1.5 1.2 2.7 131 chr2L 14833800 intergenic not near genes chr2L 14833866 intergenic not near genes chr2L 14833931 intergenic not near genes chr2L_6_14830001 chr2L_14830001 D20-c2 332 chr2L 14840979 14841009 chr2L 14841067 14841097 6 88 1.5 2.5 2.0 2.0 118 chr2L 14840979 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 D20-c2 333 chr2L 14854599 14854625 chr2L 14854685 14854711 11 86 5.0 2.5 3.8 2.3 112 chr2L 14854599 intergenic not near genes chr2L 14854655 intergenic not near genes chr2L 14854711 intergenic not near genes chr2L_11_14850001 chr2L_14850001 D20-c2 334 chr2L 14889950 14889985 chr2L 14890376 14890411 jockey 4 426 2.0 2.5 2.2 1.2 461 chr2L 14889950 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890411 intergenic not near genes chr2L_4_14890001 chr2L_14890001 D20-c2 335 chr2L 15000868 15000888 chr2L 15000993 15001013 6 126 25.0 10.5 17.8 0.3 145 chr2L 15000868 intergenic not near genes chr2L 15000940 intergenic not near genes chr2L 15001013 intergenic not near genes chr2L_6_15000001 chr2L_15000001 D20-c2 336 chr2L 15005056 15005064 chr2L 15005205 15005214 5 150 0.5 3.5 2.0 1.7 158 chr2L 15005056 intergenic not near genes chr2L 15005135 intergenic not near genes chr2L 15005214 intergenic not near genes chr2L_5_15005001 chr2L_15005001 D20-c2 337 chr2L 15044707 15044741 chr2L 15044784 15044818 8 77 0.0 0.0 0.0 8.0 111 chr2L 15044707 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044818 intergenic ck - chr2L_8_15040001 chr2L_15040001 D20-c2 338 chr2L 15078072 15078101 chr2L 15078161 15078190 6 89 1.0 1.0 1.0 3.0 118 chr2L 15078072 intron CG15270 + chr2L 15078131 intron CG15270 + chr2L 15078190 intron CG15270 + chr2L_6_15075001 chr2L_15075001 D20-c2 339 chr2L 15082667 15082691 chr2L 15082755 15082786 4 93 1.0 2.0 1.5 1.6 119 chr2L 15082667 intron CG15270 + chr2L 15082726 intron CG15270 + chr2L 15082786 intron CG15270 + chr2L_4_15080001 chr2L_15080001 D20-c2 340 chr2L 15156598 15156633 chr2L 15156681 15156716 14 83 1.5 1.0 1.2 6.4 118 chr2L 15156598 intergenic not near genes chr2L 15156657 intergenic not near genes chr2L 15156716 intergenic not near genes chr2L_14_15155001 chr2L_15155001 D20-c2 341 chr2L 15219682 15219693 chr2L 15219760 15219771 7 78 5.5 7.0 6.2 1.0 89 chr2L 15219682 intergenic not near genes chr2L 15219726 intergenic not near genes chr2L 15219771 intergenic not near genes chr2L_7_15215001 chr2L_15215001 D20-c2 342 chr2L 15226366 15226393 chr2L 15226443 15226470 13 77 1.5 2.5 2.0 4.3 104 chr2L 15226366 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226470 intergenic not near genes chr2L_13_15225001 chr2L_15225001 D20-c2 343 chr2L 15343537 15343557 chr2L 15343623 15343643 4 86 3.5 0.0 1.8 1.4 106 chr2L 15343537 intergenic not near genes chr2L 15343590 intergenic not near genes chr2L 15343643 intergenic not near genes chr2L_4_15340001 chr2L_15340001 D20-c2 344 chr2L 15405240 15405269 chr2L 15405323 15405352 11 83 3.5 2.0 2.8 2.9 112 chr2L 15405240 intergenic not near genes chr2L 15405296 intergenic not near genes chr2L 15405352 intergenic not near genes chr2L_11_15405001 chr2L_15405001 D20-c2 345 chr2L 15510938 15510964 chr2L 15511033 15511059 6 95 4.0 1.0 2.5 1.7 121 chr2L 15510938 intergenic not near genes chr2L 15510998 intergenic not near genes chr2L 15511059 intergenic not near genes chr2L_6_15510001 chr2L_15510001 D20-c2 346 chr2L 15514321 15514330 chr2L 15514406 15514415 8 85 2.5 6.5 4.5 1.5 94 chr2L 15514321 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514415 intergenic not near genes chr2L_8_15510001 chr2L_15510001 D20-c2 347 chr2L 15602860 15602894 chr2L 15603291 15603294 12 428 1.5 0.5 1.0 6.0 434 chr2L 15602860 intergenic not near genes chr2L 15603077 intergenic not near genes chr2L 15603294 intergenic not near genes chr2L_12_15600001 chr2L_15600001 D20-c2 348 chr2L 15863198 15863219 chr2L 15863426 15863447 5 228 3.5 3.0 3.2 1.2 249 chr2L 15863198 intergenic CR42791 + chr2L 15863322 5` UTR CR42791 + chr2L 15863447 5` UTR CR42791 + chr2L_5_15860001 chr2L_15860001 D20-c2 349 chr2L 15915652 15915685 chr2L 15915731 15915764 14 79 4.5 5.5 5.0 2.3 112 chr2L 15915652 intron beat-Ib - chr2L 15915708 intron beat-Ib - chr2L 15915764 intron beat-Ib - chr2L_14_15915001 chr2L_15915001 D20-c2 350 chr2L 15935207 15935222 chr2L 15935298 15935313 4 91 0.5 1.5 1.0 2.0 106 chr2L 15935207 intron beat-Ib - chr2L 15935260 intron beat-Ib - chr2L 15935313 intron beat-Ib - chr2L_4_15935001 chr2L_15935001 D20-c2 351 chr2L 15956021 15956055 chr2L 15957489 15957523 hobo 14 1467 3.0 1.5 2.2 4.4 1502 chr2L 15956021 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957523 intron beat-Ib - chr2L_14_15955001 chr2L_15955001 D20-c2 352 chr2L 15996576 15996604 chr2L 15996699 15996727 7 123 2.0 0.5 1.2 3.2 151 chr2L 15996576 intergenic not near genes chr2L 15996652 intergenic not near genes chr2L 15996727 intergenic not near genes chr2L_7_15995001 chr2L_15995001 D20-c2 353 chr2L 16058129 16058151 chr2L 16058271 16058293 8 142 4.0 3.0 3.5 1.8 164 chr2L 16058129 intron beat-Ia + chr2L 16058211 intron beat-Ia + chr2L 16058293 intron beat-Ia + chr2L_8_16055001 chr2L_16055001 D20-c2 354 chr2L 10176024 10176024 chr2L 16071771 16071771 4 5895747 19.0 21.5 20.2 0.2 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 D20-c2 355 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 21.0 15.5 18.2 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 D20-c2 356 chr2L 16141173 16141185 chr2L 16146381 16146393 copia 7 5208 2.5 4.5 3.5 1.6 5220 chr2L 16141173 intergenic not near genes chr2L 16143783 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_7_16140001 chr2L_16140001 D20-c2 357 chr2L 16153733 16153749 chr2L 16160788 16160804 297 13 7055 7.0 5.0 6.0 1.9 7071 chr2L 16153733 intergenic not near genes chr2L 16157268 intergenic not near genes chr2L 16160804 intergenic not near genes chr2L_13_16155001 chr2L_16155001 D20-c2 358 chr2L 16171765 16171803 chr2L 16171860 16171898 18 94 3.0 2.0 2.5 5.1 133 chr2L 16171765 intron Ca-alpha1D + chr2L 16171832 intron Ca-alpha1D + chr2L 16171898 intron Ca-alpha1D + chr2L_18_16170001 chr2L_16170001 D20-c2 359 chr2L 9084336 9084340 chr2L 16217660 16217660 20 7133322 13.5 15.5 14.5 1.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_20_12650001 chr2L_12650001 D20-c2 360 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 21.0 15.5 18.2 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 D20-c2 361 chr2L 16254891 16254907 chr2L 16255151 16255167 4 260 3.5 1.5 2.5 1.1 276 chr2L 16254891 intron PRL-1 - chr2L 16255029 intron PRL-1 - chr2L 16255167 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 D20-c2 362 chr2L 16280257 16280286 chr2L 16281429 16281458 1360 13 1172 4.0 8.5 6.2 1.8 1201 chr2L 16280257 intron crp - chr2L 16280858 intron crp - chr2L 16281458 intron crp - chr2L_13_16280001 chr2L_16280001 D20-c2 363 chr2L 16391800 16391832 chr2L 16391877 16391909 7 77 2.0 3.0 2.5 2.0 109 chr2L 16391800 intergenic not near genes chr2L 16391854 intergenic not near genes chr2L 16391909 intergenic not near genes chr2L_7_16390001 chr2L_16390001 D20-c2 364 chr2L 16434105 16434126 chr2L 16434188 16434209 6 83 2.5 0.5 1.5 2.4 104 chr2L 16434105 intron CG5888 - chr2L 16434157 intron CG5888 - chr2L 16434209 intron CG5888 - chr2L_6_16430001 chr2L_16430001 D20-c2 365 chr2L 16480603 16480638 chr2L 16480692 16480727 14 89 2.0 1.0 1.5 5.6 124 chr2L 16480603 intron dac - chr2L 16480665 intron dac - chr2L 16480727 intron dac - chr2L_14_16480001 chr2L_16480001 D20-c2 366 chr2L 16535248 16535282 chr2L 16535369 16535403 12 121 3.5 2.5 3.0 3.0 155 chr2L 16535248 intergenic CR45355 - chr2L 16535326 intergenic CR45355 - chr2L 16535403 intergenic CR45355 - chr2L_12_16535001 chr2L_16535001 D20-c2 367 chr2L 16573238 16573261 chr2L 16573322 16573344 16 84 7.0 10.5 8.8 1.6 106 chr2L 16573238 intron CG42389 + chr2L 16573291 intron CG42389 + chr2L 16573344 intron CG42389 + chr2L_16_16570001 chr2L_16570001 D20-c2 368 chr2L 16583094 16583126 chr2L 16583183 16583215 4 89 3.0 3.0 3.0 1.0 121 chr2L 16583094 intron CG42389 + chr2L 16583154 intron CG42389 + chr2L 16583215 intron CG42389 + chr2L_4_16580001 chr2L_16580001 D20-c2 369 chr2L 16583554 16583582 chr2L 16583689 16583716 5 135 1.5 2.0 1.8 1.8 162 chr2L 16583554 intron CG42389 + chr2L 16583635 intron CG42389 + chr2L 16583716 intron CG42389 + chr2L_5_16580001 chr2L_16580001 D20-c2 370 chr2L 16693916 16693943 chr2L 16693998 16694024 11 82 2.5 5.0 3.8 2.3 108 chr2L 16693916 intron grp + chr2L 16693970 intron grp + chr2L 16694024 intron grp + chr2L_11_16690001 chr2L_16690001 D20-c2 371 chr2L 16710714 16710748 chr2L 16710799 16710833 12 82 2.0 4.0 3.0 3.0 119 chr2L 16710714 intron CG31808 - chr2L 16710774 intron CG31808 - chr2L 16710833 intron CG31808 - chr2L_12_16710001 chr2L_16710001 D20-c2 372 chr2L 16764970 16765001 chr2L 16765051 16765082 4 81 4.0 8.0 6.0 0.6 112 chr2L 16764970 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765082 intergenic not near genes chr2L_4_16765001 chr2L_16765001 D20-c2 373 chr2L 16867707 16867731 chr2L 16867857 16867881 9 149 4.0 4.0 4.0 1.8 174 chr2L 16867707 intergenic not near genes chr2L 16867794 intergenic not near genes chr2L 16867881 intergenic not near genes chr2L_9_16865001 chr2L_16865001 D20-c2 374 chr2L 16927476 16927499 chr2L 16927568 16927592 5 93 13.5 11.5 12.5 0.4 116 chr2L 16927476 intergenic not near genes chr2L 16927534 intergenic not near genes chr2L 16927592 intergenic not near genes chr2L_5_16925001 chr2L_16925001 D20-c2 375 chr2L 16942938 16942961 chr2L 16943017 16943040 6 79 5.5 6.5 6.0 0.9 102 chr2L 16942938 intergenic not near genes chr2L 16942989 intergenic not near genes chr2L 16943040 intergenic not near genes chr2L_6_16940001 chr2L_16940001 D20-c2 376 chr2L 16952688 16952700 chr2L 16952798 16952810 7 110 3.0 4.5 3.8 1.5 122 chr2L 16952688 intergenic not near genes chr2L 16952749 intergenic not near genes chr2L 16952810 intergenic not near genes chr2L_7_16950001 chr2L_16950001 D20-c2 377 chr2L 16989228 16989257 chr2L 16989329 16989336 5 97 5.5 8.5 7.0 0.6 108 chr2L 16989228 intron beat-IIIb + chr2L 16989282 intron beat-IIIb + chr2L 16989336 intron beat-IIIb + chr2L_5_16985001 chr2L_16985001 D20-c2 378 chr2L 17005415 17005435 chr2L 17005509 17005529 8 97 1.5 5.5 3.5 1.8 114 chr2L 17005415 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005529 intergenic not near genes chr2L_8_17005001 chr2L_17005001 D20-c2 379 chr2L 17032500 17032522 chr2L 17032586 17032608 4 86 1.5 3.0 2.2 1.2 108 chr2L 17032500 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032608 intergenic not near genes chr2L_4_17030001 chr2L_17030001 D20-c2 380 chr2L 17033916 17033951 chr2L 17034002 17034037 6 86 7.0 9.5 8.2 0.7 121 chr2L 17033916 intergenic not near genes chr2L 17033976 intergenic not near genes chr2L 17034037 intergenic not near genes chr2L_6_17030001 chr2L_17030001 D20-c2 381 chr2L 17050014 17050048 chr2L 17050102 17050136 15 86 3.5 4.5 4.0 3.0 122 chr2L 17050014 intergenic not near genes chr2L 17050075 intergenic not near genes chr2L 17050136 intergenic not near genes chr2L_15_17050001 chr2L_17050001 D20-c2 382 chr2L 17053295 17053311 chr2L 17053706 17053722 5 411 12.0 11.0 11.5 0.4 427 chr2L 17053295 intergenic not near genes chr2L 17053508 intergenic not near genes chr2L 17053722 intergenic not near genes chr2L_5_17050001 chr2L_17050001 D20-c2 383 chr2L 17062758 17062790 chr2L 17062840 17062873 7 83 0.5 2.0 1.2 3.2 115 chr2L 17062758 intergenic not near genes chr2L 17062816 intergenic not near genes chr2L 17062873 intergenic not near genes chr2L_7_17060001 chr2L_17060001 D20-c2 384 chr2L 17070199 17070220 chr2L 17070296 17070317 8 97 2.5 4.0 3.2 1.9 118 chr2L 17070199 intergenic not near genes chr2L 17070258 intergenic not near genes chr2L 17070317 intergenic not near genes chr2L_8_17070001 chr2L_17070001 D20-c2 385 chr2L 17087377 17087404 chr2L 17087496 17087523 8 119 2.5 2.0 2.2 2.5 146 chr2L 17087377 intergenic CG12620 + chr2L 17087450 intergenic CG12620 + chr2L 17087523 intergenic CG12620 + chr2L_8_17085001 chr2L_17085001 D20-c2 386 chr2L 17101900 17101916 chr2L 17101978 17101994 5 78 6.5 3.0 4.8 0.9 94 chr2L 17101900 intergenic not near genes chr2L 17101947 intergenic not near genes chr2L 17101994 intergenic not near genes chr2L_5_17100001 chr2L_17100001 D20-c2 387 chr2L 17167569 17167587 chr2L 17167811 17167829 pogo 7 242 4.0 3.0 3.5 1.6 260 chr2L 17167569 intron,intron CG34106 +,beat-IIIa + chr2L 17167699 intron,intron CG34106 +,beat-IIIa + chr2L 17167829 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 D20-c2 388 chr2L 17199157 17199194 chr2L 17200625 17200649 hobo 9 1467 4.0 1.0 2.5 2.6 1492 chr2L 17199157 intron beat-IIIc - chr2L 17199903 intron beat-IIIc - chr2L 17200649 intron beat-IIIc - chr2L_9_17195001 chr2L_17195001 D20-c2 389 chr2L 17234742 17234755 chr2L 17234849 17234862 4 107 5.5 8.0 6.8 0.5 120 chr2L 17234742 intron beat-IIIc - chr2L 17234802 intron beat-IIIc - chr2L 17234862 intron beat-IIIc - chr2L_4_17230001 chr2L_17230001 D20-c2 390 chr2L 17239188 17239217 chr2L 17239273 17239302 4 85 15.0 20.0 17.5 0.2 114 chr2L 17239188 intron beat-IIIc - chr2L 17239245 intron beat-IIIc - chr2L 17239302 intron beat-IIIc - chr2L_4_17235001 chr2L_17235001 D20-c2 391 chr2L 17273190 17273222 chr2L 17277974 17278006 F-element 7 4784 4.0 2.0 3.0 1.8 4816 chr2L 17273190 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_7_17275001 chr2L_17275001 D20-c2 392 chr2L 17303442 17303470 chr2L 17303621 17303633 7 176 9.5 13.0 11.2 0.6 191 chr2L 17303442 intergenic not near genes chr2L 17303538 intergenic not near genes chr2L 17303633 intergenic not near genes chr2L_7_17300001 chr2L_17300001 D20-c2 393 chr2L 17323010 17323042 chr2L 17323093 17323125 4 83 8.0 5.5 6.8 0.5 115 chr2L 17323010 intergenic not near genes chr2L 17323068 intergenic not near genes chr2L 17323125 intergenic not near genes chr2L_4_17320001 chr2L_17320001 D20-c2 394 chr2L 17328754 17328777 chr2L 17329045 17329068 5 291 10.0 10.5 10.2 0.4 314 chr2L 17328754 intergenic not near genes chr2L 17328911 intergenic not near genes chr2L 17329068 intergenic not near genes chr2L_5_17325001 chr2L_17325001 D20-c2 395 chr2L 17329073 17329100 chr2L 17329202 17329229 6 129 9.5 6.5 8.0 0.7 156 chr2L 17329073 intergenic not near genes chr2L 17329151 intergenic not near genes chr2L 17329229 intergenic not near genes chr2L_6_17325001 chr2L_17325001 D20-c2 396 chr2L 17337322 17337354 chr2L 17337413 17337446 4 92 9.5 8.5 9.0 0.4 124 chr2L 17337322 intergenic not near genes chr2L 17337384 intergenic not near genes chr2L 17337446 intergenic not near genes chr2L_4_17335001 chr2L_17335001 D20-c2 397 chr2L 17405369 17405397 chr2L 17405485 17405513 6 116 11.0 13.0 12.0 0.5 144 chr2L 17405369 exon CLIP-190 + chr2L 17405441 intron CLIP-190 + chr2L 17405513 exon CLIP-190 + chr2L_6_17405001 chr2L_17405001 D20-c2 398 chr2L 17432636 17432659 chr2L 17432714 17432737 4 78 9.5 6.5 8.0 0.4 101 chr2L 17432636 intron Dif - chr2L 17432686 intron Dif - chr2L 17432737 intron Dif - chr2L_4_17430001 chr2L_17430001 D20-c2 399 chr2L 17687515 17687519 chr2L 17692261 17692265 F-element 4 4746 2.0 5.0 3.5 0.9 4750 chr2L 17687515 intron CadN - chr2L 17689890 intron CadN - chr2L 17692265 intron CadN - chr2L_4_17685001 chr2L_17685001 D20-c2 400 chr2L 17705760 17705767 chr2L 17705861 17705868 4 101 3.0 2.0 2.5 1.1 108 chr2L 17705760 intron,3` UTR CadN -,CG43231 + chr2L 17705814 intron,3` UTR CadN -,CG43231 + chr2L 17705868 intron,intron CadN -,CG43231 + chr2L_4_17705001 chr2L_17705001 D20-c2 401 chr2L 17718384 17718417 chr2L 17718490 17718523 14 105 12.0 13.5 12.8 1.0 139 chr2L 17718384 intron CadN - chr2L 17718454 intron CadN - chr2L 17718523 intron CadN - chr2L_14_17715001 chr2L_17715001 D20-c2 402 chr2L 17723789 17723798 chr2L 17723883 17723892 5 94 1.0 2.5 1.8 1.8 103 chr2L 17723789 intron CadN - chr2L 17723840 intron CadN - chr2L 17723892 intron CadN - chr2L_5_17720001 chr2L_17720001 D20-c2 403 chr2L 17784643 17784679 chr2L 17784742 17784778 5 99 1.5 3.5 2.5 1.4 135 chr2L 17784643 intergenic not near genes chr2L 17784710 intergenic not near genes chr2L 17784778 intergenic not near genes chr2L_5_17780001 chr2L_17780001 D20-c2 404 chr2L 17811002 17811036 chr2L 17811091 17811125 10 89 7.0 8.5 7.8 1.1 123 chr2L 17811002 intron CadN2 - chr2L 17811064 intron CadN2 - chr2L 17811125 intron CadN2 - chr2L_10_17810001 chr2L_17810001 D20-c2 405 chr2L 17819932 17819951 chr2L 17825136 17825155 copia 7 5204 3.0 5.5 4.2 1.3 5223 chr2L 17819932 intron CadN2 - chr2L 17822544 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_7_17820001 chr2L_17820001 D20-c2 406 chr2L 17911962 17911989 chr2L 17914141 17914176 pogo 9 2184 5.0 2.5 3.8 1.9 2214 chr2L 17911962 intergenic not near genes chr2L 17913069 intergenic not near genes chr2L 17914176 intergenic CG43271 - chr2L_9_17910001 chr2L_17910001 D20-c2 407 chr2L 17951943 17951974 chr2L 17953411 17953442 hobo 7 1468 3.5 2.0 2.8 1.8 1499 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953442 intergenic not near genes chr2L_7_17950001 chr2L_17950001 D20-c2 408 chr2L 17989996 17990012 chr2L 17990073 17990089 5 77 11.0 15.5 13.2 0.4 93 chr2L 17989996 intergenic Prosbeta5R2 + chr2L 17990042 intergenic Prosbeta5R2 + chr2L 17990089 intergenic Prosbeta5R2 + chr2L_5_17990001 chr2L_17990001 D20-c2 409 chr2L 17988366 17988388 chr2L 17991963 17991985 7 3597 14.5 12.5 13.5 0.5 3619 chr2L 17988366 3` UTR CG5681 + chr2L 17990176 intergenic Prosbeta5R2 + chr2L 17991985 intergenic Prosbeta5R2 + chr2L_7_17990001 chr2L_17990001 D20-c2 410 chr2L 18040733 18040758 chr2L 18040823 18040848 4 90 4.0 5.5 4.8 0.7 115 chr2L 18040733 intron rdo + chr2L 18040790 intron rdo + chr2L 18040848 intron rdo + chr2L_4_18040001 chr2L_18040001 D20-c2 411 chr2L 18041432 18041463 chr2L 18041702 18041733 6 270 8.5 7.5 8.0 0.7 301 chr2L 18041432 intron rdo + chr2L 18041582 intron rdo + chr2L 18041733 intron rdo + chr2L_6_18040001 chr2L_18040001 D20-c2 412 chr2L 18047032 18047061 chr2L 18047115 18047144 11 83 11.5 12.0 11.8 0.9 112 chr2L 18047032 intron rdo + chr2L 18047088 intron rdo + chr2L 18047144 intron rdo + chr2L_11_18045001 chr2L_18045001 D20-c2 413 chr2L 18051872 18051906 chr2L 18061020 18061054 roo 10 9148 1.5 1.5 1.5 4.0 9182 chr2L 18051872 intron rdo + chr2L 18056463 intron rdo + chr2L 18061054 intron rdo + chr2L_10_18055001 chr2L_18055001 D20-c2 414 chr2L 18103044 18103072 chr2L 18103132 18103160 7 88 9.0 11.0 10.0 0.6 116 chr2L 18103044 intergenic not near genes chr2L 18103102 intergenic not near genes chr2L 18103160 intergenic not near genes chr2L_7_18100001 chr2L_18100001 D20-c2 415 chr2L 18235060 18235092 chr2L 18235193 18235224 10 133 22.0 19.5 20.8 0.5 164 chr2L 18235060 intron CG42750 - chr2L 18235142 intron CG42750 - chr2L 18235224 intron CG42750 - chr2L_10_18235001 chr2L_18235001 D20-c2 416 chr2L 18257134 18257157 chr2L 18257215 18257238 5 81 5.5 5.0 5.2 0.8 104 chr2L 18257134 intron,5` UTR CG42750 -,CR43408 + chr2L 18257186 intron CG42750 - chr2L 18257238 intron CG42750 - chr2L_5_18255001 chr2L_18255001 D20-c2 417 chr2L 18298932 18298964 chr2L 18299010 18299036 14 75 2.0 3.5 2.8 3.7 104 chr2L 18298932 intergenic not near genes chr2L 18298984 intergenic not near genes chr2L 18299036 intergenic not near genes chr2L_14_18295001 chr2L_18295001 D20-c2 418 chr2L 18364259 18364289 chr2L 18364360 18364390 9 101 3.0 1.5 2.2 2.8 131 chr2L 18364259 intron Fas3 + chr2L 18364324 intron Fas3 + chr2L 18364390 intron Fas3 + chr2L_9_18360001 chr2L_18360001 D20-c2 419 chr2L 18370786 18370807 chr2L 18370948 18370969 9 162 3.5 3.0 3.2 2.1 183 chr2L 18370786 intron Fas3 + chr2L 18370878 intron Fas3 + chr2L 18370969 intron Fas3 + chr2L_9_18370001 chr2L_18370001 D20-c2 420 chr2L 18408030 18408051 chr2L 18412815 18412836 Doc 6 4785 2.5 4.0 3.2 1.4 4806 chr2L 18408030 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_6_18410001 chr2L_18410001 D20-c2 421 chr2L 18629368 18629402 chr2L 18629454 18629488 15 86 4.5 3.0 3.8 3.1 120 chr2L 18629368 intron MESR3 + chr2L 18629428 intron MESR3 + chr2L 18629488 intron MESR3 + chr2L_15_18625001 chr2L_18625001 D20-c2 422 chr2L 18670537 18670553 chr2L 18670838 18670854 7 301 7.5 5.0 6.2 1.0 317 chr2L 18670537 intron CG43338 - chr2L 18670696 intron CG43338 - chr2L 18670854 intron CG43338 - chr2L_7_18670001 chr2L_18670001 D20-c2 423 chr2L 18766456 18766463 chr2L 18766578 18766585 4 122 1.5 0.0 0.8 2.2 129 chr2L 18766456 intron ham - chr2L 18766520 intron ham - chr2L 18766585 intron ham - chr2L_4_18765001 chr2L_18765001 D20-c2 424 chr2L 18816028 18816059 chr2L 18816243 18816274 9 215 0.5 3.5 2.0 3.0 246 chr2L 18816028 intergenic not near genes chr2L 18816151 intergenic not near genes chr2L 18816274 intergenic not near genes chr2L_9_18815001 chr2L_18815001 D20-c2 425 chr2L 18872947 18872975 chr2L 18873034 18873062 7 87 3.0 3.5 3.2 1.7 115 chr2L 18872947 intron tup - chr2L 18873004 intron tup - chr2L 18873062 intron tup - chr2L_7_18870001 chr2L_18870001 D20-c2 426 chr2L 18883852 18883887 chr2L 18883935 18883970 11 83 1.0 4.5 2.8 2.9 118 chr2L 18883852 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_11_18880001 chr2L_18880001 D20-c2 427 chr2L 18898395 18898427 chr2L 18898478 18898510 15 83 3.5 1.5 2.5 4.3 115 chr2L 18898395 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898510 intergenic not near genes chr2L_15_18895001 chr2L_18895001 D20-c2 428 chr2L 18904567 18904599 chr2L 18904694 18904725 11 127 3.5 0.5 2.0 3.7 158 chr2L 18904567 intergenic not near genes chr2L 18904646 intergenic not near genes chr2L 18904725 intergenic not near genes chr2L_11_18900001 chr2L_18900001 D20-c2 429 chr2L 18913430 18913459 chr2L 18913517 18913546 13 87 2.5 4.5 3.5 2.9 116 chr2L 18913430 intergenic not near genes chr2L 18913488 intergenic not near genes chr2L 18913546 intergenic not near genes chr2L_13_18910001 chr2L_18910001 D20-c2 430 chr2L 18996005 18996029 chr2L 18996095 18996119 7 90 6.0 3.5 4.8 1.2 114 chr2L 18996005 intergenic CG10650 - chr2L 18996062 intergenic CG10650 - chr2L 18996119 intergenic CG10650 - chr2L_7_18995001 chr2L_18995001 D20-c2 431 chr2L 19016826 19016859 chr2L 19017086 19017120 5 261 15.5 9.5 12.5 0.4 294 chr2L 19016826 intergenic not near genes chr2L 19016973 intergenic not near genes chr2L 19017120 intergenic not near genes chr2L_5_19015001 chr2L_19015001 D20-c2 432 chr2L 19024096 19024097 chr2L 21768291 21768291 16 2744194 29.5 26.0 27.8 0.6 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_16_20395001 chr2L_20395001 D20-c2 433 chr2L 19070281 19070300 chr2L 19070375 19070393 5 94 10.0 9.0 9.5 0.5 112 chr2L 19070281 intergenic CG10702 - chr2L 19070337 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_5_19070001 chr2L_19070001 D20-c2 434 chr2L 19144926 19145194 chr2L 19145005 19145282 9 82 6.5 4.0 5.2 1.5 356 chr2L 19144926 intron brat + chr2L 19145104 intron brat + chr2L 19145282 intron brat + chr2L_9_19145001 chr2L_19145001 D20-c2 435 chr2L 19147368 19147401 chr2L 19154404 19154437 297 8 7036 3.5 2.5 3.0 2.0 7069 chr2L 19147368 intron brat + chr2L 19150902 intron brat + chr2L 19154437 intron brat + chr2L_8_19150001 chr2L_19150001 D20-c2 436 chr2L 19345017 19345050 chr2L 19357227 19357260 blood 9 12210 1.5 8.0 4.8 1.6 12243 chr2L 19345017 intron dnt - chr2L 19351138 intron dnt - chr2L 19357260 intron dnt - chr2L_9_19350001 chr2L_19350001 D20-c2 437 chr2L 19357547 19357569 chr2L 19357638 19357660 9 91 3.5 11.0 7.2 1.1 113 chr2L 19357547 intron dnt - chr2L 19357604 intron dnt - chr2L 19357660 intron dnt - chr2L_9_19355001 chr2L_19355001 D20-c2 438 chr2L 19383999 19384022 chr2L 19384097 19384124 6 100 17.5 16.5 17.0 0.3 125 chr2L 19383999 exon fon - chr2L 19384062 exon fon - chr2L 19384124 exon fon - chr2L_6_19380001 chr2L_19380001 D20-c2 439 chr2L 19393967 19393995 chr2L 19394082 19394110 7 115 9.0 6.0 7.5 0.8 143 chr2L 19393967 intron CG17544 - chr2L 19394038 intron CG17544 - chr2L 19394110 intron CG17544 - chr2L_7_19390001 chr2L_19390001 D20-c2 440 chr2L 19405616 19405634 chr2L 19405707 19405725 4 91 2.5 2.5 2.5 1.1 109 chr2L 19405616 intron Pax - chr2L 19405670 intron Pax - chr2L 19405725 intron Pax - chr2L_4_19405001 chr2L_19405001 D20-c2 441 chr2L 19489630 19489655 chr2L 19490459 19490484 4 829 33.5 15.0 24.2 0.2 854 chr2L 19489630 exon CG10194 - chr2L 19490057 exon CG10194 - chr2L 19490484 5` UTR CG18094 + chr2L_4_19490001 chr2L_19490001 D20-c2 442 chr2L 19557824 19557851 chr2L 19557917 19557938 5 91 2.0 3.0 2.5 1.4 114 chr2L 19557824 intergenic Tep5 + chr2L 19557881 intergenic Tep5 + chr2L 19557938 intergenic Tep5 + chr2L_5_19555001 chr2L_19555001 D20-c2 443 chr2L 19561344 19561367 chr2L 19561486 19561509 7 142 6.0 6.5 6.2 1.0 165 chr2L 19561344 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561509 exon Tep5 + chr2L_7_19560001 chr2L_19560001 D20-c2 444 chr2L 19562530 19562555 chr2L 19562611 19562625 5 79 14.0 11.0 12.5 0.4 95 chr2L 19562530 exon Tep5 + chr2L 19562578 intron Tep5 + chr2L 19562625 intron Tep5 + chr2L_5_19560001 chr2L_19560001 D20-c2 445 chr2L 19601578 19601598 chr2L 19601655 19601676 6 78 3.5 6.0 4.8 1.0 98 chr2L 19601578 intron,intron Lar +,CR44978 - chr2L 19601627 intron,intron Lar +,CR44978 - chr2L 19601676 intron,intron Lar +,CR44978 - chr2L_6_19600001 chr2L_19600001 D20-c2 446 chr2L 19620088 19620131 chr2L 19621078 19621121 jockey 26 989 5.5 2.5 4.0 5.2 1033 chr2L 19620088 intron Lar + chr2L 19620604 intron Lar + chr2L 19621121 intron Lar + chr2L_26_19620001 chr2L_19620001 D20-c2 447 chr2L 19652584 19652603 chr2L 19674020 19674040 opus 8 21437 2.0 3.0 2.5 2.3 21456 chr2L 19652584 intron Lar + chr2L 19663312 intron Lar + chr2L 19674040 intron Lar + chr2L_8_19660001 chr2L_19660001 D20-c2 448 chr2L 19683362 19683390 chr2L 19683817 19683845 8 455 11.0 9.0 10.0 0.7 483 chr2L 19683362 intron Lar + chr2L 19683604 intron Lar + chr2L 19683845 intron Lar + chr2L_8_19680001 chr2L_19680001 D20-c2 449 chr2L 19703535 19703570 chr2L 19712672 19712706 roo 13 9137 3.5 3.5 3.5 2.9 9171 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712706 intron Lar + chr2L_13_19705001 chr2L_19705001 D20-c2 450 chr2L 19737358 19737387 chr2L 19740828 19740857 1360 6 3469 6.0 8.0 7.0 0.8 3499 chr2L 19737358 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_6_19735001 chr2L_19735001 D20-c2 451 chr2L 19742361 19742380 chr2L 19742447 19742466 4 86 12.0 11.0 11.5 0.3 105 chr2L 19742361 intergenic CG10631 - chr2L 19742414 intergenic CG10631 - chr2L 19742466 intergenic CG10631 - chr2L_4_19740001 chr2L_19740001 D20-c2 452 chr2L 19762813 19762836 chr2L 19763056 19763079 pogo 14 243 4.5 5.0 4.8 2.4 266 chr2L 19762813 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763079 intron fbp - chr2L_14_19760001 chr2L_19760001 D20-c2 453 chr2L 19773165 19773186 chr2L 19773253 19773274 4 88 3.0 2.5 2.8 1.1 109 chr2L 19773165 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773274 intergenic not near genes chr2L_4_19770001 chr2L_19770001 D20-c2 454 chr2L 19778557 19778584 chr2L 19778638 19778665 5 81 16.5 21.5 19.0 0.2 108 chr2L 19778557 exon CdGAPr - chr2L 19778611 exon CdGAPr - chr2L 19778665 exon CdGAPr - chr2L_5_19775001 chr2L_19775001 D20-c2 455 chr2L 19806692 19806696 chr2L 19806772 19806776 4 80 5.5 4.5 5.0 0.7 84 chr2L 19806692 intron sick + chr2L 19806734 intron sick + chr2L 19806776 intron sick + chr2L_4_19805001 chr2L_19805001 D20-c2 456 chr2L 19870421 19870443 chr2L 19870903 19870932 10 485 6.5 11.0 8.8 1.0 511 chr2L 19870421 intron sick + chr2L 19870676 intron sick + chr2L 19870932 intron sick + chr2L_10_19870001 chr2L_19870001 D20-c2 457 chr2L 19911289 19911323 chr2L 19911378 19911412 10 89 20.0 17.0 18.5 0.5 123 chr2L 19911289 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911412 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 D20-c2 458 chr2L 20005873 20005904 chr2L 20010950 20010981 flea 4 5077 3.5 2.5 3.0 1.0 5108 chr2L 20005873 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20010981 intron CG43861 - chr2L_4_20005001 chr2L_20005001 D20-c2 459 chr2L 20041447 20041463 chr2L 20041533 20041542 5 85 14.0 13.0 13.5 0.3 95 chr2L 20041447 intron sNPF + chr2L 20041494 intron sNPF + chr2L 20041542 intron sNPF + chr2L_5_20040001 chr2L_20040001 D20-c2 460 chr2L 20124335 20124358 chr2L 20124414 20124437 4 79 4.5 4.0 4.2 0.8 102 chr2L 20124335 intergenic not near genes chr2L 20124386 intergenic not near genes chr2L 20124437 intergenic not near genes chr2L_4_20120001 chr2L_20120001 D20-c2 461 chr2L 20272111 20272143 chr2L 20282823 20282855 copia 11 10712 6.0 3.5 4.8 1.9 10744 chr2L 20272111 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_11_20275001 chr2L_20275001 D20-c2 462 chr2L 20296505 20296539 chr2L 20296587 20296621 9 82 0.0 3.0 1.5 3.6 116 chr2L 20296505 intergenic CR43414 - chr2L 20296563 intergenic CR43414 - chr2L 20296621 intergenic CR43414 - chr2L_9_20295001 chr2L_20295001 D20-c2 463 chr2L 20322633 20322653 chr2L 20322717 20322737 6 84 6.5 6.5 6.5 0.8 104 chr2L 20322633 intron spir + chr2L 20322685 intron spir + chr2L 20322737 intron spir + chr2L_6_20320001 chr2L_20320001 D20-c2 464 chr2L 20372230 20372236 chr2L 20372472 20372478 pogo 4 242 0.0 3.5 1.8 1.4 248 chr2L 20372230 intergenic Ugt37a1 - chr2L 20372354 intergenic Ugt37a1 - chr2L 20372478 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 D20-c2 465 chr2L 20396807 20396832 chr2L 20396884 20396909 7 77 13.5 7.0 10.2 0.6 102 chr2L 20396807 intron CG10947 - chr2L 20396858 intron CG10947 - chr2L 20396909 intron CG10947 - chr2L_7_20395001 chr2L_20395001 D20-c2 466 chr2L 20498687 20498708 chr2L 20498787 20498808 11 100 2.5 8.0 5.2 1.8 121 chr2L 20498687 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498808 intergenic not near genes chr2L_11_20495001 chr2L_20495001 D20-c2 467 chr2L 20568659 20568686 chr2L 20569050 20569077 X-element 10 389 3.0 4.0 3.5 2.2 418 chr2L 20568659 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569077 intron CR45347 + chr2L_10_20565001 chr2L_20565001 D20-c2 468 chr2L 20576233 20576252 chr2L 20583702 20583722 blood 5 7470 1.5 3.0 2.2 1.6 7489 chr2L 20576233 intergenic not near genes chr2L 20579978 intergenic not near genes chr2L 20583722 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 D20-c2 469 chr2L 20601785 20601812 chr2L 20601864 20601891 5 79 5.5 4.0 4.8 0.9 106 chr2L 20601785 intron CR44909 - chr2L 20601838 intron CR44909 - chr2L 20601891 intron CR44909 - chr2L_5_20600001 chr2L_20600001 D20-c2 470 chr2L 20623923 20623944 chr2L 20624003 20624024 4 77 8.5 14.5 11.5 0.3 101 chr2L 20623923 intron CR44909 - chr2L 20623974 intron CR44909 - chr2L 20624024 intron CR44909 - chr2L_4_20620001 chr2L_20620001 D20-c2 471 chr2L 20668686 20668720 chr2L 20668763 20668797 4 77 9.5 7.5 8.5 0.4 111 chr2L 20668686 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_4_20665001 chr2L_20665001 D20-c2 472 chr2L 20695793 20695809 chr2L 20695882 20695898 4 89 10.5 13.0 11.8 0.3 105 chr2L 20695793 intron Hr38 - chr2L 20695846 intron Hr38 - chr2L 20695898 intron Hr38 - chr2L_4_20695001 chr2L_20695001 D20-c2 473 chr2L 20711683 20711699 chr2L 20711774 20711790 7 91 9.5 13.5 11.5 0.6 107 chr2L 20711683 intron,5` UTR Hr38 -,CR44188 + chr2L 20711736 intron,5` UTR Hr38 -,CR44188 + chr2L 20711790 intron,5` UTR Hr38 -,CR44188 + chr2L_7_20710001 chr2L_20710001 D20-c2 474 chr2L 20821502 20821511 chr2L 20821651 20821660 6 149 10.5 15.0 12.8 0.4 158 chr2L 20821502 intergenic not near genes chr2L 20821581 intergenic not near genes chr2L 20821660 intergenic not near genes chr2L_6_20820001 chr2L_20820001 D20-c2 475 chr2L 20826519 20826545 chr2L 20826600 20826626 8 81 8.5 12.0 10.2 0.7 107 chr2L 20826519 intron CG9331 + chr2L 20826572 intron CG9331 + chr2L 20826626 intron CG9331 + chr2L_8_20825001 chr2L_20825001 D20-c2 476 chr2L 20840023 20840056 chr2L 20840236 20840269 16 213 3.5 4.0 3.8 3.3 246 chr2L 20840023 intergenic not near genes chr2L 20840146 intergenic not near genes chr2L 20840269 intergenic CG31676 + chr2L_16_20840001 chr2L_20840001 D20-c2 477 chr2L 20901470 20901486 chr2L 20902635 20902651 1360 5 1165 2.5 3.0 2.8 1.3 1181 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 D20-c2 478 chr2L 20911032 20911057 chr2L 20911109 20911134 5 77 15.0 15.5 15.2 0.3 102 chr2L 20911032 intron,intron CG43739 -,sky - chr2L 20911083 intron,intron CG43739 -,sky - chr2L 20911134 intron,intron CG43739 -,sky - chr2L_5_20910001 chr2L_20910001 D20-c2 479 chr2L 20946944 20946955 chr2L 20947032 20947037 5 87 2.5 4.5 3.5 1.1 93 chr2L 20946944 intergenic CR44606 - chr2L 20946990 intergenic CR44606 - chr2L 20947037 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 D20-c2 480 chr2L 20967084 20967106 chr2L 20967171 20967192 6 87 2.5 4.0 3.2 1.4 108 chr2L 20967084 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967192 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 D20-c2 481 chr2L 20976649 20976679 chr2L 20981465 20981495 X-element 6 4816 2.5 4.5 3.5 1.3 4846 chr2L 20976649 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981495 intron CG42238 - chr2L_6_20975001 chr2L_20975001 D20-c2 482 chr2L 20991038 20991068 chr2L 20991117 20991147 11 79 2.5 5.0 3.8 2.3 109 chr2L 20991038 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991147 intron CG42238 - chr2L_11_20990001 chr2L_20990001 D20-c2 483 chr2L 21020275 21020311 chr2L 21023953 21023989 NOF 14 3678 3.5 3.0 3.2 3.3 3714 chr2L 21020275 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023989 intron CG42238 - chr2L_14_21020001 chr2L_21020001 D20-c2 484 chr2L 21041139 21041156 chr2L 21049401 21049418 Tirant 6 8262 4.0 3.5 3.8 1.2 8279 chr2L 21041139 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049418 intron CG42238 - chr2L_6_21045001 chr2L_21045001 D20-c2 485 chr2L 21074921 21074946 chr2L 21075013 21075038 9 91 3.0 3.0 3.0 2.2 117 chr2L 21074921 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075038 intergenic tadr + chr2L_9_21070001 chr2L_21070001 D20-c2 486 chr2L 21086427 21086455 chr2L 21086543 21086571 8 116 3.0 5.5 4.2 1.5 144 chr2L 21086427 5` UTR CG33509 - chr2L 21086499 5` UTR CG33509 - chr2L 21086571 intergenic CG33509 -,ppk13 - chr2L_8_21085001 chr2L_21085001 D20-c2 487 chr2L 21088919 21088948 chr2L 21089003 21089023 10 83 5.0 2.0 3.5 2.2 104 chr2L 21088919 intergenic ppk13 -,CG9259 + chr2L 21088971 intergenic ppk13 -,CG9259 + chr2L 21089023 intergenic ppk13 -,CG9259 + chr2L_10_21085001 chr2L_21085001 D20-c2 488 chr2L 21179216 21179236 chr2L 21179298 21179318 7 82 11.5 10.0 10.8 0.6 102 chr2L 21179216 intron,5` UTR bur -,CR44911 + chr2L 21179267 intron,5` UTR bur -,CR44911 + chr2L 21179318 intron,5` UTR bur -,CR44911 + chr2L_7_21175001 chr2L_21175001 D20-c2 489 chr2L 21286605 21286622 chr2L 21286684 21286701 5 79 6.5 3.5 5.0 0.8 96 chr2L 21286605 exon Mio - chr2L 21286653 intron Mio - chr2L 21286701 intron Mio - chr2L_5_21285001 chr2L_21285001 D20-c2 490 chr2L 21394377 21394398 chr2L 21394457 21394478 8 78 15.0 16.0 15.5 0.5 101 chr2L 21394377 intergenic not near genes chr2L 21394428 intergenic not near genes chr2L 21394478 intergenic not near genes chr2L_8_21390001 chr2L_21390001 D20-c2 491 chr2L 21597026 21597060 chr2L 21604771 21604805 roo 4 7745 2.0 2.0 2.0 1.3 7779 chr2L 21597026 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604805 intergenic not near genes chr2L_4_21600001 chr2L_21600001 D20-c2 492 chr2L 21809023 21809038 chr2L 21809230 21809245 4 207 9.0 9.0 9.0 0.4 222 chr2L 21809023 intergenic not near genes chr2L 21809134 intergenic not near genes chr2L 21809245 intergenic not near genes chr2L_4_21805001 chr2L_21805001 D20-c2 493 chr2L 21819330 21819361 chr2L 21819419 21819450 7 89 4.0 5.0 4.5 1.3 120 chr2L 21819330 intergenic CR44786 + chr2L 21819390 intergenic CR44786 + chr2L 21819450 intergenic CR44786 + chr2L_7_21815001 chr2L_21815001 D20-c2 494 chr2L 21855474 21855514 chr2L 21855561 21855602 8 88 1.0 4.0 2.5 2.3 128 chr2L 21855474 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855602 intron CR44917 + chr2L_8_21855001 chr2L_21855001 D20-c2 495 chr2L 21859323 21859350 chr2L 21859403 21859431 7 81 19.0 15.0 17.0 0.4 108 chr2L 21859323 intron CR44917 + chr2L 21859377 intron CR44917 + chr2L 21859431 intron CR44917 + chr2L_7_21855001 chr2L_21855001 D20-c2 496 chr2L 21954220 21954253 chr2L 21954301 21954334 4 81 16.5 11.5 14.0 0.3 114 chr2L 21954220 intergenic not near genes chr2L 21954277 intergenic not near genes chr2L 21954334 intergenic not near genes chr2L_4_21950001 chr2L_21950001 D20-c2 497 chr2L 21953815 21953824 chr2L 21954715 21954725 4 900 22.5 21.5 22.0 0.2 910 chr2L 21953815 intergenic not near genes chr2L 21954270 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_4_21950001 chr2L_21950001 D20-c2 498 chr2L 21981682 21981715 chr2L 21990848 21990881 roo 14 9166 3.0 5.5 4.2 2.7 9199 chr2L 21981682 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_14_21985001 chr2L_21985001 D20-c2 499 chr2L 21996946 21996958 chr2L 21997028 21997040 4 82 5.0 5.5 5.2 0.6 94 chr2L 21996946 intergenic not near genes chr2L 21996993 intergenic not near genes chr2L 21997040 intergenic not near genes chr2L_4_21995001 chr2L_21995001 D20-c2 500 chr2L 22035977 22036002 chr2L 22036104 22036129 7 127 8.0 11.5 9.8 0.6 152 chr2L 22035977 intergenic not near genes chr2L 22036053 intergenic not near genes chr2L 22036129 intergenic not near genes chr2L_7_22035001 chr2L_22035001 D20-c2 501 chr2L 22178043 22178056 chr2L 22178129 22178142 4 86 8.0 5.5 6.8 0.5 99 chr2L 22178043 intron CG3635 + chr2L 22178092 intron CG3635 + chr2L 22178142 intron CG3635 + chr2L_4_22175001 chr2L_22175001 D20-c2 502 chr2L 22191970 22192058 chr2L 22192050 22192148 7 91 2.0 3.0 2.5 2.0 178 chr2L 22191970 intron Ir40a - chr2L 22192059 intron Ir40a - chr2L 22192148 intron Ir40a - chr2L_7_22190001 chr2L_22190001 D20-c2 503 chr2L 22192390 22192426 chr2L 22192469 22192505 8 79 12.5 10.5 11.5 0.6 115 chr2L 22192390 intron Ir40a - chr2L 22192448 intron Ir40a - chr2L 22192505 intron Ir40a - chr2L_8_22190001 chr2L_22190001 D20-c2 504 chr2L 22215918 22215927 chr2L 22216005 22216014 4 87 2.5 3.0 2.8 1.1 96 chr2L 22215918 intergenic not near genes chr2L 22215966 intergenic not near genes chr2L 22216014 intergenic not near genes chr2L_4_22215001 chr2L_22215001 D20-c2 505 chr2L 22239432 22239459 chr2L 22239508 22239541 10 81 9.0 10.5 9.8 0.9 109 chr2L 22239432 3` UTR CR43765 - chr2L 22239486 3` UTR CR43765 - chr2L 22239541 3` UTR CR43765 - chr2L_10_22235001 chr2L_22235001 D20-c2 506 chr2L 22258617 22258646 chr2L 22260742 22260771 G6 15 2125 3.0 4.5 3.8 3.1 2154 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260771 intergenic not near genes chr2L_15_22255001 chr2L_22255001 D20-c2 507 chr2L 22581968 22581999 chr2L 22583758 22583789 S-element 7 1790 1.0 1.5 1.2 3.2 1821 chr2L 22581968 intron CG17494 + chr2L 22582878 intron CG17494 + chr2L 22583789 intron CG17494 + chr2L_7_22580001 chr2L_22580001 D20-c2 508 chr2L 22679800 22679824 chr2L 22684573 22684597 F-element 7 4773 3.0 3.0 3.0 1.8 4797 chr2L 22679800 intron CG40006 - chr2L 22682198 intron CG40006 - chr2L 22684597 intron CG40006 - chr2L_7_22680001 chr2L_22680001 D20-c2 509 chr2L 22696857 22696882 chr2L 22696940 22696965 6 83 10.5 13.5 12.0 0.5 108 chr2L 22696857 intron CG40006 - chr2L 22696911 intron CG40006 - chr2L 22696965 intron CG40006 - chr2L_6_22695001 chr2L_22695001 D20-c2 510 chr2L 22776429 22776448 chr2L 22778219 22778238 S-element 6 1790 1.5 4.0 2.8 1.6 1809 chr2L 22776429 intergenic not near genes chr2L 22777334 intergenic not near genes chr2L 22778238 intergenic not near genes chr2L_6_22775001 chr2L_22775001 D20-c2 511 chr2L 23006692 23006707 chr2L 23007000 23007015 Osvaldo 4 308 12.5 11.0 11.8 0.3 323 chr2L 23006692 intron Cht3 - chr2L 23006854 intron Cht3 - chr2L 23007015 intron Cht3 - chr2L_4_23005001 chr2L_23005001 D20-c2 512 chr2R 529328 529348 chr2R 537954 537974 Max-element 4 8626 4.5 4.0 4.2 0.8 8646 chr2R 529328 intron CG40378 + chr2R 533651 intron CG40378 + chr2R 537974 intron CG40378 + chr2R_4_530001 chr2R_530001 D20-c2 513 chr2R 552759 552787 chr2R 553978 553989 1360 6 1216 5.0 15.5 10.2 0.5 1230 chr2R 552759 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553989 intron CG40378 + chr2R_6_550001 chr2R_550001 D20-c2 514 chr2R 1082370 1082385 chr2R 1087135 1087162 Doc 10 4776 9.5 4.0 6.8 1.3 4792 chr2R 1082370 intron rl + chr2R 1084766 intron rl + chr2R 1087162 intron rl + chr2R_10_1080001 chr2R_1080001 D20-c2 515 chr2R 1365860 1365889 chr2R 1365973 1366002 9 113 7.0 4.5 5.8 1.3 142 chr2R 1365860 intron l(2)41Ab + chr2R 1365931 intron l(2)41Ab + chr2R 1366002 intron l(2)41Ab + chr2R_9_1365001 chr2R_1365001 D20-c2 516 chr2R 2498986 2499016 chr2R 2508134 2508164 roo 6 9148 2.5 3.0 2.8 1.6 9178 chr2R 2498986 intron MFS17 - chr2R 2503575 intron MFS17 - chr2R 2508164 intron MFS17 - chr2R_6_2500001 chr2R_2500001 D20-c2 517 chr2R 2591548 2591558 chr2R 2594225 2594235 roo 5 2677 15.0 10.0 12.5 0.4 2687 chr2R 2591548 intergenic not near genes chr2R 2592892 intergenic not near genes chr2R 2594235 intergenic not near genes chr2R_5_2590001 chr2R_2590001 D20-c2 518 chr2R 2942289 2942317 chr2R 2942393 2942421 6 104 6.0 5.5 5.8 0.9 132 chr2R 2942289 intron Scp1 - chr2R 2942355 intron Scp1 - chr2R 2942421 intron Scp1 - chr2R_6_2940001 chr2R_2940001 D20-c2 519 chr2R 2944973 2945004 chr2R 2945056 2945087 6 78 10.5 12.0 11.2 0.5 114 chr2R 2944973 intron Scp1 - chr2R 2945030 intron Scp1 - chr2R 2945087 intron Scp1 - chr2R_6_2945001 chr2R_2945001 D20-c2 520 chr2R 3293750 3293773 chr2R 3293829 3293852 6 79 1.0 2.0 1.5 2.4 102 chr2R 3293750 intergenic not near genes chr2R 3293801 intergenic not near genes chr2R 3293852 intergenic not near genes chr2R_6_3290001 chr2R_3290001 D20-c2 521 chr2R 3587233 3587268 chr2R 3587311 3587346 11 78 5.0 6.5 5.8 1.6 113 chr2R 3587233 intergenic not near genes chr2R 3587290 intergenic not near genes chr2R 3587346 intergenic not near genes chr2R_11_3585001 chr2R_3585001 D20-c2 522 chr2R 4602838 4602873 chr2R 4603194 4603229 9 356 8.5 14.0 11.2 0.7 391 chr2R 4602838 intron p120ctn + chr2R 4603034 intron p120ctn + chr2R 4603229 intron p120ctn + chr2R_9_4600001 chr2R_4600001 D20-c2 523 chr2R 4622954 4622983 chr2R 4624114 4624143 1360 5 1160 5.0 8.0 6.5 0.7 1189 chr2R 4622954 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624143 intergenic not near genes chr2R_5_4620001 chr2R_4620001 D20-c2 524 chr2R 4750343 4750374 chr2R 4751501 4751532 1360 5 1158 4.0 7.0 5.5 0.8 1189 chr2R 4750343 intron conu + chr2R 4750938 intron conu + chr2R 4751532 intron conu + chr2R_5_4750001 chr2R_4750001 D20-c2 525 chr2R 4783250 4783270 chr2R 4783384 4783405 16 135 4.0 8.0 6.0 2.3 155 chr2R 4783250 intergenic not near genes chr2R 4783328 intergenic not near genes chr2R 4783405 intergenic not near genes chr2R_16_4780001 chr2R_4780001 D20-c2 526 chr2R 4908909 4908945 chr2R 4908998 4909034 11 89 13.0 11.0 12.0 0.8 125 chr2R 4908909 intergenic not near genes chr2R 4908972 intergenic not near genes chr2R 4909034 intergenic not near genes chr2R_11_4905001 chr2R_4905001 D20-c2 527 chr2R 4916092 4916121 chr2R 4916171 4916200 5 79 5.5 4.0 4.8 0.9 108 chr2R 4916092 intergenic not near genes chr2R 4916146 intergenic not near genes chr2R 4916200 intergenic not near genes chr2R_5_4915001 chr2R_4915001 D20-c2 528 chr2R 4933363 4933385 chr2R 4933928 4933950 8 564 15.5 18.5 17.0 0.4 587 chr2R 4933363 intron Ir41a + chr2R 4933656 intron Ir41a + chr2R 4933950 intron Ir41a + chr2R_8_4930001 chr2R_4930001 D20-c2 529 chr2R 4938498 4938529 chr2R 4938635 4938666 12 137 11.5 10.5 11.0 1.0 168 chr2R 4938498 intron Ir41a + chr2R 4938582 intron Ir41a + chr2R 4938666 intron Ir41a + chr2R_12_4935001 chr2R_4935001 D20-c2 530 chr2R 5019275 5019300 chr2R 5019362 5019387 5 87 5.0 4.0 4.5 0.9 112 chr2R 5019275 intron Ir41a + chr2R 5019331 intron Ir41a + chr2R 5019387 intron Ir41a + chr2R_5_5015001 chr2R_5015001 D20-c2 531 chr2R 5029037 5029066 chr2R 5029120 5029149 5 83 12.5 11.0 11.8 0.4 112 chr2R 5029037 intergenic not near genes chr2R 5029093 intergenic not near genes chr2R 5029149 intergenic not near genes chr2R_5_5025001 chr2R_5025001 D20-c2 532 chr2R 5075349 5075367 chr2R 5075766 5075784 4 417 7.0 8.0 7.5 0.5 435 chr2R 5075349 intergenic not near genes chr2R 5075566 intergenic not near genes chr2R 5075784 intergenic not near genes chr2R_4_5075001 chr2R_5075001 D20-c2 533 chr2R 5078679 5078710 chr2R 5078790 5078821 9 111 6.5 10.0 8.2 1.0 142 chr2R 5078679 intergenic not near genes chr2R 5078750 intergenic not near genes chr2R 5078821 intergenic not near genes chr2R_9_5075001 chr2R_5075001 D20-c2 534 chr2R 5080792 5080809 chr2R 5080884 5080901 5 92 6.5 4.5 5.5 0.8 109 chr2R 5080792 intergenic not near genes chr2R 5080846 intergenic not near genes chr2R 5080901 intergenic not near genes chr2R_5_5080001 chr2R_5080001 D20-c2 535 chr2R 5096666 5096686 chr2R 5096746 5096768 8 82 8.0 10.5 9.2 0.8 102 chr2R 5096666 intergenic not near genes chr2R 5096717 intergenic not near genes chr2R 5096768 intergenic not near genes chr2R_8_5095001 chr2R_5095001 D20-c2 536 chr2R 5103043 5103076 chr2R 5103126 5103159 10 83 13.5 11.5 12.5 0.7 116 chr2R 5103043 intergenic not near genes chr2R 5103101 intergenic not near genes chr2R 5103159 intergenic not near genes chr2R_10_5100001 chr2R_5100001 D20-c2 537 chr2R 5125247 5125270 chr2R 5125566 5125589 8 319 2.0 1.0 1.5 3.2 342 chr2R 5125247 intron gus - chr2R 5125418 intron gus - chr2R 5125589 intron gus - chr2R_8_5125001 chr2R_5125001 D20-c2 538 chr2R 5140019 5140048 chr2R 5140139 5140168 5 120 4.0 11.5 7.8 0.6 149 chr2R 5140019 intergenic not near genes chr2R 5140094 intergenic not near genes chr2R 5140168 intergenic not near genes chr2R_5_5140001 chr2R_5140001 D20-c2 539 chr2R 5150590 5150619 chr2R 5150673 5150702 5 83 12.0 10.5 11.2 0.4 112 chr2R 5150590 intron Atf6 + chr2R 5150646 intron Atf6 + chr2R 5150702 intron Atf6 + chr2R_5_5150001 chr2R_5150001 D20-c2 540 chr2R 5237349 5237371 chr2R 5237432 5237454 8 83 1.0 0.0 0.5 5.3 105 chr2R 5237349 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237454 intron Nipped-A - chr2R_8_5235001 chr2R_5235001 D20-c2 541 chr2R 5301851 5301874 chr2R 5301931 5301954 5 80 16.0 11.5 13.8 0.3 103 chr2R 5301851 intergenic not near genes chr2R 5301902 intergenic not near genes chr2R 5301954 intergenic not near genes chr2R_5_5300001 chr2R_5300001 D20-c2 542 chr2R 5417992 5418026 chr2R 5420624 5420659 Burdock 16 2633 2.5 2.0 2.2 5.0 2667 chr2R 5417992 intron laccase2 + chr2R 5419326 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_16_5415001 chr2R_5415001 D20-c2 543 chr2R 5455772 5455805 chr2R 5455851 5455884 6 79 9.0 10.0 9.5 0.6 112 chr2R 5455772 3` UTR laccase2 + chr2R 5455828 3` UTR laccase2 + chr2R 5455884 3` UTR laccase2 + chr2R_6_5455001 chr2R_5455001 D20-c2 544 chr2R 5472369 5472394 chr2R 5472465 5472489 9 95 1.0 4.5 2.8 2.4 120 chr2R 5472369 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472489 intron CG30440 - chr2R_9_5470001 chr2R_5470001 D20-c2 545 chr2R 5509516 5509547 chr2R 5509613 5509644 4 94 8.5 9.5 9.0 0.4 128 chr2R 5509516 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509644 intron CG30438 + chr2R_4_5505001 chr2R_5505001 D20-c2 546 chr2R 5540088 5540107 chr2R 5540408 5540424 4 319 5.5 6.0 5.8 0.6 336 chr2R 5540088 intron CG30438 + chr2R 5540256 intron CG30438 + chr2R 5540424 intron CG30438 + chr2R_4_5540001 chr2R_5540001 D20-c2 547 chr2R 5653358 5653375 chr2R 5653458 5653475 4 100 8.0 7.5 7.8 0.5 117 chr2R 5653358 intergenic CG1344 + chr2R 5653416 intergenic CG1344 + chr2R 5653475 intergenic CG1344 + chr2R_4_5650001 chr2R_5650001 D20-c2 548 chr2R 5771459 5771487 chr2R 5771541 5771569 5 82 11.5 13.0 12.2 0.4 110 chr2R 5771459 intron Gp210 + chr2R 5771514 intron Gp210 + chr2R 5771569 intron Gp210 + chr2R_5_5770001 chr2R_5770001 D20-c2 549 chr2R 5790462 5790497 chr2R 5790548 5790583 7 86 5.0 5.0 5.0 1.2 121 chr2R 5790462 intergenic not near genes chr2R 5790522 intergenic not near genes chr2R 5790583 intergenic not near genes chr2R_7_5790001 chr2R_5790001 D20-c2 550 chr2R 5827593 5827624 chr2R 5827702 5827740 8 115 5.5 6.0 5.8 1.2 147 chr2R 5827593 intron dpr12 + chr2R 5827666 intron dpr12 + chr2R 5827740 intron dpr12 + chr2R_8_5825001 chr2R_5825001 D20-c2 551 chr2R 5833761 5833795 chr2R 5833865 5833899 6 104 14.5 13.5 14.0 0.4 138 chr2R 5833761 intron dpr12 + chr2R 5833830 intron dpr12 + chr2R 5833899 intron dpr12 + chr2R_6_5830001 chr2R_5830001 D20-c2 552 chr2R 5869277 5869308 chr2R 5874354 5874385 flea 11 5076 4.5 4.5 4.5 2.0 5108 chr2R 5869277 intergenic not near genes chr2R 5871831 intergenic not near genes chr2R 5874385 intergenic not near genes chr2R_11_5870001 chr2R_5870001 D20-c2 553 chr2R 5876870 5876903 chr2R 5876973 5877006 8 103 16.5 16.0 16.2 0.5 136 chr2R 5876870 intergenic not near genes chr2R 5876938 intergenic not near genes chr2R 5877006 intergenic not near genes chr2R_8_5875001 chr2R_5875001 D20-c2 554 chr2R 5878922 5878944 chr2R 5879003 5879025 5 81 3.5 2.5 3.0 1.2 103 chr2R 5878922 intergenic CG44438 - chr2R 5878974 intergenic CG44438 - chr2R 5879025 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 D20-c2 555 chr2R 5902154 5902183 chr2R 5909714 5909743 17.6 9 7560 3.0 1.0 2.0 3.0 7589 chr2R 5902154 intron CG43366 + chr2R 5905948 intron CG43366 + chr2R 5909743 intron CG43366 + chr2R_9_5905001 chr2R_5905001 D20-c2 556 chr2R 6033440 6033471 chr2R 6033526 6033557 4 86 7.5 8.5 8.0 0.4 117 chr2R 6033440 intron SCAP - chr2R 6033498 intron SCAP - chr2R 6033557 intron SCAP - chr2R_4_6030001 chr2R_6030001 D20-c2 557 chr2R 6096714 6096751 chr2R 6101913 6101950 BS 13 5199 6.5 3.5 5.0 2.2 5236 chr2R 6096714 intron EcR - chr2R 6099332 intron EcR - chr2R 6101950 intron EcR - chr2R_13_6095001 chr2R_6095001 D20-c2 558 chr2R 6151518 6151529 chr2R 6151595 6151606 5 77 3.0 1.5 2.2 1.6 88 chr2R 6151518 intron EcR - chr2R 6151562 intron EcR - chr2R 6151606 intron EcR - chr2R_5_6150001 chr2R_6150001 D20-c2 559 chr2R 6178119 6178138 chr2R 6178246 6178265 6 127 1.0 1.0 1.0 3.0 146 chr2R 6178119 intergenic not near genes chr2R 6178192 intergenic not near genes chr2R 6178265 intergenic not near genes chr2R_6_6175001 chr2R_6175001 D20-c2 560 chr2R 6194684 6194704 chr2R 6194768 6194788 8 84 2.5 4.0 3.2 1.9 104 chr2R 6194684 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194788 intron Ptr - chr2R_8_6190001 chr2R_6190001 D20-c2 561 chr2R 6539821 6539856 chr2R 6539945 6539972 5 119 2.0 0.5 1.2 2.3 151 chr2R 6539821 intron jing + chr2R 6539896 intron jing + chr2R 6539972 intron jing + chr2R_5_6535001 chr2R_6535001 D20-c2 562 chr2R 6546716 6546752 chr2R 6546818 6546854 19 102 3.5 1.5 2.5 5.4 138 chr2R 6546716 intron jing + chr2R 6546785 intron jing + chr2R 6546854 intron jing + chr2R_19_6545001 chr2R_6545001 D20-c2 563 chr2R 6603937 6603967 chr2R 6604030 6604060 5 93 2.5 1.5 2.0 1.7 123 chr2R 6603937 intron jing + chr2R 6603998 intron jing + chr2R 6604060 intron jing + chr2R_5_6600001 chr2R_6600001 D20-c2 564 chr2R 6633204 6633232 chr2R 6633282 6633310 9 78 2.0 2.0 2.0 3.0 106 chr2R 6633204 intergenic Vha16-1 -,Trap1 - chr2R 6633257 intergenic Vha16-1 -,Trap1 - chr2R 6633310 intergenic Vha16-1 -,Trap1 - chr2R_9_6630001 chr2R_6630001 D20-c2 565 chr2R 6646797 6646822 chr2R 6647071 6647096 5 274 3.5 0.5 2.0 1.7 299 chr2R 6646797 intergenic not near genes chr2R 6646946 intergenic not near genes chr2R 6647096 intergenic not near genes chr2R_5_6645001 chr2R_6645001 D20-c2 566 chr2R 6699600 6699622 chr2R 6699686 6699708 4 86 2.5 2.0 2.2 1.2 108 chr2R 6699600 intergenic Rab2 + chr2R 6699654 intergenic Rab2 + chr2R 6699708 intergenic Rab2 + chr2R_4_6695001 chr2R_6695001 D20-c2 567 chr2R 6941473 6941509 chr2R 6941598 6941634 20 125 4.5 4.5 4.5 3.6 161 chr2R 6941473 intron mim - chr2R 6941554 intron mim - chr2R 6941634 intron mim - chr2R_20_6940001 chr2R_6940001 D20-c2 568 chr2R 6948100 6948120 chr2R 6951883 6951903 9 3783 16.5 30.5 23.5 0.4 3803 chr2R 6948100 intron,intron mim -,CheB42c - chr2R 6950002 intron,intron,intron mim -,CheB42c -,CheB42a + chr2R 6951903 intron,intron,intron mim -,CheB42c -,ppk25 + chr2R_9_6950001 chr2R_6950001 D20-c2 569 chr2R 7103389 7103413 chr2R 7103466 7103475 6 74 3.0 3.0 3.0 1.5 86 chr2R 7103389 intron esn + chr2R 7103432 intron esn + chr2R 7103475 intron esn + chr2R_6_7100001 chr2R_7100001 D20-c2 570 chr2R 7160566 7160584 chr2R 7160645 7160663 8 79 1.0 7.0 4.0 1.6 97 chr2R 7160566 intron pk + chr2R 7160614 intron pk + chr2R 7160663 intron pk + chr2R_8_7160001 chr2R_7160001 D20-c2 571 chr2R 7196566 7196584 chr2R 7201342 7201360 F-element 5 4776 3.0 3.0 3.0 1.2 4794 chr2R 7196566 intron pk + chr2R 7198963 intron pk + chr2R 7201360 intron pk + chr2R_5_7195001 chr2R_7195001 D20-c2 572 chr2R 7235825 7235851 chr2R 7240912 7240944 jockey 14 5092 3.5 3.0 3.2 3.3 5119 chr2R 7235825 intergenic not near genes chr2R 7238384 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_14_7235001 chr2R_7235001 D20-c2 573 chr2R 7328129 7328153 chr2R 7328241 7328265 6 112 1.0 1.0 1.0 3.0 136 chr2R 7328129 intron,intron Dscam1 -,CR45129 + chr2R 7328197 intron,intron Dscam1 -,CR45129 + chr2R 7328265 intron,intron Dscam1 -,CR45129 + chr2R_6_7325001 chr2R_7325001 D20-c2 574 chr2R 7371744 7371776 chr2R 7371849 7371881 8 105 13.5 13.5 13.5 0.6 137 chr2R 7371744 intron Dscam1 - chr2R 7371812 intron Dscam1 - chr2R 7371881 intron Dscam1 - chr2R_8_7370001 chr2R_7370001 D20-c2 575 chr2R 7418144 7418162 chr2R 7418224 7418242 4 80 9.5 9.5 9.5 0.4 98 chr2R 7418144 intergenic not near genes chr2R 7418193 intergenic not near genes chr2R 7418242 intergenic not near genes chr2R_4_7415001 chr2R_7415001 D20-c2 576 chr2R 7434893 7434918 chr2R 7439195 7439220 Juan 10 4302 3.5 4.5 4.0 2.0 4327 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439220 intergenic not near genes chr2R_10_7435001 chr2R_7435001 D20-c2 577 chr2R 7608416 7608431 chr2R 7613620 7613635 I-element 4 5204 3.5 0.0 1.8 1.4 5219 chr2R 7608416 intron CG1358 - chr2R 7611026 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_4_7610001 chr2R_7610001 D20-c2 578 chr2R 7642875 7642883 chr2R 7642956 7642963 4 81 15.0 17.5 16.2 0.2 88 chr2R 7642875 intron CG43340 + chr2R 7642919 intron CG43340 + chr2R 7642963 intron CG43340 + chr2R_4_7640001 chr2R_7640001 D20-c2 579 chr2R 7677429 7677460 chr2R 7677560 7677569 4 122 10.5 10.0 10.2 0.4 140 chr2R 7677429 3` UTR CG1399 - chr2R 7677499 3` UTR CG1399 - chr2R 7677569 3` UTR CG1399 - chr2R_4_7675001 chr2R_7675001 D20-c2 580 chr2R 7692012 7692038 chr2R 7692094 7692120 7 82 1.0 2.5 1.8 2.5 108 chr2R 7692012 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692120 intron CG1399 - chr2R_7_7690001 chr2R_7690001 D20-c2 581 chr2R 7760288 7760307 chr2R 7760426 7760445 4 138 8.0 14.0 11.0 0.3 157 chr2R 7760288 intron,intron CG30497 -,CG45093 - chr2R 7760366 intron,intron CG30497 -,CG45093 - chr2R 7760445 intron,intron CG30497 -,CG45093 - chr2R_4_7760001 chr2R_7760001 D20-c2 582 chr2R 7769736 7769769 chr2R 7769814 7769847 7 78 6.0 7.0 6.5 0.9 111 chr2R 7769736 intron,intron CG30497 -,CG45093 - chr2R 7769792 intron,intron CG30497 -,CG45093 - chr2R 7769847 intron,intron CG30497 -,CG45093 - chr2R_7_7765001 chr2R_7765001 D20-c2 583 chr2R 7815672 7815702 chr2R 7822142 7822172 Burdock 12 6469 2.0 5.5 3.8 2.5 6500 chr2R 7815672 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822172 3` UTR cathD - chr2R_12_7815001 chr2R_7815001 D20-c2 584 chr2R 7842191 7842222 chr2R 7842280 7842311 13 89 8.5 6.5 7.5 1.5 120 chr2R 7842191 intron Dgk - chr2R 7842251 intron Dgk - chr2R 7842311 intron Dgk - chr2R_13_7840001 chr2R_7840001 D20-c2 585 chr2R 7869188 7869217 chr2R 7873975 7874004 Doc 8 4787 2.5 6.0 4.2 1.5 4816 chr2R 7869188 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874004 intron Dgk - chr2R_8_7870001 chr2R_7870001 D20-c2 586 chr2R 7897137 7897149 chr2R 7897227 7897239 5 90 5.0 15.0 10.0 0.5 102 chr2R 7897137 intron CG30377 + chr2R 7897188 intron CG30377 + chr2R 7897239 intron CG30377 + chr2R_5_7895001 chr2R_7895001 D20-c2 587 chr2R 7920165 7920194 chr2R 7920253 7920282 7 88 28.0 26.5 27.2 0.2 117 chr2R 7920165 exon Cul1 + chr2R 7920224 exon Cul1 + chr2R 7920282 exon Cul1 + chr2R_7_7920001 chr2R_7920001 D20-c2 588 chr2R 8015649 8015680 chr2R 8017673 8017704 17 2024 4.0 6.0 5.0 2.8 2055 chr2R 8015649 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017704 intergenic not near genes chr2R_17_8015001 chr2R_8015001 D20-c2 589 chr2R 8051212 8051240 chr2R 8051298 8051326 7 86 9.0 9.0 9.0 0.7 114 chr2R 8051212 intergenic not near genes chr2R 8051269 intergenic not near genes chr2R 8051326 intergenic not near genes chr2R_7_8050001 chr2R_8050001 D20-c2 590 chr2R 8089259 8089283 chr2R 8089346 8089370 6 87 10.0 9.5 9.8 0.6 111 chr2R 8089259 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089370 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 D20-c2 591 chr2R 8105931 8105952 chr2R 8106023 8106044 6 92 14.5 13.0 13.8 0.4 113 chr2R 8105931 5` UTR Cul4 - chr2R 8105988 intron Cul4 - chr2R 8106044 5` UTR Cul4 - chr2R_6_8105001 chr2R_8105001 D20-c2 592 chr2R 8155579 8155614 chr2R 8155669 8155704 17 90 3.5 2.5 3.0 4.2 125 chr2R 8155579 intron,intron Lpin -,kermit - chr2R 8155642 intron,intron Lpin -,kermit - chr2R 8155704 intron,intron Lpin -,kermit - chr2R_17_8155001 chr2R_8155001 D20-c2 593 chr2R 8160933 8160951 chr2R 8161024 8161042 1360 4 91 18.0 25.0 21.5 0.2 109 chr2R 8160933 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161042 intron CG8708 - chr2R_4_8160001 chr2R_8160001 D20-c2 594 chr2R 8191881 8191915 chr2R 8191970 8192004 6 87 5.0 4.0 4.5 1.1 123 chr2R 8191881 intron LRP1 + chr2R 8191942 intron LRP1 + chr2R 8192004 intron LRP1 + chr2R_6_8190001 chr2R_8190001 D20-c2 595 chr2R 8330862 8330883 chr2R 8331349 8331370 roo 9 487 7.0 3.0 5.0 1.5 508 chr2R 8330862 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331370 intron pdm3 + chr2R_9_8330001 chr2R_8330001 D20-c2 596 chr2R 8398207 8398243 chr2R 8402989 8403025 Doc 27 4782 6.0 5.5 5.8 4.0 4818 chr2R 8398207 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_27_8400001 chr2R_8400001 D20-c2 597 chr2R 8419359 8419387 chr2R 8419443 8419471 14 84 8.5 11.0 9.8 1.3 112 chr2R 8419359 intergenic not near genes chr2R 8419415 intergenic not near genes chr2R 8419471 intergenic not near genes chr2R_14_8415001 chr2R_8415001 D20-c2 598 chr2R 8397822 8397850 chr2R 8460362 8460389 15 62541 34.0 40.0 37.0 0.4 62567 chr2R 8397822 exon CG2121 - chr2R 8429106 intergenic not near genes chr2R 8460389 exon Mal-A4 + chr2R_15_8425001 chr2R_8425001 D20-c2 599 chr2R 8512765 8512798 chr2R 8512845 8512878 7 80 17.5 19.5 18.5 0.4 113 chr2R 8512765 intron mtt - chr2R 8512822 intron mtt - chr2R 8512878 intron mtt - chr2R_7_8510001 chr2R_8510001 D20-c2 600 chr2R 8536214 8536224 chr2R 8536447 8536457 5 233 10.5 11.5 11.0 0.4 243 chr2R 8536214 intergenic not near genes chr2R 8536336 intergenic not near genes chr2R 8536457 intergenic not near genes chr2R_5_8535001 chr2R_8535001 D20-c2 601 chr2R 8722769 8722794 chr2R 8723004 8723036 pogo 9 241 3.0 5.5 4.2 1.7 267 chr2R 8722769 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_9_8720001 chr2R_8720001 D20-c2 602 chr2R 8764120 8764131 chr2R 8764270 8764281 4 150 7.5 13.0 10.2 0.4 161 chr2R 8764120 intergenic not near genes chr2R 8764200 intergenic not near genes chr2R 8764281 intergenic not near genes chr2R_4_8760001 chr2R_8760001 D20-c2 603 chr2R 8777932 8777946 chr2R 8784137 8784151 diver 8 6205 0.0 2.5 1.2 3.6 6219 chr2R 8777932 intergenic not near genes chr2R 8781042 intergenic not near genes chr2R 8784151 intergenic not near genes chr2R_8_8780001 chr2R_8780001 D20-c2 604 chr2R 8835447 8835455 chr2R 8835524 8835532 4 77 11.0 9.0 10.0 0.4 85 chr2R 8835447 intron sns + chr2R 8835490 intron sns + chr2R 8835532 intron sns + chr2R_4_8835001 chr2R_8835001 D20-c2 605 chr2R 8960456 8960481 chr2R 8960609 8960634 5 153 11.0 10.0 10.5 0.4 178 chr2R 8960456 exon babo + chr2R 8960545 3` UTR babo + chr2R 8960634 3` UTR babo + chr2R_5_8960001 chr2R_8960001 D20-c2 606 chr2R 8976199 8976223 chr2R 8976289 8976313 6 90 9.0 6.5 7.8 0.7 114 chr2R 8976199 intron CG8213 - chr2R 8976256 intron CG8213 - chr2R 8976313 intron CG8213 - chr2R_6_8975001 chr2R_8975001 D20-c2 607 chr2R 9033530 9033547 chr2R 9033632 9033647 5 101 15.5 16.5 16.0 0.3 117 chr2R 9033530 intergenic not near genes chr2R 9033588 intergenic not near genes chr2R 9033647 intergenic not near genes chr2R_5_9030001 chr2R_9030001 D20-c2 608 chr2R 9075903 9075930 chr2R 9076039 9076066 8 134 8.5 4.5 6.5 1.1 163 chr2R 9075903 exon ana + chr2R 9075984 intron ana + chr2R 9076066 intron ana + chr2R_8_9075001 chr2R_9075001 D20-c2 609 chr2R 9079420 9079439 chr2R 9079527 9079546 4 107 8.0 6.5 7.2 0.5 126 chr2R 9079420 intron CG8083 + chr2R 9079483 intron CG8083 + chr2R 9079546 intron CG8083 + chr2R_4_9075001 chr2R_9075001 D20-c2 610 chr2R 9151299 9151330 chr2R 9157770 9157801 Burdock 12 6471 4.0 1.0 2.5 3.4 6502 chr2R 9151299 exon CG30345 + chr2R 9154550 intergenic not near genes chr2R 9157801 intergenic CG8008 - chr2R_12_9150001 chr2R_9150001 D20-c2 611 chr2R 9212693 9212724 chr2R 9213180 9213210 roo 16 487 5.0 10.0 7.5 1.9 517 chr2R 9212693 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213210 5` UTR CR45309 + chr2R_16_9210001 chr2R_9210001 D20-c2 612 chr2R 9227870 9227889 chr2R 9227958 9227977 5 88 10.5 9.5 10.0 0.5 107 chr2R 9227870 3` UTR hig - chr2R 9227924 3` UTR hig - chr2R 9227977 3` UTR hig - chr2R_5_9225001 chr2R_9225001 D20-c2 613 chr2R 9230228 9230235 chr2R 9230309 9230316 5 81 20.5 22.0 21.2 0.2 88 chr2R 9230228 intron hig - chr2R 9230272 intron hig - chr2R 9230316 exon hig - chr2R_5_9230001 chr2R_9230001 D20-c2 614 chr2R 9256047 9256081 chr2R 9256131 9256165 12 84 21.0 22.5 21.8 0.5 118 chr2R 9256047 intron Pkn - chr2R 9256106 intron Pkn - chr2R 9256165 intron Pkn - chr2R_12_9255001 chr2R_9255001 D20-c2 615 chr2R 9282036 9282076 chr2R 9286078 9286105 11 4030 24.0 36.5 30.2 0.4 4069 chr2R 9282036 intron Pkn - chr2R 9284070 5` UTR Pkn - chr2R 9286105 exon CG2063 - chr2R_11_9280001 chr2R_9280001 D20-c2 616 chr2R 9330005 9330027 chr2R 9330092 9330114 5 87 12.0 15.0 13.5 0.3 109 chr2R 9330005 intron,intron CG13739 -,CG13954 - chr2R 9330060 intron,intron CG13739 -,CG13954 - chr2R 9330114 intron,intron CG13739 -,CG13954 - chr2R_5_9330001 chr2R_9330001 D20-c2 617 chr2R 9368128 9368154 chr2R 9368205 9368231 4 77 10.0 7.0 8.5 0.4 103 chr2R 9368128 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368231 intron CG13954 - chr2R_4_9365001 chr2R_9365001 D20-c2 618 chr2R 9391055 9391084 chr2R 9391617 9391646 5 562 7.0 17.5 12.2 0.4 591 chr2R 9391055 intron l(2)03659 + chr2R 9391350 exon l(2)03659 + chr2R 9391646 exon l(2)03659 + chr2R_5_9390001 chr2R_9390001 D20-c2 619 chr2R 9429797 9429824 chr2R 9429902 9429930 5 106 12.0 13.5 12.8 0.4 133 chr2R 9429797 intron Pdk + chr2R 9429864 intron Pdk + chr2R 9429930 intron Pdk + chr2R_5_9425001 chr2R_9425001 D20-c2 620 chr2R 9466672 9466687 chr2R 9466754 9466769 5 82 4.0 8.0 6.0 0.7 97 chr2R 9466672 intron Camta + chr2R 9466720 intron Camta + chr2R 9466769 intron Camta + chr2R_5_9465001 chr2R_9465001 D20-c2 621 chr2R 9510666 9510692 chr2R 9510783 9510809 5 117 10.0 4.5 7.2 0.6 143 chr2R 9510666 intron brp + chr2R 9510738 intron brp + chr2R 9510809 intron brp + chr2R_5_9510001 chr2R_9510001 D20-c2 622 chr2R 9561826 9561850 chr2R 9561915 9561938 8 89 0.0 1.5 0.8 4.4 112 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561938 3` UTR,intron CR45281 -,CG1809 + chr2R_8_9560001 chr2R_9560001 D20-c2 623 chr2R 9629587 9629616 chr2R 9629769 9629798 6 182 4.0 1.0 2.5 1.7 211 chr2R 9629587 intron Mmp2 - chr2R 9629692 intron Mmp2 - chr2R 9629798 intron Mmp2 - chr2R_6_9625001 chr2R_9625001 D20-c2 624 chr2R 9669134 9669160 chr2R 9669236 9669262 10 102 8.0 4.0 6.0 1.4 128 chr2R 9669134 intron Mmp2 - chr2R 9669198 intron Mmp2 - chr2R 9669262 intron Mmp2 - chr2R_10_9665001 chr2R_9665001 D20-c2 625 chr2R 9671184 9671212 chr2R 9671262 9671290 10 78 1.0 0.5 0.8 5.6 106 chr2R 9671184 intron Mmp2 - chr2R 9671237 intron Mmp2 - chr2R 9671290 intron Mmp2 - chr2R_10_9670001 chr2R_9670001 D20-c2 626 chr2R 9699410 9699442 chr2R 9699498 9699530 12 88 2.0 2.5 2.2 3.8 120 chr2R 9699410 intergenic not near genes chr2R 9699470 intergenic not near genes chr2R 9699530 intergenic not near genes chr2R_12_9695001 chr2R_9695001 D20-c2 627 chr2R 9707228 9707246 chr2R 9707325 9707343 12 97 3.5 8.5 6.0 1.7 115 chr2R 9707228 exon CG1773 + chr2R 9707286 exon CG1773 + chr2R 9707343 exon CG1773 + chr2R_12_9705001 chr2R_9705001 D20-c2 628 chr2R 9725049 9725078 chr2R 9725129 9725158 7 80 3.0 2.5 2.8 1.8 109 chr2R 9725049 intron sqa - chr2R 9725104 intron sqa - chr2R 9725158 intron sqa - chr2R_7_9725001 chr2R_9725001 D20-c2 629 chr2R 9726613 9726637 chr2R 9734165 9734189 17.6 7 7552 6.5 2.0 4.2 1.3 7576 chr2R 9726613 intron sqa - chr2R 9730401 intron sqa - chr2R 9734189 intron sqa - chr2R_7_9730001 chr2R_9730001 D20-c2 630 chr2R 9871047 9871074 chr2R 9871534 9871561 roo 12 487 1.0 7.0 4.0 2.4 514 chr2R 9871047 intron cbx - chr2R 9871304 intron cbx - chr2R 9871561 intron,5` UTR cbx -,CG18446 + chr2R_12_9870001 chr2R_9870001 D20-c2 631 chr2R 9945433 9945469 chr2R 9945630 9945666 BS 14 197 2.5 3.0 2.8 3.7 233 chr2R 9945433 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945666 intron Mef2 - chr2R_14_9945001 chr2R_9945001 D20-c2 632 chr2R 10005558 10005569 chr2R 10005656 10005667 4 98 4.0 2.0 3.0 1.0 109 chr2R 10005558 intron Pka-R2 - chr2R 10005612 intron Pka-R2 - chr2R 10005667 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 D20-c2 633 chr2R 10005845 10005879 chr2R 10007011 10007045 1360 13 1166 4.5 5.5 5.0 2.2 1200 chr2R 10005845 intron Pka-R2 - chr2R 10006445 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_13_10005001 chr2R_10005001 D20-c2 634 chr2R 10008567 10008596 chr2R 10008646 10008685 7 79 3.0 0.0 1.5 2.8 118 chr2R 10008567 intron Pka-R2 - chr2R 10008626 intron Pka-R2 - chr2R 10008685 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 D20-c2 635 chr2R 10132205 10132222 chr2R 10132286 10132303 6 81 1.5 4.5 3.0 1.5 98 chr2R 10132205 intron gem + chr2R 10132254 intron gem + chr2R 10132303 intron gem + chr2R_6_10130001 chr2R_10130001 D20-c2 636 chr2R 10167107 10167146 chr2R 10167184 10167201 21 75 7.5 9.5 8.5 2.2 94 chr2R 10167107 intron KCNQ - chr2R 10167154 intron KCNQ - chr2R 10167201 intron KCNQ - chr2R_21_10165001 chr2R_10165001 D20-c2 637 chr2R 10171120 10171145 chr2R 10171205 10171230 4 85 0.5 6.0 3.2 1.0 110 chr2R 10171120 intron KCNQ - chr2R 10171175 intron KCNQ - chr2R 10171230 intron KCNQ - chr2R_4_10170001 chr2R_10170001 D20-c2 638 chr2R 10172634 10172666 chr2R 10172747 10172779 7 113 1.5 0.0 0.8 3.9 145 chr2R 10172634 intron KCNQ - chr2R 10172706 intron KCNQ - chr2R 10172779 intron KCNQ - chr2R_7_10170001 chr2R_10170001 D20-c2 639 chr2R 10176119 10176153 chr2R 10176199 10176233 13 80 4.5 4.0 4.2 2.5 114 chr2R 10176119 intron KCNQ - chr2R 10176176 intron KCNQ - chr2R 10176233 intron KCNQ - chr2R_13_10175001 chr2R_10175001 D20-c2 640 chr2R 10176878 10176902 chr2R 10186046 10186070 roo 8 9168 2.5 3.0 2.8 2.1 9192 chr2R 10176878 intron KCNQ - chr2R 10181474 intron KCNQ - chr2R 10186070 intron KCNQ - chr2R_8_10180001 chr2R_10180001 D20-c2 641 chr2R 10190446 10190466 chr2R 10190531 10190551 9 85 5.0 6.0 5.5 1.4 105 chr2R 10190446 intron KCNQ - chr2R 10190498 intron KCNQ - chr2R 10190551 intron KCNQ - chr2R_9_10190001 chr2R_10190001 D20-c2 642 chr2R 10216192 10216222 chr2R 10216271 10216301 7 79 1.5 1.5 1.5 2.8 109 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216301 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 D20-c2 643 chr2R 10225734 10225751 chr2R 10225817 10225834 10 83 3.0 4.0 3.5 2.2 100 chr2R 10225734 intron,intron CG12912 -,Hr46 - chr2R 10225784 intron,intron CG12912 -,Hr46 - chr2R 10225834 intron,intron CG12912 -,Hr46 - chr2R_10_10225001 chr2R_10225001 D20-c2 644 chr2R 10266492 10266528 chr2R 10266584 10266620 9 89 3.5 3.5 3.5 2.0 128 chr2R 10266492 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266620 intron CG12910 + chr2R_9_10265001 chr2R_10265001 D20-c2 645 chr2R 10313319 10313354 chr2R 10313408 10313443 13 89 5.0 3.0 4.0 2.6 124 chr2R 10313319 intergenic not near genes chr2R 10313381 intergenic not near genes chr2R 10313443 intergenic Ndg + chr2R_13_10310001 chr2R_10310001 D20-c2 646 chr2R 10352680 10352703 chr2R 10352758 10352781 10 78 0.5 3.0 1.8 3.6 101 chr2R 10352680 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352730 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352781 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_10_10350001 chr2R_10350001 D20-c2 647 chr2R 10354553 10354583 chr2R 10354640 10354670 9 87 1.0 2.0 1.5 3.6 117 chr2R 10354553 intron CG42732 - chr2R 10354612 intron CG42732 - chr2R 10354670 intron CG42732 - chr2R_9_10350001 chr2R_10350001 D20-c2 648 chr2R 10363863 10363893 chr2R 10363943 10363973 11 80 2.5 2.0 2.2 3.4 110 chr2R 10363863 intron CG42732 - chr2R 10363918 intron CG42732 - chr2R 10363973 intron CG42732 - chr2R_11_10360001 chr2R_10360001 D20-c2 649 chr2R 10374777 10374802 chr2R 10374857 10374882 15 80 0.0 3.0 1.5 6.0 105 chr2R 10374777 intron CG42732 - chr2R 10374830 intron CG42732 - chr2R 10374882 intron CG42732 - chr2R_15_10370001 chr2R_10370001 D20-c2 650 chr2R 10387985 10388003 chr2R 10388083 10388101 8 98 0.0 9.5 4.8 1.4 116 chr2R 10387985 intron CG42732 - chr2R 10388043 intron CG42732 - chr2R 10388101 intron CG42732 - chr2R_8_10385001 chr2R_10385001 D20-c2 651 chr2R 10411825 10411836 chr2R 10411908 10411919 4 83 0.0 3.0 1.5 1.6 94 chr2R 10411825 intron CG42732 - chr2R 10411872 intron CG42732 - chr2R 10411919 intron CG42732 - chr2R_4_10410001 chr2R_10410001 D20-c2 652 chr2R 10429023 10429046 chr2R 10429101 10429124 9 78 2.0 0.0 1.0 4.5 101 chr2R 10429023 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429124 intergenic not near genes chr2R_9_10425001 chr2R_10425001 D20-c2 653 chr2R 10558222 10558246 chr2R 10558299 10558323 10 77 4.0 5.5 4.8 1.7 101 chr2R 10558222 5` UTR psq + chr2R 10558272 5` UTR psq + chr2R 10558323 5` UTR psq + chr2R_10_10555001 chr2R_10555001 D20-c2 654 chr2R 10574629 10574640 chr2R 10574712 10574723 4 83 2.0 3.0 2.5 1.1 94 chr2R 10574629 intron psq + chr2R 10574676 intron psq + chr2R 10574723 intron psq + chr2R_4_10570001 chr2R_10570001 D20-c2 655 chr2R 10585576 10585591 chr2R 10594160 10594175 Tirant 9 8583 1.0 5.0 3.0 2.2 8599 chr2R 10585576 intron psq + chr2R 10589876 intron psq + chr2R 10594175 intron psq + chr2R_9_10585001 chr2R_10585001 D20-c2 656 chr2R 10622350 10622368 chr2R 10637116 10637134 mdg1 6 14766 2.0 2.5 2.2 1.9 14784 chr2R 10622350 intron CG11883 + chr2R 10629742 intron CG11883 + chr2R 10637134 intron CG11883 + chr2R_6_10625001 chr2R_10625001 D20-c2 657 chr2R 10644059 10644084 chr2R 10644138 10644163 11 79 4.5 3.0 3.8 2.3 104 chr2R 10644059 intron Git - chr2R 10644111 intron Git - chr2R 10644163 intron Git - chr2R_11_10640001 chr2R_10640001 D20-c2 658 chr2R 10653212 10653229 chr2R 10653287 10653309 5 79 2.5 2.5 2.5 1.4 97 chr2R 10653212 intergenic not near genes chr2R 10653260 intergenic not near genes chr2R 10653309 intergenic not near genes chr2R_5_10650001 chr2R_10650001 D20-c2 659 chr2R 10781398 10781421 chr2R 10781759 10781782 8 361 2.5 4.5 3.5 1.8 384 chr2R 10781398 intron CG33144 - chr2R 10781590 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_8_10780001 chr2R_10780001 D20-c2 660 chr2R 10790139 10790173 chr2R 10790228 10790236 11 86 2.5 2.0 2.2 3.4 97 chr2R 10790139 intron CG33144 - chr2R 10790188 intron CG33144 - chr2R 10790236 intron CG33144 - chr2R_11_10790001 chr2R_10790001 D20-c2 661 chr2R 10827331 10827360 chr2R 10827420 10827433 11 88 1.0 3.5 2.2 3.4 102 chr2R 10827331 exon CG12325 + chr2R 10827382 3` UTR CG12325 + chr2R 10827433 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 D20-c2 662 chr2R 10979662 10979679 chr2R 10980133 10980150 297 8 471 3.5 2.0 2.8 2.1 488 chr2R 10979662 intergenic not near genes chr2R 10979906 intergenic not near genes chr2R 10980150 intergenic not near genes chr2R_8_10975001 chr2R_10975001 D20-c2 663 chr2R 11009816 11009834 chr2R 11018991 11019009 roo 5 9175 3.5 2.5 3.0 1.2 9193 chr2R 11009816 intron luna - chr2R 11014412 intron luna - chr2R 11019009 intron luna - chr2R_5_11010001 chr2R_11010001 D20-c2 664 chr2R 11019875 11019910 chr2R 11024942 11024977 jockey 10 5067 6.0 2.5 4.2 1.9 5102 chr2R 11019875 intron luna - chr2R 11022426 intron luna - chr2R 11024977 intron luna - chr2R_10_11020001 chr2R_11020001 D20-c2 665 chr2R 11134113 11134140 chr2R 11134355 11134382 pogo 8 242 2.0 2.0 2.0 2.7 269 chr2R 11134113 intergenic not near genes chr2R 11134248 intergenic not near genes chr2R 11134382 intergenic not near genes chr2R_8_11130001 chr2R_11130001 D20-c2 666 chr2R 11179266 11179287 chr2R 11179353 11179374 7 87 0.0 6.0 3.0 1.8 108 chr2R 11179266 intron shn + chr2R 11179320 intron shn + chr2R 11179374 intron shn + chr2R_7_11175001 chr2R_11175001 D20-c2 667 chr2R 11207812 11207842 chr2R 11208005 11208035 BS 9 193 7.0 2.0 4.5 1.6 223 chr2R 11207812 intron shn + chr2R 11207924 intron shn + chr2R 11208035 intron shn + chr2R_9_11205001 chr2R_11205001 D20-c2 668 chr2R 11253232 11253267 chr2R 11253309 11253344 22 77 6.5 6.0 6.2 3.1 112 chr2R 11253232 intron Cpr47Ea - chr2R 11253288 intron Cpr47Ea - chr2R 11253344 intron Cpr47Ea - chr2R_22_11250001 chr2R_11250001 D20-c2 669 chr2R 11262196 11262219 chr2R 11262285 11262308 10 89 2.5 4.5 3.5 2.2 112 chr2R 11262196 intergenic Cpr47Ed - chr2R 11262252 intergenic Cpr47Ed - chr2R 11262308 intergenic not near genes chr2R_10_11260001 chr2R_11260001 D20-c2 670 chr2R 11297640 11297650 chr2R 11301962 11301972 flea 5 4321 5.5 0.5 3.0 1.2 4332 chr2R 11297640 intergenic CG42336 - chr2R 11299806 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_5_11295001 chr2R_11295001 D20-c2 671 chr2R 11344145 11344181 chr2R 11344242 11344274 6 96 0.5 2.0 1.2 2.7 129 chr2R 11344145 intergenic alphaTry - chr2R 11344210 intergenic alphaTry - chr2R 11344274 3` UTR alphaTry - chr2R_6_11340001 chr2R_11340001 D20-c2 672 chr2R 11415515 11415547 chr2R 11418665 11418697 opus 9 3150 8.5 4.5 6.5 1.2 3182 chr2R 11415515 intron Drip - chr2R 11417106 intron Drip - chr2R 11418697 intron Drip - chr2R_9_11415001 chr2R_11415001 D20-c2 673 chr2R 11472648 11472680 chr2R 11473846 11473878 pogo 13 1198 5.0 4.0 4.5 2.4 1230 chr2R 11472648 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473878 intergenic not near genes chr2R_13_11470001 chr2R_11470001 D20-c2 674 chr2R 11494323 11494339 chr2R 11494407 11494423 4 84 0.0 1.5 0.8 2.2 100 chr2R 11494323 intron inv + chr2R 11494373 intron inv + chr2R 11494423 intron inv + chr2R_4_11490001 chr2R_11490001 D20-c2 675 chr2R 11660365 11660399 chr2R 11660483 11660517 6 118 2.0 1.0 1.5 2.4 152 chr2R 11660365 intron Roc2 - chr2R 11660441 intron Roc2 - chr2R 11660517 intron Roc2 - chr2R_6_11660001 chr2R_11660001 D20-c2 676 chr2R 11787447 11787468 chr2R 11787534 11787555 4 87 5.5 4.5 5.0 0.7 108 chr2R 11787447 intron ths + chr2R 11787501 intron ths + chr2R 11787555 intron ths + chr2R_4_11785001 chr2R_11785001 D20-c2 677 chr2R 11830806 11830821 chr2R 11830892 11830907 5 86 3.0 6.5 4.8 0.9 101 chr2R 11830806 intron Sobp - chr2R 11830856 intron Sobp - chr2R 11830907 intron Sobp - chr2R_5_11830001 chr2R_11830001 D20-c2 678 chr2R 11861989 11862020 chr2R 11862075 11862106 8 86 1.0 1.5 1.2 3.6 117 chr2R 11861989 3` UTR CG34230 + chr2R 11862048 intergenic CG34230 +,TwdlBeta - chr2R 11862106 intergenic CG34230 +,TwdlBeta - chr2R_8_11860001 chr2R_11860001 D20-c2 679 chr2R 11951400 11951422 chr2R 11951612 11951634 11 211 0.0 3.5 1.8 3.9 234 chr2R 11951400 intron CG13188 + chr2R 11951517 intron CG13188 + chr2R 11951634 intron CG13188 + chr2R_11_11950001 chr2R_11950001 D20-c2 680 chr2R 12016813 12016844 chr2R 12016897 12016928 7 84 1.5 1.0 1.2 3.2 115 chr2R 12016813 intron otk - chr2R 12016870 intron otk - chr2R 12016928 intron otk - chr2R_7_12015001 chr2R_12015001 D20-c2 681 chr2R 8518778 8518802 chr2R 12066179 12066195 6 3547394 5.5 16.0 10.8 0.5 3547417 chr2R 8518778 intron mtt - chr2R 10292486 intron CAP + chr2R 12066195 intron CG8888 - chr2R_6_10290001 chr2R_10290001 D20-c2 682 chr2R 12139945 12139972 chr2R 12140034 12140061 5 89 2.0 5.5 3.8 1.0 116 chr2R 12139945 intron skpB - chr2R 12140003 5` UTR skpB - chr2R 12140061 5` UTR skpB - chr2R_5_12140001 chr2R_12140001 D20-c2 683 chr2R 12200968 12200994 chr2R 12201098 12201123 6 130 1.0 1.5 1.2 2.7 155 chr2R 12200968 intergenic RpS11 - chr2R 12201046 intergenic RpS11 - chr2R 12201123 intergenic RpS11 - chr2R_6_12200001 chr2R_12200001 D20-c2 684 chr2R 12236216 12236225 chr2R 12236324 12236333 4 108 3.0 0.0 1.5 1.6 117 chr2R 12236216 intergenic not near genes chr2R 12236274 intergenic not near genes chr2R 12236333 intergenic not near genes chr2R_4_12235001 chr2R_12235001 D20-c2 685 chr2R 12355787 12355805 chr2R 12355872 12355890 11 85 5.0 7.0 6.0 1.6 103 chr2R 12355787 intron CG30049 + chr2R 12355838 exon CG30049 + chr2R 12355890 exon CG30049 + chr2R_11_12355001 chr2R_12355001 D20-c2 686 chr2R 12481138 12481169 chr2R 12482943 12482974 roo 16 1803 5.0 5.5 5.2 2.6 1836 chr2R 12481138 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482974 intron Dh44-R2 + chr2R_16_12480001 chr2R_12480001 D20-c2 687 chr2R 12501696 12501722 chr2R 12503848 12503885 Rt1c 10 2161 3.0 2.0 2.5 2.9 2189 chr2R 12501696 intron fdl - chr2R 12502790 intron fdl - chr2R 12503885 intron fdl - chr2R_10_12500001 chr2R_12500001 D20-c2 688 chr2R 12540473 12540490 chr2R 12540557 12540574 10 84 9.5 4.5 7.0 1.2 101 chr2R 12540473 intron fra + chr2R 12540524 intron fra + chr2R 12540574 intron fra + chr2R_10_12540001 chr2R_12540001 D20-c2 689 chr2R 12552537 12552569 chr2R 12552695 12552727 8 158 1.0 3.0 2.0 2.7 190 chr2R 12552537 intron fra + chr2R 12552632 intron fra + chr2R 12552727 intron fra + chr2R_8_12550001 chr2R_12550001 D20-c2 690 chr2R 12565154 12565182 chr2R 12565236 12565264 5 82 2.0 1.5 1.8 1.8 110 chr2R 12565154 intergenic CG33775 - chr2R 12565209 intergenic CG33775 - chr2R 12565264 intergenic CG33775 - chr2R_5_12565001 chr2R_12565001 D20-c2 691 chr2R 12565567 12565597 chr2R 12565938 12565968 10 371 2.0 2.0 2.0 3.3 401 chr2R 12565567 intergenic not near genes chr2R 12565768 intergenic Cyp301a1 + chr2R 12565968 intergenic Cyp301a1 + chr2R_10_12565001 chr2R_12565001 D20-c2 692 chr2R 12602813 12602833 chr2R 12602898 12602918 6 85 0.0 1.5 0.8 3.3 105 chr2R 12602813 intron Amph + chr2R 12602866 intron Amph + chr2R 12602918 intron Amph + chr2R_6_12600001 chr2R_12600001 D20-c2 693 chr2R 12607748 12607754 chr2R 12607870 12607876 6 122 1.0 2.5 1.8 2.1 128 chr2R 12607748 intron Amph + chr2R 12607812 intron Amph + chr2R 12607876 intron Amph + chr2R_6_12605001 chr2R_12605001 D20-c2 694 chr2R 12700810 12700848 chr2R 12700905 12700943 17 95 4.5 5.5 5.0 2.8 133 chr2R 12700810 3` UTR wuc + chr2R 12700876 intergenic wuc + chr2R 12700943 intergenic wuc + chr2R_17_12700001 chr2R_12700001 D20-c2 695 chr2R 12738077 12738101 chr2R 12738738 12738767 5 663 0.0 0.0 0.0 5.0 690 chr2R 12738077 intron CG42663 + chr2R 12738422 intron CG42663 + chr2R 12738767 intron CG42663 + chr2R_5_12735001 chr2R_12735001 D20-c2 696 chr2R 12739132 12739155 chr2R 12739209 12739232 11 77 1.5 3.0 2.2 3.4 100 chr2R 12739132 intron CG42663 + chr2R 12739182 intron CG42663 + chr2R 12739232 intron CG42663 + chr2R_11_12735001 chr2R_12735001 D20-c2 697 chr2R 12789300 12789328 chr2R 12797655 12797673 roo 9 8359 2.0 4.0 3.0 2.2 8373 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793486 intron,intron sca +,CR45137 - chr2R 12797673 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 D20-c2 698 chr2R 12819461 12819478 chr2R 12824525 12824542 jockey 7 5064 1.0 5.5 3.2 1.7 5081 chr2R 12819461 intergenic not near genes chr2R 12822002 intergenic not near genes chr2R 12824542 intergenic not near genes chr2R_7_12820001 chr2R_12820001 D20-c2 699 chr2R 12897462 12897482 chr2R 12897554 12897574 8 92 1.5 2.5 2.0 2.7 112 chr2R 12897462 intron vg + chr2R 12897518 intron vg + chr2R 12897574 intron vg + chr2R_8_12895001 chr2R_12895001 D20-c2 700 chr2R 12988280 12988423 chr2R 12988393 12988528 4 107 0.0 0.0 0.0 4.0 248 chr2R 12988280 intergenic not near genes chr2R 12988404 intergenic not near genes chr2R 12988528 intergenic not near genes chr2R_4_12985001 chr2R_12985001 D20-c2 701 chr2R 13089083 13089109 chr2R 13089218 13089244 20 135 2.0 9.5 5.8 2.9 161 chr2R 13089083 intergenic not near genes chr2R 13089164 intergenic not near genes chr2R 13089244 intergenic not near genes chr2R_20_13085001 chr2R_13085001 D20-c2 702 chr2R 13136840 13136869 chr2R 13141639 13141668 Doc 15 4799 6.0 5.0 5.5 2.3 4828 chr2R 13136840 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_15_13135001 chr2R_13135001 D20-c2 703 chr2R 13220542 13220550 chr2R 13220642 13220650 6 100 0.0 3.5 1.8 2.1 108 chr2R 13220542 intron CG17059 + chr2R 13220596 intron CG17059 + chr2R 13220650 intron CG17059 + chr2R_6_13220001 chr2R_13220001 D20-c2 704 chr2R 13309659 13309672 chr2R 13309778 13309791 8 119 5.0 0.0 2.5 2.3 132 chr2R 13309659 intergenic not near genes chr2R 13309725 intergenic not near genes chr2R 13309791 intergenic not near genes chr2R_8_13305001 chr2R_13305001 D20-c2 705 chr2R 13351621 13351649 chr2R 13352758 13352786 13 1138 24.5 18.0 21.2 0.6 1165 chr2R 13351621 intron CR44206 - chr2R 13352204 intron CR44206 - chr2R 13352786 intron CR44206 - chr2R_13_13350001 chr2R_13350001 D20-c2 706 chr2R 13403922 13403930 chr2R 13404007 13404016 5 86 5.0 2.5 3.8 1.0 94 chr2R 13403922 intergenic not near genes chr2R 13403969 intergenic not near genes chr2R 13404016 intergenic not near genes chr2R_5_13400001 chr2R_13400001 D20-c2 707 chr2R 13431496 13431519 chr2R 13431576 13431599 4 80 2.5 3.0 2.8 1.1 103 chr2R 13431496 intron CG42321 - chr2R 13431548 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_4_13430001 chr2R_13430001 D20-c2 708 chr2R 13449678 13449684 chr2R 13449756 13449762 4 78 0.0 0.0 0.0 4.0 84 chr2R 13449678 intron cnn - chr2R 13449720 intron cnn - chr2R 13449762 intron cnn - chr2R_4_13445001 chr2R_13445001 D20-c2 709 chr2R 13480128 13480147 chr2R 13480208 13480227 5 80 3.5 3.5 3.5 1.1 99 chr2R 13480128 intron arr - chr2R 13480178 intron arr - chr2R 13480227 intron arr - chr2R_5_13480001 chr2R_13480001 D20-c2 710 chr2R 13547083 13547106 chr2R 13547279 13547302 10 196 5.0 1.0 3.0 2.5 219 chr2R 13547083 intron CG6145 - chr2R 13547192 intron CG6145 - chr2R 13547302 intron CG6145 - chr2R_10_13545001 chr2R_13545001 D20-c2 711 chr2R 13554741 13554773 chr2R 13554827 13554859 6 86 0.0 6.0 3.0 1.5 118 chr2R 13554741 intron Roe1 + chr2R 13554800 intron Roe1 + chr2R 13554859 intron Roe1 + chr2R_6_13550001 chr2R_13550001 D20-c2 712 chr2R 13566260 13566290 chr2R 13566341 13566371 10 81 1.0 0.0 0.5 6.7 111 chr2R 13566260 intergenic not near genes chr2R 13566316 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_10_13565001 chr2R_13565001 D20-c2 713 chr2R 13580500 13580528 chr2R 13580851 13580879 jockey 14 351 2.5 6.5 4.5 2.5 379 chr2R 13580500 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_14_13580001 chr2R_13580001 D20-c2 714 chr2R 13632300 13632314 chr2R 13632388 13632403 4 89 8.0 2.0 5.0 0.7 103 chr2R 13632300 intron fas + chr2R 13632352 intron fas + chr2R 13632403 intron fas + chr2R_4_13630001 chr2R_13630001 D20-c2 715 chr2R 13709851 13709854 chr2R 13709945 13709948 4 94 2.0 6.5 4.2 0.8 97 chr2R 13709851 intron fas + chr2R 13709900 intron fas + chr2R 13709948 intron fas + chr2R_4_13705001 chr2R_13705001 D20-c2 716 chr2R 13721203 13721229 chr2R 13721287 13721313 11 84 8.5 6.5 7.5 1.3 110 chr2R 13721203 intron fas + chr2R 13721258 intron fas + chr2R 13721313 intron fas + chr2R_11_13720001 chr2R_13720001 D20-c2 717 chr2R 13728133 13728158 chr2R 13735791 13735816 opus 6 7658 4.0 2.0 3.0 1.5 7683 chr2R 13728133 intron fas + chr2R 13731974 intron fas + chr2R 13735816 intron fas + chr2R_6_13730001 chr2R_13730001 D20-c2 718 chr2R 13801478 13801511 chr2R 13801558 13801591 17 79 3.5 2.5 3.0 4.2 113 chr2R 13801478 intron Cpr50Cb + chr2R 13801534 intron Cpr50Cb + chr2R 13801591 intron Cpr50Cb + chr2R_17_13800001 chr2R_13800001 D20-c2 719 chr2R 13868895 13868928 chr2R 13868975 13869008 9 80 3.0 0.5 1.8 3.2 113 chr2R 13868895 intron shot - chr2R 13868952 intron shot - chr2R 13869008 intron shot - chr2R_9_13865001 chr2R_13865001 D20-c2 720 chr2R 13905609 13905635 chr2R 13907592 13907618 Rt1a 9 1983 5.5 10.0 7.8 1.0 2009 chr2R 13905609 intron shot - chr2R 13906614 intron shot - chr2R 13907618 intron shot - chr2R_9_13905001 chr2R_13905001 D20-c2 721 chr2R 14018161 14018180 chr2R 14018246 14018265 6 85 3.5 3.5 3.5 1.3 104 chr2R 14018161 intron mam + chr2R 14018213 intron mam + chr2R 14018265 intron mam + chr2R_6_14015001 chr2R_14015001 D20-c2 722 chr2R 14093431 14093446 chr2R 14109583 14109598 4 16152 3.0 1.5 2.2 1.2 16167 chr2R 14093431 intron Prosap - chr2R 14101514 intron Prosap - chr2R 14109598 intron Prosap - chr2R_4_14100001 chr2R_14100001 D20-c2 723 chr2R 14277582 14277608 chr2R 14277665 14277691 4 83 1.0 3.5 2.2 1.2 109 chr2R 14277582 5` UTR Ih + chr2R 14277636 5` UTR Ih + chr2R 14277691 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 D20-c2 724 chr2R 14294831 14294860 chr2R 14294912 14294941 11 81 2.0 6.5 4.2 2.1 110 chr2R 14294831 intron Ih + chr2R 14294886 intron Ih + chr2R 14294941 intron Ih + chr2R_11_14290001 chr2R_14290001 D20-c2 725 chr2R 14357555 14357577 chr2R 14357646 14357667 5 91 1.0 0.5 0.8 2.8 112 chr2R 14357555 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357667 intergenic Arc1 -,CG8617 - chr2R_5_14355001 chr2R_14355001 D20-c2 726 chr2R 14467304 14467326 chr2R 14476463 14476485 roo 10 9159 1.0 2.5 1.8 3.6 9181 chr2R 14467304 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 D20-c2 727 chr2R 14524847 14524875 chr2R 14524945 14524973 8 98 5.0 0.0 2.5 2.3 126 chr2R 14524847 intergenic not near genes chr2R 14524910 intergenic not near genes chr2R 14524973 intergenic not near genes chr2R_8_14520001 chr2R_14520001 D20-c2 728 chr2R 14530747 14530769 chr2R 14530830 14530852 8 83 2.0 2.5 2.2 2.5 105 chr2R 14530747 intron ttv + chr2R 14530800 intron ttv + chr2R 14530852 intron ttv + chr2R_8_14530001 chr2R_14530001 D20-c2 729 chr2R 14707074 14707093 chr2R 14707155 14707174 4 81 1.5 5.0 3.2 1.0 100 chr2R 14707074 intron mspo - chr2R 14707124 intron mspo - chr2R 14707174 intron mspo - chr2R_4_14705001 chr2R_14705001 D20-c2 730 chr2R 14729956 14729987 chr2R 14730041 14730072 13 85 2.5 2.5 2.5 3.7 116 chr2R 14729956 intergenic not near genes chr2R 14730014 intergenic not near genes chr2R 14730072 intergenic not near genes chr2R_13_14730001 chr2R_14730001 D20-c2 731 chr2R 14760194 14760223 chr2R 14760278 14760308 5 85 0.5 0.5 0.5 3.3 114 chr2R 14760194 3` UTR Spred - chr2R 14760251 3` UTR Spred - chr2R 14760308 3` UTR Spred - chr2R_5_14760001 chr2R_14760001 D20-c2 732 chr2R 14780434 14780451 chr2R 14780571 14780588 8 137 2.5 5.0 3.8 1.7 154 chr2R 14780434 intron kn - chr2R 14780511 intron kn - chr2R 14780588 intron kn - chr2R_8_14780001 chr2R_14780001 D20-c2 733 chr2R 14799871 14799895 chr2R 14799948 14799972 6 77 1.0 3.0 2.0 2.0 101 chr2R 14799871 intron kn - chr2R 14799922 intron kn - chr2R 14799972 intron kn - chr2R_6_14795001 chr2R_14795001 D20-c2 734 chr2R 14881238 14881272 chr2R 14881382 14881416 15 144 1.5 3.5 2.5 4.3 178 chr2R 14881238 exon Cyp6a9 - chr2R 14881327 5` UTR Cyp6a9 - chr2R 14881416 intergenic Cyp6a9 - chr2R_15_14880001 chr2R_14880001 D20-c2 735 chr2R 14911702 14911727 chr2R 14911826 14911851 6 124 3.5 3.0 3.2 1.4 149 chr2R 14911702 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_6_14910001 chr2R_14910001 D20-c2 736 chr2R 14917846 14917881 chr2R 14917932 14917967 9 86 2.0 2.5 2.2 2.8 121 chr2R 14917846 intron CG10249 - chr2R 14917906 intron CG10249 - chr2R 14917967 intron CG10249 - chr2R_9_14915001 chr2R_14915001 D20-c2 737 chr2R 14922142 14922166 chr2R 14922219 14922243 4 77 3.0 1.0 2.0 1.3 101 chr2R 14922142 intron CG10249 - chr2R 14922192 intron CG10249 - chr2R 14922243 intron CG10249 - chr2R_4_14920001 chr2R_14920001 D20-c2 738 chr2R 14954745 14954782 chr2R 14954822 14954859 8 77 1.0 0.0 0.5 5.3 114 chr2R 14954745 intron aPKC - chr2R 14954802 intron aPKC - chr2R 14954859 intron aPKC - chr2R_8_14950001 chr2R_14950001 D20-c2 739 chr2R 15004726 15004742 chr2R 15005056 15005072 jockey 4 330 5.0 4.5 4.8 0.7 346 chr2R 15004726 intergenic not near genes chr2R 15004899 intergenic not near genes chr2R 15005072 intergenic not near genes chr2R_4_15000001 chr2R_15000001 D20-c2 740 chr2R 15015453 15015488 chr2R 15022878 15022913 mdg1 10 7425 4.0 1.5 2.8 2.6 7460 chr2R 15015453 intron hbs + chr2R 15019183 intron hbs + chr2R 15022913 intron hbs + chr2R_10_15015001 chr2R_15015001 D20-c2 741 chr2R 15051081 15051110 chr2R 15051164 15051193 17 83 1.0 2.5 1.8 6.1 112 chr2R 15051081 intergenic not near genes chr2R 15051137 intergenic not near genes chr2R 15051193 intergenic not near genes chr2R_17_15050001 chr2R_15050001 D20-c2 742 chr2R 15110666 15110692 chr2R 15110748 15110774 9 82 2.0 3.5 2.8 2.4 108 chr2R 15110666 intergenic not near genes chr2R 15110720 intergenic not near genes chr2R 15110774 intergenic not near genes chr2R_9_15110001 chr2R_15110001 D20-c2 743 chr2R 15119317 15119350 chr2R 15127799 15127832 Tirant 6 8482 4.5 4.0 4.2 1.2 8515 chr2R 15119317 intron chn + chr2R 15123574 intron chn + chr2R 15127832 intron chn + chr2R_6_15120001 chr2R_15120001 D20-c2 744 chr2R 15230386 15230393 chr2R 15231096 15231103 7 710 11.5 1.5 6.5 0.9 717 chr2R 15230386 intron,5` UTR Fs -,CR44370 + chr2R 15230744 intron,5` UTR Fs -,CR44370 + chr2R 15231103 intron,5` UTR Fs -,CR44370 + chr2R_7_15230001 chr2R_15230001 D20-c2 745 chr2R 15296159 15296172 chr2R 15296243 15296256 10 84 2.0 2.5 2.2 3.1 97 chr2R 15296159 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296256 intron Trpm - chr2R_10_15295001 chr2R_15295001 D20-c2 746 chr2R 15330207 15330233 chr2R 15330342 15330368 4 135 1.5 3.5 2.5 1.1 161 chr2R 15330207 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330368 intergenic CR44371 - chr2R_4_15330001 chr2R_15330001 D20-c2 747 chr2R 15355019 15355054 chr2R 15355106 15355141 24 87 4.5 4.0 4.2 4.6 122 chr2R 15355019 intron unc-5 + chr2R 15355080 intron unc-5 + chr2R 15355141 intron unc-5 + chr2R_24_15355001 chr2R_15355001 D20-c2 748 chr2R 15362657 15362671 chr2R 15362740 15362754 5 83 6.0 5.5 5.8 0.7 97 chr2R 15362657 intron unc-5 + chr2R 15362706 intron unc-5 + chr2R 15362754 intron unc-5 + chr2R_5_15360001 chr2R_15360001 D20-c2 749 chr2R 15404119 15404123 chr2R 15404217 15404222 4 99 3.5 4.5 4.0 0.8 103 chr2R 15404119 intron CG43729 + chr2R 15404170 intron CG43729 + chr2R 15404222 intron CG43729 + chr2R_4_15400001 chr2R_15400001 D20-c2 750 chr2R 15833520 15833549 chr2R 15833608 15833637 13 88 4.5 4.0 4.2 2.5 117 chr2R 15833520 intron,intron tun +,Poxn - chr2R 15833578 intron,intron tun +,Poxn - chr2R 15833637 intron,intron tun +,Poxn - chr2R_13_15830001 chr2R_15830001 D20-c2 751 chr2R 15891829 15891833 chr2R 15891906 15891910 4 77 0.5 2.5 1.5 1.6 81 chr2R 15891829 intron sli - chr2R 15891870 intron sli - chr2R 15891910 intron sli - chr2R_4_15890001 chr2R_15890001 D20-c2 752 chr2R 15930381 15930387 chr2R 15930459 15930465 4 78 12.5 0.0 6.2 0.6 84 chr2R 15930381 intron bdg - chr2R 15930423 intron bdg - chr2R 15930465 intron bdg - chr2R_4_15930001 chr2R_15930001 D20-c2 753 chr2R 16054949 16054959 chr2R 16055033 16055043 6 84 11.0 11.0 11.0 0.5 94 chr2R 16054949 intron CG8405 + chr2R 16054996 intron CG8405 + chr2R 16055043 intron CG8405 + chr2R_6_16050001 chr2R_16050001 D20-c2 754 chr2R 16119885 16119921 chr2R 16120010 16120046 13 125 4.5 3.5 4.0 2.6 161 chr2R 16119885 5` UTR Jhe + chr2R 16119966 intron Jhe + chr2R 16120046 intron Jhe + chr2R_13_16115001 chr2R_16115001 D20-c2 755 chr2R 16220710 16220739 chr2R 16220791 16220820 13 81 0.5 5.0 2.8 3.4 110 chr2R 16220710 intron mrj - chr2R 16220765 intron mrj - chr2R 16220820 intron mrj - chr2R_13_16220001 chr2R_16220001 D20-c2 756 chr2R 16279493 16279520 chr2R 16279633 16279660 4 140 2.0 0.5 1.2 1.8 167 chr2R 16279493 intergenic not near genes chr2R 16279576 intergenic CG15704 + chr2R 16279660 intergenic CG15704 + chr2R_4_16275001 chr2R_16275001 D20-c2 757 chr2R 16449317 16449337 chr2R 16449565 16449585 8 247 4.0 6.5 5.2 1.3 268 chr2R 16449317 intergenic not near genes chr2R 16449451 intergenic not near genes chr2R 16449585 intergenic not near genes chr2R_8_16445001 chr2R_16445001 D20-c2 758 chr2R 16482891 16482903 chr2R 16483136 16483149 5 246 1.5 1.5 1.5 2.0 258 chr2R 16482891 intergenic not near genes chr2R 16483020 intergenic not near genes chr2R 16483149 intergenic not near genes chr2R_5_16480001 chr2R_16480001 D20-c2 759 chr2R 16518047 16518064 chr2R 16518124 16518141 8 77 3.5 0.5 2.0 2.7 94 chr2R 16518047 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518141 intron Sema-2a + chr2R_8_16515001 chr2R_16515001 D20-c2 760 chr2R 16539648 16539668 chr2R 16544858 16544878 copia 4 5210 5.5 3.0 4.2 0.8 5230 chr2R 16539648 intergenic not near genes chr2R 16542263 intergenic not near genes chr2R 16544878 intergenic not near genes chr2R_4_16540001 chr2R_16540001 D20-c2 761 chr2R 16599288 16599323 chr2R 16599369 16599404 21 81 4.0 4.5 4.2 4.0 116 chr2R 16599288 intron,exon CG8303 -,CG5089 + chr2R 16599346 intron,exon CG8303 -,CG5089 + chr2R 16599404 intron,exon CG8303 -,CG5089 + chr2R_21_16595001 chr2R_16595001 D20-c2 762 chr2R 16882727 16882734 chr2R 16882852 16882859 4 124 4.5 3.5 4.0 0.8 132 chr2R 16882727 intron,intron CG8910 -,CG6472 + chr2R 16882793 intron,intron CG8910 -,CG6472 + chr2R 16882859 intron,intron CG8910 -,CG6472 + chr2R_4_16880001 chr2R_16880001 D20-c2 763 chr2R 17132853 17132866 chr2R 17132954 17132967 4 101 1.5 2.0 1.8 1.4 114 chr2R 17132853 intergenic not near genes chr2R 17132910 intergenic not near genes chr2R 17132967 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 D20-c2 764 chr2R 17147238 17147276 chr2R 17152270 17152307 jockey 10 5032 2.5 4.5 3.5 2.2 5069 chr2R 17147238 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152307 intergenic not near genes chr2R_10_17145001 chr2R_17145001 D20-c2 765 chr2R 17161172 17161196 chr2R 17161258 17161282 6 86 4.5 2.0 3.2 1.4 110 chr2R 17161172 intergenic CG30457 - chr2R 17161227 intergenic CG30457 - chr2R 17161282 intergenic CG30457 - chr2R_6_17160001 chr2R_17160001 D20-c2 766 chr2R 17236510 17236538 chr2R 17241715 17241743 copia 8 5205 4.0 3.5 3.8 1.7 5233 chr2R 17236510 intron mbl + chr2R 17239126 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 D20-c2 767 chr2R 17485919 17485931 chr2R 17490690 17490702 F-element 5 4771 4.5 1.0 2.8 1.3 4783 chr2R 17485919 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488310 intron NT5E-2 + chr2R 17490702 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 D20-c2 768 chr2R 17610861 17610887 chr2R 17611083 17611108 4 222 1.0 2.5 1.8 1.4 247 chr2R 17610861 intron CG10936 - chr2R 17610984 intron CG10936 - chr2R 17611108 intron CG10936 - chr2R_4_17610001 chr2R_17610001 D20-c2 769 chr2R 17918167 17918192 chr2R 17918245 17918270 9 78 3.5 1.5 2.5 2.6 103 chr2R 17918167 intron Elk + chr2R 17918218 intron Elk + chr2R 17918270 intron Elk + chr2R_9_17915001 chr2R_17915001 D20-c2 770 chr2R 17966148 17966169 chr2R 17966230 17966234 10 80 3.5 4.0 3.8 2.1 86 chr2R 17966148 intergenic not near genes chr2R 17966191 intergenic not near genes chr2R 17966234 intergenic not near genes chr2R_10_17965001 chr2R_17965001 D20-c2 771 chr2R 17971123 17971129 chr2R 17971202 17971209 6 80 5.5 7.5 6.5 0.8 86 chr2R 17971123 intergenic not near genes chr2R 17971166 intergenic not near genes chr2R 17971209 intergenic not near genes chr2R_6_17970001 chr2R_17970001 D20-c2 772 chr2R 17974532 17974558 chr2R 17974661 17974687 16 128 6.0 6.0 6.0 2.3 155 chr2R 17974532 intergenic not near genes chr2R 17974610 intergenic not near genes chr2R 17974687 intergenic dpr13 - chr2R_16_17970001 chr2R_17970001 D20-c2 773 chr2R 17982923 17982951 chr2R 17983009 17983037 9 86 0.5 3.0 1.8 3.2 114 chr2R 17982923 intron dpr13 - chr2R 17982980 intron dpr13 - chr2R 17983037 intron dpr13 - chr2R_9_17980001 chr2R_17980001 D20-c2 774 chr2R 17995351 17995370 chr2R 17995430 17995449 5 79 1.5 2.0 1.8 1.8 98 chr2R 17995351 intron dpr13 - chr2R 17995400 intron dpr13 - chr2R 17995449 intron dpr13 - chr2R_5_17995001 chr2R_17995001 D20-c2 775 chr2R 18021486 18021551 chr2R 18021972 18022037 9 480 10.0 4.5 7.2 1.1 551 chr2R 18021486 exon CG10910 + chr2R 18021762 exon CG10910 + chr2R 18022037 exon CG10910 + chr2R_9_18020001 chr2R_18020001 D20-c2 776 chr2R 18045678 18045697 chr2R 18046031 18046050 jockey 4 353 1.5 2.5 2.0 1.3 372 chr2R 18045678 intergenic not near genes chr2R 18045864 intergenic not near genes chr2R 18046050 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 D20-c2 777 chr2R 18111685 18111716 chr2R 18115554 18115585 F-element 4 3869 2.5 2.0 2.2 1.2 3900 chr2R 18111685 intergenic not near genes chr2R 18113635 intergenic not near genes chr2R 18115585 intergenic not near genes chr2R_4_18110001 chr2R_18110001 D20-c2 778 chr2R 18124337 18124372 chr2R 18124415 18124450 14 78 3.0 1.5 2.2 4.4 113 chr2R 18124337 intron stau - chr2R 18124394 intron stau - chr2R 18124450 intron stau - chr2R_14_18120001 chr2R_18120001 D20-c2 779 chr2R 18142917 18142924 chr2R 18143157 18143164 4 240 15.0 10.0 12.5 0.3 247 chr2R 18142917 intron,5` UTR pAbp +,snoRNA:Psi18S-1347a + chr2R 18143040 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R 18143164 intron pAbp + chr2R_4_18140001 chr2R_18140001 D20-c2 780 chr2R 18207314 18207352 chr2R 18207403 18207441 13 89 2.0 4.5 3.2 3.1 127 chr2R 18207314 intergenic CG30114 + chr2R 18207378 intergenic CG30114 + chr2R 18207441 intergenic CG30114 + chr2R_13_18205001 chr2R_18205001 D20-c2 781 chr2R 18289445 18289460 chr2R 18289548 18289563 8 103 2.5 12.0 7.2 1.0 118 chr2R 18289445 intron,intron sbb -,CG14502 + chr2R 18289504 intron,intron sbb -,CG14502 + chr2R 18289563 exon,intron sbb -,CG14502 + chr2R_8_18285001 chr2R_18285001 D20-c2 782 chr2R 18358395 18358421 chr2R 18372608 18372634 roo 11 14213 2.0 4.5 3.2 2.6 14239 chr2R 18358395 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_11_18365001 chr2R_18365001 D20-c2 783 chr2R 18398157 18398192 chr2R 18398253 18398287 9 95 4.0 3.5 3.8 1.9 130 chr2R 18398157 intron GstE10 - chr2R 18398222 intron GstE10 - chr2R 18398287 intron GstE10 - chr2R_9_18395001 chr2R_18395001 D20-c2 784 chr2R 18477744 18477762 chr2R 18477828 18477846 14 84 1.0 6.0 3.5 3.1 102 chr2R 18477744 intron CG30116 - chr2R 18477795 intron CG30116 - chr2R 18477846 intron CG30116 - chr2R_14_18475001 chr2R_18475001 D20-c2 785 chr2R 18527777 18527812 chr2R 18527899 18527934 9 122 4.5 2.0 3.2 2.1 157 chr2R 18527777 exon CG10924 + chr2R 18527856 intron CG10924 + chr2R 18527934 intron CG10924 + chr2R_9_18525001 chr2R_18525001 D20-c2 786 chr2R 18528196 18528221 chr2R 18528282 18528307 7 86 3.5 5.0 4.2 1.3 111 chr2R 18528196 intron CG10924 + chr2R 18528252 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_7_18525001 chr2R_18525001 D20-c2 787 chr2R 18575795 18575829 chr2R 18581984 18582018 3S18 13 6185 5.5 6.5 6.0 1.9 6223 chr2R 18575795 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_13_18575001 chr2R_18575001 D20-c2 788 chr2R 18590866 18590899 chr2R 18600019 18600052 roo 16 9153 5.0 5.0 5.0 2.7 9186 chr2R 18590866 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_16_18595001 chr2R_18595001 D20-c2 789 chr2R 18646411 18646434 chr2R 18646557 18646580 10 146 4.5 2.5 3.5 2.2 169 chr2R 18646411 intron SP2637 - chr2R 18646496 intron SP2637 - chr2R 18646580 intron SP2637 - chr2R_10_18645001 chr2R_18645001 D20-c2 790 chr2R 18713240 18713273 chr2R 18713318 18713351 8 78 3.5 1.5 2.5 2.3 111 chr2R 18713240 intergenic not near genes chr2R 18713296 intergenic not near genes chr2R 18713351 intergenic not near genes chr2R_8_18710001 chr2R_18710001 D20-c2 791 chr2R 18738215 18738240 chr2R 18738292 18738317 9 77 2.5 0.5 1.5 3.6 102 chr2R 18738215 intron Hs3st-A + chr2R 18738266 intron Hs3st-A + chr2R 18738317 intron Hs3st-A + chr2R_9_18735001 chr2R_18735001 D20-c2 792 chr2R 18835890 18835910 chr2R 18835973 18835993 4 83 2.0 0.0 1.0 2.0 103 chr2R 18835890 intron CG15083 + chr2R 18835942 intron CG15083 + chr2R 18835993 intron CG15083 + chr2R_4_18835001 chr2R_18835001 D20-c2 793 chr2R 18862307 18862317 chr2R 18862395 18862405 5 88 0.5 0.0 0.2 4.2 98 chr2R 18862307 intergenic Jheh3 - chr2R 18862356 intergenic Jheh3 - chr2R 18862405 intergenic Jheh3 -,CG43069 + chr2R_5_18860001 chr2R_18860001 D20-c2 794 chr2R 18904445 18904466 chr2R 18904598 18904635 10 165 4.0 4.0 4.0 2.0 190 chr2R 18904445 intron sano + chr2R 18904540 intron sano + chr2R 18904635 intron sano + chr2R_10_18900001 chr2R_18900001 D20-c2 795 chr2R 18964916 18964943 chr2R 18964993 18965020 6 77 3.5 4.0 3.8 1.2 104 chr2R 18964916 intergenic not near genes chr2R 18964968 intergenic not near genes chr2R 18965020 intergenic not near genes chr2R_6_18960001 chr2R_18960001 D20-c2 796 chr2R 18989016 18989035 chr2R 18989095 18989114 6 79 2.5 1.5 2.0 2.0 98 chr2R 18989016 intron tn + chr2R 18989065 intron tn + chr2R 18989114 intron tn + chr2R_6_18985001 chr2R_18985001 D20-c2 797 chr2R 19067722 19067744 chr2R 19067799 19067821 6 77 3.0 0.5 1.8 2.1 99 chr2R 19067722 intron 5-HT1A + chr2R 19067772 intron 5-HT1A + chr2R 19067821 intron 5-HT1A + chr2R_6_19065001 chr2R_19065001 D20-c2 798 chr2R 19124405 19124430 chr2R 19124488 19124513 14 83 5.0 6.5 5.8 2.1 108 chr2R 19124405 exon CG15117 - chr2R 19124459 intron CG15117 - chr2R 19124513 intron CG15117 - chr2R_14_19120001 chr2R_19120001 D20-c2 799 chr2R 19183348 19183372 chr2R 19183425 19183449 5 77 2.0 2.5 2.2 1.6 101 chr2R 19183348 intron hppy + chr2R 19183398 intron hppy + chr2R 19183449 intron hppy + chr2R_5_19180001 chr2R_19180001 D20-c2 800 chr2R 19300960 19300995 chr2R 19301044 19301079 18 84 2.5 2.5 2.5 5.1 119 chr2R 19300960 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301079 intron Tab2 + chr2R_18_19300001 chr2R_19300001 D20-c2 801 chr2R 19385295 19385311 chr2R 19385586 19385602 4 290 0.0 2.0 1.0 2.0 307 chr2R 19385295 intergenic CG10073 + chr2R 19385448 intergenic CG10081 +,CG10073 + chr2R 19385602 intergenic CG10081 + chr2R_4_19385001 chr2R_19385001 D20-c2 802 chr2R 19388499 19388529 chr2R 19388593 19388623 15 94 3.0 4.5 3.8 3.1 124 chr2R 19388499 intron CG10081 + chr2R 19388561 exon CG10081 + chr2R 19388623 exon CG10081 + chr2R_15_19385001 chr2R_19385001 D20-c2 803 chr2R 19411819 19411838 chr2R 19411978 19411997 4 158 2.5 1.0 1.8 1.4 178 chr2R 19411819 intron hts - chr2R 19411908 intron hts - chr2R 19411997 intron hts - chr2R_4_19410001 chr2R_19410001 D20-c2 804 chr2R 19498734 19498763 chr2R 19498816 19498845 16 82 3.0 6.0 4.5 2.9 111 chr2R 19498734 intron CG15120 + chr2R 19498790 intron CG15120 + chr2R 19498845 intron CG15120 + chr2R_16_19495001 chr2R_19495001 D20-c2 805 chr2R 19539143 19539176 chr2R 19539235 19539268 14 90 1.0 3.5 2.2 4.4 125 chr2R 19539143 intron sm - chr2R 19539206 intron sm - chr2R 19539268 intron sm - chr2R_14_19535001 chr2R_19535001 D20-c2 806 chr2R 19544820 19544857 chr2R 19544901 19544938 12 81 3.5 4.5 4.0 2.4 118 chr2R 19544820 intron sm - chr2R 19544879 intron sm - chr2R 19544938 intron sm - chr2R_12_19540001 chr2R_19540001 D20-c2 807 chr2R 19774008 19774042 chr2R 19774122 19774156 5 114 3.5 2.0 2.8 1.3 148 chr2R 19774008 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774156 intergenic not near genes chr2R_5_19770001 chr2R_19770001 D20-c2 808 chr2R 19776594 19776630 chr2R 19779918 19779954 jockey 11 3324 3.5 3.5 3.5 2.4 3360 chr2R 19776594 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779954 intergenic not near genes chr2R_11_19775001 chr2R_19775001 D20-c2 809 chr2R 19794866 19794903 chr2R 19794970 19795009 18 104 2.0 5.5 3.8 3.8 143 chr2R 19794866 intergenic not near genes chr2R 19794938 intergenic not near genes chr2R 19795009 intergenic not near genes chr2R_18_19790001 chr2R_19790001 D20-c2 810 chr2R 19807680 19807700 chr2R 19807763 19807782 10 83 3.0 4.5 3.8 2.1 102 chr2R 19807680 intergenic not near genes chr2R 19807731 intergenic not near genes chr2R 19807782 intergenic not near genes chr2R_10_19805001 chr2R_19805001 D20-c2 811 chr2R 19914846 19914872 chr2R 19922259 19922285 mdg1 6 7413 2.5 2.5 2.5 1.7 7439 chr2R 19914846 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922285 intergenic not near genes chr2R_6_19915001 chr2R_19915001 D20-c2 812 chr2R 19922614 19922629 chr2R 19922683 19922707 9 75 5.0 2.5 3.8 1.9 93 chr2R 19922614 intergenic not near genes chr2R 19922660 intergenic not near genes chr2R 19922707 intergenic not near genes chr2R_9_19920001 chr2R_19920001 D20-c2 813 chr2R 19940574 19940602 chr2R 19940985 19941013 12 411 0.5 3.5 2.0 4.0 439 chr2R 19940574 intergenic CR43421 - chr2R 19940794 intergenic CR43421 - chr2R 19941013 intergenic CR43421 - chr2R_12_19940001 chr2R_19940001 D20-c2 814 chr2R 19957432 19957444 chr2R 19962631 19962647 copia 7 5201 7.5 4.0 5.8 1.0 5215 chr2R 19957432 intergenic CG44623 + chr2R 19960040 intergenic not near genes chr2R 19962647 intergenic not near genes chr2R_7_19960001 chr2R_19960001 D20-c2 815 chr2R 20020407 20020424 chr2R 20020611 20020637 8 211 3.5 6.0 4.8 1.4 230 chr2R 20020407 intergenic not near genes chr2R 20020522 intergenic not near genes chr2R 20020637 intergenic not near genes chr2R_8_20020001 chr2R_20020001 D20-c2 816 chr2R 20069243 20069273 chr2R 20071874 20071904 opus 8 2631 2.5 5.5 4.0 1.6 2661 chr2R 20069243 intergenic not near genes chr2R 20070574 intergenic not near genes chr2R 20071904 intergenic not near genes chr2R_8_20070001 chr2R_20070001 D20-c2 817 chr2R 20174641 20174677 chr2R 20174717 20174754 12 77 4.0 5.5 4.8 2.1 113 chr2R 20174641 intergenic not near genes chr2R 20174698 intergenic not near genes chr2R 20174754 intergenic not near genes chr2R_12_20170001 chr2R_20170001 D20-c2 818 chr2R 20338761 20338777 chr2R 20338842 20338858 4 81 2.5 0.0 1.2 1.8 97 chr2R 20338761 intergenic not near genes chr2R 20338810 intergenic not near genes chr2R 20338858 intergenic not near genes chr2R_4_20335001 chr2R_20335001 D20-c2 819 chr2R 20395172 20395194 chr2R 20395249 20395273 7 79 2.0 1.5 1.8 2.5 101 chr2R 20395172 intergenic not near genes chr2R 20395222 intergenic not near genes chr2R 20395273 intergenic not near genes chr2R_7_20395001 chr2R_20395001 D20-c2 820 chr2R 20739439 20739473 chr2R 20744208 20744242 F-element 15 4769 2.0 4.5 3.2 3.6 4803 chr2R 20739439 intron dpr + chr2R 20741840 intron dpr + chr2R 20744242 intron dpr + chr2R_15_20740001 chr2R_20740001 D20-c2 821 chr2R 20783313 20783333 chr2R 20788086 20788106 F-element 5 4773 0.5 2.0 1.2 2.3 4793 chr2R 20783313 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788106 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 D20-c2 822 chr2R 20962905 20962935 chr2R 20963004 20963034 10 99 1.0 1.5 1.2 4.5 129 chr2R 20962905 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963034 intergenic not near genes chr2R_10_20960001 chr2R_20960001 D20-c2 823 chr2R 20967028 20967055 chr2R 20967106 20967133 4 78 1.0 0.0 0.5 2.7 105 chr2R 20967028 intergenic not near genes chr2R 20967080 intergenic not near genes chr2R 20967133 intergenic not near genes chr2R_4_20965001 chr2R_20965001 D20-c2 824 chr2R 20970386 20970418 chr2R 20970502 20970512 12 114 2.5 2.0 2.2 3.8 126 chr2R 20970386 intergenic not near genes chr2R 20970449 intergenic not near genes chr2R 20970512 intergenic not near genes chr2R_12_20970001 chr2R_20970001 D20-c2 825 chr2R 21040862 21040887 chr2R 21040939 21040964 8 77 4.0 1.5 2.8 2.1 102 chr2R 21040862 intergenic not near genes chr2R 21040913 intergenic not near genes chr2R 21040964 intergenic not near genes chr2R_8_21040001 chr2R_21040001 D20-c2 826 chr2R 21103538 21103544 chr2R 21103619 21103625 4 81 1.0 0.0 0.5 2.7 87 chr2R 21103538 intron ktub + chr2R 21103582 intron ktub + chr2R 21103625 intron ktub + chr2R_4_21100001 chr2R_21100001 D20-c2 827 chr2R 21141118 21141146 chr2R 21141215 21141243 7 97 0.0 1.5 0.8 3.9 125 chr2R 21141118 intron Magi - chr2R 21141180 intron Magi - chr2R 21141243 intron Magi - chr2R_7_21140001 chr2R_21140001 D20-c2 828 chr2R 21151115 21151145 chr2R 21153749 21153779 opus 8 2634 3.5 7.0 5.2 1.3 2664 chr2R 21151115 intron CG30389 - chr2R 21152447 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_8_21150001 chr2R_21150001 D20-c2 829 chr2R 21188217 21188227 chr2R 21188299 21188309 4 82 7.5 1.0 4.2 0.8 92 chr2R 21188217 exon tud + chr2R 21188263 intron tud + chr2R 21188309 intron tud + chr2R_4_21185001 chr2R_21185001 D20-c2 830 chr2R 21217322 21217331 chr2R 21217410 21217419 4 88 0.0 0.0 0.0 4.0 97 chr2R 21217322 exon CG15661 - chr2R 21217370 5` UTR CG15661 - chr2R 21217419 5` UTR CG15661 - chr2R_4_21215001 chr2R_21215001 D20-c2 831 chr2R 21232645 21232678 chr2R 21232816 21232850 6 171 3.0 0.0 1.5 2.4 205 chr2R 21232645 intron ASPP - chr2R 21232748 intron ASPP - chr2R 21232850 intron ASPP - chr2R_6_21230001 chr2R_21230001 D20-c2 832 chr2R 21247516 21247523 chr2R 21247999 21248006 4 483 4.0 5.0 4.5 0.7 490 chr2R 21247516 intron ASPP - chr2R 21247761 intron ASPP - chr2R 21248006 intron ASPP - chr2R_4_21245001 chr2R_21245001 D20-c2 833 chr2R 21251820 21251851 chr2R 21252048 21252079 8 227 2.5 3.5 3.0 2.0 259 chr2R 21251820 intergenic not near genes chr2R 21251950 intergenic not near genes chr2R 21252079 intergenic not near genes chr2R_8_21250001 chr2R_21250001 D20-c2 834 chr2R 21322937 21322973 chr2R 21323022 21323058 22 85 4.5 5.0 4.8 3.8 121 chr2R 21322937 5` UTR CG30394 - chr2R 21322998 5` UTR CG30394 - chr2R 21323058 5` UTR CG30394 - chr2R_22_21320001 chr2R_21320001 D20-c2 835 chr2R 21421338 21421348 chr2R 21421418 21421428 4 80 3.5 3.0 3.2 1.0 90 chr2R 21421338 intron Sdc - chr2R 21421383 intron Sdc - chr2R 21421428 intron Sdc - chr2R_4_21420001 chr2R_21420001 D20-c2 836 chr2R 21470923 21470929 chr2R 21471002 21471008 5 79 5.0 0.0 2.5 1.4 85 chr2R 21470923 intron Sdc - chr2R 21470966 intron Sdc - chr2R 21471008 intron Sdc - chr2R_5_21470001 chr2R_21470001 D20-c2 837 chr2R 21522071 21522084 chr2R 21522206 21522219 4 135 0.5 3.0 1.8 1.4 148 chr2R 21522071 intergenic CG30289 -,Egfr + chr2R 21522145 intergenic Egfr +,CG30289 - chr2R 21522219 intergenic Egfr +,CG30289 - chr2R_4_21520001 chr2R_21520001 D20-c2 838 chr2R 21546785 21546806 chr2R 21546867 21546888 12 80 3.0 5.0 4.0 2.4 103 chr2R 21546785 intron Egfr + chr2R 21546836 intron Egfr + chr2R 21546888 intron Egfr + chr2R_12_21545001 chr2R_21545001 D20-c2 839 chr2R 21593576 21593609 chr2R 21594285 21594320 18 710 5.5 7.5 6.5 2.4 744 chr2R 21593576 intergenic not near genes chr2R 21593948 intergenic not near genes chr2R 21594320 intergenic not near genes chr2R_18_21590001 chr2R_21590001 D20-c2 840 chr2R 21753090 21753115 chr2R 21753576 21753601 roo 7 486 7.0 5.5 6.2 1.0 511 chr2R 21753090 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_7_21750001 chr2R_21750001 D20-c2 841 chr2R 21809527 21809558 chr2R 21817768 21817799 roo 8 8241 3.0 3.5 3.2 1.9 8272 chr2R 21809527 intergenic not near genes chr2R 21813663 intergenic not near genes chr2R 21817799 intergenic not near genes chr2R_8_21810001 chr2R_21810001 D20-c2 842 chr2R 21886136 21886155 chr2R 21886216 21886229 4 78 4.0 0.0 2.0 1.3 93 chr2R 21886136 intron Fili + chr2R 21886182 intron Fili + chr2R 21886229 intron Fili + chr2R_4_21885001 chr2R_21885001 D20-c2 843 chr2R 21906273 21906303 chr2R 21906375 21906405 12 102 1.0 2.0 1.5 4.8 132 chr2R 21906273 intron Fili + chr2R 21906339 intron Fili + chr2R 21906405 intron Fili + chr2R_12_21905001 chr2R_21905001 D20-c2 844 chr2R 21922598 21922617 chr2R 21922676 21922695 4 78 2.0 2.5 2.2 1.2 97 chr2R 21922598 intron Fili + chr2R 21922646 intron Fili + chr2R 21922695 intron Fili + chr2R_4_21920001 chr2R_21920001 D20-c2 845 chr2R 21932247 21932282 chr2R 21932326 21932361 10 79 1.0 1.5 1.2 4.5 114 chr2R 21932247 intron Fili + chr2R 21932304 intron Fili + chr2R 21932361 intron Fili + chr2R_10_21930001 chr2R_21930001 D20-c2 846 chr2R 21937362 21937370 chr2R 21937508 21937515 4 145 21.5 30.0 25.8 0.1 153 chr2R 21937362 intron Fili + chr2R 21937438 intron Fili + chr2R 21937515 intron Fili + chr2R_4_21935001 chr2R_21935001 D20-c2 847 chr2R 21985545 21985562 chr2R 21985627 21985644 6 82 2.0 4.5 3.2 1.4 99 chr2R 21985545 intergenic CG30401 - chr2R 21985594 intergenic CG30401 - chr2R 21985644 3` UTR CG30401 - chr2R_6_21985001 chr2R_21985001 D20-c2 848 chr2R 22003089 22003120 chr2R 22003176 22003207 10 87 2.0 4.0 3.0 2.5 118 chr2R 22003089 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003207 intron CG34370 - chr2R_10_22000001 chr2R_22000001 D20-c2 849 chr2R 22004297 22004316 chr2R 22004392 22004411 5 95 3.0 0.0 1.5 2.0 114 chr2R 22004297 intron CG34370 - chr2R 22004354 intron CG34370 - chr2R 22004411 intron CG34370 - chr2R_5_22000001 chr2R_22000001 D20-c2 850 chr2R 22033828 22033857 chr2R 22033915 22033944 8 87 1.5 4.0 2.8 2.1 116 chr2R 22033828 intron CG34370 - chr2R 22033886 intron CG34370 - chr2R 22033944 intron CG34370 - chr2R_8_22030001 chr2R_22030001 D20-c2 851 chr2R 22040155 22040183 chr2R 22040237 22040246 6 79 0.0 3.0 1.5 2.4 91 chr2R 22040155 intergenic not near genes chr2R 22040200 intergenic not near genes chr2R 22040246 intergenic not near genes chr2R_6_22040001 chr2R_22040001 D20-c2 852 chr2R 22047991 22048022 chr2R 22048120 22048151 11 129 5.0 3.0 4.0 2.2 160 chr2R 22047991 intergenic not near genes chr2R 22048071 intergenic not near genes chr2R 22048151 intergenic not near genes chr2R_11_22045001 chr2R_22045001 D20-c2 853 chr2R 22182913 22182928 chr2R 22182998 22183013 4 85 2.0 2.0 2.0 1.3 100 chr2R 22182913 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182963 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183013 intergenic MED16 +,CG11170 -,CG11275 + chr2R_4_22180001 chr2R_22180001 D20-c2 854 chr2R 22205869 22205879 chr2R 22205962 22205972 6 93 4.0 3.0 3.5 1.3 103 chr2R 22205869 intergenic CG3290 -,CG3292 - chr2R 22205920 intergenic CG3290 -,CG3292 - chr2R 22205972 intergenic CG3290 -,CG3292 - chr2R_6_22205001 chr2R_22205001 D20-c2 855 chr2R 22248840 22248875 chr2R 22248918 22248953 19 76 2.0 2.5 2.2 5.9 113 chr2R 22248840 intron dve + chr2R 22248896 intron dve + chr2R 22248953 intron dve + chr2R_19_22245001 chr2R_22245001 D20-c2 856 chr2R 22297705 22297727 chr2R 22297782 22297804 5 77 0.0 2.5 1.2 2.3 99 chr2R 22297705 intergenic not near genes chr2R 22297754 intergenic wdp - chr2R 22297804 intergenic wdp - chr2R_5_22295001 chr2R_22295001 D20-c2 857 chr2R 22349700 22349714 chr2R 22351485 22351499 jockey 4 1785 5.5 6.0 5.8 0.6 1799 chr2R 22349700 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351499 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 D20-c2 858 chr2R 22360380 22360393 chr2R 22360814 22360827 jockey 6 434 5.0 4.0 4.5 1.1 447 chr2R 22360380 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 D20-c2 859 chr2R 22377803 22377821 chr2R 22377889 22377908 11 87 3.5 2.5 3.0 2.8 105 chr2R 22377803 3` UTR Rtf1 + chr2R 22377856 3` UTR Rtf1 + chr2R 22377908 3` UTR Rtf1 + chr2R_11_22375001 chr2R_22375001 D20-c2 860 chr2R 22460379 22460405 chr2R 22460459 22460485 14 80 3.5 2.0 2.8 3.7 106 chr2R 22460379 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_14_22460001 chr2R_22460001 D20-c2 861 chr2R 22477578 22477609 chr2R 22477684 22477715 13 106 3.0 4.0 3.5 2.9 137 chr2R 22477578 intergenic CG45063 - chr2R 22477646 intergenic CG45063 - chr2R 22477715 intergenic CG45063 - chr2R_13_22475001 chr2R_22475001 D20-c2 862 chr2R 22503868 22503896 chr2R 22503964 22503992 5 96 0.0 2.0 1.0 2.5 124 chr2R 22503868 intron px - chr2R 22503930 intron px - chr2R 22503992 intron px - chr2R_5_22500001 chr2R_22500001 D20-c2 863 chr2R 22525761 22525782 chr2R 22529317 22529338 jockey 5 3556 3.5 5.5 4.5 0.9 3577 chr2R 22525761 intron px - chr2R 22527550 intron px - chr2R 22529338 intron px - chr2R_5_22525001 chr2R_22525001 D20-c2 864 chr2R 22575676 22575689 chr2R 22575745 22575769 7 77 1.5 2.5 2.0 2.3 93 chr2R 22575676 intron dnr1 - chr2R 22575722 intron dnr1 - chr2R 22575769 intron dnr1 - chr2R_7_22575001 chr2R_22575001 D20-c2 865 chr2R 22596210 22596239 chr2R 22596290 22596319 5 80 2.0 4.0 3.0 1.2 109 chr2R 22596210 3` UTR CG3927 + chr2R 22596264 3` UTR CG3927 + chr2R 22596319 3` UTR CG3927 + chr2R_5_22595001 chr2R_22595001 D20-c2 866 chr2R 22624778 22624812 chr2R 22627595 22627629 15 2817 23.0 37.0 30.0 0.5 2851 chr2R 22624778 intron CG33143 + chr2R 22626204 intron CG33143 + chr2R 22627629 intron CG33143 + chr2R_15_22625001 chr2R_22625001 D20-c2 867 chr2R 22774971 22775002 chr2R 22775391 22775422 jockey 9 420 2.5 3.0 2.8 2.4 451 chr2R 22774971 intron CG42260 - chr2R 22775196 intron CG42260 - chr2R 22775422 intron CG42260 - chr2R_9_22775001 chr2R_22775001 D20-c2 868 chr2R 22785729 22785759 chr2R 22785807 22785838 8 79 1.5 2.5 2.0 2.7 109 chr2R 22785729 intron CG42260 - chr2R 22785784 intron CG42260 - chr2R 22785838 intron CG42260 - chr2R_8_22785001 chr2R_22785001 D20-c2 869 chr2R 22835531 22835537 chr2R 22835645 22835651 4 114 18.5 1.0 9.8 0.4 120 chr2R 22835531 exon CG12490 + chr2R 22835591 exon CG12490 + chr2R 22835651 exon CG12490 + chr2R_4_22835001 chr2R_22835001 D20-c2 870 chr2R 22834834 22834838 chr2R 22837516 22837520 4 2682 14.5 20.5 17.5 0.2 2686 chr2R 22834834 intron CG12490 + chr2R 22836177 exon CG12490 + chr2R 22837520 intron CG9825 + chr2R_4_22835001 chr2R_22835001 D20-c2 871 chr2R 22907399 22907435 chr2R 22907493 22907522 18 93 7.0 6.5 6.8 2.3 123 chr2R 22907399 intron nahoda + chr2R 22907460 intron nahoda + chr2R 22907522 intron nahoda + chr2R_18_22905001 chr2R_22905001 D20-c2 872 chr2R 22945050 22945084 chr2R 22945165 22945199 17 115 6.0 4.0 5.0 2.8 149 chr2R 22945050 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945199 intergenic CG42694 + chr2R_17_22945001 chr2R_22945001 D20-c2 873 chr2R 22978286 22978316 chr2R 22978365 22978385 8 78 2.0 5.0 3.5 1.8 99 chr2R 22978286 intergenic not near genes chr2R 22978336 intergenic not near genes chr2R 22978385 intergenic not near genes chr2R_8_22975001 chr2R_22975001 D20-c2 874 chr2R 23029611 23029635 chr2R 23029689 23029713 15 78 6.5 6.0 6.2 2.1 102 chr2R 23029611 intron,intron twi +,CG42741 - chr2R 23029662 intron,intron twi +,CG42741 - chr2R 23029713 intron,intron twi +,CG42741 - chr2R_15_23025001 chr2R_23025001 D20-c2 875 chr2R 23084056 23084082 chr2R 23086888 23086914 7 2832 18.5 8.5 13.5 0.5 2858 chr2R 23084056 intergenic not near genes chr2R 23085485 intergenic CG9877 - chr2R 23086914 intergenic CG13538 + chr2R_7_23085001 chr2R_23085001 D20-c2 876 chr2R 23084013 23084047 chr2R 23087263 23087297 7 3250 14.5 23.5 19.0 0.3 3284 chr2R 23084013 intergenic not near genes chr2R 23085655 intergenic CG9877 - chr2R 23087297 exon CG13538 + chr2R_7_23085001 chr2R_23085001 D20-c2 877 chr2R 23158345 23158353 chr2R 23158423 23158431 5 77 5.5 8.5 7.0 0.6 86 chr2R 23158345 intron CG9899 + chr2R 23158388 intron CG9899 + chr2R 23158431 intron CG9899 + chr2R_5_23155001 chr2R_23155001 D20-c2 878 chr2R 23179708 23179722 chr2R 23179875 23179889 4 167 5.0 2.0 3.5 0.9 181 chr2R 23179708 intron CG34371 - chr2R 23179798 intron CG34371 - chr2R 23179889 intron CG34371 - chr2R_4_23175001 chr2R_23175001 D20-c2 879 chr2R 23186573 23186601 chr2R 23186652 23186680 7 79 4.0 3.0 3.5 1.6 107 chr2R 23186573 intron CG34371 - chr2R 23186626 intron CG34371 - chr2R 23186680 intron CG34371 - chr2R_7_23185001 chr2R_23185001 D20-c2 880 chr2R 23188555 23188576 chr2R 23188634 23188655 5 79 4.0 2.5 3.2 1.2 100 chr2R 23188555 intron CG34371 - chr2R 23188605 intron CG34371 - chr2R 23188655 intron CG34371 - chr2R_5_23185001 chr2R_23185001 D20-c2 881 chr2R 23254621 23254648 chr2R 23254702 23254729 15 81 6.5 7.0 6.8 1.9 108 chr2R 23254621 intergenic not near genes chr2R 23254675 intergenic not near genes chr2R 23254729 intergenic not near genes chr2R_15_23250001 chr2R_23250001 D20-c2 882 chr2R 23304279 23304285 chr2R 23304647 23304653 4 368 7.5 0.0 3.8 0.8 374 chr2R 23304279 intergenic not near genes chr2R 23304466 intergenic not near genes chr2R 23304653 intergenic not near genes chr2R_4_23300001 chr2R_23300001 D20-c2 883 chr2R 23463387 23463418 chr2R 23463467 23463498 15 80 4.5 4.0 4.2 2.9 111 chr2R 23463387 intron CG43795 + chr2R 23463442 intron CG43795 + chr2R 23463498 intron CG43795 + chr2R_15_23460001 chr2R_23460001 D20-c2 884 chr2R 23467570 23467585 chr2R 23467701 23467716 6 131 1.5 1.5 1.5 2.4 146 chr2R 23467570 intron CG43795 + chr2R 23467643 intron CG43795 + chr2R 23467716 intron CG43795 + chr2R_6_23465001 chr2R_23465001 D20-c2 885 chr2R 23482542 23482548 chr2R 23482621 23482627 4 79 3.5 0.0 1.8 1.4 85 chr2R 23482542 intron CG43795 + chr2R 23482584 intron CG43795 + chr2R 23482627 intron CG43795 + chr2R_4_23480001 chr2R_23480001 D20-c2 886 chr2R 23496738 23496765 chr2R 23497074 23497101 17 336 4.5 4.5 4.5 3.1 363 chr2R 23496738 intergenic not near genes chr2R 23496920 intergenic not near genes chr2R 23497101 intergenic not near genes chr2R_17_23495001 chr2R_23495001 D20-c2 887 chr2R 23529571 23529606 chr2R 23537148 23537183 412 16 7576 2.5 8.5 5.5 2.5 7612 chr2R 23529571 intron bw - chr2R 23533377 intron bw - chr2R 23537183 exon bw - chr2R_16_23530001 chr2R_23530001 D20-c2 888 chr2R 23563890 23563917 chr2R 23563971 23563996 11 80 6.0 3.0 4.5 2.0 106 chr2R 23563890 3` UTR Pi3K59F + chr2R 23563943 3` UTR Pi3K59F + chr2R 23563996 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_11_23560001 chr2R_23560001 D20-c2 889 chr2R 23589179 23589194 chr2R 23589257 23589270 5 78 5.0 7.5 6.2 0.7 91 chr2R 23589179 intron apt + chr2R 23589224 intron apt + chr2R 23589270 intron apt + chr2R_5_23585001 chr2R_23585001 D20-c2 890 chr2R 23607034 23607192 chr2R 23607116 23607286 10 84 3.0 3.5 3.2 2.4 252 chr2R 23607034 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607286 intron CG17664 - chr2R_10_23605001 chr2R_23605001 D20-c2 891 chr2R 23705625 23705656 chr2R 23710902 23710933 18 5278 48.5 52.5 50.5 0.3 5308 chr2R 23705625 exon l(2)not - chr2R 23708279 intron,exon l(2)not -,l(2)tid + chr2R 23710933 intergenic not near genes chr2R_18_23705001 chr2R_23705001 D20-c2 892 chr2R 23719797 23719819 chr2R 23720014 23720036 16 216 5.0 4.0 4.5 2.9 239 chr2R 23719797 intron,exon Sesn +,CG18128 - chr2R 23719916 intron,5` UTR Sesn +,CG18128 - chr2R 23720036 intron Sesn + chr2R_16_23715001 chr2R_23715001 D20-c2 893 chr2R 23744763 23744795 chr2R 23744843 23744875 17 80 3.5 6.5 5.0 2.8 112 chr2R 23744763 intron egl - chr2R 23744819 intron egl - chr2R 23744875 intron egl - chr2R_17_23740001 chr2R_23740001 D20-c2 894 chr2R 23752039 23752072 chr2R 23752123 23752177 6 87 3.0 9.5 6.2 0.8 138 chr2R 23752039 exon CG11300 + chr2R 23752108 exon CG11300 + chr2R 23752177 exon CG11300 + chr2R_6_23750001 chr2R_23750001 D20-c2 895 chr2R 23784469 23784507 chr2R 23784548 23784586 9 79 2.5 1.0 1.8 3.2 117 chr2R 23784469 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784586 intron CG9850 - chr2R_9_23780001 chr2R_23780001 D20-c2 896 chr2R 23914310 23914332 chr2R 23921935 23921957 412 14 7625 4.5 11.0 7.8 1.6 7647 chr2R 23914310 exon kcc + chr2R 23918134 intron kcc + chr2R 23921957 intron kcc + chr2R_14_23915001 chr2R_23915001 D20-c2 897 chr2R 23986514 23986546 chr2R 23986595 23986627 12 81 1.5 5.5 3.5 2.7 113 chr2R 23986514 intron Phm - chr2R 23986570 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_12_23985001 chr2R_23985001 D20-c2 898 chr2R 24008410 24008443 chr2R 24008497 24008530 16 86 1.5 2.5 2.0 5.3 120 chr2R 24008410 intron Unc-89 - chr2R 24008470 intron Unc-89 - chr2R 24008530 intron Unc-89 - chr2R_16_24005001 chr2R_24005001 D20-c2 899 chr2R 24107414 24107439 chr2R 24107496 24107521 8 82 1.5 3.5 2.5 2.3 107 chr2R 24107414 3` UTR CG4049 - chr2R 24107468 3` UTR CG4049 - chr2R 24107521 3` UTR CG4049 - chr2R_8_24105001 chr2R_24105001 D20-c2 900 chr2R 24147065 24147097 chr2R 24154644 24154676 412 16 7578 5.0 5.0 5.0 2.7 7611 chr2R 24147065 intron Dat + chr2R 24150870 intron Dat + chr2R 24154676 intron Dat + chr2R_16_24150001 chr2R_24150001 D20-c2 901 chr2R 24177233 24177268 chr2R 24184719 24184754 412 5 7486 2.5 1.0 1.8 1.8 7521 chr2R 24177233 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 D20-c2 902 chr2R 24303522 24303532 chr2R 24303602 24303612 4 80 5.5 8.0 6.8 0.5 90 chr2R 24303522 intergenic not near genes chr2R 24303567 intergenic not near genes chr2R 24303612 intergenic not near genes chr2R_4_24300001 chr2R_24300001 D20-c2 903 chr2R 24430922 24431094 chr2R 24431011 24431171 15 82 4.5 3.0 3.8 3.1 249 chr2R 24430922 intergenic CG15873 -,Pgam5-2 - chr2R 24431046 intergenic Pgam5-2 -,CG15873 - chr2R 24431171 intergenic Pgam5-2 -,CG15873 - chr2R_15_24430001 chr2R_24430001 D20-c2 904 chr2R 24432759 24432792 chr2R 24433266 24433299 10 506 2.0 4.0 3.0 2.5 540 chr2R 24432759 intergenic Pgam5-2 - chr2R 24433029 intergenic Pgam5-2 - chr2R 24433299 intergenic not near genes chr2R_10_24430001 chr2R_24430001 D20-c2 905 chr2R 24509307 24509327 chr2R 24509393 24509413 7 86 2.5 4.0 3.2 1.7 106 chr2R 24509307 intergenic Letm1 - chr2R 24509360 intergenic Letm1 - chr2R 24509413 intergenic Letm1 - chr2R_7_24505001 chr2R_24505001 D20-c2 906 chr2R 24590094 24590108 chr2R 24590203 24590217 9 109 1.0 3.5 2.2 2.8 123 chr2R 24590094 intron pio + chr2R 24590156 intron pio + chr2R 24590217 intron pio + chr2R_9_24590001 chr2R_24590001 D20-c2 907 chr2R 24647589 24647618 chr2R 24655147 24655176 412 8 7557 3.5 5.0 4.2 1.5 7587 chr2R 24647589 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655176 intergenic not near genes chr2R_8_24650001 chr2R_24650001 D20-c2 908 chr2R 24727884 24727911 chr2R 24735393 24735420 mdg1 7 7509 6.0 6.5 6.2 1.0 7536 chr2R 24727884 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735420 intron Mid1 - chr2R_7_24730001 chr2R_24730001 D20-c2 909 chr2R 24751666 24751698 chr2R 24751745 24751777 8 79 5.5 2.0 3.8 1.7 111 chr2R 24751666 intron CG30421 + chr2R 24751722 intron CG30421 + chr2R 24751777 intron CG30421 + chr2R_8_24750001 chr2R_24750001 D20-c2 910 chr2R 24763607 24763638 chr2R 24765584 24765615 G2 17 1976 3.0 4.0 3.5 3.8 2008 chr2R 24763607 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765615 exon CG3894 + chr2R_17_24760001 chr2R_24760001 D20-c2 911 chr2R 24859838 24859870 chr2R 24859925 24859957 13 87 2.0 2.0 2.0 4.3 119 chr2R 24859838 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859957 5` UTR CR44829 + chr2R_13_24855001 chr2R_24855001 D20-c2 912 chr2R 24884056 24884071 chr2R 24884139 24884154 6 83 3.5 2.5 3.0 1.5 98 chr2R 24884056 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884154 intron NKAIN + chr2R_6_24880001 chr2R_24880001 D20-c2 913 chr2R 24953279 24953300 chr2R 24953363 24953384 10 84 4.0 2.0 3.0 2.5 105 chr2R 24953279 3` UTR CG12851 + chr2R 24953332 3` UTR CG12851 + chr2R 24953384 3` UTR CG12851 + chr2R_10_24950001 chr2R_24950001 D20-c2 914 chr2R 25004889 25004923 chr2R 25004968 25005001 10 76 3.5 1.0 2.2 3.1 112 chr2R 25004889 intron zip - chr2R 25004945 intron zip - chr2R 25005001 intron zip - chr2R_10_25000001 chr2R_25000001 D20-c2 915 chr2R 25014552 25014571 chr2R 25014629 25014648 8 77 4.0 4.5 4.2 1.5 96 chr2R 25014552 intron uzip + chr2R 25014600 intron uzip + chr2R 25014648 intron uzip + chr2R_8_25010001 chr2R_25010001 D20-c2 916 chr2R 25104800 25104822 chr2R 25104896 25104918 6 96 1.5 2.5 2.0 2.0 118 chr2R 25104800 intron lov - chr2R 25104859 intron lov - chr2R 25104918 intron lov - chr2R_6_25100001 chr2R_25100001 D20-c2 917 chr2R 25124456 25124485 chr2R 25124548 25124577 7 92 2.0 2.0 2.0 2.3 121 chr2R 25124456 intron lov - chr2R 25124516 intron lov - chr2R 25124577 intron lov - chr2R_7_25120001 chr2R_25120001 D20-c2 918 chr2R 25141652 25141683 chr2R 25159343 25159374 roo 5 17691 3.0 2.5 2.8 1.3 17722 chr2R 25141652 intergenic not near genes chr2R 25150513 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_5_25150001 chr2R_25150001 D20-c2 919 chr2R 25202259 25202278 chr2R 25202367 25202377 6 104 2.5 6.5 4.5 1.1 118 chr2R 25202259 intron CG9380 - chr2R 25202318 intron CG9380 - chr2R 25202377 intron CG9380 - chr2R_6_25200001 chr2R_25200001 D20-c2 920 chr2R 25253444 25253466 chr2R 25253521 25253543 6 77 3.0 2.5 2.8 1.6 99 chr2R 25253444 intron,intron CG9380 -,CG30428 + chr2R 25253494 intron,intron CG9380 -,CG30428 + chr2R 25253543 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 D20-c2 921 chr3L 86461 86486 chr3L 86541 86566 22 80 3.5 6.5 5.0 3.7 105 chr3L 86461 intergenic not near genes chr3L 86514 intergenic not near genes chr3L 86566 intergenic not near genes chr3L_22_85001 chr3L_85001 D20-c2 922 chr3L 87054 87088 chr3L 87337 87371 22 283 2.5 6.0 4.2 4.2 317 chr3L 87054 intergenic not near genes chr3L 87212 intergenic not near genes chr3L 87371 intergenic not near genes chr3L_22_85001 chr3L_85001 D20-c2 923 chr3L 99663 99699 chr3L 99750 99786 20 86 5.0 2.5 3.8 4.2 123 chr3L 99663 intergenic not near genes chr3L 99724 intergenic not near genes chr3L 99786 intergenic not near genes chr3L_20_95001 chr3L_95001 D20-c2 924 chr3L 105744 105776 chr3L 105837 105872 16 96 5.0 3.0 4.0 3.2 128 chr3L 105744 intergenic not near genes chr3L 105808 intergenic not near genes chr3L 105872 intergenic not near genes chr3L_16_105001 chr3L_105001 D20-c2 925 chr3L 108948 108982 chr3L 109028 109062 26 80 5.0 11.0 8.0 2.9 114 chr3L 108948 intergenic not near genes chr3L 109005 intergenic not near genes chr3L 109062 intergenic not near genes chr3L_26_105001 chr3L_105001 D20-c2 926 chr3L 110208 110243 chr3L 119376 119411 roo 19 9168 7.5 6.5 7.0 2.4 9203 chr3L 110208 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_19_110001 chr3L_110001 D20-c2 927 chr3L 365526 365552 chr3L 365613 365639 17 87 7.5 7.5 7.5 2.0 113 chr3L 365526 3` UTR CG1233 + chr3L 365582 3` UTR CG1233 + chr3L 365639 3` UTR CG1233 + chr3L_17_365001 chr3L_365001 D20-c2 928 chr3L 393177 393208 chr3L 393277 393286 14 98 7.5 6.5 7.0 1.8 109 chr3L 393177 3` UTR CR45378 - chr3L 393232 3` UTR CR45378 - chr3L 393286 intergenic CR45378 -,CR43969 + chr3L_14_390001 chr3L_390001 D20-c2 929 chr3L 402686 402717 chr3L 409740 409771 297 35 7054 12.5 10.0 11.2 2.9 7085 chr3L 402686 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_35_405001 chr3L_405001 D20-c2 930 chr3L 459976 460006 chr3L 460054 460084 22 78 11.5 7.0 9.2 2.2 108 chr3L 459976 intron klar - chr3L 460030 intron klar - chr3L 460084 intron klar - chr3L_22_460001 chr3L_460001 D20-c2 931 chr3L 494594 494622 chr3L 494677 494705 13 83 4.0 0.0 2.0 4.3 111 chr3L 494594 intron klar - chr3L 494650 intron klar - chr3L 494705 intron klar - chr3L_13_490001 chr3L_490001 D20-c2 932 chr3L 524748 524777 chr3L 524832 524860 4 84 0.0 4.0 2.0 1.3 112 chr3L 524748 intron klar - chr3L 524804 intron klar - chr3L 524860 intron klar - chr3L_4_520001 chr3L_520001 D20-c2 933 chr3L 540717 540749 chr3L 540812 540844 29 95 8.5 9.0 8.8 3.0 127 chr3L 540717 intergenic klar -,CG17180 + chr3L 540780 intergenic CG17180 +,klar - chr3L 540844 intergenic CG17180 +,klar - chr3L_29_540001 chr3L_540001 D20-c2 934 chr3L 563968 564002 chr3L 564148 564182 22 180 7.0 5.0 6.0 3.1 214 chr3L 563968 intron hipk + chr3L 564075 intron hipk + chr3L 564182 intron hipk + chr3L_22_560001 chr3L_560001 D20-c2 935 chr3L 642467 642502 chr3L 642559 642594 18 92 5.5 7.5 6.5 2.4 127 chr3L 642467 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642594 5` UTR CR43334 + chr3L_18_640001 chr3L_640001 D20-c2 936 chr3L 651385 651424 chr3L 651474 651513 26 89 9.5 8.5 9.0 2.6 128 chr3L 651385 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651513 intergenic CG3402 -,Gale + chr3L_26_650001 chr3L_650001 D20-c2 937 chr3L 705896 705931 chr3L 705993 706028 15 97 6.5 5.0 5.8 2.2 132 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706028 3` UTR CG13895 - chr3L_15_705001 chr3L_705001 D20-c2 938 chr3L 789911 789945 chr3L 790397 790431 roo 10 486 5.0 3.5 4.2 1.9 520 chr3L 789911 intergenic not near genes chr3L 790171 intergenic not near genes chr3L 790431 intergenic not near genes chr3L_10_790001 chr3L_790001 D20-c2 939 chr3L 857999 858032 chr3L 866481 866514 Tirant 23 8481 4.0 8.0 6.0 3.3 8515 chr3L 857999 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866514 5` UTR CG12502 + chr3L_23_860001 chr3L_860001 D20-c2 940 chr3L 905073 905092 chr3L 905158 905177 4 85 0.0 3.5 1.8 1.4 104 chr3L 905073 intergenic not near genes chr3L 905125 intergenic not near genes chr3L 905177 intergenic not near genes chr3L_4_905001 chr3L_905001 D20-c2 941 chr3L 925175 925208 chr3L 932602 932635 mdg1 15 7427 2.5 3.0 2.8 3.9 7460 chr3L 925175 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_15_925001 chr3L_925001 D20-c2 942 chr3L 933908 933942 chr3L 934012 934046 16 104 4.0 4.5 4.2 3.1 138 chr3L 933908 intron Glut1 + chr3L 933977 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_16_930001 chr3L_930001 D20-c2 943 chr3L 939771 939800 chr3L 940893 940922 jockey 13 1122 2.5 7.0 4.8 2.2 1151 chr3L 939771 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_13_940001 chr3L_940001 D20-c2 944 chr3L 987461 987472 chr3L 987539 987550 6 77 16.0 15.0 15.5 0.4 89 chr3L 987461 intergenic not near genes chr3L 987506 intergenic not near genes chr3L 987550 intergenic not near genes chr3L_6_985001 chr3L_985001 D20-c2 945 chr3L 1040549 1040581 chr3L 1040632 1040666 15 85 5.0 7.0 6.0 2.1 117 chr3L 1040549 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040666 intron bab1 - chr3L_15_1040001 chr3L_1040001 D20-c2 946 chr3L 1047380 1047385 chr3L 1055162 1055190 412 8 7799 3.0 1.5 2.2 2.5 7810 chr3L 1047380 intron bab1 - chr3L 1051285 intron bab1 - chr3L 1055190 intron bab1 - chr3L_8_1050001 chr3L_1050001 D20-c2 947 chr3L 1077762 1077783 chr3L 1078039 1078060 10 277 4.0 6.0 5.0 1.7 298 chr3L 1077762 intron bab1 - chr3L 1077911 intron bab1 - chr3L 1078060 intron bab1 - chr3L_10_1075001 chr3L_1075001 D20-c2 948 chr3L 1109633 1109666 chr3L 1109722 1109755 18 89 6.5 5.0 5.8 2.6 122 chr3L 1109633 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_18_1105001 chr3L_1105001 D20-c2 949 chr3L 1145239 1145266 chr3L 1145319 1145346 12 80 4.0 1.5 2.8 3.2 107 chr3L 1145239 intron bab2 - chr3L 1145292 intron bab2 - chr3L 1145346 intron bab2 - chr3L_12_1145001 chr3L_1145001 D20-c2 950 chr3L 1154128 1154155 chr3L 1163279 1163306 roo 9 9151 3.5 3.0 3.2 2.1 9178 chr3L 1154128 intron bab2 - chr3L 1158717 intron bab2 - chr3L 1163306 intron bab2 - chr3L_9_1155001 chr3L_1155001 D20-c2 951 chr3L 1219593 1219625 chr3L 1227327 1227359 412 17 7734 5.0 5.5 5.2 2.7 7766 chr3L 1219593 intron mwh + chr3L 1223476 intron mwh + chr3L 1227359 intron mwh + chr3L_17_1220001 chr3L_1220001 D20-c2 952 chr3L 1257631 1257654 chr3L 1257712 1257735 11 81 0.0 2.5 1.2 5.0 104 chr3L 1257631 intron CG9134 + chr3L 1257683 intron CG9134 + chr3L 1257735 intron CG9134 + chr3L_11_1255001 chr3L_1255001 D20-c2 953 chr3L 1260148 1260159 chr3L 1260229 1260240 8 81 4.5 3.5 4.0 1.6 92 chr3L 1260148 intron CG9134 + chr3L 1260194 intron CG9134 + chr3L 1260240 intron CG9134 + chr3L_8_1260001 chr3L_1260001 D20-c2 954 chr3L 1347156 1347193 chr3L 1347242 1347279 34 86 7.0 10.0 8.5 3.6 123 chr3L 1347156 intron Ptp61F - chr3L 1347218 intron Ptp61F - chr3L 1347279 intron Ptp61F - chr3L_34_1345001 chr3L_1345001 D20-c2 955 chr3L 1357117 1357134 chr3L 1357197 1357214 7 80 8.5 2.0 5.2 1.1 97 chr3L 1357117 intron Ptp61F - chr3L 1357166 intron Ptp61F - chr3L 1357214 intron Ptp61F - chr3L_7_1355001 chr3L_1355001 D20-c2 956 chr3L 1374429 1374445 chr3L 1374507 1374523 5 78 6.5 5.5 6.0 0.7 94 chr3L 1374429 intron,intron Ptp61F -,ru + chr3L 1374476 intron,intron Ptp61F -,ru + chr3L 1374523 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 D20-c2 957 chr3L 1385174 1385207 chr3L 1385263 1385296 15 89 3.0 5.5 4.2 2.9 122 chr3L 1385174 intron,intron Ptp61F -,ru + chr3L 1385235 intron,intron Ptp61F -,ru + chr3L 1385296 intron,intron Ptp61F -,ru + chr3L_15_1385001 chr3L_1385001 D20-c2 958 chr3L 1505994 1506031 chr3L 1513592 1513629 17.6 22 7598 7.0 2.5 4.8 3.8 7635 chr3L 1505994 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_22_1505001 chr3L_1505001 D20-c2 959 chr3L 1639216 1639242 chr3L 1639398 1639424 13 182 1.0 4.5 2.8 3.4 208 chr3L 1639216 5` UTR metl - chr3L 1639320 intergenic metl -,Bgb + chr3L 1639424 intergenic metl -,Bgb + chr3L_13_1635001 chr3L_1635001 D20-c2 960 chr3L 1684020 1684043 chr3L 1684099 1684114 6 78 3.0 5.0 4.0 1.2 94 chr3L 1684020 intron CG7991 + chr3L 1684067 intron CG7991 + chr3L 1684114 intron CG7991 + chr3L_6_1680001 chr3L_1680001 D20-c2 961 chr3L 1710987 1710994 chr3L 1711070 1711077 5 83 13.5 0.0 6.8 0.6 90 chr3L 1710987 intron CG7991 + chr3L 1711032 intron CG7991 + chr3L 1711077 intron CG7991 + chr3L_5_1710001 chr3L_1710001 D20-c2 962 chr3L 1848638 1848670 chr3L 1848717 1848749 13 79 2.5 5.0 3.8 2.7 111 chr3L 1848638 intergenic not near genes chr3L 1848694 intergenic not near genes chr3L 1848749 intergenic not near genes chr3L_13_1845001 chr3L_1845001 D20-c2 963 chr3L 1922437 1922444 chr3L 1922518 1922525 9 80 5.5 9.5 7.5 1.1 88 chr3L 1922437 intron Dbx + chr3L 1922481 intron Dbx + chr3L 1922525 intron Dbx + chr3L_9_1920001 chr3L_1920001 D20-c2 964 chr3L 1978700 1978724 chr3L 1978921 1978945 11 221 35.5 41.0 38.2 0.3 245 chr3L 1978700 intergenic not near genes chr3L 1978822 intergenic not near genes chr3L 1978945 intergenic not near genes chr3L_11_1975001 chr3L_1975001 D20-c2 965 chr3L 2006465 2006501 chr3L 2006545 2006582 11 81 3.0 4.0 3.5 2.4 117 chr3L 2006465 intergenic not near genes chr3L 2006524 intergenic not near genes chr3L 2006582 intergenic not near genes chr3L_11_2005001 chr3L_2005001 D20-c2 966 chr3L 2108260 2108270 chr3L 2113465 2113475 copia 5 5205 3.5 3.5 3.5 1.1 5215 chr3L 2108260 intron sls - chr3L 2110868 intron sls - chr3L 2113475 intron sls - chr3L_5_2110001 chr3L_2110001 D20-c2 967 chr3L 2139206 2139234 chr3L 2139288 2139316 11 82 4.0 3.5 3.8 2.3 110 chr3L 2139206 intron zormin - chr3L 2139261 intron zormin - chr3L 2139316 intron zormin - chr3L_11_2135001 chr3L_2135001 D20-c2 968 chr3L 2168769 2168804 chr3L 2168861 2168896 20 92 5.0 4.0 4.5 3.6 127 chr3L 2168769 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168896 intron CG15879 - chr3L_20_2165001 chr3L_2165001 D20-c2 969 chr3L 2181174 2181200 chr3L 2181254 2181280 17 80 2.5 2.5 2.5 4.9 106 chr3L 2181174 intergenic not near genes chr3L 2181227 intergenic not near genes chr3L 2181280 intergenic not near genes chr3L_17_2180001 chr3L_2180001 D20-c2 970 chr3L 2199808 2199820 chr3L 2199885 2199897 7 77 0.0 4.5 2.2 2.2 89 chr3L 2199808 intergenic not near genes chr3L 2199852 intergenic not near genes chr3L 2199897 intergenic not near genes chr3L_7_2195001 chr3L_2195001 D20-c2 971 chr3L 2277975 2278007 chr3L 2278172 2278204 20 197 7.5 2.5 5.0 3.3 229 chr3L 2277975 3` UTR yellow-g2 + chr3L 2278090 intergenic yellow-g2 + chr3L 2278204 intergenic yellow-g2 + chr3L_20_2275001 chr3L_2275001 D20-c2 972 chr3L 2308003 2308035 chr3L 2308110 2308142 12 107 4.0 5.5 4.8 2.1 139 chr3L 2308003 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_12_2305001 chr3L_2305001 D20-c2 973 chr3L 2310152 2310179 chr3L 2310896 2310923 13 744 4.0 5.0 4.5 2.4 771 chr3L 2310152 intergenic not near genes chr3L 2310538 intergenic not near genes chr3L 2310923 intergenic not near genes chr3L_13_2310001 chr3L_2310001 D20-c2 974 chr3L 2316685 2316693 chr3L 2316771 2316779 4 86 12.5 6.0 9.2 0.4 94 chr3L 2316685 intergenic CR45427 - chr3L 2316732 intergenic CR45427 - chr3L 2316779 intergenic CR45427 - chr3L_4_2315001 chr3L_2315001 D20-c2 975 chr3L 2331580 2331614 chr3L 2331658 2331692 17 78 4.5 5.5 5.0 2.8 112 chr3L 2331580 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331692 intron MsR1 + chr3L_17_2330001 chr3L_2330001 D20-c2 976 chr3L 2355446 2355450 chr3L 2355635 2355639 5 189 7.5 3.5 5.5 0.8 193 chr3L 2355446 intergenic not near genes chr3L 2355542 intergenic not near genes chr3L 2355639 intergenic not near genes chr3L_5_2355001 chr3L_2355001 D20-c2 977 chr3L 2356075 2356096 chr3L 2356164 2356185 4 88 2.0 5.0 3.5 0.9 110 chr3L 2356075 intergenic not near genes chr3L 2356130 intergenic not near genes chr3L 2356185 intergenic not near genes chr3L_4_2355001 chr3L_2355001 D20-c2 978 chr3L 2411334 2411344 chr3L 2411415 2411425 5 81 1.5 3.0 2.2 1.6 91 chr3L 2411334 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411425 intron CG45186 + chr3L_5_2410001 chr3L_2410001 D20-c2 979 chr3L 2429059 2429078 chr3L 2429153 2429172 11 92 8.0 5.0 6.5 1.5 113 chr3L 2429059 intron CG45186 + chr3L 2429116 intron CG45186 + chr3L 2429172 intron CG45186 + chr3L_11_2425001 chr3L_2425001 D20-c2 980 chr3L 2433503 2433526 chr3L 2433587 2433610 7 84 2.0 2.5 2.2 2.2 107 chr3L 2433503 intron CG45186 + chr3L 2433556 intron CG45186 + chr3L 2433610 intron CG45186 + chr3L_7_2430001 chr3L_2430001 D20-c2 981 chr3L 2447501 2447538 chr3L 2456658 2456695 roo 15 9157 4.5 4.0 4.2 2.9 9194 chr3L 2447501 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456695 intron CG45186 + chr3L_15_2450001 chr3L_2450001 D20-c2 982 chr3L 2520648 2520678 chr3L 2520745 2520775 8 97 4.0 5.5 4.8 1.4 127 chr3L 2520648 intron Spn - chr3L 2520712 intron Spn - chr3L 2520775 intron Spn - chr3L_8_2520001 chr3L_2520001 D20-c2 983 chr3L 2533649 2533682 chr3L 2533732 2533765 17 82 10.0 12.0 11.0 1.4 116 chr3L 2533649 intron Spn - chr3L 2533707 intron Spn - chr3L 2533765 intron Spn - chr3L_17_2530001 chr3L_2530001 D20-c2 984 chr3L 2548252 2548289 chr3L 2548342 2548367 25 89 4.5 7.0 5.8 3.7 115 chr3L 2548252 intron Spn - chr3L 2548310 intron Spn - chr3L 2548367 intron Spn - chr3L_25_2545001 chr3L_2545001 D20-c2 985 chr3L 2551741 2551776 chr3L 2553589 2553624 11 1848 25.0 43.5 34.2 0.3 1883 chr3L 2551741 intron Spn - chr3L 2552682 intron Spn - chr3L 2553624 intron Spn - chr3L_11_2550001 chr3L_2550001 D20-c2 986 chr3L 2561527 2561561 chr3L 2561605 2561639 5 78 4.5 2.0 3.2 1.2 112 chr3L 2561527 intron msn - chr3L 2561583 intron msn - chr3L 2561639 intron msn - chr3L_5_2560001 chr3L_2560001 D20-c2 987 chr3L 2927837 2927872 chr3L 2936115 2936149 Tirant 8 8278 3.0 0.5 1.8 2.9 8312 chr3L 2927837 intron Shab + chr3L 2931993 intron Shab + chr3L 2936149 intron Shab + chr3L_8_2930001 chr3L_2930001 D20-c2 988 chr3L 3061282 3061317 chr3L 3069866 3069901 Tirant 10 8584 3.0 2.5 2.8 2.6 8619 chr3L 3061282 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069901 intron CG32486 - chr3L_10_3065001 chr3L_3065001 D20-c2 989 chr3L 3165349 3165382 chr3L 3165433 3165465 12 84 4.0 3.5 3.8 2.5 116 chr3L 3165349 intron,intron Asciz -,CG32280 + chr3L 3165407 intron,intron Asciz -,CG32280 + chr3L 3165465 intron,intron Asciz -,CG32280 + chr3L_12_3165001 chr3L_3165001 D20-c2 990 chr3L 3178726 3178753 chr3L 3178810 3178837 12 84 3.5 0.0 1.8 4.3 111 chr3L 3178726 intergenic CG14964 -,Girdin + chr3L 3178782 intergenic Girdin +,CG14964 - chr3L 3178837 intergenic Girdin +,CG14964 - chr3L_12_3175001 chr3L_3175001 D20-c2 991 chr3L 3281438 3281475 chr3L 3281935 3281972 Doc 19 496 2.5 5.5 4.0 3.8 534 chr3L 3281438 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281972 intron CG12017 + chr3L_19_3280001 chr3L_3280001 D20-c2 992 chr3L 3310293 3310325 chr3L 3310373 3310405 12 80 1.0 2.5 1.8 4.3 112 chr3L 3310293 intron ZnT63C + chr3L 3310349 intron ZnT63C + chr3L 3310405 intron ZnT63C + chr3L_12_3310001 chr3L_3310001 D20-c2 993 chr3L 3314174 3314203 chr3L 3314283 3314313 15 110 2.0 8.5 5.2 2.4 139 chr3L 3314174 intergenic ZnT63C +,Drsl2 + chr3L 3314244 intergenic Drsl2 +,ZnT63C + chr3L 3314313 intergenic Drsl2 +,ZnT63C + chr3L_15_3310001 chr3L_3310001 D20-c2 994 chr3L 3317538 3317562 chr3L 3317618 3317639 5 79 0.0 2.0 1.0 2.5 101 chr3L 3317538 intergenic Drsl5 +,PIG-C - chr3L 3317588 intergenic PIG-C -,Drsl5 + chr3L 3317639 intergenic PIG-C -,Drsl5 + chr3L_5_3315001 chr3L_3315001 D20-c2 995 chr3L 3412990 3412993 chr3L 3413067 3413070 4 77 0.5 12.5 6.5 0.5 80 chr3L 3412990 intron sty - chr3L 3413030 intron sty - chr3L 3413070 intron sty - chr3L_4_3410001 chr3L_3410001 D20-c2 996 chr3L 3436295 3436313 chr3L 3436375 3436393 8 80 1.0 1.0 1.0 4.0 98 chr3L 3436295 intron eIF5B - chr3L 3436344 intron eIF5B - chr3L 3436393 intron eIF5B - chr3L_8_3435001 chr3L_3435001 D20-c2 997 chr3L 3470158 3470188 chr3L 3470235 3470265 5 77 0.5 2.5 1.5 2.0 107 chr3L 3470158 intron CG14971 - chr3L 3470212 intron CG14971 - chr3L 3470265 intron CG14971 - chr3L_5_3470001 chr3L_3470001 D20-c2 998 chr3L 3475074 3475109 chr3L 3475519 3475554 jockey 12 445 2.0 4.5 3.2 2.9 480 chr3L 3475074 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_12_3475001 chr3L_3475001 D20-c2 999 chr3L 3500150 3500181 chr3L 3500240 3500271 8 90 2.5 6.0 4.2 1.5 121 chr3L 3500150 intron CG42324 + chr3L 3500210 intron CG42324 + chr3L 3500271 intron CG42324 + chr3L_8_3500001 chr3L_3500001 D20-c2 1000 chr3L 3565937 3565967 chr3L 3566014 3566037 8 76 5.5 2.0 3.8 1.7 100 chr3L 3565937 intron Eip63E + chr3L 3565987 intron Eip63E + chr3L 3566037 intron Eip63E + chr3L_8_3565001 chr3L_3565001 D20-c2 1001 chr3L 3566398 3566416 chr3L 3566482 3566500 4 84 3.0 2.5 2.8 1.1 102 chr3L 3566398 intron Eip63E + chr3L 3566449 intron Eip63E + chr3L 3566500 intron Eip63E + chr3L_4_3565001 chr3L_3565001 D20-c2 1002 chr3L 3601298 3601324 chr3L 3606610 3606636 copia 5 5312 4.5 1.5 3.0 1.2 5338 chr3L 3601298 intron Eip63E + chr3L 3603967 intron Eip63E + chr3L 3606636 intron Eip63E + chr3L_5_3600001 chr3L_3600001 D20-c2 1003 chr3L 3620760 3620790 chr3L 3620851 3620881 6 91 3.5 4.0 3.8 1.2 121 chr3L 3620760 exon CG14974 - chr3L 3620820 intron CG14974 - chr3L 3620881 exon CG14974 - chr3L_6_3620001 chr3L_3620001 D20-c2 1004 chr3L 3638558 3638585 chr3L 3638681 3638709 5 124 1.5 0.5 1.0 2.5 151 chr3L 3638558 intron dar1 + chr3L 3638634 intron dar1 + chr3L 3638709 intron dar1 + chr3L_5_3635001 chr3L_3635001 D20-c2 1005 chr3L 3709456 3709467 chr3L 3709539 3709550 9 83 3.5 1.5 2.5 2.6 94 chr3L 3709456 intergenic CR45675 + chr3L 3709503 intergenic not near genes chr3L 3709550 intergenic not near genes chr3L_9_3705001 chr3L_3705001 D20-c2 1006 chr3L 3797387 3797422 chr3L 3797527 3797562 10 140 0.5 1.5 1.0 5.0 175 chr3L 3797387 intron CG32264 - chr3L 3797474 intron CG32264 - chr3L 3797562 intron CG32264 - chr3L_10_3795001 chr3L_3795001 D20-c2 1007 chr3L 3798039 3798071 chr3L 3798120 3798152 8 81 2.5 2.0 2.2 2.5 113 chr3L 3798039 intron CG32264 - chr3L 3798096 intron CG32264 - chr3L 3798152 intron CG32264 - chr3L_8_3795001 chr3L_3795001 D20-c2 1008 chr3L 3833740 3833768 chr3L 3833982 3834010 pogo 7 242 3.5 3.5 3.5 1.6 270 chr3L 3833740 intron enc + chr3L 3833875 intron enc + chr3L 3834010 intron enc + chr3L_7_3830001 chr3L_3830001 D20-c2 1009 chr3L 4015736 4015749 chr3L 4015820 4015833 5 84 3.5 3.0 3.2 1.2 97 chr3L 4015736 intergenic not near genes chr3L 4015784 intergenic not near genes chr3L 4015833 intergenic not near genes chr3L_5_4015001 chr3L_4015001 D20-c2 1010 chr3L 4146814 4146840 chr3L 4146897 4146923 5 83 0.0 2.0 1.0 2.5 109 chr3L 4146814 intergenic not near genes chr3L 4146868 intergenic not near genes chr3L 4146923 intergenic not near genes chr3L_5_4145001 chr3L_4145001 D20-c2 1011 chr3L 4229727 4229767 chr3L 4229823 4229863 19 94 1.5 3.0 2.2 5.9 136 chr3L 4229727 intron ImpL2 - chr3L 4229795 intron ImpL2 - chr3L 4229863 intron ImpL2 - chr3L_19_4225001 chr3L_4225001 D20-c2 1012 chr3L 4676038 4676053 chr3L 4676120 4676135 8 82 1.0 0.0 0.5 5.3 97 chr3L 4676038 intron axo - chr3L 4676086 intron axo - chr3L 4676135 intron axo - chr3L_8_4675001 chr3L_4675001 D20-c2 1013 chr3L 4837892 4837920 chr3L 4837972 4838000 8 80 1.0 2.5 1.8 2.9 108 chr3L 4837892 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838000 3` UTR CG13707 - chr3L_8_4835001 chr3L_4835001 D20-c2 1014 chr3L 4840405 4840420 chr3L 4840503 4840530 7 107 0.5 1.5 1.0 3.5 125 chr3L 4840405 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840530 intergenic CG13707 - chr3L_7_4840001 chr3L_4840001 D20-c2 1015 chr3L 4858304 4858337 chr3L 4858395 4858428 14 91 5.5 7.0 6.2 1.9 124 chr3L 4858304 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858428 intergenic not near genes chr3L_14_4855001 chr3L_4855001 D20-c2 1016 chr3L 4901125 4901155 chr3L 4907316 4907346 diver 7 6191 2.5 1.5 2.0 2.3 6221 chr3L 4901125 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_7_4900001 chr3L_4900001 D20-c2 1017 chr3L 4941832 4941856 chr3L 4942116 4942140 6 284 3.0 2.5 2.8 1.6 308 chr3L 4941832 intron Con - chr3L 4941986 intron Con - chr3L 4942140 intron Con - chr3L_6_4940001 chr3L_4940001 D20-c2 1018 chr3L 4942721 4942757 chr3L 4942802 4942838 11 79 3.0 0.5 1.8 3.9 117 chr3L 4942721 intron Con - chr3L 4942780 intron Con - chr3L 4942838 intron Con - chr3L_11_4940001 chr3L_4940001 D20-c2 1019 chr3L 4989175 4989190 chr3L 4989266 4989281 6 91 0.0 2.0 1.0 3.0 106 chr3L 4989175 intron Con - chr3L 4989228 intron Con - chr3L 4989281 intron Con - chr3L_6_4985001 chr3L_4985001 D20-c2 1020 chr3L 5045453 5045482 chr3L 5050235 5050264 Doc 8 4782 4.0 1.0 2.5 2.3 4811 chr3L 5045453 intron Con - chr3L 5047858 intron Con - chr3L 5050264 intron Con - chr3L_8_5045001 chr3L_5045001 D20-c2 1021 chr3L 5054941 5054973 chr3L 5055022 5055054 9 77 4.0 6.0 5.0 1.5 113 chr3L 5054941 intron Con - chr3L 5054998 intron Con - chr3L 5055054 intron Con - chr3L_9_5050001 chr3L_5050001 D20-c2 1022 chr3L 5081851 5081885 chr3L 5081931 5081965 17 80 4.0 2.0 3.0 4.2 114 chr3L 5081851 intergenic not near genes chr3L 5081908 intergenic not near genes chr3L 5081965 intergenic not near genes chr3L_17_5080001 chr3L_5080001 D20-c2 1023 chr3L 5104481 5104509 chr3L 5124616 5124644 13 20135 1.5 4.5 3.0 3.2 20163 chr3L 5104481 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_13_5110001 chr3L_5110001 D20-c2 1024 chr3L 5164636 5164669 chr3L 5164713 5164746 10 77 2.5 2.0 2.2 3.1 110 chr3L 5164636 intron shep - chr3L 5164691 intron shep - chr3L 5164746 intron shep - chr3L_10_5160001 chr3L_5160001 D20-c2 1025 chr3L 5177664 5177677 chr3L 5177762 5177775 5 98 4.0 2.0 3.0 1.2 111 chr3L 5177664 intron shep - chr3L 5177720 intron shep - chr3L 5177775 intron shep - chr3L_5_5175001 chr3L_5175001 D20-c2 1026 chr3L 5458059 5458066 chr3L 5466662 5466669 Max-element 5 8603 11.0 2.0 6.5 0.7 8610 chr3L 5458059 intergenic not near genes chr3L 5462364 intergenic not near genes chr3L 5466669 intergenic not near genes chr3L_5_5460001 chr3L_5460001 D20-c2 1027 chr3L 5485261 5485278 chr3L 5485569 5485586 6 308 1.5 1.0 1.2 2.7 325 chr3L 5485261 intergenic not near genes chr3L 5485424 intergenic not near genes chr3L 5485586 intergenic not near genes chr3L_6_5485001 chr3L_5485001 D20-c2 1028 chr3L 5498385 5498434 chr3L 5498475 5498512 7 80 0.0 4.0 2.0 2.3 127 chr3L 5498385 exon blanks - chr3L 5498448 exon blanks - chr3L 5498512 exon blanks - chr3L_7_5495001 chr3L_5495001 D20-c2 1029 chr3L 5527599 5527633 chr3L 5527750 5527784 8 151 19.5 25.0 22.2 0.3 185 chr3L 5527599 intron Lkr - chr3L 5527692 intron Lkr - chr3L 5527784 intron Lkr - chr3L_8_5525001 chr3L_5525001 D20-c2 1030 chr3L 5537733 5537754 chr3L 5538076 5538097 jockey 7 342 3.5 2.0 2.8 1.8 364 chr3L 5537733 intergenic not near genes chr3L 5537915 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_7_5535001 chr3L_5535001 D20-c2 1031 chr3L 5727177 5727194 chr3L 5727651 5727668 6 474 4.0 4.5 4.2 1.2 491 chr3L 5727177 intron sif + chr3L 5727422 intron sif + chr3L 5727668 intron sif + chr3L_6_5725001 chr3L_5725001 D20-c2 1032 chr3L 5818272 5818293 chr3L 5818356 5818378 11 85 2.0 3.0 2.5 3.1 106 chr3L 5818272 exon vn - chr3L 5818325 intron vn - chr3L 5818378 intron vn - chr3L_11_5815001 chr3L_5815001 D20-c2 1033 chr3L 5908084 5908107 chr3L 5908165 5908188 6 81 1.5 0.0 0.8 3.3 104 chr3L 5908084 intron CG13288 + chr3L 5908136 intron CG13288 + chr3L 5908188 intron CG13288 + chr3L_6_5905001 chr3L_5905001 D20-c2 1034 chr3L 5910033 5910061 chr3L 5910275 5910303 pogo 6 242 1.0 4.0 2.5 1.7 270 chr3L 5910033 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910303 intron CG13288 + chr3L_6_5910001 chr3L_5910001 D20-c2 1035 chr3L 5926319 5926349 chr3L 5926510 5926540 BS 15 190 2.5 6.5 4.5 2.7 221 chr3L 5926319 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_15_5925001 chr3L_5925001 D20-c2 1036 chr3L 5940060 5940091 chr3L 5940291 5940322 20 231 4.0 4.5 4.2 3.8 262 chr3L 5940060 intron CG33993 - chr3L 5940191 intron CG33993 - chr3L 5940322 intron CG33993 - chr3L_20_5940001 chr3L_5940001 D20-c2 1037 chr3L 5992592 5992621 chr3L 5992694 5992724 14 102 5.5 2.0 3.8 2.9 132 chr3L 5992592 intergenic not near genes chr3L 5992658 intergenic not near genes chr3L 5992724 intergenic not near genes chr3L_14_5990001 chr3L_5990001 D20-c2 1038 chr3L 6001684 6001716 chr3L 6004385 6004417 jockey 8 2701 3.5 0.0 1.8 2.9 2733 chr3L 6001684 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_8_6000001 chr3L_6000001 D20-c2 1039 chr3L 6027163 6027182 chr3L 6027311 6027330 9 148 2.0 1.5 1.8 3.2 167 chr3L 6027163 intergenic not near genes chr3L 6027246 intergenic not near genes chr3L 6027330 intergenic not near genes chr3L_9_6025001 chr3L_6025001 D20-c2 1040 chr3L 6052645 6052669 chr3L 6052731 6052755 14 86 10.0 12.5 11.2 1.1 110 chr3L 6052645 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052755 exon Jon65Aii + chr3L_14_6050001 chr3L_6050001 D20-c2 1041 chr3L 6159867 6159897 chr3L 6159958 6159988 8 91 3.0 4.0 3.5 1.8 121 chr3L 6159867 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6159988 intergenic not near genes chr3L_8_6155001 chr3L_6155001 D20-c2 1042 chr3L 6220914 6220948 chr3L 6230067 6230101 roo 14 9153 4.5 3.5 4.0 2.8 9187 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230101 intergenic not near genes chr3L_14_6225001 chr3L_6225001 D20-c2 1043 chr3L 6335008 6335033 chr3L 6335479 6335505 297 11 472 7.0 1.5 4.2 2.1 497 chr3L 6335008 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335505 intron CG13300 - chr3L_11_6335001 chr3L_6335001 D20-c2 1044 chr3L 6353375 6353408 chr3L 6353456 6353489 14 80 4.0 3.0 3.5 3.1 114 chr3L 6353375 intergenic not near genes chr3L 6353432 intergenic not near genes chr3L 6353489 intergenic not near genes chr3L_14_6350001 chr3L_6350001 D20-c2 1045 chr3L 6362385 6362403 chr3L 6362463 6362481 5 78 2.0 0.0 1.0 2.5 96 chr3L 6362385 intergenic not near genes chr3L 6362433 intergenic not near genes chr3L 6362481 intergenic not near genes chr3L_5_6360001 chr3L_6360001 D20-c2 1046 chr3L 6372138 6372148 chr3L 6372221 6372234 5 85 11.5 0.0 5.8 0.7 96 chr3L 6372138 intergenic not near genes chr3L 6372186 intergenic not near genes chr3L 6372234 intergenic not near genes chr3L_5_6370001 chr3L_6370001 D20-c2 1047 chr3L 6405669 6405686 chr3L 6432134 6432151 roo 4 26465 3.0 1.5 2.2 1.2 26482 chr3L 6405669 intron CG42747 + chr3L 6418910 intron CG42747 + chr3L 6432151 intron CG42747 + chr3L_4_6415001 chr3L_6415001 D20-c2 1048 chr3L 6573653 6573689 chr3L 6573757 6573793 22 104 1.5 5.5 3.5 4.9 140 chr3L 6573653 intron,intron CG18769 +,jv - chr3L 6573723 intron,intron CG18769 +,jv - chr3L 6573793 intron,intron CG18769 +,jv - chr3L_22_6570001 chr3L_6570001 D20-c2 1049 chr3L 6623488 6623506 chr3L 6623574 6623603 5 95 5.0 2.5 3.8 1.0 115 chr3L 6623488 intergenic not near genes chr3L 6623546 intergenic GluRIA + chr3L 6623603 intergenic GluRIA + chr3L_5_6620001 chr3L_6620001 D20-c2 1050 chr3L 6642869 6642890 chr3L 6642950 6642971 5 81 0.0 0.0 0.0 5.0 102 chr3L 6642869 intergenic CR45239 + chr3L 6642920 intergenic CR45239 + chr3L 6642971 intergenic CR45239 + chr3L_5_6640001 chr3L_6640001 D20-c2 1051 chr3L 6652731 6652752 chr3L 6652826 6652847 6 95 4.5 3.5 4.0 1.2 116 chr3L 6652731 intergenic not near genes chr3L 6652789 intergenic not near genes chr3L 6652847 intergenic not near genes chr3L_6_6650001 chr3L_6650001 D20-c2 1052 chr3L 6660994 6661028 chr3L 6661074 6661108 19 80 7.5 2.5 5.0 3.2 114 chr3L 6660994 intergenic not near genes chr3L 6661051 intergenic not near genes chr3L 6661108 intergenic not near genes chr3L_19_6660001 chr3L_6660001 D20-c2 1053 chr3L 6681341 6681372 chr3L 6681419 6681450 13 78 4.0 5.5 4.8 2.2 109 chr3L 6681341 intergenic not near genes chr3L 6681396 intergenic not near genes chr3L 6681450 intergenic not near genes chr3L_13_6680001 chr3L_6680001 D20-c2 1054 chr3L 6727791 6727815 chr3L 6727889 6727914 6 98 1.0 1.0 1.0 3.0 123 chr3L 6727791 intergenic CR45417 + chr3L 6727852 intergenic CR45417 + chr3L 6727914 intergenic CR45417 + chr3L_6_6725001 chr3L_6725001 D20-c2 1055 chr3L 6798651 6798681 chr3L 6798926 6798956 11 275 2.0 4.0 3.0 2.8 305 chr3L 6798651 intergenic not near genes chr3L 6798804 intergenic not near genes chr3L 6798956 intergenic not near genes chr3L_11_6795001 chr3L_6795001 D20-c2 1056 chr3L 6887526 6887549 chr3L 6895019 6895042 roo 4 7493 3.5 1.0 2.2 1.2 7516 chr3L 6887526 intergenic not near genes chr3L 6891284 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_4_6890001 chr3L_6890001 D20-c2 1057 chr3L 6994886 6994915 chr3L 6995498 6995527 BS 5 612 1.0 1.0 1.0 2.5 641 chr3L 6994886 intergenic bin + chr3L 6995206 intergenic not near genes chr3L 6995527 intergenic not near genes chr3L_5_6995001 chr3L_6995001 D20-c2 1058 chr3L 7033177 7033205 chr3L 7033258 7033286 13 80 2.5 5.5 4.0 2.6 109 chr3L 7033177 intron Mp + chr3L 7033232 intron Mp + chr3L 7033286 intron Mp + chr3L_13_7030001 chr3L_7030001 D20-c2 1059 chr3L 7085168 7085194 chr3L 7085247 7085279 8 84 3.0 4.0 3.5 1.8 111 chr3L 7085168 intergenic not near genes chr3L 7085224 intergenic not near genes chr3L 7085279 intergenic not near genes chr3L_8_7085001 chr3L_7085001 D20-c2 1060 chr3L 7164560 7164565 chr3L 7164642 7164647 4 82 9.0 3.0 6.0 0.6 87 chr3L 7164560 intron Dscam2 - chr3L 7164604 intron Dscam2 - chr3L 7164647 intron Dscam2 - chr3L_4_7160001 chr3L_7160001 D20-c2 1061 chr3L 7174023 7174060 chr3L 7174117 7174142 10 83 3.0 0.0 1.5 4.0 119 chr3L 7174023 intron Dscam2 - chr3L 7174082 intron Dscam2 - chr3L 7174142 intron Dscam2 - chr3L_10_7170001 chr3L_7170001 D20-c2 1062 chr3L 7187410 7187422 chr3L 7187493 7187505 5 83 0.0 0.0 0.0 5.0 95 chr3L 7187410 intron Dscam2 - chr3L 7187458 intron Dscam2 - chr3L 7187505 intron Dscam2 - chr3L_5_7185001 chr3L_7185001 D20-c2 1063 chr3L 7276159 7276172 chr3L 7276237 7276250 4 78 3.5 4.0 3.8 0.8 91 chr3L 7276159 intron unc-13-4A - chr3L 7276204 intron unc-13-4A - chr3L 7276250 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 D20-c2 1064 chr3L 7285455 7285477 chr3L 7285534 7285556 5 79 2.0 3.0 2.5 1.4 101 chr3L 7285455 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285556 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 D20-c2 1065 chr3L 7355718 7355752 chr3L 7363624 7363658 30 7906 36.5 57.0 46.8 0.6 7940 chr3L 7355718 exon CTCF - chr3L 7359688 exon pst - chr3L 7363658 exon Sec63 + chr3L_30_7355001 chr3L_7355001 D20-c2 1066 chr3L 7447947 7447982 chr3L 7448052 7448087 5 105 2.0 4.0 3.0 1.2 140 chr3L 7447947 intron CG42458 + chr3L 7448017 intron CG42458 + chr3L 7448087 exon CG42458 + chr3L_5_7445001 chr3L_7445001 D20-c2 1067 chr3L 7505786 7505789 chr3L 7505876 7505878 4 90 27.0 26.0 26.5 0.1 92 chr3L 7505786 exon CG7548 - chr3L 7505832 exon CG7548 - chr3L 7505878 exon CG7548 - chr3L_4_7505001 chr3L_7505001 D20-c2 1068 chr3L 7508677 7508705 chr3L 7508762 7508790 11 85 2.5 3.0 2.8 2.9 113 chr3L 7508677 intergenic not near genes chr3L 7508734 intergenic not near genes chr3L 7508790 intergenic not near genes chr3L_11_7505001 chr3L_7505001 D20-c2 1069 chr3L 7532911 7532943 chr3L 7532990 7533022 6 79 2.0 2.5 2.2 1.9 111 chr3L 7532911 intron lqf + chr3L 7532966 intron lqf + chr3L 7533022 intron lqf + chr3L_6_7530001 chr3L_7530001 D20-c2 1070 chr3L 7572279 7572313 chr3L 7572367 7572401 12 88 2.0 4.5 3.2 2.9 122 chr3L 7572279 intergenic not near genes chr3L 7572340 intergenic not near genes chr3L 7572401 intergenic not near genes chr3L_12_7570001 chr3L_7570001 D20-c2 1071 chr3L 7591145 7591182 chr3L 7591237 7591274 13 92 1.5 4.5 3.0 3.2 129 chr3L 7591145 intergenic CG7716 - chr3L 7591210 intergenic CG7716 - chr3L 7591274 intergenic CG7716 - chr3L_13_7590001 chr3L_7590001 D20-c2 1072 chr3L 7617695 7617700 chr3L 7617805 7617810 4 110 5.5 0.0 2.8 1.1 115 chr3L 7617695 intron CG33275 + chr3L 7617752 intron CG33275 + chr3L 7617810 intron CG33275 + chr3L_4_7615001 chr3L_7615001 D20-c2 1073 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028207 7.5 26.5 17.0 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 D20-c2 1074 chr3L 7775508 7775527 chr3L 7775609 7775628 7 101 4.0 2.0 3.0 1.8 120 chr3L 7775508 5` UTR Clk - chr3L 7775568 5` UTR Clk - chr3L 7775628 intergenic Clk - chr3L_7_7775001 chr3L_7775001 D20-c2 1075 chr3L 7793711 7793742 chr3L 7800764 7800795 297 11 7053 3.0 4.5 3.8 2.3 7084 chr3L 7793711 intron CG32369 - chr3L 7797253 intron CG32369 - chr3L 7800795 intron CG32369 - chr3L_11_7795001 chr3L_7795001 D20-c2 1076 chr3L 7814704 7814734 chr3L 7814790 7814820 5 86 2.0 4.5 3.2 1.2 116 chr3L 7814704 3` UTR Pdp1 - chr3L 7814762 3` UTR Pdp1 - chr3L 7814820 3` UTR Pdp1 - chr3L_5_7810001 chr3L_7810001 D20-c2 1077 chr3L 7845387 7845401 chr3L 7845471 7845485 5 84 2.5 0.5 1.5 2.0 98 chr3L 7845387 intron Pdp1 - chr3L 7845436 intron Pdp1 - chr3L 7845485 intron Pdp1 - chr3L_5_7845001 chr3L_7845001 D20-c2 1078 chr3L 7865563 7865581 chr3L 7865703 7865722 6 141 2.5 1.0 1.8 2.1 159 chr3L 7865563 intron Pdp1 - chr3L 7865642 intron Pdp1 - chr3L 7865722 intron Pdp1 - chr3L_6_7865001 chr3L_7865001 D20-c2 1079 chr3L 7869664 7869674 chr3L 7869745 7869755 4 81 7.5 11.5 9.5 0.4 91 chr3L 7869664 exon CG32365 + chr3L 7869710 exon CG32365 + chr3L 7869755 exon CG32365 + chr3L_4_7865001 chr3L_7865001 D20-c2 1080 chr3L 7886524 7886543 chr3L 7889043 7889062 Stalker4 7 2519 0.0 3.0 1.5 2.8 2538 chr3L 7886524 intron CG32365 + chr3L 7887793 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_7_7885001 chr3L_7885001 D20-c2 1081 chr3L 7916840 7916848 chr3L 7926012 7926020 roo 4 9172 0.5 3.0 1.8 1.4 9180 chr3L 7916840 3` UTR syd - chr3L 7921430 intron syd - chr3L 7926020 3` UTR syd - chr3L_4_7920001 chr3L_7920001 D20-c2 1082 chr3L 7985360 7985387 chr3L 7987689 7987716 NOF 11 2329 7.5 3.5 5.5 1.7 2356 chr3L 7985360 intron nmo + chr3L 7986538 intron nmo + chr3L 7987716 intron nmo + chr3L_11_7985001 chr3L_7985001 D20-c2 1083 chr3L 8456479 8456487 chr3L 8456573 8456581 4 94 7.0 12.0 9.5 0.4 102 chr3L 8456479 intron Gug + chr3L 8456530 intron Gug + chr3L 8456581 intron Gug + chr3L_4_8455001 chr3L_8455001 D20-c2 1084 chr3L 8481769 8481804 chr3L 8490929 8490964 roo 24 9158 7.5 6.0 6.8 3.1 9195 chr3L 8481769 intron CG43163 - chr3L 8486366 intron CG43163 - chr3L 8490964 intron CG43163 - chr3L_24_8485001 chr3L_8485001 D20-c2 1085 chr3L 8498294 8498330 chr3L 8505762 8505798 blood 14 7468 0.5 3.5 2.0 4.7 7504 chr3L 8498294 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505798 intron CG43163 - chr3L_14_8500001 chr3L_8500001 D20-c2 1086 chr3L 8558670 8558694 chr3L 8558762 8558786 6 92 1.0 3.5 2.2 1.9 116 chr3L 8558670 intron rhea + chr3L 8558728 intron rhea + chr3L 8558786 intron rhea + chr3L_6_8555001 chr3L_8555001 D20-c2 1087 chr3L 8691156 8691192 chr3L 8691239 8691275 10 83 1.5 3.0 2.2 3.1 119 chr3L 8691156 intergenic not near genes chr3L 8691216 intergenic not near genes chr3L 8691275 intergenic not near genes chr3L_10_8690001 chr3L_8690001 D20-c2 1088 chr3L 8782130 8782154 chr3L 8782257 8782281 15 127 3.5 3.5 3.5 3.3 151 chr3L 8782130 intron Fhos + chr3L 8782206 intron Fhos + chr3L 8782281 intron Fhos + chr3L_15_8780001 chr3L_8780001 D20-c2 1089 chr3L 8837381 8837403 chr3L 8837462 8837484 10 79 4.0 8.0 6.0 1.4 103 chr3L 8837381 intron,exon dally +,CG32026 + chr3L 8837432 intron,exon dally +,CG32026 + chr3L 8837484 intron,exon dally +,CG32026 + chr3L_10_8835001 chr3L_8835001 D20-c2 1090 chr3L 8849211 8849236 chr3L 8849292 8849317 7 81 1.5 1.5 1.5 2.8 106 chr3L 8849211 intron dally + chr3L 8849264 intron dally + chr3L 8849317 intron dally + chr3L_7_8845001 chr3L_8845001 D20-c2 1091 chr3L 8899103 8899135 chr3L 8899189 8899221 11 86 0.5 2.5 1.5 4.4 118 chr3L 8899103 intron TrpA1 - chr3L 8899162 intron TrpA1 - chr3L 8899221 intron TrpA1 - chr3L_11_8895001 chr3L_8895001 D20-c2 1092 chr3L 9003944 9003978 chr3L 9004030 9004064 16 86 2.5 2.0 2.2 5.0 120 chr3L 9003944 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004064 intergenic not near genes chr3L_16_9000001 chr3L_9000001 D20-c2 1093 chr3L 9013689 9013692 chr3L 18417066 18417066 8 9403375 32.0 20.0 26.0 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 D20-c2 1094 chr3L 9030429 9030456 chr3L 9030509 9030536 4 80 2.0 0.0 1.0 2.0 107 chr3L 9030429 intergenic not near genes chr3L 9030482 intergenic not near genes chr3L 9030536 intergenic not near genes chr3L_4_9030001 chr3L_9030001 D20-c2 1095 chr3L 9047095 9047107 chr3L 9047183 9047195 4 88 1.5 0.0 0.8 2.2 100 chr3L 9047095 intergenic CG5144 + chr3L 9047145 intergenic CG5144 + chr3L 9047195 intergenic CG5144 + chr3L_4_9045001 chr3L_9045001 D20-c2 1096 chr3L 9076925 9076959 chr3L 9084486 9084520 412 19 7561 6.5 6.5 6.5 2.5 7595 chr3L 9076925 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084520 exon Tequila + chr3L_19_9080001 chr3L_9080001 D20-c2 1097 chr3L 9128203 9128214 chr3L 9128289 9128300 7 86 4.0 1.5 2.8 1.8 97 chr3L 9128203 intron bol - chr3L 9128252 intron bol - chr3L 9128300 intron bol - chr3L_7_9125001 chr3L_9125001 D20-c2 1098 chr3L 9130556 9130581 chr3L 9134318 9134343 412 12 3762 5.5 5.5 5.5 1.8 3787 chr3L 9130556 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_12_9130001 chr3L_9130001 D20-c2 1099 chr3L 9164694 9164730 chr3L 9166162 9166198 hobo 9 1468 3.0 1.5 2.2 2.8 1504 chr3L 9164694 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_9_9165001 chr3L_9165001 D20-c2 1100 chr3L 9219241 9219275 chr3L 9219914 9219948 jockey 21 673 9.0 6.0 7.5 2.5 707 chr3L 9219241 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219948 intergenic not near genes chr3L_21_9215001 chr3L_9215001 D20-c2 1101 chr3L 9254521 9254543 chr3L 9254815 9254837 7 294 2.5 5.0 3.8 1.5 316 chr3L 9254521 intron GluRIB + chr3L 9254679 intron GluRIB + chr3L 9254837 intron GluRIB + chr3L_7_9250001 chr3L_9250001 D20-c2 1102 chr3L 9270614 9270649 chr3L 9278370 9278405 roo 8 7756 1.5 6.0 3.8 1.7 7791 chr3L 9270614 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278405 exon GluRIB + chr3L_8_9270001 chr3L_9270001 D20-c2 1103 chr3L 9279896 9279929 chr3L 9279981 9280015 10 85 3.5 5.0 4.2 1.9 119 chr3L 9279896 intron GluRIB + chr3L 9279956 intron GluRIB + chr3L 9280015 intron GluRIB + chr3L_10_9275001 chr3L_9275001 D20-c2 1104 chr3L 9328395 9328412 chr3L 9328507 9328524 7 112 1.5 6.0 3.8 1.5 129 chr3L 9328395 intergenic not near genes chr3L 9328460 intergenic not near genes chr3L 9328524 intergenic not near genes chr3L_7_9325001 chr3L_9325001 D20-c2 1105 chr3L 9359585 9359622 chr3L 9359677 9359714 8 92 1.5 2.0 1.8 2.9 129 chr3L 9359585 3` UTR CG32039 + chr3L 9359650 3` UTR CG32039 + chr3L 9359714 3` UTR CG32039 + chr3L_8_9355001 chr3L_9355001 D20-c2 1106 chr3L 9526483 9526513 chr3L 9528164 9528194 Doc 9 1681 1.0 0.5 0.8 5.0 1711 chr3L 9526483 intergenic not near genes chr3L 9527338 intergenic not near genes chr3L 9528194 intergenic not near genes chr3L_9_9525001 chr3L_9525001 D20-c2 1107 chr3L 9637853 9637887 chr3L 9637936 9637970 20 83 4.0 2.5 3.2 4.8 117 chr3L 9637853 intron fry - chr3L 9637912 intron fry - chr3L 9637970 intron fry - chr3L_20_9635001 chr3L_9635001 D20-c2 1108 chr3L 9646805 9646843 chr3L 9646904 9646942 17 99 2.5 0.0 1.2 7.7 137 chr3L 9646805 intron,intron fry -,CG33696 + chr3L 9646874 intron,intron fry -,CG33696 + chr3L 9646942 intron,intron fry -,CG33696 + chr3L_17_9645001 chr3L_9645001 D20-c2 1109 chr3L 9660895 9660924 chr3L 9661069 9661098 22 174 5.0 4.0 4.5 4.0 203 chr3L 9660895 intron fry - chr3L 9660996 intron fry - chr3L 9661098 intron fry - chr3L_22_9660001 chr3L_9660001 D20-c2 1110 chr3L 9742042 9742058 chr3L 9742476 9742490 13 435 0.5 0.0 0.2 10.8 448 chr3L 9742042 intron,intron CG42268 -,CR44348 + chr3L 9742266 intron,intron CG42268 -,CR44348 + chr3L 9742490 intron,intron CG42268 -,CR44348 + chr3L_13_9740001 chr3L_9740001 D20-c2 1111 chr3L 9753867 9753898 chr3L 9753954 9753985 9 84 7.0 4.0 5.5 1.4 118 chr3L 9753867 intron CG42268 - chr3L 9753926 intron CG42268 - chr3L 9753985 intron CG42268 - chr3L_9_9750001 chr3L_9750001 D20-c2 1112 chr3L 10003150 10003179 chr3L 10003248 10003277 9 97 0.5 3.5 2.0 3.0 127 chr3L 10003150 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003277 intron dpr6 + chr3L_9_10000001 chr3L_10000001 D20-c2 1113 chr3L 10032551 10032568 chr3L 10032639 10032656 5 88 0.0 2.5 1.2 2.3 105 chr3L 10032551 intron dpr6 + chr3L 10032604 intron dpr6 + chr3L 10032656 intron dpr6 + chr3L_5_10030001 chr3L_10030001 D20-c2 1114 chr3L 10214733 10214827 chr3L 10214821 10214930 8 94 0.0 0.0 0.0 8.0 197 chr3L 10214733 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_8_10210001 chr3L_10210001 D20-c2 1115 chr3L 10222749 10222777 chr3L 10222830 10222858 4 81 1.0 8.5 4.8 0.7 109 chr3L 10222749 intron scramb1 - chr3L 10222804 intron scramb1 - chr3L 10222858 intron scramb1 - chr3L_4_10220001 chr3L_10220001 D20-c2 1116 chr3L 10245639 10245677 chr3L 10245787 10245804 10 145 4.5 3.5 4.0 2.0 165 chr3L 10245639 intergenic not near genes chr3L 10245722 intergenic not near genes chr3L 10245804 intergenic not near genes chr3L_10_10245001 chr3L_10245001 D20-c2 1117 chr3L 10255385 10255407 chr3L 10255484 10255506 6 99 0.0 1.0 0.5 4.0 121 chr3L 10255385 intergenic not near genes chr3L 10255446 intergenic not near genes chr3L 10255506 intergenic not near genes chr3L_6_10255001 chr3L_10255001 D20-c2 1118 chr3L 10298666 10298697 chr3L 10298754 10298785 8 88 0.0 3.5 1.8 2.9 119 chr3L 10298666 intergenic not near genes chr3L 10298726 intergenic not near genes chr3L 10298785 intergenic not near genes chr3L_8_10295001 chr3L_10295001 D20-c2 1119 chr3L 10308737 10308767 chr3L 10308815 10308845 14 77 4.5 2.5 3.5 3.1 108 chr3L 10308737 intergenic not near genes chr3L 10308791 intergenic not near genes chr3L 10308845 intergenic not near genes chr3L_14_10305001 chr3L_10305001 D20-c2 1120 chr3L 10314125 10314157 chr3L 10314212 10314244 5 87 0.5 1.0 0.8 2.8 119 chr3L 10314125 intergenic not near genes chr3L 10314184 intergenic not near genes chr3L 10314244 intergenic not near genes chr3L_5_10310001 chr3L_10310001 D20-c2 1121 chr3L 10314486 10314494 chr3L 10314567 10314575 5 81 2.0 2.5 2.2 1.6 89 chr3L 10314486 intergenic not near genes chr3L 10314530 intergenic not near genes chr3L 10314575 intergenic not near genes chr3L_5_10310001 chr3L_10310001 D20-c2 1122 chr3L 10383223 10383246 chr3L 10383323 10383346 5 100 0.5 4.0 2.2 1.6 123 chr3L 10383223 intergenic not near genes chr3L 10383284 intergenic not near genes chr3L 10383346 intergenic not near genes chr3L_5_10380001 chr3L_10380001 D20-c2 1123 chr3L 10414941 10414974 chr3L 10417314 10417347 Doc 10 2373 4.0 3.0 3.5 2.2 2406 chr3L 10414941 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_10_10415001 chr3L_10415001 D20-c2 1124 chr3L 10417566 10417602 chr3L 10417644 10417680 12 78 5.0 4.0 4.5 2.2 114 chr3L 10417566 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_12_10415001 chr3L_10415001 D20-c2 1125 chr3L 10526634 10526650 chr3L 10526716 10526730 8 82 5.5 5.5 5.5 1.2 96 chr3L 10526634 intron A2bp1 + chr3L 10526682 intron A2bp1 + chr3L 10526730 intron A2bp1 + chr3L_8_10525001 chr3L_10525001 D20-c2 1126 chr3L 10600457 10600464 chr3L 10600540 10600547 6 83 2.5 1.5 2.0 2.0 90 chr3L 10600457 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600547 intergenic not near genes chr3L_6_10600001 chr3L_10600001 D20-c2 1127 chr3L 10621848 10621879 chr3L 10621936 10621967 9 88 1.5 2.5 2.0 3.0 119 chr3L 10621848 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621967 intergenic not near genes chr3L_9_10620001 chr3L_10620001 D20-c2 1128 chr3L 10730107 10730117 chr3L 10730201 10730211 5 94 2.0 2.0 2.0 1.7 104 chr3L 10730107 intergenic not near genes chr3L 10730159 intergenic not near genes chr3L 10730211 intergenic not near genes chr3L_5_10730001 chr3L_10730001 D20-c2 1129 chr3L 10762831 10762862 chr3L 10762916 10762947 9 83 3.5 3.5 3.5 2.0 116 chr3L 10762831 intergenic not near genes chr3L 10762889 intergenic not near genes chr3L 10762947 intergenic not near genes chr3L_9_10760001 chr3L_10760001 D20-c2 1130 chr3L 10942060 10942073 chr3L 10942144 10942156 8 84 8.0 10.0 9.0 0.8 96 chr3L 10942060 intergenic not near genes chr3L 10942108 intergenic not near genes chr3L 10942156 intergenic not near genes chr3L_8_10940001 chr3L_10940001 D20-c2 1131 chr3L 10956448 10956469 chr3L 10956567 10956587 6 119 0.5 2.0 1.2 2.7 139 chr3L 10956448 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956587 intergenic not near genes chr3L_6_10955001 chr3L_10955001 D20-c2 1132 chr3L 10958217 10958240 chr3L 10958299 10958323 5 83 1.5 1.0 1.2 2.3 106 chr3L 10958217 intergenic not near genes chr3L 10958270 intergenic not near genes chr3L 10958323 intergenic not near genes chr3L_5_10955001 chr3L_10955001 D20-c2 1133 chr3L 11000060 11000088 chr3L 11000142 11000170 5 82 10.5 4.5 7.5 0.6 110 chr3L 11000060 intron klu - chr3L 11000115 intron klu - chr3L 11000170 intron klu - chr3L_5_11000001 chr3L_11000001 D20-c2 1134 chr3L 11245088 11245119 chr3L 11245181 11245212 5 93 13.0 9.0 11.0 0.4 124 chr3L 11245088 intergenic not near genes chr3L 11245150 intergenic not near genes chr3L 11245212 intergenic not near genes chr3L_5_11245001 chr3L_11245001 D20-c2 1135 chr3L 11264466 11264493 chr3L 11271419 11271446 17.6 7 6953 3.5 4.5 4.0 1.4 6980 chr3L 11264466 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271446 intergenic not near genes chr3L_7_11265001 chr3L_11265001 D20-c2 1136 chr3L 11290631 11290657 chr3L 11290955 11290981 4 324 5.5 8.0 6.8 0.5 350 chr3L 11290631 intron CG6175 - chr3L 11290806 intron CG6175 - chr3L 11290981 intron CG6175 - chr3L_4_11290001 chr3L_11290001 D20-c2 1137 chr3L 11383962 11383996 chr3L 11384042 11384060 9 75 8.0 9.5 8.8 0.9 98 chr3L 11383962 intron CR42755 - chr3L 11384011 3` UTR CR42755 - chr3L 11384060 3` UTR CR42755 - chr3L_9_11380001 chr3L_11380001 D20-c2 1138 chr3L 11389472 11389484 chr3L 11389925 11389937 5 453 21.5 4.0 12.8 0.4 465 chr3L 11389472 intergenic not near genes chr3L 11389704 intergenic not near genes chr3L 11389937 intergenic not near genes chr3L_5_11385001 chr3L_11385001 D20-c2 1139 chr3L 11435562 11435587 chr3L 11435732 11435757 6 170 7.0 5.0 6.0 0.9 195 chr3L 11435562 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435757 5` UTR CR44548 + chr3L_6_11435001 chr3L_11435001 D20-c2 1140 chr3L 11493172 11493185 chr3L 11493255 11493268 4 83 4.5 7.5 6.0 0.6 96 chr3L 11493172 intron chrb + chr3L 11493220 intron chrb + chr3L 11493268 intron chrb + chr3L_4_11490001 chr3L_11490001 D20-c2 1141 chr3L 11564790 11564806 chr3L 11572416 11572432 412 7 7626 7.0 9.5 8.2 0.8 7642 chr3L 11564790 exon CG33267 + chr3L 11568611 intron CG33267 + chr3L 11572432 exon CG33267 + chr3L_7_11565001 chr3L_11565001 D20-c2 1142 chr3L 11579555 11579580 chr3L 11579662 11579687 6 107 0.5 0.5 0.5 4.0 132 chr3L 11579555 intergenic CG43390 - chr3L 11579621 intergenic CG43390 - chr3L 11579687 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 D20-c2 1143 chr3L 11663110 11663140 chr3L 11663288 11663318 4 178 3.5 1.0 2.2 1.2 208 chr3L 11663110 intron CG32085 - chr3L 11663214 intron CG32085 - chr3L 11663318 intron CG32085 - chr3L_4_11660001 chr3L_11660001 D20-c2 1144 chr3L 11678102 11678125 chr3L 11678190 11678213 9 88 0.5 3.5 2.0 3.0 111 chr3L 11678102 intron CG32085 - chr3L 11678158 intron CG32085 - chr3L 11678213 intron CG32085 - chr3L_9_11675001 chr3L_11675001 D20-c2 1145 chr3L 11723084 11723114 chr3L 11727880 11727910 Doc 5 4796 0.0 3.5 1.8 1.8 4826 chr3L 11723084 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 D20-c2 1146 chr3L 11744011 11744033 chr3L 11744120 11744142 7 109 4.0 0.0 2.0 2.3 131 chr3L 11744011 exon CG6024 - chr3L 11744076 intron CG6024 - chr3L 11744142 intron CG6024 - chr3L_7_11740001 chr3L_11740001 D20-c2 1147 chr3L 7749471 7749471 chr3L 11777678 11777678 5 4028207 7.5 26.5 17.0 0.3 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 D20-c2 1148 chr3L 11777678 11777678 chr3L 12163305 12163305 5 385627 27.5 19.5 23.5 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_5_11970001 chr3L_11970001 D20-c2 1149 chr3L 11826553 11826585 chr3L 11826662 11826694 10 109 3.5 2.0 2.8 2.6 141 chr3L 11826553 intergenic CycA - chr3L 11826624 intergenic CycA - chr3L 11826694 intergenic CycA - chr3L_10_11825001 chr3L_11825001 D20-c2 1150 chr3L 11884150 11884181 chr3L 11884316 11884354 4 168 11.5 8.0 9.8 0.4 204 chr3L 11884150 intron CG44837 - chr3L 11884252 intron CG44837 - chr3L 11884354 intron CG44837 - chr3L_4_11880001 chr3L_11880001 D20-c2 1151 chr3L 11887257 11887289 chr3L 11887355 11887396 9 100 0.0 0.0 0.0 9.0 139 chr3L 11887257 intron CG44837 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887396 intron,3` UTR CG44837 -,CG5897 - chr3L_9_11885001 chr3L_11885001 D20-c2 1152 chr3L 11943497 11943517 chr3L 11943599 11943619 11 102 2.0 3.5 2.8 2.9 122 chr3L 11943497 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_11_11940001 chr3L_11940001 D20-c2 1153 chr3L 11961203 11961221 chr3L 11961302 11961325 17 103 5.5 8.0 6.8 2.2 122 chr3L 11961203 exon prc - chr3L 11961264 exon prc - chr3L 11961325 exon prc - chr3L_17_11960001 chr3L_11960001 D20-c2 1154 chr3L 11961954 11961963 chr3L 11964267 11964276 6 2313 23.5 2.0 12.8 0.4 2322 chr3L 11961954 exon prc - chr3L 11963115 exon prc - chr3L 11964276 exon prc - chr3L_6_11960001 chr3L_11960001 D20-c2 1155 chr3L 12013911 12013932 chr3L 12014003 12014023 5 92 6.5 3.5 5.0 0.8 112 chr3L 12013911 intron rols - chr3L 12013967 intron rols - chr3L 12014023 intron rols - chr3L_5_12010001 chr3L_12010001 D20-c2 1156 chr3L 12089080 12089112 chr3L 12089161 12089193 9 81 5.0 2.5 3.8 1.9 113 chr3L 12089080 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089193 3` UTR CG17154 + chr3L_9_12085001 chr3L_12085001 D20-c2 1157 chr3L 12223874 12223905 chr3L 12223952 12223983 13 78 1.5 2.5 2.0 4.3 109 chr3L 12223874 intron app - chr3L 12223928 intron app - chr3L 12223983 intron app - chr3L_13_12220001 chr3L_12220001 D20-c2 1158 chr3L 12261191 12261206 chr3L 12261294 12261297 6 101 6.0 5.0 5.5 0.9 106 chr3L 12261191 intron app - chr3L 12261244 intron app - chr3L 12261297 intron app - chr3L_6_12260001 chr3L_12260001 D20-c2 1159 chr3L 12356935 12356951 chr3L 12357279 12357295 4 344 18.0 6.5 12.2 0.3 360 chr3L 12356935 intergenic not near genes chr3L 12357115 intergenic not near genes chr3L 12357295 intergenic not near genes chr3L_4_12355001 chr3L_12355001 D20-c2 1160 chr3L 12412728 12412764 chr3L 12412814 12412850 10 86 3.5 3.0 3.2 2.4 122 chr3L 12412728 intron CG32103 - chr3L 12412789 intron CG32103 - chr3L 12412850 intron CG32103 - chr3L_10_12410001 chr3L_12410001 D20-c2 1161 chr3L 12446269 12446300 chr3L 12446348 12446361 15 76 3.5 3.5 3.5 3.3 92 chr3L 12446269 intergenic not near genes chr3L 12446315 intergenic not near genes chr3L 12446361 intergenic not near genes chr3L_15_12445001 chr3L_12445001 D20-c2 1162 chr3L 12539196 12539209 chr3L 12539281 12539294 4 85 0.5 2.5 1.5 1.6 98 chr3L 12539196 intron sowah - chr3L 12539245 intron sowah - chr3L 12539294 intron sowah - chr3L_4_12535001 chr3L_12535001 D20-c2 1163 chr3L 12620981 12620984 chr3L 12621080 12621083 6 99 8.5 11.5 10.0 0.5 102 chr3L 12620981 3` UTR caup + chr3L 12621032 3` UTR caup + chr3L 12621083 3` UTR caup + chr3L_6_12620001 chr3L_12620001 D20-c2 1164 chr3L 12631077 12631108 chr3L 12631161 12631192 7 84 2.5 1.0 1.8 2.5 115 chr3L 12631077 intron CR32111 + chr3L 12631134 intron CR32111 + chr3L 12631192 intron CR32111 + chr3L_7_12630001 chr3L_12630001 D20-c2 1165 chr3L 12631896 12631923 chr3L 12632107 12632134 8 211 0.5 2.0 1.2 3.6 238 chr3L 12631896 intron CR32111 + chr3L 12632015 intron CR32111 + chr3L 12632134 intron CR32111 + chr3L_8_12630001 chr3L_12630001 D20-c2 1166 chr3L 12647948 12647978 chr3L 12648025 12648055 12 76 3.0 5.5 4.2 2.3 107 chr3L 12647948 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648055 5` UTR CR32111 + chr3L_12_12645001 chr3L_12645001 D20-c2 1167 chr3L 12666929 12666948 chr3L 12667042 12667061 7 113 1.5 3.5 2.5 2.0 132 chr3L 12666929 intergenic not near genes chr3L 12666995 intergenic not near genes chr3L 12667061 intergenic not near genes chr3L_7_12665001 chr3L_12665001 D20-c2 1168 chr3L 12801977 12802008 chr3L 12802054 12802085 6 77 1.5 2.0 1.8 2.1 108 chr3L 12801977 intron Atg1 - chr3L 12802031 intron Atg1 - chr3L 12802085 intron Atg1 - chr3L_6_12800001 chr3L_12800001 D20-c2 1169 chr3L 12829734 12829750 chr3L 12830541 12830557 5 807 10.5 0.5 5.5 0.8 823 chr3L 12829734 intron CG10960 - chr3L 12830146 intron CG10960 - chr3L 12830557 intron CG10960 - chr3L_5_12830001 chr3L_12830001 D20-c2 1170 chr3L 12869552 12869568 chr3L 12869646 12869662 8 93 4.5 5.5 5.0 1.3 110 chr3L 12869552 intergenic not near genes chr3L 12869607 intergenic not near genes chr3L 12869662 intergenic not near genes chr3L_8_12865001 chr3L_12865001 D20-c2 1171 chr3L 12874930 12874963 chr3L 12877223 12877256 jockey 5 2293 0.0 4.5 2.2 1.6 2326 chr3L 12874930 intergenic not near genes chr3L 12876093 intergenic not near genes chr3L 12877256 intergenic not near genes chr3L_5_12875001 chr3L_12875001 D20-c2 1172 chr3L 12894801 12894818 chr3L 12894879 12894897 6 79 7.0 8.0 7.5 0.7 96 chr3L 12894801 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 D20-c2 1173 chr3L 12919274 12919304 chr3L 12924747 12924778 Rt1c 13 5473 4.5 5.0 4.8 2.2 5504 chr3L 12919274 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_13_12920001 chr3L_12920001 D20-c2 1174 chr3L 12957787 12957818 chr3L 12962270 12962301 copia 5 4483 4.5 3.0 3.8 1.0 4514 chr3L 12957787 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_5_12960001 chr3L_12960001 D20-c2 1175 chr3L 12966130 12966141 chr3L 12966220 12966231 4 90 7.5 2.0 4.8 0.7 101 chr3L 12966130 intron Or69a - chr3L 12966180 intron Or69a - chr3L 12966231 intron Or69a - chr3L_4_12965001 chr3L_12965001 D20-c2 1176 chr3L 12978518 12978780 chr3L 12978601 12978860 10 82 2.0 1.0 1.5 4.0 342 chr3L 12978518 intergenic not near genes chr3L 12978689 intergenic not near genes chr3L 12978860 intergenic not near genes chr3L_10_12975001 chr3L_12975001 D20-c2 1177 chr3L 12980520 12980541 chr3L 12980609 12980630 7 89 3.0 0.0 1.5 2.8 110 chr3L 12980520 intergenic not near genes chr3L 12980575 intergenic not near genes chr3L 12980630 intergenic not near genes chr3L_7_12980001 chr3L_12980001 D20-c2 1178 chr3L 13069558 13069578 chr3L 13069638 13069658 5 80 2.0 3.5 2.8 1.3 100 chr3L 13069558 intergenic not near genes chr3L 13069608 intergenic not near genes chr3L 13069658 intergenic not near genes chr3L_5_13065001 chr3L_13065001 D20-c2 1179 chr3L 13076962 13076990 chr3L 13077174 13077202 6 212 0.0 4.0 2.0 2.0 240 chr3L 13076962 intergenic not near genes chr3L 13077082 intergenic not near genes chr3L 13077202 intergenic not near genes chr3L_6_13075001 chr3L_13075001 D20-c2 1180 chr3L 13134520 13134528 chr3L 13134607 13134615 8 87 3.0 3.5 3.2 1.9 95 chr3L 13134520 intergenic not near genes chr3L 13134568 intergenic not near genes chr3L 13134615 intergenic not near genes chr3L_8_13130001 chr3L_13130001 D20-c2 1181 chr3L 13147376 13147401 chr3L 13147454 13147479 7 78 0.0 2.0 1.0 3.5 103 chr3L 13147376 intergenic not near genes chr3L 13147428 intergenic not near genes chr3L 13147479 intergenic not near genes chr3L_7_13145001 chr3L_13145001 D20-c2 1182 chr3L 13206240 13206262 chr3L 13206323 13206345 9 83 4.0 5.5 4.8 1.6 105 chr3L 13206240 intergenic not near genes chr3L 13206292 intergenic not near genes chr3L 13206345 intergenic not near genes chr3L_9_13205001 chr3L_13205001 D20-c2 1183 chr3L 13235750 13235769 chr3L 13235835 13235854 9 83 3.0 2.0 2.5 2.6 104 chr3L 13235750 intron caps + chr3L 13235802 intron caps + chr3L 13235854 intron caps + chr3L_9_13235001 chr3L_13235001 D20-c2 1184 chr3L 13296524 13296531 chr3L 13296613 13296623 5 91 6.0 4.0 5.0 0.8 99 chr3L 13296524 intergenic Sfp70A4 -,CR45253 + chr3L 13296574 3` UTR Sfp70A4 - chr3L 13296623 3` UTR Sfp70A4 - chr3L_5_13295001 chr3L_13295001 D20-c2 1185 chr3L 13301252 13301270 chr3L 13301335 13301353 9 83 0.0 0.0 0.0 9.0 101 chr3L 13301252 intergenic SP + chr3L 13301302 intergenic SP + chr3L 13301353 intergenic SP + chr3L_9_13300001 chr3L_13300001 D20-c2 1186 chr3L 13320605 13320639 chr3L 13320697 13320731 9 92 4.0 4.0 4.0 1.8 126 chr3L 13320605 intergenic not near genes chr3L 13320668 intergenic not near genes chr3L 13320731 intergenic not near genes chr3L_9_13320001 chr3L_13320001 D20-c2 1187 chr3L 13338283 13338317 chr3L 13338380 13338414 4 97 2.0 2.5 2.2 1.2 131 chr3L 13338283 intergenic not near genes chr3L 13338348 intergenic not near genes chr3L 13338414 intergenic not near genes chr3L_4_13335001 chr3L_13335001 D20-c2 1188 chr3L 13372950 13372968 chr3L 13373039 13373057 5 89 0.5 4.0 2.2 1.6 107 chr3L 13372950 intergenic not near genes chr3L 13373004 intergenic not near genes chr3L 13373057 intergenic not near genes chr3L_5_13370001 chr3L_13370001 D20-c2 1189 chr3L 13400524 13400546 chr3L 13400601 13400619 9 76 3.0 0.5 1.8 3.2 95 chr3L 13400524 intron sens - chr3L 13400572 intron sens - chr3L 13400619 intron sens - chr3L_9_13400001 chr3L_13400001 D20-c2 1190 chr3L 13452668 13452685 chr3L 13452757 13452774 6 89 1.5 3.0 2.2 1.9 106 chr3L 13452668 intron CG10738 + chr3L 13452721 intron CG10738 + chr3L 13452774 intron CG10738 + chr3L_6_13450001 chr3L_13450001 D20-c2 1191 chr3L 13525158 13525185 chr3L 13532955 13532982 roo 9 7797 1.5 2.5 2.0 3.0 7824 chr3L 13525158 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532982 intergenic not near genes chr3L_9_13525001 chr3L_13525001 D20-c2 1192 chr3L 13598216 13598226 chr3L 13598291 13598304 6 77 7.5 0.5 4.0 1.2 88 chr3L 13598216 intron bru-3 - chr3L 13598260 intron bru-3 - chr3L 13598304 intron bru-3 - chr3L_6_13595001 chr3L_13595001 D20-c2 1193 chr3L 13692586 13692618 chr3L 13692663 13692696 5 77 2.0 3.0 2.5 1.4 110 chr3L 13692586 intron bru-3 - chr3L 13692641 intron bru-3 - chr3L 13692696 intron bru-3 - chr3L_5_13690001 chr3L_13690001 D20-c2 1194 chr3L 13804545 13804574 chr3L 13822832 13822861 roo 9 18287 3.5 3.5 3.5 2.0 18316 chr3L 13804545 intergenic not near genes chr3L 13813703 intergenic not near genes chr3L 13822861 intergenic not near genes chr3L_9_13810001 chr3L_13810001 D20-c2 1195 chr3L 13828692 13828720 chr3L 13828769 13828797 13 77 0.0 2.5 1.2 5.9 105 chr3L 13828692 intergenic not near genes chr3L 13828744 intergenic not near genes chr3L 13828797 intergenic not near genes chr3L_13_13825001 chr3L_13825001 D20-c2 1196 chr3L 13833763 13833780 chr3L 13833901 13833918 6 138 0.5 0.5 0.5 4.0 155 chr3L 13833763 intergenic not near genes chr3L 13833840 intergenic not near genes chr3L 13833918 intergenic not near genes chr3L_6_13830001 chr3L_13830001 D20-c2 1197 chr3L 13868098 13868131 chr3L 13868235 13868268 7 137 0.0 1.0 0.5 4.7 170 chr3L 13868098 3` UTR dysc - chr3L 13868183 3` UTR dysc - chr3L 13868268 3` UTR dysc - chr3L_7_13865001 chr3L_13865001 D20-c2 1198 chr3L 14004442 14004463 chr3L 14004522 14004543 13 80 6.0 1.5 3.8 2.7 101 chr3L 14004442 intron upSET + chr3L 14004492 intron upSET + chr3L 14004543 intron upSET + chr3L_13_14000001 chr3L_14000001 D20-c2 1199 chr3L 14036672 14036703 chr3L 14036766 14036797 14 94 3.0 2.0 2.5 4.0 125 chr3L 14036672 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036734 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036797 3` UTR pncr014:3L - chr3L_14_14035001 chr3L_14035001 D20-c2 1200 chr3L 14234842 14234854 chr3L 14234940 14234952 4 98 3.5 4.5 4.0 0.8 110 chr3L 14234842 intergenic CG34244 -,CG7924 + chr3L 14234897 intergenic CG34244 -,CG7924 + chr3L 14234952 intergenic CG34244 -,CG7924 + chr3L_4_14230001 chr3L_14230001 D20-c2 1201 chr3L 14245566 14245591 chr3L 14245661 14245686 1360 7 95 6.0 2.5 4.2 1.3 120 chr3L 14245566 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 D20-c2 1202 chr3L 14282590 14282607 chr3L 14282671 14282688 12 81 6.5 10.0 8.2 1.3 98 chr3L 14282590 intron fz + chr3L 14282639 intron fz + chr3L 14282688 intron fz + chr3L_12_14280001 chr3L_14280001 D20-c2 1203 chr3L 14287309 14287345 chr3L 14287401 14287437 9 92 2.5 3.5 3.0 2.2 128 chr3L 14287309 intron fz + chr3L 14287373 intron fz + chr3L 14287437 intron fz + chr3L_9_14285001 chr3L_14285001 D20-c2 1204 chr3L 14295988 14296008 chr3L 14296466 14296495 roo 12 486 7.0 6.5 6.8 1.5 507 chr3L 14295988 intron fz + chr3L 14296242 intron fz + chr3L 14296495 intron fz + chr3L_12_14295001 chr3L_14295001 D20-c2 1205 chr3L 14312029 14312036 chr3L 14316843 14316851 X-element 4 4815 5.0 2.5 3.8 0.8 4822 chr3L 14312029 exon fz + chr3L 14314440 intron fz + chr3L 14316851 intron fz + chr3L_4_14310001 chr3L_14310001 D20-c2 1206 chr3L 14331465 14331485 chr3L 14331549 14331569 6 84 2.0 1.0 1.5 2.4 104 chr3L 14331465 intron fz + chr3L 14331517 intron fz + chr3L 14331569 intron fz + chr3L_6_14330001 chr3L_14330001 D20-c2 1207 chr3L 14338303 14338328 chr3L 14338400 14338424 10 97 2.0 2.0 2.0 3.3 121 chr3L 14338303 intron fz + chr3L 14338364 intron fz + chr3L 14338424 intron fz + chr3L_10_14335001 chr3L_14335001 D20-c2 1208 chr3L 14429438 14429469 chr3L 14429515 14429546 11 77 2.5 2.5 2.5 3.1 108 chr3L 14429438 intron bbg - chr3L 14429492 intron bbg - chr3L 14429546 intron bbg - chr3L_11_14425001 chr3L_14425001 D20-c2 1209 chr3L 14437880 14437913 chr3L 14437975 14438008 9 95 4.0 1.5 2.8 2.4 128 chr3L 14437880 intron bbg - chr3L 14437944 intron bbg - chr3L 14438008 intron bbg - chr3L_9_14435001 chr3L_14435001 D20-c2 1210 chr3L 14462885 14462901 chr3L 14462974 14462990 4 89 0.0 2.0 1.0 2.0 105 chr3L 14462885 intron bbg - chr3L 14462938 intron bbg - chr3L 14462990 intron bbg - chr3L_4_14460001 chr3L_14460001 D20-c2 1211 chr3L 14468446 14468475 chr3L 14473653 14473682 copia 14 5207 2.5 3.5 3.0 3.5 5236 chr3L 14468446 intron bbg - chr3L 14471064 intron bbg - chr3L 14473682 intron bbg - chr3L_14_14470001 chr3L_14470001 D20-c2 1212 chr3L 14565742 14565778 chr3L 14565834 14565870 8 92 1.5 1.5 1.5 3.2 128 chr3L 14565742 intergenic not near genes chr3L 14565806 intergenic not near genes chr3L 14565870 intergenic not near genes chr3L_8_14565001 chr3L_14565001 D20-c2 1213 chr3L 14591073 14591098 chr3L 14591155 14591179 11 82 4.5 3.5 4.0 2.2 106 chr3L 14591073 intron HGTX - chr3L 14591126 intron HGTX - chr3L 14591179 intron HGTX - chr3L_11_14590001 chr3L_14590001 D20-c2 1214 chr3L 14596126 14596140 chr3L 14596207 14596221 5 81 0.0 2.5 1.2 2.3 95 chr3L 14596126 intron HGTX - chr3L 14596174 intron HGTX - chr3L 14596221 intron HGTX - chr3L_5_14595001 chr3L_14595001 D20-c2 1215 chr3L 14618404 14618423 chr3L 14618620 14618639 4 216 2.5 1.0 1.8 1.4 235 chr3L 14618404 intron shd + chr3L 14618522 intron shd + chr3L 14618639 intron shd + chr3L_4_14615001 chr3L_14615001 D20-c2 1216 chr3L 14721181 14721208 chr3L 14723025 14723052 Rt1c 11 1843 7.0 6.0 6.5 1.5 1871 chr3L 14721181 intron ome + chr3L 14722116 intron ome + chr3L 14723052 intron ome + chr3L_11_14720001 chr3L_14720001 D20-c2 1217 chr3L 14729514 14729544 chr3L 14729628 14729658 9 114 1.5 0.0 0.8 5.0 144 chr3L 14729514 intron ome + chr3L 14729586 intron ome + chr3L 14729658 intron ome + chr3L_9_14725001 chr3L_14725001 D20-c2 1218 chr3L 14731316 14731350 chr3L 14731735 14731769 19 419 2.0 2.5 2.2 5.9 453 chr3L 14731316 intron ome + chr3L 14731542 intron ome + chr3L 14731769 intron ome + chr3L_19_14730001 chr3L_14730001 D20-c2 1219 chr3L 14731785 14731819 chr3L 14732288 14732322 12 501 4.0 2.5 3.2 2.9 537 chr3L 14731785 intron ome + chr3L 14732054 intron ome + chr3L 14732322 intron ome + chr3L_12_14730001 chr3L_14730001 D20-c2 1220 chr3L 14861802 14861823 chr3L 14861883 14861904 10 80 1.0 1.0 1.0 5.0 102 chr3L 14861802 intron CG17839 + chr3L 14861853 intron CG17839 + chr3L 14861904 intron CG17839 + chr3L_10_14860001 chr3L_14860001 D20-c2 1221 chr3L 14921073 14921107 chr3L 14921172 14921199 4 94 2.0 0.0 1.0 2.0 126 chr3L 14921073 intron DCX-EMAP + chr3L 14921136 intron DCX-EMAP + chr3L 14921199 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 D20-c2 1222 chr3L 14922103 14922117 chr3L 14922212 14922226 7 109 6.5 1.0 3.8 1.5 123 chr3L 14922103 intron DCX-EMAP + chr3L 14922164 intron DCX-EMAP + chr3L 14922226 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 D20-c2 1223 chr3L 14962263 14962286 chr3L 14962564 14962588 6 301 2.5 5.0 3.8 1.2 325 chr3L 14962263 intergenic not near genes chr3L 14962426 intergenic not near genes chr3L 14962588 intergenic not near genes chr3L_6_14960001 chr3L_14960001 D20-c2 1224 chr3L 15069790 15069814 chr3L 15069931 15069934 26 143 17.0 21.0 19.0 1.3 144 chr3L 15069790 exon cp309 - chr3L 15069862 intron cp309 - chr3L 15069934 exon cp309 - chr3L_26_15065001 chr3L_15065001 D20-c2 1225 chr3L 15085054 15085081 chr3L 15086221 15086248 1360 7 1165 3.5 3.0 3.2 1.7 1194 chr3L 15085054 intron cp309 - chr3L 15085651 intron cp309 - chr3L 15086248 intron cp309 - chr3L_7_15085001 chr3L_15085001 D20-c2 1226 chr3L 15151217 15151241 chr3L 15151402 15151426 8 185 1.0 2.5 1.8 2.9 209 chr3L 15151217 intron FucTA + chr3L 15151322 intron FucTA + chr3L 15151426 intron FucTA + chr3L_8_15150001 chr3L_15150001 D20-c2 1227 chr3L 15165032 15165047 chr3L 15165132 15165147 4 100 0.0 0.5 0.2 3.3 115 chr3L 15165032 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165147 intergenic not near genes chr3L_4_15165001 chr3L_15165001 D20-c2 1228 chr3L 3277031 3277036 chr3L 15196922 15196927 4 11919891 2.0 5.5 3.8 0.8 11919896 chr3L 3277031 intergenic not near genes chr3L 9236979 intergenic CG4483 - chr3L 15196927 intergenic not near genes chr3L_4_9235001 chr3L_9235001 D20-c2 1229 chr3L 15219747 15219773 chr3L 15219830 15219856 4 83 1.0 4.0 2.5 1.1 109 chr3L 15219747 intergenic not near genes chr3L 15219802 intergenic not near genes chr3L 15219856 intergenic not near genes chr3L_4_15215001 chr3L_15215001 D20-c2 1230 chr3L 15257431 15257443 chr3L 15257645 15257657 6 214 2.0 1.5 1.8 2.1 226 chr3L 15257431 intergenic not near genes chr3L 15257544 intergenic not near genes chr3L 15257657 intergenic not near genes chr3L_6_15255001 chr3L_15255001 D20-c2 1231 chr3L 15295765 15295794 chr3L 15298609 15298638 gypsy5 8 2844 3.5 2.0 2.8 2.1 2873 chr3L 15295765 intergenic not near genes chr3L 15297202 intergenic not near genes chr3L 15298638 intergenic Best4 + chr3L_8_15295001 chr3L_15295001 D20-c2 1232 chr3L 15384959 15384989 chr3L 15385088 15385117 11 129 2.0 5.0 3.5 2.4 158 chr3L 15384959 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385117 intergenic not near genes chr3L_11_15385001 chr3L_15385001 D20-c2 1233 chr3L 15436087 15436124 chr3L 15436203 15436240 10 116 1.5 2.5 2.0 3.3 153 chr3L 15436087 intergenic not near genes chr3L 15436164 intergenic not near genes chr3L 15436240 intergenic not near genes chr3L_10_15435001 chr3L_15435001 D20-c2 1234 chr3L 15443586 15443615 chr3L 15443663 15443692 4 77 2.0 0.5 1.2 1.8 106 chr3L 15443586 intergenic not near genes chr3L 15443639 intergenic not near genes chr3L 15443692 intergenic not near genes chr3L_4_15440001 chr3L_15440001 D20-c2 1235 chr3L 15466037 15466136 chr3L 15466120 15466233 12 92 0.0 0.0 0.0 12.0 196 chr3L 15466037 intergenic not near genes chr3L 15466135 intergenic not near genes chr3L 15466233 intergenic not near genes chr3L_12_15465001 chr3L_15465001 D20-c2 1236 chr3L 15541614 15541634 chr3L 15541706 15541726 9 92 4.5 1.0 2.8 2.4 112 chr3L 15541614 intron CrebA + chr3L 15541670 intron CrebA + chr3L 15541726 intron CrebA + chr3L_9_15540001 chr3L_15540001 D20-c2 1237 chr3L 15554923 15554952 chr3L 15556711 15556740 S-element 13 1788 2.0 4.0 3.0 3.2 1817 chr3L 15554923 intron AGO2 + chr3L 15555832 intron AGO2 + chr3L 15556740 intron AGO2 + chr3L_13_15555001 chr3L_15555001 D20-c2 1238 chr3L 15591628 15591649 chr3L 15591784 15591805 10 156 3.0 3.0 3.0 2.5 177 chr3L 15591628 intron RhoGAP71E + chr3L 15591716 intron RhoGAP71E + chr3L 15591805 intron RhoGAP71E + chr3L_10_15590001 chr3L_15590001 D20-c2 1239 chr3L 15633182 15633216 chr3L 15633263 15633297 6 81 1.5 0.0 0.8 3.3 115 chr3L 15633182 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633297 intron comm3 - chr3L_6_15630001 chr3L_15630001 D20-c2 1240 chr3L 15679390 15679415 chr3L 15679551 15679576 4 161 1.0 2.0 1.5 1.6 186 chr3L 15679390 intergenic CG7304 + chr3L 15679483 intergenic CG7304 + chr3L 15679576 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 D20-c2 1241 chr3L 15742961 15742990 chr3L 15743123 15743151 9 162 4.5 0.0 2.2 2.8 190 chr3L 15742961 intergenic not near genes chr3L 15743056 intergenic not near genes chr3L 15743151 intergenic not near genes chr3L_9_15740001 chr3L_15740001 D20-c2 1242 chr3L 15769414 15769443 chr3L 15769496 15769525 9 81 2.5 4.5 3.5 2.0 111 chr3L 15769414 intergenic not near genes chr3L 15769470 intergenic not near genes chr3L 15769525 intergenic not near genes chr3L_9_15765001 chr3L_15765001 D20-c2 1243 chr3L 15883199 15883222 chr3L 15883491 15883516 11 294 3.0 1.5 2.2 3.4 317 chr3L 15883199 intron pHCl - chr3L 15883358 intron pHCl - chr3L 15883516 intron pHCl - chr3L_11_15880001 chr3L_15880001 D20-c2 1244 chr3L 15887279 15887299 chr3L 15887356 15887376 7 74 1.0 2.0 1.5 2.8 97 chr3L 15887279 intron pHCl - chr3L 15887328 intron pHCl - chr3L 15887376 intron pHCl - chr3L_7_15885001 chr3L_15885001 D20-c2 1245 chr3L 15889063 15889096 chr3L 15889262 15889295 8 196 1.0 3.0 2.0 2.7 232 chr3L 15889063 intron pHCl - chr3L 15889179 intron pHCl - chr3L 15889295 intron pHCl - chr3L_8_15885001 chr3L_15885001 D20-c2 1246 chr3L 15897059 15897091 chr3L 15897181 15897213 18 119 7.0 2.5 4.8 3.1 154 chr3L 15897059 intron pHCl - chr3L 15897136 intron pHCl - chr3L 15897213 intron pHCl - chr3L_18_15895001 chr3L_15895001 D20-c2 1247 chr3L 15899221 15899261 chr3L 15899789 15899807 jockey 9 565 2.0 4.5 3.2 2.1 586 chr3L 15899221 intergenic pHCl - chr3L 15899514 intergenic pHCl - chr3L 15899807 intergenic sff - chr3L_9_15895001 chr3L_15895001 D20-c2 1248 chr3L 15929220 15929229 chr3L 15938368 15938377 roo 4 9148 0.0 6.0 3.0 1.0 9157 chr3L 15929220 intron Pka-C3 - chr3L 15933798 intron Pka-C3 - chr3L 15938377 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 D20-c2 1249 chr3L 15939848 15939873 chr3L 15939925 15939950 6 77 2.0 4.5 3.2 1.4 102 chr3L 15939848 intron Pka-C3 - chr3L 15939899 intron Pka-C3 - chr3L 15939950 intron Pka-C3 - chr3L_6_15935001 chr3L_15935001 D20-c2 1250 chr3L 15968220 15968245 chr3L 15968304 15968317 9 82 6.5 2.5 4.5 1.6 97 chr3L 15968220 5` UTR CG10516 + chr3L 15968268 5` UTR CG10516 + chr3L 15968317 5` UTR CG10516 + chr3L_9_15965001 chr3L_15965001 D20-c2 1251 chr3L 16027240 16027264 chr3L 16027329 16027352 5 89 2.0 2.5 2.2 1.6 112 chr3L 16027240 intron Notum + chr3L 16027296 intron Notum + chr3L 16027352 intron Notum + chr3L_5_16025001 chr3L_16025001 D20-c2 1252 chr3L 16040393 16040411 chr3L 16040488 16040506 6 95 1.5 3.0 2.2 1.9 113 chr3L 16040393 intron th - chr3L 16040450 intron th - chr3L 16040506 intron th - chr3L_6_16040001 chr3L_16040001 D20-c2 1253 chr3L 16162594 16162628 chr3L 16162679 16162713 11 84 2.0 0.5 1.2 5.0 119 chr3L 16162594 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162713 intron CG5151 - chr3L_11_16160001 chr3L_16160001 D20-c2 1254 chr3L 16184111 16184139 chr3L 16188931 16188959 X-element 10 4820 2.0 5.0 3.5 2.2 4848 chr3L 16184111 intergenic not near genes chr3L 16186535 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_10_16185001 chr3L_16185001 D20-c2 1255 chr3L 16212819 16212843 chr3L 16212911 16212935 7 92 4.0 0.0 2.0 2.3 116 chr3L 16212819 intergenic CG13073 - chr3L 16212877 intergenic CG13073 - chr3L 16212935 intergenic CG13073 - chr3L_7_16210001 chr3L_16210001 D20-c2 1256 chr3L 16340262 16340289 chr3L 16340387 16340414 9 125 3.5 4.0 3.8 1.9 152 chr3L 16340262 intron CG4998 + chr3L 16340338 intron CG4998 + chr3L 16340414 intron CG4998 + chr3L_9_16340001 chr3L_16340001 D20-c2 1257 chr3L 16366772 16366797 chr3L 16366911 16366941 10 144 6.0 6.0 6.0 1.4 169 chr3L 16366772 exon Cpr72Ec - chr3L 16366856 exon Cpr72Ec - chr3L 16366941 exon Cpr72Ec - chr3L_10_16365001 chr3L_16365001 D20-c2 1258 chr3L 16443846 16443876 chr3L 16446187 16446216 Doc 11 2341 2.5 1.0 1.8 3.9 2370 chr3L 16443846 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446216 intron,intron CG33158 +,dsx-c73A - chr3L_11_16445001 chr3L_16445001 D20-c2 1259 chr3L 16465797 16465813 chr3L 16465933 16465949 5 136 9.0 4.0 6.5 0.7 152 chr3L 16465797 intron CG33158 + chr3L 16465873 intron CG33158 + chr3L 16465949 intron CG33158 + chr3L_5_16465001 chr3L_16465001 D20-c2 1260 chr3L 16485617 16485637 chr3L 16485706 16485726 9 89 10.5 10.5 10.5 0.8 109 chr3L 16485617 exon CG33158 + chr3L 16485672 intron CG33158 + chr3L 16485726 intron CG33158 + chr3L_9_16485001 chr3L_16485001 D20-c2 1261 chr3L 16493973 16494012 chr3L 16494491 16494530 jockey 19 517 3.0 3.5 3.2 4.5 557 chr3L 16493973 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494530 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_19_16490001 chr3L_16490001 D20-c2 1262 chr3L 16514548 16514562 chr3L 16514670 16514684 4 122 5.0 4.5 4.8 0.7 136 chr3L 16514548 intron CG43373 - chr3L 16514616 intron CG43373 - chr3L 16514684 intron CG43373 - chr3L_4_16510001 chr3L_16510001 D20-c2 1263 chr3L 16533570 16533585 chr3L 16533682 16533697 9 112 1.0 3.0 2.0 3.0 127 chr3L 16533570 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533697 intron CG43373 - chr3L_9_16530001 chr3L_16530001 D20-c2 1264 chr3L 16563236 16563249 chr3L 16563318 16563331 5 82 6.5 6.5 6.5 0.7 95 chr3L 16563236 intergenic Mipp1 - chr3L 16563284 intergenic Mipp1 - chr3L 16563331 intergenic Mipp1 - chr3L_5_16560001 chr3L_16560001 D20-c2 1265 chr3L 16581765 16581792 chr3L 16582130 16582157 7 365 12.5 14.5 13.5 0.5 392 chr3L 16581765 5` UTR CR43727 + chr3L 16581961 5` UTR CR43727 + chr3L 16582157 5` UTR CR43727 + chr3L_7_16580001 chr3L_16580001 D20-c2 1266 chr3L 16632238 16632261 chr3L 16632416 16632448 11 186 4.0 0.0 2.0 3.7 210 chr3L 16632238 intron Abl - chr3L 16632343 intron Abl - chr3L 16632448 intron Abl - chr3L_11_16630001 chr3L_16630001 D20-c2 1267 chr3L 16779659 16779685 chr3L 16779745 16779771 7 86 6.0 4.0 5.0 1.2 112 chr3L 16779659 5` UTR CG13025 - chr3L 16779715 5` UTR CG13025 - chr3L 16779771 intergenic CG13025 -,CG9705 + chr3L_7_16775001 chr3L_16775001 D20-c2 1268 chr3L 16808042 16808071 chr3L 16808119 16808148 5 77 4.0 4.5 4.2 1.0 106 chr3L 16808042 intron nudC + chr3L 16808095 intron nudC + chr3L 16808148 intron nudC + chr3L_5_16805001 chr3L_16805001 D20-c2 1269 chr3L 16817875 16817909 chr3L 16818015 16818050 13 141 3.0 3.5 3.2 3.1 175 chr3L 16817875 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818050 intron,intron nudC +,CG13024 - chr3L_13_16815001 chr3L_16815001 D20-c2 1270 chr3L 16845025 16845045 chr3L 16845139 16845159 7 113 3.5 1.5 2.5 2.0 134 chr3L 16845025 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845159 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 D20-c2 1271 chr3L 16873348 16873356 chr3L 16873454 16873462 4 106 5.5 11.5 8.5 0.4 114 chr3L 16873348 intron Lmpt + chr3L 16873405 intron Lmpt + chr3L 16873462 intron Lmpt + chr3L_4_16870001 chr3L_16870001 D20-c2 1272 chr3L 16913664 16913698 chr3L 16913753 16913779 8 85 1.5 0.5 1.0 4.0 115 chr3L 16913664 intron Lmpt + chr3L 16913722 intron Lmpt + chr3L 16913779 intron Lmpt + chr3L_8_16910001 chr3L_16910001 D20-c2 1273 chr3L 16941400 16941410 chr3L 16941502 16941512 8 102 5.0 0.0 2.5 2.3 112 chr3L 16941400 intron Cpr73D - chr3L 16941456 intron Cpr73D - chr3L 16941512 intron Cpr73D - chr3L_8_16940001 chr3L_16940001 D20-c2 1274 chr3L 16945724 16945759 chr3L 16954878 16954913 roo 11 9154 5.0 5.5 5.2 1.8 9189 chr3L 16945724 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954913 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 D20-c2 1275 chr3L 17034931 17034965 chr3L 17035120 17035154 G2 5 189 0.5 1.5 1.0 2.5 223 chr3L 17034931 intergenic not near genes chr3L 17035042 intergenic not near genes chr3L 17035154 intergenic not near genes chr3L_5_17035001 chr3L_17035001 D20-c2 1276 chr3L 17085001 17085036 chr3L 17094151 17094186 roo 8 9150 6.5 4.0 5.2 1.3 9185 chr3L 17085001 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094186 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 D20-c2 1277 chr3L 17117101 17117131 chr3L 17117187 17117216 10 86 3.5 2.0 2.8 2.6 115 chr3L 17117101 intron Rbp6 - chr3L 17117158 intron Rbp6 - chr3L 17117216 intron Rbp6 - chr3L_10_17115001 chr3L_17115001 D20-c2 1278 chr3L 17137819 17137844 chr3L 17138983 17139008 6 1164 18.0 11.5 14.8 0.4 1189 chr3L 17137819 intron Rbp6 - chr3L 17138414 intron Rbp6 - chr3L 17139008 intron Rbp6 - chr3L_6_17135001 chr3L_17135001 D20-c2 1279 chr3L 17136086 17136096 chr3L 17139320 17139346 6 3237 45.0 33.0 39.0 0.1 3260 chr3L 17136086 intron Rbp6 - chr3L 17137716 intron Rbp6 - chr3L 17139346 intron Rbp6 - chr3L_6_17135001 chr3L_17135001 D20-c2 1280 chr3L 17149165 17149182 chr3L 17149247 17149264 8 82 7.5 0.0 3.8 1.7 99 chr3L 17149165 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149264 intron Rbp6 - chr3L_8_17145001 chr3L_17145001 D20-c2 1281 chr3L 17272239 17272248 chr3L 17272373 17272382 4 134 18.0 9.5 13.8 0.3 143 chr3L 17272239 intergenic not near genes chr3L 17272310 intergenic not near genes chr3L 17272382 intergenic not near genes chr3L_4_17270001 chr3L_17270001 D20-c2 1282 chr3L 17282990 17283024 chr3L 17283079 17283113 10 88 15.0 15.5 15.2 0.6 123 chr3L 17282990 intergenic not near genes chr3L 17283052 intergenic not near genes chr3L 17283113 intergenic not near genes chr3L_10_17280001 chr3L_17280001 D20-c2 1283 chr3L 17320878 17320914 chr3L 17320966 17321002 6 88 10.5 9.0 9.8 0.6 124 chr3L 17320878 intergenic CG6485 - chr3L 17320940 intergenic CG6485 - chr3L 17321002 intergenic CG6485 - chr3L_6_17320001 chr3L_17320001 D20-c2 1284 chr3L 17442675 17442703 chr3L 17464693 17464721 10 22017 10.5 13.0 11.8 0.8 22046 chr3L 17442675 intron CG18265 + chr3L 17453698 3` UTR CG18265 + chr3L 17464721 intergenic not near genes chr3L_10_17450001 chr3L_17450001 D20-c2 1285 chr3L 17495244 17495258 chr3L 17495360 17495374 7 116 13.0 9.0 11.0 0.6 130 chr3L 17495244 intron,3` UTR Oatp74D +,edin + chr3L 17495309 intron Oatp74D + chr3L 17495374 intron Oatp74D + chr3L_7_17495001 chr3L_17495001 D20-c2 1286 chr3L 17510743 17510765 chr3L 17510828 17510850 10 85 14.5 12.5 13.5 0.7 107 chr3L 17510743 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 D20-c2 1287 chr3L 17516979 17517010 chr3L 17524538 17524569 412 10 7559 2.0 4.0 3.0 2.5 7590 chr3L 17516979 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524569 3` UTR CG7564 + chr3L_10_17520001 chr3L_17520001 D20-c2 1288 chr3L 17535829 17535846 chr3L 17535944 17535961 5 115 11.5 17.5 14.5 0.3 132 chr3L 17535829 intron Nedd4 + chr3L 17535895 intron Nedd4 + chr3L 17535961 intron Nedd4 + chr3L_5_17535001 chr3L_17535001 D20-c2 1289 chr3L 17580585 17580603 chr3L 17580762 17580780 4 177 9.5 9.0 9.2 0.4 195 chr3L 17580585 intron Eip74EF - chr3L 17580682 intron Eip74EF - chr3L 17580780 intron Eip74EF - chr3L_4_17580001 chr3L_17580001 D20-c2 1290 chr3L 17730847 17730881 chr3L 17738178 17738212 mdg1 10 7331 2.5 2.0 2.2 3.1 7365 chr3L 17730847 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738212 intron Ccn + chr3L_10_17730001 chr3L_17730001 D20-c2 1291 chr3L 17746499 17746528 chr3L 17746577 17746606 6 78 16.5 16.5 16.5 0.3 107 chr3L 17746499 intron,exon Ccn +,CG6034 - chr3L 17746552 intron,exon Ccn +,CG6034 - chr3L 17746606 intron,exon Ccn +,CG6034 - chr3L_6_17745001 chr3L_17745001 D20-c2 1292 chr3L 17789847 17789876 chr3L 17789924 17789953 4 77 5.5 5.5 5.5 0.6 106 chr3L 17789847 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789953 intergenic not near genes chr3L_4_17785001 chr3L_17785001 D20-c2 1293 chr3L 17790602 17790633 chr3L 17790868 17790899 6 266 2.5 3.0 2.8 1.6 297 chr3L 17790602 intergenic CG42815 - chr3L 17790750 intergenic CG42815 - chr3L 17790899 intergenic CG42815 - chr3L_6_17790001 chr3L_17790001 D20-c2 1294 chr3L 17799817 17799832 chr3L 17801605 17801620 S-element 4 1788 3.5 2.0 2.8 1.1 1803 chr3L 17799817 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801620 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 D20-c2 1295 chr3L 17836215 17836237 chr3L 17836293 17836315 6 78 6.0 5.0 5.5 0.9 100 chr3L 17836215 intron Grd + chr3L 17836265 intron Grd + chr3L 17836315 intron Grd + chr3L_6_17835001 chr3L_17835001 D20-c2 1296 chr3L 17837636 17837655 chr3L 17837725 17837744 9 89 6.5 13.5 10.0 0.8 108 chr3L 17837636 exon Grd + chr3L 17837690 intron Grd + chr3L 17837744 exon Grd + chr3L_9_17835001 chr3L_17835001 D20-c2 1297 chr3L 17918370 17918403 chr3L 17921174 17921207 opus 5 2804 3.0 0.0 1.5 2.0 2837 chr3L 17918370 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_5_17915001 chr3L_17915001 D20-c2 1298 chr3L 17957063 17957083 chr3L 17957154 17957174 7 91 8.0 9.5 8.8 0.7 111 chr3L 17957063 intron Eip75B - chr3L 17957118 intron Eip75B - chr3L 17957174 intron Eip75B - chr3L_7_17955001 chr3L_17955001 D20-c2 1299 chr3L 17968136 17968165 chr3L 17968218 17968246 8 81 5.5 8.0 6.8 1.0 110 chr3L 17968136 intron Eip75B - chr3L 17968191 intron Eip75B - chr3L 17968246 intron Eip75B - chr3L_8_17965001 chr3L_17965001 D20-c2 1300 chr3L 18013982 18013989 chr3L 18014072 18014079 4 90 1.0 0.0 0.5 2.7 97 chr3L 18013982 intron Eip75B - chr3L 18014030 intron Eip75B - chr3L 18014079 intron Eip75B - chr3L_4_18010001 chr3L_18010001 D20-c2 1301 chr3L 18118222 18118241 chr3L 18118301 18118320 5 79 2.5 1.0 1.8 1.8 98 chr3L 18118222 3` UTR,intron CG32195 +,CG7341 + chr3L 18118271 3` UTR,intron CG32195 +,CG7341 + chr3L 18118320 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 D20-c2 1302 chr3L 18119657 18119678 chr3L 18119756 18119777 6 99 0.0 5.5 2.8 1.6 120 chr3L 18119657 intron CG7341 + chr3L 18119717 intron CG7341 + chr3L 18119777 intron CG7341 + chr3L_6_18115001 chr3L_18115001 D20-c2 1303 chr3L 18160872 18160901 chr3L 18160962 18160991 10 90 2.5 2.0 2.2 3.1 119 chr3L 18160872 intron CG13699 - chr3L 18160932 intron CG13699 - chr3L 18160991 intron CG13699 - chr3L_10_18160001 chr3L_18160001 D20-c2 1304 chr3L 18200953 18200963 chr3L 18201329 18201344 9 380 0.0 4.0 2.0 3.0 391 chr3L 18200953 intergenic not near genes chr3L 18201148 intergenic CG7320 + chr3L 18201344 intergenic CG7320 + chr3L_9_18200001 chr3L_18200001 D20-c2 1305 chr3L 18257138 18257160 chr3L 18257217 18257239 7 79 5.5 0.5 3.0 1.8 101 chr3L 18257138 intergenic not near genes chr3L 18257188 intergenic not near genes chr3L 18257239 intergenic not near genes chr3L_7_18255001 chr3L_18255001 D20-c2 1306 chr3L 18343659 18343681 chr3L 18343938 18343960 7 279 1.5 7.5 4.5 1.3 301 chr3L 18343659 intergenic not near genes chr3L 18343810 intergenic not near genes chr3L 18343960 intergenic not near genes chr3L_7_18340001 chr3L_18340001 D20-c2 1307 chr3L 18408730 18408759 chr3L 18408817 18408846 9 87 0.0 1.5 0.8 5.0 116 chr3L 18408730 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408846 intergenic not near genes chr3L_9_18405001 chr3L_18405001 D20-c2 1308 chr3L 9013689 9013697 chr3L 18417066 18417066 12 9403374 33.0 20.0 26.5 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_12_13715001 chr3L_13715001 D20-c2 1309 chr3L 18456271 18456300 chr3L 18456360 18456389 9 88 1.0 2.0 1.5 3.6 118 chr3L 18456271 intergenic CR44670 - chr3L 18456330 intergenic CR44670 - chr3L 18456389 intergenic CR44670 - chr3L_9_18455001 chr3L_18455001 D20-c2 1310 chr3L 18479063 18479096 chr3L 18479166 18479198 8 101 1.0 1.5 1.2 3.6 135 chr3L 18479063 5` UTR CR44673 + chr3L 18479130 5` UTR CR44673 + chr3L 18479198 5` UTR CR44673 + chr3L_8_18475001 chr3L_18475001 D20-c2 1311 chr3L 18506134 18506158 chr3L 18509598 18509622 F-element 6 3464 0.5 1.5 1.0 3.0 3488 chr3L 18506134 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509622 intergenic not near genes chr3L_6_18505001 chr3L_18505001 D20-c2 1312 chr3L 18546701 18546736 chr3L 18546796 18546831 13 95 1.5 3.0 2.2 4.1 130 chr3L 18546701 intergenic not near genes chr3L 18546766 intergenic not near genes chr3L 18546831 intergenic not near genes chr3L_13_18545001 chr3L_18545001 D20-c2 1313 chr3L 18593948 18593976 chr3L 18595929 18595957 Doc 11 1981 2.0 1.0 1.5 4.4 2009 chr3L 18593948 intergenic term - chr3L 18594952 intergenic not near genes chr3L 18595957 intergenic CR45389 + chr3L_11_18590001 chr3L_18590001 D20-c2 1314 chr3L 18656181 18656211 chr3L 18656267 18656297 14 86 4.5 4.5 4.5 2.5 116 chr3L 18656181 intron MYPT-75D + chr3L 18656239 intron MYPT-75D + chr3L 18656297 intron MYPT-75D + chr3L_14_18655001 chr3L_18655001 D20-c2 1315 chr3L 18657747 18657768 chr3L 18657887 18657908 11 139 4.0 1.5 2.8 2.9 161 chr3L 18657747 intron MYPT-75D + chr3L 18657828 intron MYPT-75D + chr3L 18657908 intron MYPT-75D + chr3L_11_18655001 chr3L_18655001 D20-c2 1316 chr3L 18686959 18686992 chr3L 18687391 18687424 14 432 3.0 4.0 3.5 3.1 465 chr3L 18686959 intergenic not near genes chr3L 18687192 intergenic not near genes chr3L 18687424 intergenic not near genes chr3L_14_18685001 chr3L_18685001 D20-c2 1317 chr3L 18696075 18696100 chr3L 18696195 18696220 13 119 2.5 5.5 4.0 2.6 145 chr3L 18696075 intergenic Dic4 -,CG6893 + chr3L 18696148 intergenic Dic4 -,CG6893 + chr3L 18696220 intergenic Dic4 - chr3L_13_18695001 chr3L_18695001 D20-c2 1318 chr3L 18721782 18721806 chr3L 18721874 18721898 6 92 1.5 2.5 2.0 2.0 116 chr3L 18721782 intergenic CG12477 - chr3L 18721840 intergenic CG12477 - chr3L 18721898 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 D20-c2 1319 chr3L 18753546 18753567 chr3L 18753629 18753650 9 83 0.5 2.5 1.5 3.6 104 chr3L 18753546 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753650 intron ftz-f1 - chr3L_9_18750001 chr3L_18750001 D20-c2 1320 chr3L 18772407 18772439 chr3L 18781089 18781121 roo 9 8682 2.5 4.0 3.2 2.1 8714 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_9_18775001 chr3L_18775001 D20-c2 1321 chr3L 18797310 18797338 chr3L 18797395 18797423 6 85 2.5 3.5 3.0 1.5 113 chr3L 18797310 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797423 intron ftz-f1 - chr3L_6_18795001 chr3L_18795001 D20-c2 1322 chr3L 18861763 18861798 chr3L 18861857 18861892 6 94 7.5 9.0 8.2 0.7 129 chr3L 18861763 intergenic not near genes chr3L 18861828 intergenic not near genes chr3L 18861892 intergenic not near genes chr3L_6_18860001 chr3L_18860001 D20-c2 1323 chr3L 18885991 18886003 chr3L 18886068 18886080 4 77 8.0 7.0 7.5 0.5 89 chr3L 18885991 intron CG3961 - chr3L 18886036 intron CG3961 - chr3L 18886080 intron CG3961 - chr3L_4_18885001 chr3L_18885001 D20-c2 1324 chr3L 18929974 18929990 chr3L 18930059 18930074 6 85 8.5 10.5 9.5 0.6 100 chr3L 18929974 intron CG32204 - chr3L 18930024 intron CG32204 - chr3L 18930074 exon CG32204 - chr3L_6_18930001 chr3L_18930001 D20-c2 1325 chr3L 18933089 18933128 chr3L 18933175 18933214 5 85 6.5 6.5 6.5 0.7 125 chr3L 18933089 intron CG32204 - chr3L 18933152 intron CG32204 - chr3L 18933214 intron CG32204 - chr3L_5_18930001 chr3L_18930001 D20-c2 1326 chr3L 18941711 18941736 chr3L 18941805 18941830 8 94 9.5 10.0 9.8 0.7 119 chr3L 18941711 intron CG32204 - chr3L 18941770 intron CG32204 - chr3L 18941830 intron CG32204 - chr3L_8_18940001 chr3L_18940001 D20-c2 1327 chr3L 18969608 18969630 chr3L 18969697 18969727 5 95 15.5 14.5 15.0 0.3 119 chr3L 18969608 intergenic not near genes chr3L 18969668 intergenic not near genes chr3L 18969727 intergenic not near genes chr3L_5_18965001 chr3L_18965001 D20-c2 1328 chr3L 19008851 19008865 chr3L 19009189 19009192 jockey 5 336 5.0 6.0 5.5 0.8 341 chr3L 19008851 intron nkd - chr3L 19009022 intron nkd - chr3L 19009192 intron nkd - chr3L_5_19005001 chr3L_19005001 D20-c2 1329 chr3L 19015180 19015211 chr3L 19015265 19015292 4 83 1.5 2.0 1.8 1.4 112 chr3L 19015180 intron nkd - chr3L 19015236 intron nkd - chr3L 19015292 intron nkd - chr3L_4_19015001 chr3L_19015001 D20-c2 1330 chr3L 19025932 19025960 chr3L 19026017 19026045 11 84 8.5 10.0 9.2 1.1 113 chr3L 19025932 intron nkd - chr3L 19025988 intron nkd - chr3L 19026045 intron nkd - chr3L_11_19025001 chr3L_19025001 D20-c2 1331 chr3L 19114201 19114225 chr3L 19114313 19114337 9 112 2.0 1.0 1.5 3.6 136 chr3L 19114201 intron CG14082 - chr3L 19114269 intron CG14082 - chr3L 19114337 intron CG14082 - chr3L_9_19110001 chr3L_19110001 D20-c2 1332 chr3L 19117046 19117074 chr3L 19124494 19124522 mdg1 6 7448 2.0 1.5 1.8 2.1 7476 chr3L 19117046 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_6_19120001 chr3L_19120001 D20-c2 1333 chr3L 19131305 19131332 chr3L 19132847 19132874 10 1543 27.5 37.5 32.5 0.3 1569 chr3L 19131305 intron CG14082 - chr3L 19132090 intron CG14082 - chr3L 19132874 intron CG14082 - chr3L_10_19130001 chr3L_19130001 D20-c2 1334 chr3L 19133675 19133700 chr3L 19133760 19133785 7 85 2.0 4.5 3.2 1.7 110 chr3L 19133675 intron CG14082 - chr3L 19133730 intron CG14082 - chr3L 19133785 intron CG14082 - chr3L_7_19130001 chr3L_19130001 D20-c2 1335 chr3L 19182385 19182420 chr3L 19182467 19182502 12 82 3.5 4.5 4.0 2.4 117 chr3L 19182385 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182502 intron fz2 - chr3L_12_19180001 chr3L_19180001 D20-c2 1336 chr3L 19208055 19208092 chr3L 19209430 19209466 Doc 10 1375 2.0 3.5 2.8 2.6 1411 chr3L 19208055 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209466 intron fz2 - chr3L_10_19205001 chr3L_19205001 D20-c2 1337 chr3L 19220637 19220637 chr3L 22908067 22908067 6 3687430 22.5 15.0 18.8 0.3 3687430 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 D20-c2 1338 chr3L 19238406 19238421 chr3L 19238953 19238968 10 547 2.0 4.0 3.0 2.5 562 chr3L 19238406 intergenic not near genes chr3L 19238687 intergenic not near genes chr3L 19238968 intergenic not near genes chr3L_10_19235001 chr3L_19235001 D20-c2 1339 chr3L 19269814 19269849 chr3L 19270019 19270054 16 205 3.0 6.0 4.5 2.9 240 chr3L 19269814 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270054 intron,exon CG14085 +,CG14088 - chr3L_16_19265001 chr3L_19265001 D20-c2 1340 chr3L 19282262 19282296 chr3L 19282359 19282393 6 96 1.0 3.0 2.0 2.0 131 chr3L 19282262 3` UTR Gbs-76A - chr3L 19282328 3` UTR Gbs-76A - chr3L 19282393 3` UTR Gbs-76A - chr3L_6_19280001 chr3L_19280001 D20-c2 1341 chr3L 19325413 19325434 chr3L 19325491 19325512 7 78 1.5 5.0 3.2 1.7 99 chr3L 19325413 intron pip - chr3L 19325462 intron pip - chr3L 19325512 intron pip - chr3L_7_19325001 chr3L_19325001 D20-c2 1342 chr3L 19365919 19365927 chr3L 19366017 19366025 5 98 0.0 4.0 2.0 1.7 106 chr3L 19365919 intron CG32206 - chr3L 19365972 intron CG32206 - chr3L 19366025 intron CG32206 - chr3L_5_19365001 chr3L_19365001 D20-c2 1343 chr3L 19417811 19417831 chr3L 19417892 19417892 6 78 1.0 8.5 4.8 1.0 81 chr3L 19417811 intergenic not near genes chr3L 19417852 intergenic not near genes chr3L 19417892 intergenic not near genes chr3L_6_19415001 chr3L_19415001 D20-c2 1344 chr3L 19426746 19426782 chr3L 19426825 19426853 12 78 4.0 2.0 3.0 3.0 107 chr3L 19426746 intergenic not near genes chr3L 19426800 intergenic not near genes chr3L 19426853 intergenic not near genes chr3L_12_19425001 chr3L_19425001 D20-c2 1345 chr3L 19434760 19434791 chr3L 19434840 19434871 9 80 2.5 4.0 3.2 2.1 111 chr3L 19434760 intergenic not near genes chr3L 19434816 intergenic not near genes chr3L 19434871 intergenic not near genes chr3L_9_19430001 chr3L_19430001 D20-c2 1346 chr3L 19488480 19488503 chr3L 19488563 19488586 5 83 6.0 1.5 3.8 1.0 106 chr3L 19488480 intergenic pncr009:3L -,CG32212 + chr3L 19488533 intergenic pncr009:3L -,CG32212 + chr3L 19488586 intergenic pncr009:3L -,CG32212 + chr3L_5_19485001 chr3L_19485001 D20-c2 1347 chr3L 19783444 19783464 chr3L 19783717 19783738 8 274 2.5 5.0 3.8 1.7 294 chr3L 19783444 intron,intron CG42637 -,Gyc76C - chr3L 19783591 intron,intron CG42637 -,Gyc76C - chr3L 19783738 intron,intron CG42637 -,Gyc76C - chr3L_8_19780001 chr3L_19780001 D20-c2 1348 chr3L 19820297 19820311 chr3L 19827847 19827861 412 7 7550 4.0 1.0 2.5 2.0 7564 chr3L 19820297 intron Deaf1 + chr3L 19824079 intron Deaf1 + chr3L 19827861 intron Deaf1 + chr3L_7_19820001 chr3L_19820001 D20-c2 1349 chr3L 19848502 19848535 chr3L 19857693 19857726 roo 6 9191 2.5 1.0 1.8 2.1 9224 chr3L 19848502 intron Papss + chr3L 19853114 intron Papss + chr3L 19857726 intron Papss + chr3L_6_19850001 chr3L_19850001 D20-c2 1350 chr3L 19861820 19861851 chr3L 19863609 19863640 S-element 6 1789 0.5 2.5 1.5 2.4 1820 chr3L 19861820 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_6_19860001 chr3L_19860001 D20-c2 1351 chr3L 19880651 19880678 chr3L 19885067 19885094 15 4416 54.5 36.0 45.2 0.3 4443 chr3L 19880651 exon CG8334 + chr3L 19882872 exon Mi-2 - chr3L 19885094 exon Mi-2 - chr3L_15_19880001 chr3L_19880001 D20-c2 1352 chr3L 19933546 19933551 chr3L 19934369 19934374 6 823 3.0 3.0 3.0 1.5 828 chr3L 19933546 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934374 intergenic CR45678 + chr3L_6_19930001 chr3L_19930001 D20-c2 1353 chr3L 19935449 19935473 chr3L 19937010 19937034 8 1559 2.5 2.0 2.2 2.5 1585 chr3L 19935449 intergenic not near genes chr3L 19936242 intergenic not near genes chr3L 19937034 intergenic not near genes chr3L_8_19935001 chr3L_19935001 D20-c2 1354 chr3L 20086785 20086806 chr3L 20086864 20086885 6 79 2.5 1.5 2.0 2.0 100 chr3L 20086785 intron sNPF-R - chr3L 20086835 intron sNPF-R - chr3L 20086885 intron sNPF-R - chr3L_6_20085001 chr3L_20085001 D20-c2 1355 chr3L 20097737 20097739 chr3L 20097855 20097857 4 118 2.0 3.0 2.5 1.1 120 chr3L 20097737 intergenic CG14186 - chr3L 20097797 intergenic CG14186 - chr3L 20097857 intergenic CG14186 - chr3L_4_20095001 chr3L_20095001 D20-c2 1356 chr3L 20113656 20113680 chr3L 20122914 20122938 roo 8 9258 2.5 3.5 3.0 2.0 9282 chr3L 20113656 intergenic not near genes chr3L 20118297 intergenic not near genes chr3L 20122938 intergenic not near genes chr3L_8_20115001 chr3L_20115001 D20-c2 1357 chr3L 20143083 20143115 chr3L 20143164 20143196 6 81 1.0 2.0 1.5 2.4 113 chr3L 20143083 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143196 intergenic not near genes chr3L_6_20140001 chr3L_20140001 D20-c2 1358 chr3L 20148282 20148318 chr3L 20148373 20148409 13 91 2.5 2.5 2.5 3.7 127 chr3L 20148282 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148409 intergenic not near genes chr3L_13_20145001 chr3L_20145001 D20-c2 1359 chr3L 20156164 20156192 chr3L 20156287 20156315 9 123 1.5 3.5 2.5 2.6 151 chr3L 20156164 intron CG42674 - chr3L 20156240 intron CG42674 - chr3L 20156315 intron CG42674 - chr3L_9_20155001 chr3L_20155001 D20-c2 1360 chr3L 20257335 20257357 chr3L 20258456 20258478 pogo 8 1121 2.5 3.5 3.0 2.0 1143 chr3L 20257335 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258478 intron rdgC + chr3L_8_20255001 chr3L_20255001 D20-c2 1361 chr3L 20283384 20283405 chr3L 20283465 20283469 10 79 1.5 6.0 3.8 2.1 85 chr3L 20283384 intron gogo - chr3L 20283426 intron gogo - chr3L 20283469 intron gogo - chr3L_10_20280001 chr3L_20280001 D20-c2 1362 chr3L 20386936 20386965 chr3L 20387039 20387068 12 103 4.0 2.5 3.2 2.9 132 chr3L 20386936 intron fbl + chr3L 20387002 intron fbl + chr3L 20387068 intron fbl + chr3L_12_20385001 chr3L_20385001 D20-c2 1363 chr3L 20462585 20462599 chr3L 20462667 20462681 4 82 1.0 3.5 2.2 1.2 96 chr3L 20462585 intron atk - chr3L 20462633 intron atk - chr3L 20462681 intron atk - chr3L_4_20460001 chr3L_20460001 D20-c2 1364 chr3L 20476755 20476784 chr3L 20484355 20484384 springer 9 7600 2.0 5.5 3.8 1.9 7629 chr3L 20476755 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_9_20480001 chr3L_20480001 D20-c2 1365 chr3L 20487662 20487674 chr3L 20488114 20488126 INE-1 6 452 10.5 2.0 6.2 0.8 464 chr3L 20487662 intron ZnT77C - chr3L 20487894 intron ZnT77C - chr3L 20488126 intron ZnT77C - chr3L_6_20485001 chr3L_20485001 D20-c2 1366 chr3L 20590067 20590097 chr3L 20590607 20590637 412 8 540 0.5 3.5 2.0 2.7 570 chr3L 20590067 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590637 intergenic not near genes chr3L_8_20590001 chr3L_20590001 D20-c2 1367 chr3L 20752111 20752127 chr3L 20752190 20752206 4 79 9.0 9.5 9.2 0.4 95 chr3L 20752111 intergenic not near genes chr3L 20752158 intergenic not near genes chr3L 20752206 intergenic not near genes chr3L_4_20750001 chr3L_20750001 D20-c2 1368 chr3L 20821296 20821308 chr3L 20824764 20824778 NOF 4 3470 2.5 3.5 3.0 1.0 3482 chr3L 20821296 intron Pka-R1 + chr3L 20823037 intron Pka-R1 + chr3L 20824778 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 D20-c2 1369 chr3L 20826358 20826387 chr3L 20826550 20826579 8 192 10.5 14.5 12.5 0.6 221 chr3L 20826358 intron Pka-R1 + chr3L 20826468 intron Pka-R1 + chr3L 20826579 intron Pka-R1 + chr3L_8_20825001 chr3L_20825001 D20-c2 1370 chr3L 20849274 20849302 chr3L 20849354 20849382 11 80 0.5 3.5 2.0 3.7 108 chr3L 20849274 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849382 intron CG32432 - chr3L_11_20845001 chr3L_20845001 D20-c2 1371 chr3L 20913748 20913782 chr3L 20913830 20913865 14 83 2.5 5.5 4.0 2.8 117 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913865 intergenic CR43930 - chr3L_14_20910001 chr3L_20910001 D20-c2 1372 chr3L 20917090 20917121 chr3L 20917168 20917199 7 78 5.0 7.5 6.2 1.0 109 chr3L 20917090 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917199 intergenic not near genes chr3L_7_20915001 chr3L_20915001 D20-c2 1373 chr3L 21010377 21010391 chr3L 21010485 21010498 4 108 8.0 4.0 6.0 0.6 121 chr3L 21010377 intron skd - chr3L 21010438 intron skd - chr3L 21010498 intron skd - chr3L_4_21010001 chr3L_21010001 D20-c2 1374 chr3L 21014915 21014948 chr3L 21023397 21023430 Tirant 20 8482 3.5 7.0 5.2 3.2 8515 chr3L 21014915 intron skd - chr3L 21019172 intron skd - chr3L 21023430 intron skd - chr3L_20_21015001 chr3L_21015001 D20-c2 1375 chr3L 21029928 21029959 chr3L 21030012 21030043 7 84 8.5 3.5 6.0 1.0 115 chr3L 21029928 3` UTR CG10585 + chr3L 21029986 3` UTR CG10585 + chr3L 21030043 3` UTR CG10585 + chr3L_7_21025001 chr3L_21025001 D20-c2 1376 chr3L 21067956 21067977 chr3L 21068037 21068058 8 81 12.5 10.0 11.2 0.7 102 chr3L 21067956 intron siz + chr3L 21068007 intron siz + chr3L 21068058 intron siz + chr3L_8_21065001 chr3L_21065001 D20-c2 1377 chr3L 21082210 21082239 chr3L 21082289 21082318 5 79 9.0 11.5 10.2 0.4 108 chr3L 21082210 intron ko - chr3L 21082264 intron ko - chr3L 21082318 intron ko - chr3L_5_21080001 chr3L_21080001 D20-c2 1378 chr3L 21151861 21151897 chr3L 21156946 21156982 flea 4 5085 2.5 4.0 3.2 1.0 5121 chr3L 21151861 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156982 intron Ac78C - chr3L_4_21150001 chr3L_21150001 D20-c2 1379 chr3L 21158606 21158625 chr3L 21158683 21158702 5 77 10.5 9.5 10.0 0.5 96 chr3L 21158606 intron Ac78C - chr3L 21158654 intron Ac78C - chr3L 21158702 intron Ac78C - chr3L_5_21155001 chr3L_21155001 D20-c2 1380 chr3L 21172855 21172873 chr3L 21172959 21172977 4 104 4.0 5.0 4.5 0.7 122 chr3L 21172855 5` UTR chb + chr3L 21172916 5` UTR chb + chr3L 21172977 5` UTR chb + chr3L_4_21170001 chr3L_21170001 D20-c2 1381 chr3L 21186048 21186084 chr3L 21186125 21186161 4 75 10.5 12.0 11.2 0.3 113 chr3L 21186048 intron CG42337 - chr3L 21186104 intron CG42337 - chr3L 21186161 intron CG42337 - chr3L_4_21185001 chr3L_21185001 D20-c2 1382 chr3L 21232805 21232836 chr3L 21232934 21232965 6 129 8.5 10.0 9.2 0.6 160 chr3L 21232805 intron Eip78C + chr3L 21232885 intron Eip78C + chr3L 21232965 intron Eip78C + chr3L_6_21230001 chr3L_21230001 D20-c2 1383 chr3L 21243746 21243758 chr3L 21251310 21251322 412 6 7564 5.5 2.5 4.0 1.2 7576 chr3L 21243746 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251322 intron Eip78C + chr3L_6_21245001 chr3L_21245001 D20-c2 1384 chr3L 21301734 21301760 chr3L 21301821 21301846 6 87 7.5 6.0 6.8 0.8 112 chr3L 21301734 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301846 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_6_21300001 chr3L_21300001 D20-c2 1385 chr3L 21306146 21306180 chr3L 21315306 21315340 roo 6 9160 0.0 2.5 1.2 2.7 9194 chr3L 21306146 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310743 intron Pc - chr3L 21315340 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 D20-c2 1386 chr3L 21319529 21319556 chr3L 21319620 21319647 9 91 4.5 1.5 3.0 2.2 118 chr3L 21319529 5` UTR Rab26 + chr3L 21319588 5` UTR Rab26 + chr3L 21319647 5` UTR Rab26 + chr3L_9_21315001 chr3L_21315001 D20-c2 1387 chr3L 21393235 21393258 chr3L 21393499 21393529 5 270 15.0 12.0 13.5 0.3 294 chr3L 21393235 intron rgn + chr3L 21393382 intron rgn + chr3L 21393529 intron rgn + chr3L_5_21390001 chr3L_21390001 D20-c2 1388 chr3L 21407004 21407027 chr3L 21407084 21407107 7 80 4.5 6.0 5.2 1.1 103 chr3L 21407004 intron rgn + chr3L 21407056 intron rgn + chr3L 21407107 intron rgn + chr3L_7_21405001 chr3L_21405001 D20-c2 1389 chr3L 21456782 21456803 chr3L 21456876 21456897 5 94 14.0 14.0 14.0 0.3 115 chr3L 21456782 intergenic not near genes chr3L 21456840 intergenic not near genes chr3L 21456897 intergenic not near genes chr3L_5_21455001 chr3L_21455001 D20-c2 1390 chr3L 21498833 21498870 chr3L 21500470 21500507 1360 8 1636 8.5 12.0 10.2 0.7 1674 chr3L 21498833 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500507 intron Glg1 - chr3L_8_21495001 chr3L_21495001 D20-c2 1391 chr3L 21639196 21639222 chr3L 21639276 21639302 5 80 13.0 12.0 12.5 0.4 106 chr3L 21639196 intergenic CG32444 +,CG32445 + chr3L 21639249 intergenic CG32445 +,CG32444 + chr3L 21639302 intergenic CG32445 +,CG32444 + chr3L_5_21635001 chr3L_21635001 D20-c2 1392 chr3L 21852261 21852279 chr3L 21852349 21852373 8 93 14.5 17.5 16.0 0.5 112 chr3L 21852261 intron mub + chr3L 21852317 intron mub + chr3L 21852373 intron mub + chr3L_8_21850001 chr3L_21850001 D20-c2 1393 chr3L 21855242 21855275 chr3L 21855321 21855354 8 78 12.0 10.0 11.0 0.7 112 chr3L 21855242 intron mub + chr3L 21855298 intron mub + chr3L 21855354 intron mub + chr3L_8_21855001 chr3L_21855001 D20-c2 1394 chr3L 21871561 21871591 chr3L 21871650 21871680 9 89 10.5 15.0 12.8 0.7 119 chr3L 21871561 intron mub + chr3L 21871620 intron mub + chr3L 21871680 intron mub + chr3L_9_21870001 chr3L_21870001 D20-c2 1395 chr3L 22099676 22099704 chr3L 22105863 22105891 3S18 5 6187 9.5 6.0 7.8 0.6 6215 chr3L 22099676 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_5_22100001 chr3L_22100001 D20-c2 1396 chr3L 22169462 22169487 chr3L 22169556 22169581 4 94 5.5 7.0 6.2 0.6 119 chr3L 22169462 intron olf413 + chr3L 22169522 intron olf413 + chr3L 22169581 intron olf413 + chr3L_4_22165001 chr3L_22165001 D20-c2 1397 chr3L 22199447 22199471 chr3L 22199591 22199615 7 144 18.5 13.0 15.8 0.4 168 chr3L 22199447 intron olf413 + chr3L 22199531 intron olf413 + chr3L 22199615 intron olf413 + chr3L_7_22195001 chr3L_22195001 D20-c2 1398 chr3L 22361937 22361961 chr3L 22362015 22362039 7 78 3.0 2.0 2.5 2.0 102 chr3L 22361937 intron Ten-m - chr3L 22361988 intron Ten-m - chr3L 22362039 intron Ten-m - chr3L_7_22360001 chr3L_22360001 D20-c2 1399 chr3L 22395611 22395628 chr3L 22395695 22395712 4 84 5.5 10.0 7.8 0.5 101 chr3L 22395611 intron Ten-m - chr3L 22395662 intron Ten-m - chr3L 22395712 intron Ten-m - chr3L_4_22395001 chr3L_22395001 D20-c2 1400 chr3L 22555775 22555796 chr3L 22563246 22563267 blood 8 7470 14.0 13.0 13.5 0.6 7492 chr3L 22555775 intergenic not near genes chr3L 22559521 intergenic not near genes chr3L 22563267 intergenic not near genes chr3L_8_22555001 chr3L_22555001 D20-c2 1401 chr3L 22570433 22570450 chr3L 22570578 22570595 5 145 7.0 9.5 8.2 0.5 162 chr3L 22570433 intergenic not near genes chr3L 22570514 intergenic not near genes chr3L 22570595 intergenic not near genes chr3L_5_22570001 chr3L_22570001 D20-c2 1402 chr3L 22577621 22577646 chr3L 22582410 22582435 Doc 13 4789 5.0 4.5 4.8 2.2 4814 chr3L 22577621 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_13_22580001 chr3L_22580001 D20-c2 1403 chr3L 22617188 22617221 chr3L 22624641 22624674 blood 9 7453 13.0 9.0 11.0 0.8 7486 chr3L 22617188 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_9_22620001 chr3L_22620001 D20-c2 1404 chr3L 22630739 22630773 chr3L 22630819 22630841 12 79 11.0 12.0 11.5 1.0 102 chr3L 22630739 intron CG14459 - chr3L 22630790 intron CG14459 - chr3L 22630841 intron CG14459 - chr3L_12_22630001 chr3L_22630001 D20-c2 1405 chr3L 22652335 22652352 chr3L 22652474 22652491 6 139 14.0 14.0 14.0 0.4 156 chr3L 22652335 exon CG33772 - chr3L 22652413 intron CG33772 - chr3L 22652491 exon CG33772 - chr3L_6_22650001 chr3L_22650001 D20-c2 1406 chr3L 22761392 22761422 chr3L 22766827 22766856 Ivk 7 5435 8.0 3.5 5.8 1.0 5464 chr3L 22761392 intron SPoCk + chr3L 22764124 intron SPoCk + chr3L 22766856 intron SPoCk + chr3L_7_22760001 chr3L_22760001 D20-c2 1407 chr3L 22786063 22786099 chr3L 22788499 22788535 7 2436 7.0 22.0 14.5 0.5 2472 chr3L 22786063 3` UTR SPoCk + chr3L 22787299 3` UTR SPoCk + chr3L 22788535 exon CG14448 + chr3L_7_22785001 chr3L_22785001 D20-c2 1408 chr3L 22853462 22853720 chr3L 22853550 22853807 10 88 10.0 12.5 11.2 0.8 345 chr3L 22853462 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_10_22850001 chr3L_22850001 D20-c2 1409 chr3L 22855325 22855358 chr3L 22855409 22855416 8 81 14.0 12.5 13.2 0.6 91 chr3L 22855325 exon CG32459 - chr3L 22855370 exon CG32459 - chr3L 22855416 exon CG32459 - chr3L_8_22855001 chr3L_22855001 D20-c2 1410 chr3L 19220633 19220637 chr3L 22908066 22908066 29 3687432 22.5 15.0 18.8 1.5 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_29_21060001 chr3L_21060001 D20-c2 1411 chr3L 19220633 19220637 chr3L 22908067 22908067 13 3687432 22.5 15.0 18.8 0.7 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_13_21060001 chr3L_21060001 D20-c2 1412 chr3L 22989860 22989892 chr3L 22996835 22996867 297 12 6975 6.5 8.0 7.2 1.5 7007 chr3L 22989860 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996867 intergenic not near genes chr3L_12_22990001 chr3L_22990001 D20-c2 1413 chr3L 23042224 23042258 chr3L 23048978 23049012 gypsy6 5 6754 10.5 9.0 9.8 0.5 6788 chr3L 23042224 intergenic not near genes chr3L 23045618 intergenic not near genes chr3L 23049012 intergenic not near genes chr3L_5_23045001 chr3L_23045001 D20-c2 1414 chr3L 23088286 23088310 chr3L 23088369 23088393 6 80 10.0 9.5 9.8 0.6 107 chr3L 23088286 intergenic not near genes chr3L 23088340 intergenic not near genes chr3L 23088393 intergenic not near genes chr3L_6_23085001 chr3L_23085001 D20-c2 1415 chr3L 23603171 23603186 chr3L 23603266 23603281 7 95 16.0 12.0 14.0 0.5 110 chr3L 23603171 intron AGO3 + chr3L 23603226 intron AGO3 + chr3L 23603281 intron AGO3 + chr3L_7_23600001 chr3L_23600001 D20-c2 1416 chr3L 24168789 24168818 chr3L 24176116 24176147 ZAM 9 7327 6.5 6.5 6.5 1.2 7358 chr3L 24168789 intron Snap25 + chr3L 24172468 intron Snap25 + chr3L 24176147 intron Snap25 + chr3L_9_24170001 chr3L_24170001 D20-c2 1417 chr3L 24892824 24892829 chr3L 24893006 24893011 5 182 12.0 6.0 9.0 0.5 187 chr3L 24892824 intergenic not near genes chr3L 24892918 intergenic not near genes chr3L 24893011 intergenic not near genes chr3L_5_24890001 chr3L_24890001 D20-c2 1418 chr3L 24892830 24892842 chr3L 24893002 24893024 4 180 10.0 5.0 7.5 0.5 194 chr3L 24892830 intergenic not near genes chr3L 24892927 intergenic not near genes chr3L 24893024 intergenic not near genes chr3L_4_24890001 chr3L_24890001 D20-c2 1419 chr3L 26290091 26290128 chr3L 26290263 26290299 8 171 8.5 15.0 11.8 0.6 208 chr3L 26290091 intergenic not near genes chr3L 26290195 intergenic not near genes chr3L 26290299 intergenic not near genes chr3L_8_26290001 chr3L_26290001 D20-c2 1420 chr3L 27390687 27390711 chr3L 27390767 27390791 10 80 35.0 36.5 35.8 0.3 104 chr3L 27390687 intron Dbp80 + chr3L 27390739 intron Dbp80 + chr3L 27390791 intron Dbp80 + chr3L_10_27390001 chr3L_27390001 D20-c2 1421 chr3R 1521171 1521184 chr3R 1521253 1521273 7 86 16.5 15.0 15.8 0.4 102 chr3R 1521171 intergenic not near genes chr3R 1521222 intergenic not near genes chr3R 1521273 intergenic not near genes chr3R_7_1520001 chr3R_1520001 D20-c2 1422 chr3R 2424351 2424361 chr3R 20901736 20901747 5 18477386 6.5 7.0 6.8 0.6 18477396 chr3R 2424351 intergenic not near genes chr3R 11663049 intron CG42327 + chr3R 20901747 intergenic CG5621 + chr3R_5_11660001 chr3R_11660001 D20-c2 1423 chr3R 2534133 2534167 chr3R 2541703 2541737 26 7570 27.5 24.0 25.8 1.0 7604 chr3R 2534133 intergenic not near genes chr3R 2537935 intergenic not near genes chr3R 2541737 intergenic not near genes chr3R_26_2535001 chr3R_2535001 D20-c2 1424 chr3R 2556882 2556913 chr3R 2557614 2557645 4 732 17.0 15.5 16.2 0.2 763 chr3R 2556882 intron CG41056 - chr3R 2557264 intron CG41056 - chr3R 2557645 intron CG41056 - chr3R_4_2555001 chr3R_2555001 D20-c2 1425 chr3R 3178706 3178714 chr3R 3595191 3595199 4 416485 10.0 21.5 15.8 0.2 416493 chr3R 3178706 intron CG42617 - chr3R 3386952 intergenic not near genes chr3R 3595199 intergenic not near genes chr3R_4_3385001 chr3R_3385001 D20-c2 1426 chr3R 4063808 4063829 chr3R 4069089 4069109 4 5281 7.0 11.0 9.0 0.4 5301 chr3R 4063808 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 D20-c2 1427 chr3R 4206083 4206104 chr3R 4211659 4211664 mdg3 4 5572 8.0 4.0 6.0 0.6 5581 chr3R 4206083 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211664 intron CG14636 - chr3R_4_4205001 chr3R_4205001 D20-c2 1428 chr3R 4366761 4366784 chr3R 4375145 4375168 roo 6 8384 11.0 11.5 11.2 0.5 8407 chr3R 4366761 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375168 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 D20-c2 1429 chr3R 4454196 4454213 chr3R 4454275 4454292 6 79 5.5 4.0 4.8 1.0 96 chr3R 4454196 intron,5` UTR CG31522 -,CR43629 + chr3R 4454244 intron,5` UTR CG31522 -,CR43629 + chr3R 4454292 intron,5` UTR CG31522 -,CR43629 + chr3R_6_4450001 chr3R_4450001 D20-c2 1430 chr3R 4648477 4648507 chr3R 4648562 4648592 8 85 1.5 3.0 2.2 2.5 115 chr3R 4648477 3` UTR rpk + chr3R 4648534 3` UTR rpk + chr3R 4648592 3` UTR rpk + chr3R_8_4645001 chr3R_4645001 D20-c2 1431 chr3R 4887481 4887509 chr3R 4894859 4894887 rover 11 7378 6.0 5.5 5.8 1.6 7406 chr3R 4887481 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_11_4890001 chr3R_4890001 D20-c2 1432 chr3R 5045842 5045878 chr3R 5052945 5052981 HMS-Beagle 19 7103 5.5 6.0 5.8 2.8 7139 chr3R 5045842 intron CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052981 intergenic CR45588 - chr3R_19_5045001 chr3R_5045001 D20-c2 1433 chr3R 5726098 5726123 chr3R 5726261 5726286 4 163 1.0 0.5 0.8 2.2 188 chr3R 5726098 intergenic not near genes chr3R 5726192 intergenic not near genes chr3R 5726286 intergenic not near genes chr3R_4_5725001 chr3R_5725001 D20-c2 1434 chr3R 5746016 5746046 chr3R 5746258 5746288 pogo 10 242 4.5 3.0 3.8 2.1 272 chr3R 5746016 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746288 3` UTR Madm + chr3R_10_5745001 chr3R_5745001 D20-c2 1435 chr3R 5747010 5747048 chr3R 5753202 5753240 diver 7 6192 1.0 1.0 1.0 3.5 6230 chr3R 5747010 intergenic Madm + chr3R 5750125 intergenic not near genes chr3R 5753240 intergenic CG2091 - chr3R_7_5750001 chr3R_5750001 D20-c2 1436 chr3R 5809112 5809143 chr3R 5809354 5809385 pogo 10 242 4.5 2.0 3.2 2.4 273 chr3R 5809112 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 D20-c2 1437 chr3R 5822380 5822413 chr3R 5823548 5823581 1360 12 1168 4.0 5.0 4.5 2.2 1201 chr3R 5822380 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823581 3` UTR CG2023 - chr3R_12_5820001 chr3R_5820001 D20-c2 1438 chr3R 5893173 5893203 chr3R 5893346 5893376 8 173 2.5 2.0 2.2 2.5 203 chr3R 5893173 intron CG34113 - chr3R 5893274 intron CG34113 - chr3R 5893376 intron CG34113 - chr3R_8_5890001 chr3R_5890001 D20-c2 1439 chr3R 5895961 5895985 chr3R 5896176 5896200 6 215 2.0 2.5 2.2 1.9 239 chr3R 5895961 intron CG34113 - chr3R 5896080 intron CG34113 - chr3R 5896200 intron CG34113 - chr3R_6_5895001 chr3R_5895001 D20-c2 1440 chr3R 5896970 5896995 chr3R 5897329 5897355 10 360 3.5 2.0 2.8 2.6 385 chr3R 5896970 intron CG34113 - chr3R 5897162 intron CG34113 - chr3R 5897355 intron CG34113 - chr3R_10_5895001 chr3R_5895001 D20-c2 1441 chr3R 5927560 5927591 chr3R 5927801 5927832 pogo 14 240 3.0 2.0 2.5 4.0 272 chr3R 5927560 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927832 intron CG34113 - chr3R_14_5925001 chr3R_5925001 D20-c2 1442 chr3R 5935361 5935393 chr3R 5935438 5935470 9 77 2.0 2.5 2.2 2.8 109 chr3R 5935361 intron CG34113 - chr3R 5935416 intron CG34113 - chr3R 5935470 intron CG34113 - chr3R_9_5935001 chr3R_5935001 D20-c2 1443 chr3R 5988899 5988932 chr3R 5989101 5989133 10 202 2.5 2.5 2.5 2.9 234 chr3R 5988899 intergenic CR44927 + chr3R 5989016 intergenic CR44927 + chr3R 5989133 intergenic CR44927 + chr3R_10_5985001 chr3R_5985001 D20-c2 1444 chr3R 5991469 5991487 chr3R 5991540 5991571 10 82 4.5 5.5 5.0 1.7 102 chr3R 5991469 intergenic not near genes chr3R 5991520 intergenic not near genes chr3R 5991571 intergenic not near genes chr3R_10_5990001 chr3R_5990001 D20-c2 1445 chr3R 5999467 5999495 chr3R 5999551 5999579 8 84 3.0 4.5 3.8 1.7 112 chr3R 5999467 intergenic not near genes chr3R 5999523 intergenic not near genes chr3R 5999579 intergenic not near genes chr3R_8_5995001 chr3R_5995001 D20-c2 1446 chr3R 6015967 6015994 chr3R 6024449 6024476 Tirant 13 8482 4.0 4.0 4.0 2.6 8509 chr3R 6015967 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_13_6020001 chr3R_6020001 D20-c2 1447 chr3R 6048444 6048477 chr3R 6048528 6048561 10 84 5.0 3.0 4.0 2.0 117 chr3R 6048444 intergenic not near genes chr3R 6048502 intergenic not near genes chr3R 6048561 intergenic not near genes chr3R_10_6045001 chr3R_6045001 D20-c2 1448 chr3R 6121021 6121174 chr3R 6121098 6121393 15 105 0.0 3.5 1.8 5.4 372 chr3R 6121021 intergenic not near genes chr3R 6121207 intergenic not near genes chr3R 6121393 intergenic not near genes chr3R_15_6120001 chr3R_6120001 D20-c2 1449 chr3R 6121179 6121184 chr3R 6121398 6121403 BS 4 219 0.0 5.0 2.5 1.1 224 chr3R 6121179 intergenic not near genes chr3R 6121291 intergenic not near genes chr3R 6121403 intergenic not near genes chr3R_4_6120001 chr3R_6120001 D20-c2 1450 chr3R 6158506 6158539 chr3R 6167090 6167117 Tirant 8 8582 4.0 2.0 3.0 2.0 8611 chr3R 6158506 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167117 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 D20-c2 1451 chr3R 6175171 6175206 chr3R 6182444 6182479 HMS-Beagle2 7 7272 1.5 2.5 2.0 2.3 7308 chr3R 6175171 intergenic Osi1 + chr3R 6178825 intron CR45194 + chr3R 6182479 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 D20-c2 1452 chr3R 6189726 6189751 chr3R 6189808 6189833 10 82 2.5 1.5 2.0 3.3 107 chr3R 6189726 intron NPFR + chr3R 6189780 intron NPFR + chr3R 6189833 intron NPFR + chr3R_10_6185001 chr3R_6185001 D20-c2 1453 chr3R 6191170 6191196 chr3R 6191251 6191277 6 81 3.5 1.5 2.5 1.7 107 chr3R 6191170 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191277 intron NPFR + chr3R_6_6190001 chr3R_6190001 D20-c2 1454 chr3R 6206289 6206315 chr3R 6206507 6206533 BS 14 218 7.0 5.5 6.2 1.9 244 chr3R 6206289 exon Osi24 + chr3R 6206411 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_14_6205001 chr3R_6205001 D20-c2 1455 chr3R 6302584 6302618 chr3R 6302664 6302698 14 80 3.5 3.5 3.5 3.1 114 chr3R 6302584 intron Osi15 + chr3R 6302641 intron Osi15 + chr3R 6302698 intron Osi15 + chr3R_14_6300001 chr3R_6300001 D20-c2 1456 chr3R 6461598 6461611 chr3R 6461679 6461692 5 81 0.5 2.5 1.5 2.0 94 chr3R 6461598 intergenic not near genes chr3R 6461645 intergenic not near genes chr3R 6461692 intergenic not near genes chr3R_5_6460001 chr3R_6460001 D20-c2 1457 chr3R 6510025 6510055 chr3R 6515107 6515137 jockey 5 5082 2.0 2.0 2.0 1.7 5112 chr3R 6510025 intergenic not near genes chr3R 6512581 intergenic not near genes chr3R 6515137 intergenic not near genes chr3R_5_6510001 chr3R_6510001 D20-c2 1458 chr3R 6523315 6523348 chr3R 6523692 6523725 10 377 2.0 1.5 1.8 3.6 410 chr3R 6523315 intergenic not near genes chr3R 6523520 intergenic not near genes chr3R 6523725 intergenic not near genes chr3R_10_6520001 chr3R_6520001 D20-c2 1459 chr3R 6737496 6737524 chr3R 6739284 6739312 Doc 9 1788 4.0 3.5 3.8 1.9 1816 chr3R 6737496 intron pb - chr3R 6738404 intron pb - chr3R 6739312 intron pb - chr3R_9_6735001 chr3R_6735001 D20-c2 1460 chr3R 6862218 6862249 chr3R 6862306 6862337 8 88 2.5 2.5 2.5 2.3 119 chr3R 6862218 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862337 intergenic not near genes chr3R_8_6860001 chr3R_6860001 D20-c2 1461 chr3R 6891251 6891262 chr3R 6891328 6891339 4 77 5.0 2.0 3.5 0.9 88 chr3R 6891251 intergenic not near genes chr3R 6891295 intergenic not near genes chr3R 6891339 intergenic not near genes chr3R_4_6890001 chr3R_6890001 D20-c2 1462 chr3R 6918063 6918093 chr3R 6918142 6918172 6 79 1.0 1.5 1.2 2.7 109 chr3R 6918063 intron Antp - chr3R 6918118 intron Antp - chr3R 6918172 intron Antp - chr3R_6_6915001 chr3R_6915001 D20-c2 1463 chr3R 6972365 6972385 chr3R 6972443 6972463 4 78 1.5 3.0 2.2 1.2 98 chr3R 6972365 intron Antp - chr3R 6972414 intron Antp - chr3R 6972463 intron Antp - chr3R_4_6970001 chr3R_6970001 D20-c2 1464 chr3R 6978879 6978915 chr3R 6978965 6979001 15 86 3.5 1.5 2.5 4.3 122 chr3R 6978879 intron Antp - chr3R 6978940 intron Antp - chr3R 6979001 intron Antp - chr3R_15_6975001 chr3R_6975001 D20-c2 1465 chr3R 6987412 6987429 chr3R 6987496 6987513 10 83 3.0 5.0 4.0 2.0 101 chr3R 6987412 intron Antp - chr3R 6987462 intron Antp - chr3R 6987513 intron Antp - chr3R_10_6985001 chr3R_6985001 D20-c2 1466 chr3R 7068518 7068528 chr3R 7068644 7068654 5 126 4.0 4.5 4.2 1.0 136 chr3R 7068518 intron CG1965 + chr3R 7068586 intron CG1965 + chr3R 7068654 intron CG1965 + chr3R_5_7065001 chr3R_7065001 D20-c2 1467 chr3R 7103286 7103312 chr3R 7103363 7103389 10 76 3.5 3.0 3.2 2.4 103 chr3R 7103286 intron Alh - chr3R 7103338 intron Alh - chr3R 7103389 intron Alh - chr3R_10_7100001 chr3R_7100001 D20-c2 1468 chr3R 7126502 7126534 chr3R 7126598 7126630 11 96 0.5 1.5 1.0 5.5 128 chr3R 7126502 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126630 3` UTR CG10068 - chr3R_11_7125001 chr3R_7125001 D20-c2 1469 chr3R 7205989 7205995 chr3R 7206078 7206084 4 89 3.0 3.0 3.0 1.0 95 chr3R 7205989 intergenic not near genes chr3R 7206036 intergenic not near genes chr3R 7206084 intergenic not near genes chr3R_4_7205001 chr3R_7205001 D20-c2 1470 chr3R 7205996 7206005 chr3R 7206074 7206094 4 86 2.5 1.5 2.0 1.3 98 chr3R 7205996 intergenic not near genes chr3R 7206045 intergenic not near genes chr3R 7206094 intergenic not near genes chr3R_4_7205001 chr3R_7205001 D20-c2 1471 chr3R 7447996 7448011 chr3R 7448075 7448090 7 79 4.0 3.0 3.5 1.6 94 chr3R 7447996 intergenic not near genes chr3R 7448043 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_7_7445001 chr3R_7445001 D20-c2 1472 chr3R 7548601 7548627 chr3R 7548681 7548707 10 79 4.5 3.5 4.0 2.0 106 chr3R 7548601 intron alpha-Est1 - chr3R 7548654 intron alpha-Est1 - chr3R 7548707 intron alpha-Est1 - chr3R_10_7545001 chr3R_7545001 D20-c2 1473 chr3R 7617994 7618015 chr3R 7618087 7618108 6 93 1.5 4.5 3.0 1.5 114 chr3R 7617994 intron CG34127 - chr3R 7618051 intron CG34127 - chr3R 7618108 intron CG34127 - chr3R_6_7615001 chr3R_7615001 D20-c2 1474 chr3R 7621550 7621555 chr3R 7621641 7621646 5 91 2.5 7.0 4.8 0.9 96 chr3R 7621550 intron CG34127 - chr3R 7621598 intron CG34127 - chr3R 7621646 intron CG34127 - chr3R_5_7620001 chr3R_7620001 D20-c2 1475 chr3R 7653827 7653844 chr3R 7653914 7653931 9 87 3.5 5.0 4.2 1.7 104 chr3R 7653827 intergenic not near genes chr3R 7653879 intergenic not near genes chr3R 7653931 intergenic not near genes chr3R_9_7650001 chr3R_7650001 D20-c2 1476 chr3R 7677918 7677936 chr3R 7678032 7678050 4 114 2.5 4.5 3.5 0.9 132 chr3R 7677918 intron Nlg1 + chr3R 7677984 intron Nlg1 + chr3R 7678050 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 D20-c2 1477 chr3R 7686817 7686848 chr3R 7686899 7686930 16 82 2.0 1.0 1.5 6.4 113 chr3R 7686817 intron Nlg1 + chr3R 7686874 intron Nlg1 + chr3R 7686930 intron Nlg1 + chr3R_16_7685001 chr3R_7685001 D20-c2 1478 chr3R 7687804 7687831 chr3R 7687882 7687916 11 84 3.5 4.0 3.8 2.3 112 chr3R 7687804 intron Nlg1 + chr3R 7687860 intron Nlg1 + chr3R 7687916 intron Nlg1 + chr3R_11_7685001 chr3R_7685001 D20-c2 1479 chr3R 7694575 7694587 chr3R 7713637 7713649 invader3 5 19062 2.5 3.0 2.8 1.3 19074 chr3R 7694575 3` UTR Nlg1 + chr3R 7704112 intergenic not near genes chr3R 7713649 intergenic not near genes chr3R_5_7700001 chr3R_7700001 D20-c2 1480 chr3R 7729469 7729495 chr3R 7737408 7737434 Stalker2 7 7939 5.5 5.5 5.5 1.1 7965 chr3R 7729469 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_7_7730001 chr3R_7730001 D20-c2 1481 chr3R 7849640 7849669 chr3R 7850808 7850837 1360 7 1168 1.0 4.5 2.8 1.8 1197 chr3R 7849640 intron CG34384 + chr3R 7850238 intron CG34384 + chr3R 7850837 intron CG34384 + chr3R_7_7850001 chr3R_7850001 D20-c2 1482 chr3R 7857641 7857669 chr3R 7857725 7857753 6 84 3.5 2.5 3.0 1.5 112 chr3R 7857641 3` UTR CG17816 - chr3R 7857697 3` UTR CG17816 - chr3R 7857753 3` UTR CG17816 - chr3R_6_7855001 chr3R_7855001 D20-c2 1483 chr3R 7944050 7944080 chr3R 7944223 7944253 7 172 2.0 3.0 2.5 2.0 203 chr3R 7944050 intron dsx - chr3R 7944152 intron dsx - chr3R 7944253 intron dsx - chr3R_7_7940001 chr3R_7940001 D20-c2 1484 chr3R 7955934 7955968 chr3R 7956012 7956046 10 78 2.0 2.0 2.0 3.3 112 chr3R 7955934 intron dsx - chr3R 7955990 intron dsx - chr3R 7956046 intron dsx - chr3R_10_7955001 chr3R_7955001 D20-c2 1485 chr3R 7965308 7965343 chr3R 7965397 7965432 11 89 3.5 2.5 3.0 2.8 124 chr3R 7965308 intron dsx - chr3R 7965370 intron dsx - chr3R 7965432 intron dsx - chr3R_11_7965001 chr3R_7965001 D20-c2 1486 chr3R 7973313 7973346 chr3R 7974376 7974410 1360 7 1064 0.0 0.5 0.2 5.8 1097 chr3R 7973313 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974410 3` UTR CD98hc - chr3R_7_7970001 chr3R_7970001 D20-c2 1487 chr3R 8049051 8049061 chr3R 8049626 8049636 6 575 6.0 2.5 4.2 1.2 585 chr3R 8049051 intron CG43060 + chr3R 8049344 intron,intron CG43060 +,CG43618 + chr3R 8049636 intron CG43060 + chr3R_6_8045001 chr3R_8045001 D20-c2 1488 chr3R 8070914 8070928 chr3R 8070996 8071010 9 81 6.5 11.0 8.8 0.9 96 chr3R 8070914 intron mAChR-B + chr3R 8070962 intron mAChR-B + chr3R 8071010 intron mAChR-B + chr3R_9_8070001 chr3R_8070001 D20-c2 1489 chr3R 8090275 8090301 chr3R 8090453 8090479 8 178 1.5 7.5 4.5 1.5 204 chr3R 8090275 5` UTR CR44330 + chr3R 8090377 intergenic CR44330 + chr3R 8090479 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 D20-c2 1490 chr3R 8094406 8094421 chr3R 8099712 8099727 Transpac 5 5306 6.0 1.5 3.8 1.0 5321 chr3R 8094406 intron CG7900 + chr3R 8097066 intron CG7900 + chr3R 8099727 intron CG7900 + chr3R_5_8095001 chr3R_8095001 D20-c2 1491 chr3R 8101761 8101789 chr3R 8104846 8104874 G2 8 3085 3.5 2.5 3.0 2.0 3113 chr3R 8101761 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 D20-c2 1492 chr3R 8107385 8107421 chr3R 8107520 8107556 9 135 2.5 3.0 2.8 2.4 171 chr3R 8107385 intron puc + chr3R 8107470 intron puc + chr3R 8107556 intron puc + chr3R_9_8105001 chr3R_8105001 D20-c2 1493 chr3R 8207556 8207579 chr3R 8208402 8208425 F-element 14 846 2.0 4.5 3.2 3.3 869 chr3R 8207556 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208425 intergenic not near genes chr3R_14_8205001 chr3R_8205001 D20-c2 1494 chr3R 8293640 8293665 chr3R 8293721 8293746 9 79 1.0 2.5 1.8 3.2 106 chr3R 8293640 intergenic CG31463 +,CG9626 - chr3R 8293693 intergenic CG31463 +,CG9626 - chr3R 8293746 intergenic CG9626 -,CG31463 + chr3R_9_8290001 chr3R_8290001 D20-c2 1495 chr3R 8293992 8294022 chr3R 8294171 8294201 6 179 2.0 3.0 2.5 1.7 209 chr3R 8293992 3` UTR CG9626 - chr3R 8294096 3` UTR CG9626 - chr3R 8294201 3` UTR CG9626 - chr3R_6_8290001 chr3R_8290001 D20-c2 1496 chr3R 8339246 8339247 chr3R 21907534 21907536 20 13568289 15.0 20.0 17.5 1.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_20_15120001 chr3R_15120001 D20-c2 1497 chr3R 8403004 8403041 chr3R 8412171 8412208 roo 14 9167 4.5 5.5 5.0 2.3 9204 chr3R 8403004 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412208 intron CG45263 - chr3R_14_8405001 chr3R_8405001 D20-c2 1498 chr3R 8426194 8426198 chr3R 8426279 8426284 5 86 12.0 7.0 9.5 0.5 90 chr3R 8426194 intron CG45263 - chr3R 8426239 intron CG45263 - chr3R 8426284 intron CG45263 - chr3R_5_8425001 chr3R_8425001 D20-c2 1499 chr3R 8426203 8426224 chr3R 8426277 8426310 4 83 7.0 6.5 6.8 0.5 107 chr3R 8426203 intron CG45263 - chr3R 8426256 intron CG45263 - chr3R 8426310 intron CG45263 - chr3R_4_8425001 chr3R_8425001 D20-c2 1500 chr3R 8478082 8478109 chr3R 8478163 8478190 10 81 2.0 7.5 4.8 1.7 108 chr3R 8478082 intergenic CG45263 - chr3R 8478136 intergenic not near genes chr3R 8478190 intergenic not near genes chr3R_10_8475001 chr3R_8475001 D20-c2 1501 chr3R 8570477 8570506 chr3R 8575114 8575143 HMS-Beagle 6 4637 1.0 3.0 2.0 2.0 4666 chr3R 8570477 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575143 intergenic not near genes chr3R_6_8570001 chr3R_8570001 D20-c2 1502 chr3R 8576162 8576191 chr3R 8576333 8576363 13 172 3.0 2.5 2.8 3.4 201 chr3R 8576162 intergenic not near genes chr3R 8576262 intergenic not near genes chr3R 8576363 intergenic not near genes chr3R_13_8575001 chr3R_8575001 D20-c2 1503 chr3R 8601769 8601789 chr3R 8610923 8610943 roo 6 9154 6.0 3.0 4.5 1.1 9174 chr3R 8601769 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610943 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 D20-c2 1504 chr3R 8707355 8707385 chr3R 8709797 8709827 jockey 16 2442 4.5 5.0 4.8 2.8 2472 chr3R 8707355 intergenic not near genes chr3R 8708591 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_16_8705001 chr3R_8705001 D20-c2 1505 chr3R 8917892 8917911 chr3R 8917973 8917992 12 81 2.5 3.0 2.8 3.2 100 chr3R 8917892 intron pyd - chr3R 8917942 intron pyd - chr3R 8917992 intron pyd - chr3R_12_8915001 chr3R_8915001 D20-c2 1506 chr3R 8974638 8974664 chr3R 8974720 8974746 4 82 2.5 1.0 1.8 1.4 108 chr3R 8974638 intergenic not near genes chr3R 8974692 intergenic not near genes chr3R 8974746 intergenic not near genes chr3R_4_8970001 chr3R_8970001 D20-c2 1507 chr3R 9036714 9036739 chr3R 9036811 9036836 5 97 0.5 1.5 1.0 2.5 122 chr3R 9036714 intron neur - chr3R 9036775 intron neur - chr3R 9036836 intron neur - chr3R_5_9035001 chr3R_9035001 D20-c2 1508 chr3R 9066189 9066218 chr3R 9066265 9066295 8 77 2.5 4.5 3.5 1.8 106 chr3R 9066189 exon Ada + chr3R 9066242 exon Ada + chr3R 9066295 3` UTR Ada + chr3R_8_9065001 chr3R_9065001 D20-c2 1509 chr3R 9101836 9101872 chr3R 9101935 9101971 12 99 3.0 1.5 2.2 3.8 135 chr3R 9101836 intron pum - chr3R 9101904 intron pum - chr3R 9101971 intron pum - chr3R_12_9100001 chr3R_9100001 D20-c2 1510 chr3R 9108873 9108883 chr3R 9108950 9108960 4 77 5.0 3.5 4.2 0.8 87 chr3R 9108873 intron pum - chr3R 9108916 intron pum - chr3R 9108960 intron pum - chr3R_4_9105001 chr3R_9105001 D20-c2 1511 chr3R 9141141 9141173 chr3R 9141226 9141258 7 85 3.0 3.0 3.0 1.8 117 chr3R 9141141 intron pum - chr3R 9141200 intron pum - chr3R 9141258 intron pum - chr3R_7_9140001 chr3R_9140001 D20-c2 1512 chr3R 9143041 9143055 chr3R 9143183 9143197 4 142 1.5 4.0 2.8 1.1 156 chr3R 9143041 intron pum - chr3R 9143119 intron pum - chr3R 9143197 intron pum - chr3R_4_9140001 chr3R_9140001 D20-c2 1513 chr3R 9195363 9195385 chr3R 9195464 9195486 5 100 2.5 3.5 3.0 1.2 123 chr3R 9195363 intron pum - chr3R 9195424 intron pum - chr3R 9195486 intron pum - chr3R_5_9195001 chr3R_9195001 D20-c2 1514 chr3R 9214795 9214823 chr3R 9214911 9214939 7 115 2.0 1.5 1.8 2.5 144 chr3R 9214795 intron pum - chr3R 9214867 intron pum - chr3R 9214939 intron pum - chr3R_7_9210001 chr3R_9210001 D20-c2 1515 chr3R 9278777 9278810 chr3R 9284038 9284071 Rt1a 19 5260 3.5 6.0 4.8 3.3 5294 chr3R 9278777 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284071 intergenic not near genes chr3R_19_9280001 chr3R_9280001 D20-c2 1516 chr3R 9304529 9304535 chr3R 9311817 9311823 Stalker4 4 7288 9.0 2.0 5.5 0.6 7294 chr3R 9304529 intron CG8861 - chr3R 9308176 intron CG8861 - chr3R 9311823 intron CG8861 - chr3R_4_9305001 chr3R_9305001 D20-c2 1517 chr3R 9319575 9319606 chr3R 9320011 9320042 jockey 12 436 2.0 4.0 3.0 3.0 467 chr3R 9319575 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_12_9315001 chr3R_9315001 D20-c2 1518 chr3R 9361828 9361841 chr3R 9362070 9362083 pogo 6 242 1.0 6.5 3.8 1.2 255 chr3R 9361828 3` UTR CG45050 + chr3R 9361956 3` UTR CG45050 + chr3R 9362083 3` UTR CG45050 + chr3R_6_9360001 chr3R_9360001 D20-c2 1519 chr3R 9382814 9382848 chr3R 9382940 9382974 7 126 2.0 2.5 2.2 2.2 160 chr3R 9382814 intron FER - chr3R 9382894 intron FER - chr3R 9382974 intron FER - chr3R_7_9380001 chr3R_9380001 D20-c2 1520 chr3R 9434699 9434725 chr3R 9434787 9434813 8 88 4.0 3.5 3.8 1.7 114 chr3R 9434699 intron ps + chr3R 9434756 intron ps + chr3R 9434813 intron ps + chr3R_8_9430001 chr3R_9430001 D20-c2 1521 chr3R 9582305 9582336 chr3R 9582389 9582419 8 81 1.5 1.5 1.5 3.2 114 chr3R 9582305 intron CG8301 + chr3R 9582362 intron CG8301 + chr3R 9582419 intron CG8301 + chr3R_8_9580001 chr3R_9580001 D20-c2 1522 chr3R 9611879 9611905 chr3R 9611962 9611988 4 83 2.0 0.0 1.0 2.0 109 chr3R 9611879 intron CG8312 + chr3R 9611934 intron CG8312 + chr3R 9611988 intron CG8312 + chr3R_4_9610001 chr3R_9610001 D20-c2 1523 chr3R 9620954 9620956 chr3R 21907535 21907536 5 12286580 13.5 20.0 16.8 0.3 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 D20-c2 1524 chr3R 9699972 9700002 chr3R 9700062 9700092 1360 16 90 4.5 4.5 4.5 2.9 120 chr3R 9699972 intron Unc-115a - chr3R 9700032 intron Unc-115a - chr3R 9700092 intron Unc-115a - chr3R_16_9700001 chr3R_9700001 D20-c2 1525 chr3R 9829407 9829436 chr3R 9829493 9829522 11 86 2.0 3.5 2.8 2.9 115 chr3R 9829407 intron Teh1 - chr3R 9829464 intron Teh1 - chr3R 9829522 intron Teh1 - chr3R_11_9825001 chr3R_9825001 D20-c2 1526 chr3R 9997420 9997456 chr3R 9997507 9997543 22 85 4.0 5.5 4.8 3.8 123 chr3R 9997420 5` UTR Spn85F + chr3R 9997482 5` UTR Spn85F + chr3R 9997543 exon Spn85F + chr3R_22_9995001 chr3R_9995001 D20-c2 1527 chr3R 10062254 10062275 chr3R 10062378 10062399 11 124 1.0 2.5 1.8 3.9 145 chr3R 10062254 intergenic CR45205 -,CG33630 + chr3R 10062326 intergenic CG33630 +,CR45205 - chr3R 10062399 intergenic CG33630 +,CR45205 - chr3R_11_10060001 chr3R_10060001 D20-c2 1528 chr3R 10073772 10073801 chr3R 10073882 10073911 10 110 2.0 1.5 1.8 3.6 139 chr3R 10073772 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073911 exon CG5361 - chr3R_10_10070001 chr3R_10070001 D20-c2 1529 chr3R 10231779 10231807 chr3R 10237357 10237385 mdg3 9 5578 4.0 5.5 4.8 1.6 5606 chr3R 10231779 intron CG42795 + chr3R 10234582 intron CG42795 + chr3R 10237385 intron CG42795 + chr3R_9_10230001 chr3R_10230001 D20-c2 1530 chr3R 10275567 10275585 chr3R 10275645 10275663 5 78 2.0 5.0 3.5 1.1 96 chr3R 10275567 intron CG43143 + chr3R 10275615 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_5_10275001 chr3R_10275001 D20-c2 1531 chr3R 10306951 10306986 chr3R 10312209 10312244 14 5258 52.5 26.0 39.2 0.3 5293 chr3R 10306951 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312244 3` UTR Bruce - chr3R_14_10305001 chr3R_10305001 D20-c2 1532 chr3R 10403032 10403063 chr3R 10403114 10403145 7 82 1.5 3.0 2.2 2.2 113 chr3R 10403032 3` UTR CG6325 - chr3R 10403088 3` UTR CG6325 - chr3R 10403145 3` UTR CG6325 - chr3R_7_10400001 chr3R_10400001 D20-c2 1533 chr3R 10531866 10531899 chr3R 10531948 10531981 9 82 4.5 1.0 2.8 2.4 115 chr3R 10531866 intron hth - chr3R 10531924 intron hth - chr3R 10531981 intron hth - chr3R_9_10530001 chr3R_10530001 D20-c2 1534 chr3R 10593426 10593461 chr3R 10593514 10593546 7 84 3.0 1.5 2.2 2.2 120 chr3R 10593426 intron hth - chr3R 10593486 intron hth - chr3R 10593546 intron hth - chr3R_7_10590001 chr3R_10590001 D20-c2 1535 chr3R 10724957 10724983 chr3R 10725036 10725062 8 79 1.5 3.5 2.5 2.3 105 chr3R 10724957 intergenic not near genes chr3R 10725010 intergenic not near genes chr3R 10725062 intergenic not near genes chr3R_8_10725001 chr3R_10725001 D20-c2 1536 chr3R 10727640 10727679 chr3R 10727721 10727749 22 80 2.5 3.0 2.8 5.8 109 chr3R 10727640 intergenic not near genes chr3R 10727694 intergenic not near genes chr3R 10727749 intergenic not near genes chr3R_22_10725001 chr3R_10725001 D20-c2 1537 chr3R 10731000 10731022 chr3R 10731167 10731189 7 167 0.5 3.5 2.0 2.3 189 chr3R 10731000 intergenic not near genes chr3R 10731094 intergenic not near genes chr3R 10731189 intergenic not near genes chr3R_7_10730001 chr3R_10730001 D20-c2 1538 chr3R 10804170 10804202 chr3R 10811703 10811735 17.6 10 7533 2.5 1.0 1.8 3.6 7565 chr3R 10804170 intergenic CG14692 - chr3R 10807952 intergenic not near genes chr3R 10811735 3` UTR CG14693 - chr3R_10_10805001 chr3R_10805001 D20-c2 1539 chr3R 10954131 10954164 chr3R 10954222 10954255 13 91 2.0 3.0 2.5 3.7 124 chr3R 10954131 intergenic not near genes chr3R 10954193 intergenic not near genes chr3R 10954255 intergenic not near genes chr3R_13_10950001 chr3R_10950001 D20-c2 1540 chr3R 10963560 10963589 chr3R 10963655 10963684 6 95 2.0 4.0 3.0 1.5 124 chr3R 10963560 intergenic not near genes chr3R 10963622 intergenic not near genes chr3R 10963684 intergenic not near genes chr3R_6_10960001 chr3R_10960001 D20-c2 1541 chr3R 11085462 11085488 chr3R 11085540 11085566 13 78 0.0 1.5 0.8 7.2 104 chr3R 11085462 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_13_11085001 chr3R_11085001 D20-c2 1542 chr3R 11099657 11099683 chr3R 11099790 11099816 10 133 4.5 1.5 3.0 2.5 159 chr3R 11099657 intergenic not near genes chr3R 11099736 intergenic not near genes chr3R 11099816 intergenic not near genes chr3R_10_11095001 chr3R_11095001 D20-c2 1543 chr3R 11102323 11102354 chr3R 11102405 11102436 9 80 2.5 3.0 2.8 2.4 113 chr3R 11102323 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_9_11100001 chr3R_11100001 D20-c2 1544 chr3R 11151670 11151697 chr3R 11156562 11156589 4 4892 18.5 12.5 15.5 0.2 4919 chr3R 11151670 3` UTR Ugt86Di - chr3R 11154130 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156589 intergenic Ugt86Dc + chr3R_4_11150001 chr3R_11150001 D20-c2 1545 chr3R 11174604 11174614 chr3R 11175319 11175329 4 715 23.5 30.0 26.8 0.1 725 chr3R 11174604 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175329 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 D20-c2 1546 chr3R 11197983 11198007 chr3R 11198083 11198107 7 100 3.0 2.0 2.5 2.0 124 chr3R 11197983 intron cu + chr3R 11198045 intron cu + chr3R 11198107 intron cu + chr3R_7_11195001 chr3R_11195001 D20-c2 1547 chr3R 11259683 11259719 chr3R 11259776 11259812 17 93 1.0 0.5 0.8 9.4 129 chr3R 11259683 intergenic not near genes chr3R 11259748 intergenic not near genes chr3R 11259812 intergenic not near genes chr3R_17_11255001 chr3R_11255001 D20-c2 1548 chr3R 11263498 11263528 chr3R 11263582 11263612 7 84 1.0 1.0 1.0 3.5 114 chr3R 11263498 intergenic not near genes chr3R 11263555 intergenic not near genes chr3R 11263612 intergenic not near genes chr3R_7_11260001 chr3R_11260001 D20-c2 1549 chr3R 11379240 11379269 chr3R 11388396 11388425 roo 8 9156 2.5 9.0 5.8 1.2 9185 chr3R 11379240 intron pros + chr3R 11383832 intron pros + chr3R 11388425 intron pros + chr3R_8_11380001 chr3R_11380001 D20-c2 1550 chr3R 11442338 11442368 chr3R 11442524 11442554 11 186 2.5 2.5 2.5 3.1 216 chr3R 11442338 intron,intron sals -,CG17230 + chr3R 11442446 intron,intron sals -,CG17230 + chr3R 11442554 intron,intron sals -,CG17230 + chr3R_11_11440001 chr3R_11440001 D20-c2 1551 chr3R 11476375 11476397 chr3R 11476464 11476486 11 89 1.5 6.0 3.8 2.3 111 chr3R 11476375 intergenic not near genes chr3R 11476430 intergenic not near genes chr3R 11476486 intergenic not near genes chr3R_11_11475001 chr3R_11475001 D20-c2 1552 chr3R 11545888 11545906 chr3R 11546001 11546024 7 117 1.5 1.5 1.5 2.8 136 chr3R 11545888 intergenic not near genes chr3R 11545956 intergenic not near genes chr3R 11546024 intergenic not near genes chr3R_7_11545001 chr3R_11545001 D20-c2 1553 chr3R 11694723 11694750 chr3R 11694817 11694844 10 94 3.0 0.0 1.5 4.0 121 chr3R 11694723 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_10_11690001 chr3R_11690001 D20-c2 1554 chr3R 11695738 11695770 chr3R 11695820 11695852 11 81 1.0 3.5 2.2 3.4 114 chr3R 11695738 intergenic not near genes chr3R 11695795 intergenic not near genes chr3R 11695852 intergenic not near genes chr3R_11_11695001 chr3R_11695001 D20-c2 1555 chr3R 11757738 11757766 chr3R 11757840 11757868 8 102 4.5 4.0 4.2 1.5 130 chr3R 11757738 intron Lk6 - chr3R 11757803 intron Lk6 - chr3R 11757868 intron Lk6 - chr3R_8_11755001 chr3R_11755001 D20-c2 1556 chr3R 11841058 11841094 chr3R 11846250 11846278 BS 18 5192 4.5 4.0 4.2 3.5 5220 chr3R 11841058 intron CG6959 - chr3R 11843668 intron CG6959 - chr3R 11846278 intron CG6959 - chr3R_18_11840001 chr3R_11840001 D20-c2 1557 chr3R 11879342 11879376 chr3R 11885213 11885247 18 5872 56.0 44.0 50.0 0.4 5905 chr3R 11879342 exon sad + chr3R 11882294 exon CG6962 - chr3R 11885247 intron,exon CG31368 +,mthl5 - chr3R_18_11880001 chr3R_11880001 D20-c2 1558 chr3R 11920974 11921000 chr3R 11921072 11921098 13 98 2.5 6.5 4.5 2.4 124 chr3R 11920974 intron Cad87A - chr3R 11921036 intron Cad87A - chr3R 11921098 intron Cad87A - chr3R_13_11920001 chr3R_11920001 D20-c2 1559 chr3R 12022883 12022916 chr3R 12025061 12025094 pogo 13 2178 2.0 4.0 3.0 3.2 2211 chr3R 12022883 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025094 intergenic not near genes chr3R_13_12020001 chr3R_12020001 D20-c2 1560 chr3R 12064282 12064306 chr3R 12064365 12064389 4 83 1.5 2.0 1.8 1.4 107 chr3R 12064282 intergenic not near genes chr3R 12064336 intergenic not near genes chr3R 12064389 intergenic not near genes chr3R_4_12060001 chr3R_12060001 D20-c2 1561 chr3R 12102875 12102882 chr3R 12102977 12102984 4 102 11.0 7.0 9.0 0.4 109 chr3R 12102875 intron dpr17 + chr3R 12102930 intron dpr17 + chr3R 12102984 intron dpr17 + chr3R_4_12100001 chr3R_12100001 D20-c2 1562 chr3R 12149411 12149439 chr3R 12149497 12149525 9 86 1.0 5.0 3.0 2.2 114 chr3R 12149411 intron dpr15 - chr3R 12149468 intron dpr15 - chr3R 12149525 intron dpr15 - chr3R_9_12145001 chr3R_12145001 D20-c2 1563 chr3R 12170729 12170761 chr3R 12170837 12170869 22 108 3.0 5.0 4.0 4.4 140 chr3R 12170729 intergenic not near genes chr3R 12170799 intergenic not near genes chr3R 12170869 intergenic not near genes chr3R_22_12170001 chr3R_12170001 D20-c2 1564 chr3R 12175039 12175071 chr3R 12175243 12175275 9 204 2.0 1.5 1.8 3.2 236 chr3R 12175039 intergenic not near genes chr3R 12175157 intergenic not near genes chr3R 12175275 intergenic not near genes chr3R_9_12175001 chr3R_12175001 D20-c2 1565 chr3R 12202285 12202316 chr3R 12202394 12202426 17 110 1.0 3.5 2.2 5.3 141 chr3R 12202285 intergenic not near genes chr3R 12202356 intergenic not near genes chr3R 12202426 intergenic not near genes chr3R_17_12200001 chr3R_12200001 D20-c2 1566 chr3R 12214353 12214372 chr3R 12214445 12214464 10 92 3.0 8.0 5.5 1.5 111 chr3R 12214353 3` UTR CG4848 - chr3R 12214408 3` UTR CG4848 - chr3R 12214464 3` UTR CG4848 - chr3R_10_12210001 chr3R_12210001 D20-c2 1567 chr3R 12247142 12247172 chr3R 12247228 12247258 8 86 2.5 1.5 2.0 2.7 116 chr3R 12247142 intergenic not near genes chr3R 12247200 intergenic not near genes chr3R 12247258 intergenic not near genes chr3R_8_12245001 chr3R_12245001 D20-c2 1568 chr3R 12267855 12267889 chr3R 12267936 12267970 6 81 2.5 2.5 2.5 1.7 115 chr3R 12267855 intron svp + chr3R 12267912 intron svp + chr3R 12267970 intron svp + chr3R_6_12265001 chr3R_12265001 D20-c2 1569 chr3R 12290858 12290890 chr3R 12290950 12290982 14 92 3.0 6.0 4.5 2.5 124 chr3R 12290858 intron svp + chr3R 12290920 intron svp + chr3R 12290982 intron svp + chr3R_14_12290001 chr3R_12290001 D20-c2 1570 chr3R 12314225 12314259 chr3R 12314340 12314374 13 114 4.0 4.0 4.0 2.6 149 chr3R 12314225 intergenic not near genes chr3R 12314300 intergenic not near genes chr3R 12314374 intergenic not near genes chr3R_13_12310001 chr3R_12310001 D20-c2 1571 chr3R 12344128 12344154 chr3R 12344206 12344232 5 78 3.0 0.5 1.8 1.8 104 chr3R 12344128 intergenic not near genes chr3R 12344180 intergenic not near genes chr3R 12344232 intergenic not near genes chr3R_5_12340001 chr3R_12340001 D20-c2 1572 chr3R 12392891 12392901 chr3R 12392992 12393002 8 100 7.0 10.5 8.8 0.8 111 chr3R 12392891 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392946 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393002 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_8_12390001 chr3R_12390001 D20-c2 1573 chr3R 12436453 12436483 chr3R 12436541 12436571 20 86 2.0 10.0 6.0 2.9 118 chr3R 12436453 exon Desat2 + chr3R 12436512 exon Desat2 + chr3R 12436571 exon Desat2 + chr3R_20_12435001 chr3R_12435001 D20-c2 1574 chr3R 12542402 12542431 chr3R 12542486 12542515 8 84 2.5 2.5 2.5 2.3 113 chr3R 12542402 intron Octbeta3R - chr3R 12542458 intron Octbeta3R - chr3R 12542515 intron Octbeta3R - chr3R_8_12540001 chr3R_12540001 D20-c2 1575 chr3R 12599370 12599407 chr3R 12599454 12599491 12 84 3.5 5.5 4.5 2.2 121 chr3R 12599370 intergenic not near genes chr3R 12599430 intergenic not near genes chr3R 12599491 intergenic not near genes chr3R_12_12595001 chr3R_12595001 D20-c2 1576 chr3R 12602396 12602416 chr3R 12602475 12602495 9 78 4.5 4.5 4.5 1.6 99 chr3R 12602396 intergenic not near genes chr3R 12602446 intergenic not near genes chr3R 12602495 intergenic not near genes chr3R_9_12600001 chr3R_12600001 D20-c2 1577 chr3R 12666767 12666799 chr3R 12666895 12666927 4 128 3.0 2.0 2.5 1.1 160 chr3R 12666767 intron CG14395 + chr3R 12666847 intron CG14395 + chr3R 12666927 intron CG14395 + chr3R_4_12665001 chr3R_12665001 D20-c2 1578 chr3R 12733479 12733509 chr3R 12733557 12733587 17 76 2.5 5.0 3.8 3.5 108 chr3R 12733479 intergenic not near genes chr3R 12733533 intergenic not near genes chr3R 12733587 intergenic not near genes chr3R_17_12730001 chr3R_12730001 D20-c2 1579 chr3R 12810050 12810087 chr3R 12810128 12810164 13 76 4.0 6.5 5.2 2.1 114 chr3R 12810050 intergenic not near genes chr3R 12810107 intergenic not near genes chr3R 12810164 intergenic not near genes chr3R_13_12810001 chr3R_12810001 D20-c2 1580 chr3R 12866486 12866513 chr3R 12866638 12866665 5 152 2.5 2.0 2.2 1.6 179 chr3R 12866486 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_5_12865001 chr3R_12865001 D20-c2 1581 chr3R 12886923 12886953 chr3R 12887009 12887039 15 86 2.5 5.0 3.8 3.1 116 chr3R 12886923 intergenic not near genes chr3R 12886981 intergenic not near genes chr3R 12887039 intergenic not near genes chr3R_15_12885001 chr3R_12885001 D20-c2 1582 chr3R 12920150 12920186 chr3R 12925354 12925390 copia 19 5204 4.5 3.0 3.8 4.0 5240 chr3R 12920150 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925390 intron beat-Vb + chr3R_19_12920001 chr3R_12920001 D20-c2 1583 chr3R 12926728 12926755 chr3R 12926840 12926851 6 109 2.5 2.5 2.5 1.7 123 chr3R 12926728 intron beat-Vb + chr3R 12926790 intron beat-Vb + chr3R 12926851 intron beat-Vb + chr3R_6_12925001 chr3R_12925001 D20-c2 1584 chr3R 13027005 13027031 chr3R 13027087 13027113 9 82 5.0 3.0 4.0 1.8 108 chr3R 13027005 3` UTR CG12360 - chr3R 13027059 3` UTR CG12360 - chr3R 13027113 3` UTR CG12360 - chr3R_9_13025001 chr3R_13025001 D20-c2 1585 chr3R 13059960 13059969 chr3R 13060156 13060165 5 196 4.5 1.5 3.0 1.2 205 chr3R 13059960 intron sim + chr3R 13060062 intron sim + chr3R 13060165 intron sim + chr3R_5_13060001 chr3R_13060001 D20-c2 1586 chr3R 13120770 13120784 chr3R 13120848 13120862 6 78 4.5 3.0 3.8 1.2 92 chr3R 13120770 intron timeout + chr3R 13120816 intron timeout + chr3R 13120862 intron timeout + chr3R_6_13120001 chr3R_13120001 D20-c2 1587 chr3R 13135826 13135854 chr3R 13138002 13138030 pogo 9 2176 5.5 2.5 4.0 1.8 2204 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138030 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13135001 chr3R_13135001 D20-c2 1588 chr3R 13143046 13143063 chr3R 13148615 13148626 mdg3 5 5569 4.0 7.5 5.8 0.7 5580 chr3R 13143046 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148626 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 D20-c2 1589 chr3R 13195949 13195984 chr3R 13196045 13196080 11 96 2.0 1.0 1.5 4.4 131 chr3R 13195949 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196080 intergenic not near genes chr3R_11_13195001 chr3R_13195001 D20-c2 1590 chr3R 13205407 13205427 chr3R 13205489 13205509 6 82 5.0 4.0 4.5 1.1 102 chr3R 13205407 intergenic not near genes chr3R 13205458 intergenic not near genes chr3R 13205509 intergenic not near genes chr3R_6_13205001 chr3R_13205001 D20-c2 1591 chr3R 13302908 13302935 chr3R 13303040 13303067 14 131 6.5 3.0 4.8 2.4 159 chr3R 13302908 exon CG32473 + chr3R 13302988 exon CG32473 + chr3R 13303067 exon CG32473 + chr3R_14_13300001 chr3R_13300001 D20-c2 1592 chr3R 13314105 13314119 chr3R 13318894 13318908 Doc 7 4789 3.5 6.0 4.8 1.2 4803 chr3R 13314105 intergenic not near genes chr3R 13316506 intergenic not near genes chr3R 13318908 intergenic CG45080 - chr3R_7_13315001 chr3R_13315001 D20-c2 1593 chr3R 13323672 13323689 chr3R 13323869 13323892 4 202 1.0 3.5 2.2 1.2 220 chr3R 13323672 intergenic not near genes chr3R 13323782 intergenic not near genes chr3R 13323892 intergenic not near genes chr3R_4_13320001 chr3R_13320001 D20-c2 1594 chr3R 13336522 13336534 chr3R 13337749 13337761 8 1227 23.0 30.5 26.8 0.3 1239 chr3R 13336522 intergenic not near genes chr3R 13337142 intergenic not near genes chr3R 13337761 intergenic not near genes chr3R_8_13335001 chr3R_13335001 D20-c2 1595 chr3R 13364633 13364653 chr3R 13364718 13364737 6 85 3.0 0.0 1.5 2.4 104 chr3R 13364633 intron poly - chr3R 13364685 intron poly - chr3R 13364737 intron poly - chr3R_6_13360001 chr3R_13360001 D20-c2 1596 chr3R 13420976 13420991 chr3R 13421072 13421087 8 96 6.5 10.5 8.5 0.8 111 chr3R 13420976 exon Ir87a + chr3R 13421032 exon Ir87a + chr3R 13421087 exon Ir87a + chr3R_8_13420001 chr3R_13420001 D20-c2 1597 chr3R 13435389 13435420 chr3R 13435565 13435595 8 176 1.0 4.0 2.5 2.3 206 chr3R 13435389 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435595 intergenic not near genes chr3R_8_13435001 chr3R_13435001 D20-c2 1598 chr3R 13439578 13439601 chr3R 13439661 13439684 9 83 1.0 2.5 1.8 3.2 106 chr3R 13439578 intergenic CR42756 - chr3R 13439631 intergenic CR42756 - chr3R 13439684 intergenic CR42756 - chr3R_9_13435001 chr3R_13435001 D20-c2 1599 chr3R 13574597 13574604 chr3R 13574675 13574682 4 78 6.0 12.0 9.0 0.4 85 chr3R 13574597 intergenic CR43848 + chr3R 13574640 intergenic CR43848 + chr3R 13574682 intergenic CR43848 + chr3R_4_13570001 chr3R_13570001 D20-c2 1600 chr3R 13599060 13599090 chr3R 13599141 13599171 5 81 2.5 0.5 1.5 2.0 111 chr3R 13599060 intergenic not near genes chr3R 13599116 intergenic not near genes chr3R 13599171 intergenic not near genes chr3R_5_13595001 chr3R_13595001 D20-c2 1601 chr3R 13603056 13603077 chr3R 13603148 13603169 7 92 1.5 2.5 2.0 2.3 113 chr3R 13603056 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603169 intergenic not near genes chr3R_7_13600001 chr3R_13600001 D20-c2 1602 chr3R 13625710 13625723 chr3R 13625792 13625805 4 82 0.0 4.5 2.2 1.2 95 chr3R 13625710 intergenic not near genes chr3R 13625758 intergenic not near genes chr3R 13625805 intergenic not near genes chr3R_4_13625001 chr3R_13625001 D20-c2 1603 chr3R 13659720 13659847 chr3R 13659827 13659937 10 98 0.0 0.0 0.0 10.0 217 chr3R 13659720 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659937 intron Hrb87F - chr3R_10_13655001 chr3R_13655001 D20-c2 1604 chr3R 13693028 13693028 chr3R 21907532 21907536 12 8214507 13.5 19.5 16.5 0.7 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 D20-c2 1605 chr3R 13803898 13803903 chr3R 13804120 13804125 5 222 0.0 0.0 0.0 5.0 227 chr3R 13803898 intergenic not near genes chr3R 13804012 intergenic not near genes chr3R 13804125 intergenic not near genes chr3R_5_13800001 chr3R_13800001 D20-c2 1606 chr3R 13828844 13828870 chr3R 13828931 13828957 9 87 2.5 0.0 1.2 4.1 113 chr3R 13828844 intergenic CR43300 + chr3R 13828900 intergenic CR43300 + chr3R 13828957 intergenic not near genes chr3R_9_13825001 chr3R_13825001 D20-c2 1607 chr3R 13863677 13863713 chr3R 13863766 13863802 10 89 1.5 3.0 2.2 3.1 125 chr3R 13863677 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863802 intergenic not near genes chr3R_10_13860001 chr3R_13860001 D20-c2 1608 chr3R 13885432 13885437 chr3R 13885507 13885515 5 77 2.5 6.0 4.2 1.0 83 chr3R 13885432 intergenic not near genes chr3R 13885474 intergenic not near genes chr3R 13885515 intergenic not near genes chr3R_5_13885001 chr3R_13885001 D20-c2 1609 chr3R 13974532 13974536 chr3R 13974610 13974614 5 78 0.0 2.5 1.2 2.3 82 chr3R 13974532 intron,5` UTR rdx -,CR43460 + chr3R 13974573 intron,5` UTR rdx -,CR43460 + chr3R 13974614 intron,5` UTR rdx -,CR43460 + chr3R_5_13970001 chr3R_13970001 D20-c2 1610 chr3R 13975369 13975406 chr3R 13975450 13975487 8 81 5.0 2.5 3.8 1.7 118 chr3R 13975369 intron rdx - chr3R 13975428 intron rdx - chr3R 13975487 intron rdx - chr3R_8_13975001 chr3R_13975001 D20-c2 1611 chr3R 14021647 14021679 chr3R 14023465 14023497 S-element 13 1817 2.5 2.0 2.2 4.1 1850 chr3R 14021647 intron rdx - chr3R 14022572 intron rdx - chr3R 14023497 intron rdx - chr3R_13_14020001 chr3R_14020001 D20-c2 1612 chr3R 14070133 14070144 chr3R 14070215 14070226 5 82 3.5 5.0 4.2 1.0 93 chr3R 14070133 intron foxo + chr3R 14070180 intron foxo + chr3R 14070226 intron foxo + chr3R_5_14070001 chr3R_14070001 D20-c2 1613 chr3R 5045132 5045159 chr3R 14086780 14086807 6 9041650 25.5 12.0 18.8 0.3 9041675 chr3R 5045132 intergenic CR43635 - chr3R 9565970 3` UTR Vps45 + chr3R 14086807 intron foxo + chr3R_6_9565001 chr3R_9565001 D20-c2 1614 chr3R 14174963 14174986 chr3R 14175049 14175074 6 87 1.5 2.5 2.0 2.0 111 chr3R 14174963 3` UTR Dop1R1 - chr3R 14175018 3` UTR Dop1R1 - chr3R 14175074 3` UTR Dop1R1 - chr3R_6_14175001 chr3R_14175001 D20-c2 1615 chr3R 14180811 14180835 chr3R 14185577 14185601 F-element 6 4766 4.0 4.5 4.2 1.2 4790 chr3R 14180811 intron Dop1R1 - chr3R 14183206 intron Dop1R1 - chr3R 14185601 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 D20-c2 1616 chr3R 14246389 14246418 chr3R 14247886 14247915 jockey 13 1496 6.0 3.5 4.8 2.2 1526 chr3R 14246389 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247915 intergenic not near genes chr3R_13_14245001 chr3R_14245001 D20-c2 1617 chr3R 14319060 14319093 chr3R 14319143 14319176 7 83 2.0 1.0 1.5 2.8 116 chr3R 14319060 3` UTR pr-set7 + chr3R 14319118 3` UTR pr-set7 + chr3R 14319176 3` UTR pr-set7 + chr3R_7_14315001 chr3R_14315001 D20-c2 1618 chr3R 14372624 14372659 chr3R 14372715 14372750 19 91 1.5 5.5 3.5 4.2 126 chr3R 14372624 5` UTR NK7.1 - chr3R 14372687 5` UTR NK7.1 - chr3R 14372750 5` UTR NK7.1 - chr3R_19_14370001 chr3R_14370001 D20-c2 1619 chr3R 14458895 14458913 chr3R 14458977 14458995 11 82 0.0 3.0 1.5 4.4 100 chr3R 14458895 intron cv-c - chr3R 14458945 intron cv-c - chr3R 14458995 intron cv-c - chr3R_11_14455001 chr3R_14455001 D20-c2 1620 chr3R 14462118 14462134 chr3R 14462264 14462280 8 146 0.5 3.0 1.8 2.9 162 chr3R 14462118 intron cv-c - chr3R 14462199 intron cv-c - chr3R 14462280 intron cv-c - chr3R_8_14460001 chr3R_14460001 D20-c2 1621 chr3R 14469798 14469829 chr3R 14469875 14469906 20 77 4.0 4.5 4.2 3.8 108 chr3R 14469798 intron cv-c - chr3R 14469852 intron cv-c - chr3R 14469906 intron cv-c - chr3R_20_14465001 chr3R_14465001 D20-c2 1622 chr3R 14527403 14527414 chr3R 14527481 14527492 4 78 6.0 4.5 5.2 0.6 89 chr3R 14527403 intron Pde6 - chr3R 14527448 intron Pde6 - chr3R 14527492 intron Pde6 - chr3R_4_14525001 chr3R_14525001 D20-c2 1623 chr3R 14553175 14553211 chr3R 14553307 14553343 10 132 3.0 4.5 3.8 2.1 168 chr3R 14553175 intron Pde6 - chr3R 14553259 intron Pde6 - chr3R 14553343 intron Pde6 - chr3R_10_14550001 chr3R_14550001 D20-c2 1624 chr3R 14597623 14597643 chr3R 14597778 14597799 8 154 2.0 2.5 2.2 2.5 176 chr3R 14597623 intron stumps + chr3R 14597711 intron stumps + chr3R 14597799 intron stumps + chr3R_8_14595001 chr3R_14595001 D20-c2 1625 chr3R 14704391 14704418 chr3R 14704468 14704496 10 78 2.0 4.0 3.0 2.5 105 chr3R 14704391 intron kibra - chr3R 14704444 intron kibra - chr3R 14704496 intron kibra - chr3R_10_14700001 chr3R_14700001 D20-c2 1626 chr3R 14766194 14766219 chr3R 14766351 14766376 12 157 2.0 5.5 3.8 2.5 182 chr3R 14766194 intron jvl + chr3R 14766285 intron jvl + chr3R 14766376 intron jvl + chr3R_12_14765001 chr3R_14765001 D20-c2 1627 chr3R 14821617 14821637 chr3R 14821767 14821787 5 150 4.5 2.0 3.2 1.2 170 chr3R 14821617 intron btsz - chr3R 14821702 intron btsz - chr3R 14821787 intron btsz - chr3R_5_14820001 chr3R_14820001 D20-c2 1628 chr3R 14833476 14833512 chr3R 14834283 14834319 18 806 2.5 5.0 3.8 3.8 843 chr3R 14833476 intron btsz - chr3R 14833898 intron btsz - chr3R 14834319 intron btsz - chr3R_18_14830001 chr3R_14830001 D20-c2 1629 chr3R 14880742 14880771 chr3R 14880959 14880974 6 214 22.0 23.5 22.8 0.3 232 chr3R 14880742 exon CG3631 + chr3R 14880858 intron CG3631 + chr3R 14880974 exon CG3631 + chr3R_6_14880001 chr3R_14880001 D20-c2 1630 chr3R 14881479 14881776 chr3R 14881593 14881886 17 111 22.0 25.0 23.5 0.7 407 chr3R 14881479 exon CG3631 + chr3R 14881682 exon CG3631 + chr3R 14881886 exon CG3631 + chr3R_17_14880001 chr3R_14880001 D20-c2 1631 chr3R 14898474 14898502 chr3R 14898595 14898623 8 121 2.5 2.5 2.5 2.3 149 chr3R 14898474 intergenic Nup93-2 -,CG3817 + chr3R 14898548 intergenic Nup93-2 -,CG3817 + chr3R 14898623 intergenic CG3817 +,Nup93-2 - chr3R_8_14895001 chr3R_14895001 D20-c2 1632 chr3R 14923726 14923746 chr3R 14923804 14923824 15 78 3.0 8.5 5.8 2.2 98 chr3R 14923726 3` UTR CR45598 - chr3R 14923775 intergenic CR45598 - chr3R 14923824 intergenic CR45598 - chr3R_15_14920001 chr3R_14920001 D20-c2 1633 chr3R 14968362 14968394 chr3R 14968445 14968477 16 83 1.5 1.5 1.5 6.4 115 chr3R 14968362 intergenic not near genes chr3R 14968420 intergenic not near genes chr3R 14968477 intergenic not near genes chr3R_16_14965001 chr3R_14965001 D20-c2 1634 chr3R 15026330 15026342 chr3R 15026417 15026429 4 87 2.0 3.5 2.8 1.1 99 chr3R 15026330 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026429 intergenic not near genes chr3R_4_15025001 chr3R_15025001 D20-c2 1635 chr3R 15041400 15041419 chr3R 15045185 15045204 Doc 9 3785 0.0 1.0 0.5 6.0 3804 chr3R 15041400 intergenic not near genes chr3R 15043302 intergenic not near genes chr3R 15045204 intergenic not near genes chr3R_9_15040001 chr3R_15040001 D20-c2 1636 chr3R 15059277 15059480 chr3R 15059472 15059568 BS 7 103 0.0 0.0 0.0 7.0 291 chr3R 15059277 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_7_15055001 chr3R_15055001 D20-c2 1637 chr3R 15078342 15078368 chr3R 15078423 15078449 19 81 3.0 3.0 3.0 4.8 107 chr3R 15078342 intergenic CG6974 - chr3R 15078396 intergenic CG6974 - chr3R 15078449 intergenic CG6974 - chr3R_19_15075001 chr3R_15075001 D20-c2 1638 chr3R 15079805 15079838 chr3R 15080047 15080080 pogo 6 242 2.5 1.5 2.0 2.0 275 chr3R 15079805 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080080 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 D20-c2 1639 chr3R 15084150 15084176 chr3R 15084283 15084309 13 133 2.5 5.5 4.0 2.6 159 chr3R 15084150 intron CG6966 - chr3R 15084230 intron CG6966 - chr3R 15084309 intron CG6966 - chr3R_13_15080001 chr3R_15080001 D20-c2 1640 chr3R 15087161 15087180 chr3R 15087241 15087260 5 80 2.5 0.5 1.5 2.0 99 chr3R 15087161 intron CG6966 - chr3R 15087210 intron CG6966 - chr3R 15087260 intron CG6966 - chr3R_5_15085001 chr3R_15085001 D20-c2 1641 chr3R 15102495 15102529 chr3R 15109753 15109785 412 8 7257 1.5 1.5 1.5 3.2 7290 chr3R 15102495 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109785 intron CG42788 - chr3R_8_15105001 chr3R_15105001 D20-c2 1642 chr3R 15132058 15132080 chr3R 15135119 15135141 Juan 16 3061 11.5 14.0 12.8 1.2 3083 chr3R 15132058 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_16_15130001 chr3R_15130001 D20-c2 1643 chr3R 15130867 15130884 chr3R 15141227 15141244 6 10360 18.5 37.0 27.8 0.2 10377 chr3R 15130867 intron CG42788 - chr3R 15136056 exon CG6912 - chr3R 15141244 exon CG3987 + chr3R_6_15135001 chr3R_15135001 D20-c2 1644 chr3R 15160334 15160355 chr3R 15160435 15160456 5 101 3.0 4.0 3.5 1.1 122 chr3R 15160334 intron Gyc88E + chr3R 15160395 intron Gyc88E + chr3R 15160456 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 D20-c2 1645 chr3R 15162547 15162563 chr3R 15167316 15167332 F-element 5 4769 6.0 0.5 3.2 1.2 4785 chr3R 15162547 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167332 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 D20-c2 1646 chr3R 15286988 15286989 chr3R 21907534 21907534 4 6620546 15.5 20.0 17.8 0.2 6620546 chr3R 15286988 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 D20-c2 1647 chr3R 15462907 15462940 chr3R 15462994 15463028 10 88 4.0 3.0 3.5 2.2 121 chr3R 15462907 intron AdamTS-A - chr3R 15462968 intron AdamTS-A - chr3R 15463028 intron AdamTS-A - chr3R_10_15460001 chr3R_15460001 D20-c2 1648 chr3R 15592890 15592923 chr3R 15592975 15593008 4 84 2.0 2.0 2.0 1.3 118 chr3R 15592890 intergenic not near genes chr3R 15592949 intergenic not near genes chr3R 15593008 intergenic not near genes chr3R_4_15590001 chr3R_15590001 D20-c2 1649 chr3R 15594654 15594675 chr3R 15594738 15594759 7 84 0.0 3.0 1.5 2.8 105 chr3R 15594654 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594759 intergenic not near genes chr3R_7_15590001 chr3R_15590001 D20-c2 1650 chr3R 15601162 15601196 chr3R 15608685 15608719 412 13 7523 3.0 3.0 3.0 3.2 7557 chr3R 15601162 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608719 intergenic not near genes chr3R_13_15600001 chr3R_15600001 D20-c2 1651 chr3R 15618748 15618763 chr3R 15626223 15626238 blood 8 7475 2.0 3.0 2.5 2.3 7490 chr3R 15618748 intergenic not near genes chr3R 15622493 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_8_15620001 chr3R_15620001 D20-c2 1652 chr3R 15635231 15635238 chr3R 15635344 15635351 5 113 0.0 5.5 2.8 1.3 120 chr3R 15635231 intergenic CG43335 + chr3R 15635291 intergenic CG43335 + chr3R 15635351 intergenic CG43335 + chr3R_5_15635001 chr3R_15635001 D20-c2 1653 chr3R 15734170 15734204 chr3R 15734262 15734296 6 92 4.0 3.0 3.5 1.3 126 chr3R 15734170 intergenic not near genes chr3R 15734233 intergenic not near genes chr3R 15734296 intergenic not near genes chr3R_6_15730001 chr3R_15730001 D20-c2 1654 chr3R 16472579 16472592 chr3R 16472656 16472669 6 77 6.0 10.5 8.2 0.7 90 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472669 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 D20-c2 1655 chr3R 16563682 16563708 chr3R 16563762 16563788 11 80 8.0 6.5 7.2 1.3 106 chr3R 16563682 intron CG42342 + chr3R 16563735 intron CG42342 + chr3R 16563788 intron CG42342 + chr3R_11_16560001 chr3R_16560001 D20-c2 1656 chr3R 16582907 16582918 chr3R 16582987 16582998 6 80 9.0 13.0 11.0 0.5 91 chr3R 16582907 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16582998 intron Scp2 - chr3R_6_16580001 chr3R_16580001 D20-c2 1657 chr3R 16756319 16756351 chr3R 16762511 16762543 diver 16 6191 4.0 0.5 2.2 5.0 6224 chr3R 16756319 intron bxd - chr3R 16759431 intron bxd - chr3R 16762543 intron bxd - chr3R_16_16755001 chr3R_16755001 D20-c2 1658 chr3R 17120498 17120527 chr3R 17120724 17120753 7 226 3.0 0.5 1.8 2.5 255 chr3R 17120498 intron,exon cher -,CG34278 + chr3R 17120626 intron,exon cher -,CG34278 + chr3R 17120753 intron,exon cher -,CG34278 + chr3R_7_17120001 chr3R_17120001 D20-c2 1659 chr3R 17294667 17294693 chr3R 17295096 17295122 BS 11 429 2.5 6.0 4.2 2.1 455 chr3R 17294667 intergenic not near genes chr3R 17294894 intergenic not near genes chr3R 17295122 intergenic not near genes chr3R_11_17290001 chr3R_17290001 D20-c2 1660 chr3R 17335159 17335184 chr3R 17335236 17335261 6 77 3.5 4.5 4.0 1.2 102 chr3R 17335159 intron beat-IIa - chr3R 17335210 intron beat-IIa - chr3R 17335261 intron beat-IIa - chr3R_6_17335001 chr3R_17335001 D20-c2 1661 chr3R 17346245 17346247 chr3R 21907534 21907536 6 4561289 18.5 20.0 19.2 0.3 4561291 chr3R 17346245 intron beat-IIa - chr3R 19626890 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_6_19625001 chr3R_19625001 D20-c2 1662 chr3R 17355500 17355521 chr3R 17355568 17355577 12 76 2.5 3.0 2.8 3.2 77 chr3R 17355500 intron beat-IIa - chr3R 17355538 intron beat-IIa - chr3R 17355577 intron beat-IIa - chr3R_12_17355001 chr3R_17355001 D20-c2 1663 chr3R 17371404 17371432 chr3R 17371482 17371510 8 77 2.0 6.5 4.2 1.5 106 chr3R 17371404 3` UTR CR44256 - chr3R 17371457 3` UTR CR44256 - chr3R 17371510 3` UTR CR44256 - chr3R_8_17370001 chr3R_17370001 D20-c2 1664 chr3R 17415962 17416000 chr3R 17416043 17416081 24 80 3.5 5.0 4.2 4.6 119 chr3R 17415962 exon CG5866 + chr3R 17416022 exon CG5866 + chr3R 17416081 exon CG5866 + chr3R_24_17415001 chr3R_17415001 D20-c2 1665 chr3R 17452555 17452572 chr3R 17452756 17452773 6 201 2.0 2.5 2.2 1.9 218 chr3R 17452555 intergenic not near genes chr3R 17452664 intergenic not near genes chr3R 17452773 intergenic not near genes chr3R_6_17450001 chr3R_17450001 D20-c2 1666 chr3R 17461204 17461223 chr3R 17461287 17461306 4 83 1.0 2.0 1.5 1.6 102 chr3R 17461204 intergenic not near genes chr3R 17461255 intergenic not near genes chr3R 17461306 intergenic not near genes chr3R_4_17460001 chr3R_17460001 D20-c2 1667 chr3R 17467614 17467618 chr3R 17467726 17467730 4 112 4.0 3.5 3.8 0.8 116 chr3R 17467614 intergenic not near genes chr3R 17467672 intergenic not near genes chr3R 17467730 intergenic not near genes chr3R_4_17465001 chr3R_17465001 D20-c2 1668 chr3R 17586714 17586726 chr3R 17586820 17586832 4 106 4.0 2.5 3.2 1.0 118 chr3R 17586714 intergenic not near genes chr3R 17586773 intergenic not near genes chr3R 17586832 intergenic not near genes chr3R_4_17585001 chr3R_17585001 D20-c2 1669 chr3R 17591300 17591322 chr3R 17591731 17591759 F-element 12 436 3.0 5.0 4.0 2.4 459 chr3R 17591300 intergenic not near genes chr3R 17591530 intergenic not near genes chr3R 17591759 intergenic not near genes chr3R_12_17590001 chr3R_17590001 D20-c2 1670 chr3R 17653100 17653112 chr3R 17653191 17653203 4 91 0.5 4.0 2.2 1.2 103 chr3R 17653100 intron,intron CG14322 +,CR45223 - chr3R 17653152 intron,intron CG14322 +,CR45223 - chr3R 17653203 intron,intron CG14322 +,CR45223 - chr3R_4_17650001 chr3R_17650001 D20-c2 1671 chr3R 17653113 17653115 chr3R 17653188 17653206 4 87 0.0 4.0 2.0 1.3 93 chr3R 17653113 intron,intron CG14322 +,CR45223 - chr3R 17653160 intron,intron CG14322 +,CR45223 - chr3R 17653206 intron,intron CG14322 +,CR45223 - chr3R_4_17650001 chr3R_17650001 D20-c2 1672 chr3R 17725072 17725084 chr3R 17725167 17725179 5 95 3.0 0.0 1.5 2.0 107 chr3R 17725072 intergenic Atg8b - chr3R 17725126 intergenic Atg8b - chr3R 17725179 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 D20-c2 1673 chr3R 17739185 17739212 chr3R 17739268 17739295 12 82 5.0 4.0 4.5 2.2 110 chr3R 17739185 intron TyrRII + chr3R 17739240 intron TyrRII + chr3R 17739295 intron TyrRII + chr3R_12_17735001 chr3R_17735001 D20-c2 1674 chr3R 17763161 17763165 chr3R 17763648 17763652 roo 4 486 7.5 3.5 5.5 0.6 491 chr3R 17763161 5` UTR TyrR - chr3R 17763406 intergenic TyrR - chr3R 17763652 intergenic TyrR - chr3R_4_17760001 chr3R_17760001 D20-c2 1675 chr3R 17845208 17845217 chr3R 17845286 17845295 6 78 3.0 4.0 3.5 1.3 87 chr3R 17845208 intron tinc + chr3R 17845252 intron tinc + chr3R 17845295 intron tinc + chr3R_6_17845001 chr3R_17845001 D20-c2 1676 chr3R 17925853 17925889 chr3R 17927321 17927356 hobo 14 1468 5.5 4.0 4.8 2.4 1503 chr3R 17925853 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_14_17925001 chr3R_17925001 D20-c2 1677 chr3R 17983213 17983234 chr3R 17983290 17983311 4 77 5.0 0.0 2.5 1.1 98 chr3R 17983213 intron cpo + chr3R 17983262 intron cpo + chr3R 17983311 intron cpo + chr3R_4_17980001 chr3R_17980001 D20-c2 1678 chr3R 18032791 18032803 chr3R 18040465 18040477 opus 5 7674 0.0 4.0 2.0 1.7 7686 chr3R 18032791 intergenic not near genes chr3R 18036634 intergenic not near genes chr3R 18040477 intergenic not near genes chr3R_5_18035001 chr3R_18035001 D20-c2 1679 chr3R 18041761 18041772 chr3R 18041839 18041850 4 78 0.0 0.5 0.2 3.3 89 chr3R 18041761 intergenic not near genes chr3R 18041806 intergenic not near genes chr3R 18041850 intergenic not near genes chr3R_4_18040001 chr3R_18040001 D20-c2 1680 chr3R 18061450 18061458 chr3R 18061543 18061551 4 93 2.0 0.0 1.0 2.0 101 chr3R 18061450 intergenic not near genes chr3R 18061500 intergenic not near genes chr3R 18061551 intergenic not near genes chr3R_4_18060001 chr3R_18060001 D20-c2 1681 chr3R 18107124 18107134 chr3R 18107208 18107218 6 84 0.0 3.0 1.5 2.4 94 chr3R 18107124 intron sr + chr3R 18107171 intron sr + chr3R 18107218 intron sr + chr3R_6_18105001 chr3R_18105001 D20-c2 1682 chr3R 18215760 18215771 chr3R 18215930 18215941 4 170 2.0 3.0 2.5 1.1 181 chr3R 18215760 intergenic CG14314 + chr3R 18215850 intergenic CG14314 + chr3R 18215941 intergenic CG14314 + chr3R_4_18215001 chr3R_18215001 D20-c2 1683 chr3R 18299264 18299295 chr3R 18302631 18302662 12 3367 27.5 24.5 26.0 0.4 3398 chr3R 18299264 5` UTR Dlc90F + chr3R 18300963 exon CG18600 - chr3R 18302662 exon CG7126 - chr3R_12_18300001 chr3R_18300001 D20-c2 1684 chr3R 18501596 18501628 chr3R 18501678 18501710 14 82 2.0 5.0 3.5 3.1 114 chr3R 18501596 intron fru - chr3R 18501653 intron fru - chr3R 18501710 intron fru - chr3R_14_18500001 chr3R_18500001 D20-c2 1685 chr3R 18528368 18528398 chr3R 18528456 18528485 6 88 3.5 2.5 3.0 1.5 117 chr3R 18528368 intron fru - chr3R 18528426 intron fru - chr3R 18528485 intron fru - chr3R_6_18525001 chr3R_18525001 D20-c2 1686 chr3R 18606504 18606532 chr3R 18610737 18610765 F-element 5 4233 3.0 4.0 3.5 1.1 4261 chr3R 18606504 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610765 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 D20-c2 1687 chr3R 18618267 18618293 chr3R 18618353 18618379 6 86 0.5 1.5 1.0 3.0 112 chr3R 18618267 intron,intron qin +,CG14304 - chr3R 18618323 intron,intron qin +,CG14304 - chr3R 18618379 intron,intron qin +,CG14304 - chr3R_6_18615001 chr3R_18615001 D20-c2 1688 chr3R 18695758 18695771 chr3R 18695843 18695856 4 85 6.5 0.0 3.2 1.0 98 chr3R 18695758 3` UTR CG34282 + chr3R 18695807 intergenic CG34282 + chr3R 18695856 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 D20-c2 1689 chr3R 18781692 18781724 chr3R 18781769 18781801 12 76 1.5 2.5 2.0 4.0 109 chr3R 18781692 intron CG7720 - chr3R 18781746 intron CG7720 - chr3R 18781801 intron CG7720 - chr3R_12_18780001 chr3R_18780001 D20-c2 1690 chr3R 18839816 18839837 chr3R 18839901 18839922 10 84 3.0 5.0 4.0 2.0 106 chr3R 18839816 intron CG18208 - chr3R 18839869 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_10_18835001 chr3R_18835001 D20-c2 1691 chr3R 18948037 18948070 chr3R 18952174 18952207 9 4137 12.0 14.5 13.2 0.6 4170 chr3R 18948037 intron CG42613 + chr3R 18950122 intron CG42613 + chr3R 18952207 intron,intron CG42613 +,CG43732 + chr3R_9_18950001 chr3R_18950001 D20-c2 1692 chr3R 19085659 19085678 chr3R 19085998 19086017 11 339 3.0 5.0 4.0 2.2 358 chr3R 19085659 intron cdi - chr3R 19085838 intron cdi - chr3R 19086017 intron cdi - chr3R_11_19085001 chr3R_19085001 D20-c2 1693 chr3R 19193003 19193009 chr3R 19197301 19197314 F-element 5 4304 2.5 6.0 4.2 1.0 4311 chr3R 19193003 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197314 intron CG31475 + chr3R_5_19195001 chr3R_19195001 D20-c2 1694 chr3R 19213172 19213190 chr3R 19213249 19213267 4 77 11.5 11.5 11.5 0.3 95 chr3R 19213172 intron cry + chr3R 19213220 intron cry + chr3R 19213267 intron cry + chr3R_4_19210001 chr3R_19210001 D20-c2 1695 chr3R 19276932 19276945 chr3R 19277013 19277026 7 81 1.5 3.0 2.2 2.2 94 chr3R 19276932 intergenic not near genes chr3R 19276979 intergenic not near genes chr3R 19277026 intergenic not near genes chr3R_7_19275001 chr3R_19275001 D20-c2 1696 chr3R 19280551 19280569 chr3R 19280628 19280646 5 77 5.0 0.5 2.8 1.3 95 chr3R 19280551 intergenic not near genes chr3R 19280598 intergenic not near genes chr3R 19280646 intergenic not near genes chr3R_5_19280001 chr3R_19280001 D20-c2 1697 chr3R 19369508 19369512 chr3R 19369596 19369600 5 88 0.0 1.5 0.8 2.8 92 chr3R 19369508 intron Ino80 - chr3R 19369554 intron Ino80 - chr3R 19369600 intron Ino80 - chr3R_5_19365001 chr3R_19365001 D20-c2 1698 chr3R 19418409 19418437 chr3R 19418502 19418530 9 93 7.5 3.0 5.2 1.5 121 chr3R 19418409 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418530 intron CG31221 + chr3R_9_19415001 chr3R_19415001 D20-c2 1699 chr3R 19490442 19490470 chr3R 19490532 19490560 8 90 3.5 5.5 4.5 1.5 118 chr3R 19490442 intron,intron Dys +,CG15025 - chr3R 19490501 intron,intron Dys +,CG15025 - chr3R 19490560 intron,intron Dys +,CG15025 - chr3R_8_19490001 chr3R_19490001 D20-c2 1700 chr3R 19599058 19599091 chr3R 19599289 19599322 18 230 3.0 5.5 4.2 3.5 264 chr3R 19599058 intergenic Cpr92A - chr3R 19599190 intergenic Cpr92A - chr3R 19599322 intergenic Cpr92A - chr3R_18_19595001 chr3R_19595001 D20-c2 1701 chr3R 19602756 19602786 chr3R 19602835 19602865 7 79 4.0 1.5 2.8 1.8 109 chr3R 19602756 intergenic CG7333 + chr3R 19602810 intergenic CG7333 + chr3R 19602865 intergenic CG7333 + chr3R_7_19600001 chr3R_19600001 D20-c2 1702 chr3R 19678490 19678520 chr3R 19678583 19678613 8 93 1.5 3.0 2.2 2.5 123 chr3R 19678490 intron Naam + chr3R 19678552 intron Naam + chr3R 19678613 intron Naam + chr3R_8_19675001 chr3R_19675001 D20-c2 1703 chr3R 19848285 19848293 chr3R 19848393 19848401 6 108 0.0 1.0 0.5 4.0 116 chr3R 19848285 intron CG4662 + chr3R 19848343 intron CG4662 + chr3R 19848401 intron CG4662 + chr3R_6_19845001 chr3R_19845001 D20-c2 1704 chr3R 19908280 19908299 chr3R 19908365 19908384 8 85 0.0 5.0 2.5 2.3 104 chr3R 19908280 intron RhoGAP92B + chr3R 19908332 intron RhoGAP92B + chr3R 19908384 intron RhoGAP92B + chr3R_8_19905001 chr3R_19905001 D20-c2 1705 chr3R 19943885 19943900 chr3R 19943966 19943981 4 81 1.5 0.0 0.8 2.2 96 chr3R 19943885 intron Hs6st - chr3R 19943933 intron Hs6st - chr3R 19943981 intron Hs6st - chr3R_4_19940001 chr3R_19940001 D20-c2 1706 chr3R 19953947 19953982 chr3R 19954025 19954060 18 77 6.5 4.0 5.2 2.9 113 chr3R 19953947 intron Hs6st - chr3R 19954004 intron Hs6st - chr3R 19954060 intron Hs6st - chr3R_18_19950001 chr3R_19950001 D20-c2 1707 chr3R 20008820 20008855 chr3R 20008902 20008937 18 81 3.0 2.0 2.5 5.1 117 chr3R 20008820 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008937 intergenic MED25 +,Hs6st - chr3R_18_20005001 chr3R_20005001 D20-c2 1708 chr3R 20156693 20156721 chr3R 20165864 20165892 roo 4 9171 1.5 4.5 3.0 1.0 9199 chr3R 20156693 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_4_20160001 chr3R_20160001 D20-c2 1709 chr3R 20330996 20331030 chr3R 20331483 20331517 roo 12 487 2.0 4.0 3.0 3.0 521 chr3R 20330996 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331517 intergenic not near genes chr3R_12_20330001 chr3R_20330001 D20-c2 1710 chr3R 20661348 20661377 chr3R 20661607 20661636 12 258 2.5 0.5 1.5 4.8 288 chr3R 20661348 intergenic not near genes chr3R 20661492 intergenic not near genes chr3R 20661636 intergenic not near genes chr3R_12_20660001 chr3R_20660001 D20-c2 1711 chr3R 20707744 20707774 chr3R 20707960 20707990 7 216 1.5 1.0 1.2 3.2 246 chr3R 20707744 intron Oamb - chr3R 20707867 intron Oamb - chr3R 20707990 intron Oamb - chr3R_7_20705001 chr3R_20705001 D20-c2 1712 chr3R 20722857 20722887 chr3R 20722985 20723015 14 127 3.0 5.0 4.0 2.8 158 chr3R 20722857 intergenic not near genes chr3R 20722936 intergenic not near genes chr3R 20723015 intergenic not near genes chr3R_14_20720001 chr3R_20720001 D20-c2 1713 chr3R 20730933 20731057 chr3R 20731034 20731146 8 96 0.0 0.0 0.0 8.0 213 chr3R 20730933 intergenic not near genes chr3R 20731040 intergenic not near genes chr3R 20731146 intergenic CG31205 + chr3R_8_20730001 chr3R_20730001 D20-c2 1714 chr3R 20771707 20771730 chr3R 20771789 20771812 7 82 0.0 5.0 2.5 2.0 105 chr3R 20771707 intron,intron Syp +,Takl1 - chr3R 20771760 intron,intron Syp +,Takl1 - chr3R 20771812 intron,exon Syp +,Takl1 - chr3R_7_20770001 chr3R_20770001 D20-c2 1715 chr3R 20841564 20841596 chr3R 20841728 20841760 13 164 3.5 4.5 4.0 2.6 196 chr3R 20841564 intergenic not near genes chr3R 20841662 intergenic CG15695 + chr3R 20841760 intergenic CG15695 + chr3R_13_20840001 chr3R_20840001 D20-c2 1716 chr3R 20850089 20850111 chr3R 20850175 20850197 6 86 0.0 1.5 0.8 3.3 108 chr3R 20850089 intergenic RpS30 + chr3R 20850143 intergenic RpS30 + chr3R 20850197 intergenic RpS30 + chr3R_6_20850001 chr3R_20850001 D20-c2 1717 chr3R 20854470 20854514 chr3R 20859266 20859305 Doc 8 4793 1.0 3.0 2.0 2.7 4835 chr3R 20854470 intron Ir93a - chr3R 20856888 intron Ir93a - chr3R 20859305 exon Ir93a - chr3R_8_20855001 chr3R_20855001 D20-c2 1718 chr3R 20870250 20870284 chr3R 20870336 20870370 9 86 4.5 4.0 4.2 1.7 120 chr3R 20870250 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870370 intergenic not near genes chr3R_9_20870001 chr3R_20870001 D20-c2 1719 chr3R 20901344 20901375 chr3R 20901431 20901462 10 86 2.5 4.5 3.5 2.2 118 chr3R 20901344 intergenic not near genes chr3R 20901403 intergenic not near genes chr3R 20901462 intergenic CG5621 + chr3R_10_20900001 chr3R_20900001 D20-c2 1720 chr3R 21014008 21014044 chr3R 21014085 21014123 6 79 2.5 2.5 2.5 1.7 115 chr3R 21014008 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_6_21010001 chr3R_21010001 D20-c2 1721 chr3R 21021637 21021666 chr3R 21021719 21021750 19 82 7.0 4.5 5.8 2.8 113 chr3R 21021637 intron CG17278 - chr3R 21021694 intron CG17278 - chr3R 21021750 intron CG17278 - chr3R_19_21020001 chr3R_21020001 D20-c2 1722 chr3R 21108041 21108062 chr3R 21108303 21108324 7 262 3.5 2.5 3.0 1.8 283 chr3R 21108041 intergenic Sec15 -,rtet + chr3R 21108182 intergenic Sec15 -,rtet + chr3R 21108324 intergenic rtet +,Sec15 - chr3R_7_21105001 chr3R_21105001 D20-c2 1723 chr3R 21129822 21130010 chr3R 21129912 21130088 6 88 0.5 0.0 0.2 5.0 266 chr3R 21129822 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129955 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130088 intergenic Ice2 +,Obp93a -,CG5793 + chr3R_6_21125001 chr3R_21125001 D20-c2 1724 chr3R 21141673 21141701 chr3R 21150155 21150183 Tirant 17 8481 4.5 8.0 6.2 2.4 8510 chr3R 21141673 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150183 intron SNF4Agamma + chr3R_17_21145001 chr3R_21145001 D20-c2 1725 chr3R 21154550 21154586 chr3R 21154756 21154802 8 214 5.0 0.0 2.5 2.3 252 chr3R 21154550 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 D20-c2 1726 chr3R 21163245 21163277 chr3R 21163324 21163356 12 79 3.0 1.5 2.2 3.8 111 chr3R 21163245 intron SNF4Agamma + chr3R 21163300 intron SNF4Agamma + chr3R 21163356 intron SNF4Agamma + chr3R_12_21160001 chr3R_21160001 D20-c2 1727 chr3R 21200402 21200438 chr3R 21200480 21200516 10 78 2.0 2.0 2.0 3.3 114 chr3R 21200402 intron SNF4Agamma + chr3R 21200459 intron SNF4Agamma + chr3R 21200516 intron SNF4Agamma + chr3R_10_21200001 chr3R_21200001 D20-c2 1728 chr3R 21322972 21322998 chr3R 21323052 21323078 9 80 1.5 0.0 0.8 5.0 106 chr3R 21322972 intron CG16791 - chr3R 21323025 intron CG16791 - chr3R 21323078 intron CG16791 - chr3R_9_21320001 chr3R_21320001 D20-c2 1729 chr3R 21472013 21472035 chr3R 21472095 21472117 6 82 2.5 4.5 3.5 1.3 104 chr3R 21472013 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472117 intergenic not near genes chr3R_6_21470001 chr3R_21470001 D20-c2 1730 chr3R 21506903 21506913 chr3R 21506984 21506994 8 81 0.0 6.5 3.2 1.9 91 chr3R 21506903 intron C15 + chr3R 21506948 intron C15 + chr3R 21506994 intron C15 + chr3R_8_21505001 chr3R_21505001 D20-c2 1731 chr3R 21518253 21518268 chr3R 21518338 21518352 6 85 0.0 5.0 2.5 1.7 99 chr3R 21518253 intergenic not near genes chr3R 21518302 intergenic not near genes chr3R 21518352 intergenic not near genes chr3R_6_21515001 chr3R_21515001 D20-c2 1732 chr3R 21624102 21624121 chr3R 21624197 21624216 5 95 4.5 5.0 4.8 0.9 114 chr3R 21624102 intron E2f - chr3R 21624159 intron E2f - chr3R 21624216 intron E2f - chr3R_5_21620001 chr3R_21620001 D20-c2 1733 chr3R 21709559 21709584 chr3R 21709969 21709994 9 410 1.0 4.0 2.5 2.6 435 chr3R 21709559 intron CG31176 - chr3R 21709776 intron CG31176 - chr3R 21709994 intron CG31176 - chr3R_9_21705001 chr3R_21705001 D20-c2 1734 chr3R 21725673 21725676 chr3R 21725810 21725813 4 137 0.0 2.5 1.2 1.8 140 chr3R 21725673 intergenic not near genes chr3R 21725743 intergenic not near genes chr3R 21725813 intergenic not near genes chr3R_4_21725001 chr3R_21725001 D20-c2 1735 chr3R 21757201 21757230 chr3R 21758419 21758448 7 1218 35.5 19.5 27.5 0.2 1247 chr3R 21757201 exon CG31198 + chr3R 21757824 intergenic CG31198 + chr3R 21758448 intergenic CG42335 + chr3R_7_21755001 chr3R_21755001 D20-c2 1736 chr3R 21761118 21761154 chr3R 21768511 21768547 mdg1 20 7392 3.5 6.0 4.8 3.4 7429 chr3R 21761118 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768547 exon CG42335 + chr3R_20_21760001 chr3R_21760001 D20-c2 1737 chr3R 21784856 21784882 chr3R 21784955 21784981 8 99 3.0 0.0 1.5 3.2 125 chr3R 21784856 3` UTR,3` UTR CASK -,CRG - chr3R 21784918 3` UTR,3` UTR CASK -,CRG - chr3R 21784981 3` UTR,3` UTR CASK -,CRG - chr3R_8_21780001 chr3R_21780001 D20-c2 1738 chr3R 8339246 8339247 chr3R 21907534 21907534 18 13568287 15.0 20.0 17.5 1.0 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 D20-c2 1739 chr3R 9620954 9620956 chr3R 21907534 21907534 5 12286579 13.5 20.0 16.8 0.3 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 D20-c2 1740 chr3R 21907534 21907534 chr3R 28831801 28831802 21 6924268 19.5 21.0 20.2 1.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 D20-c2 1741 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 15.0 20.0 17.5 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 D20-c2 1742 chr3R 9620955 9620957 chr3R 21907535 21907535 9 12286579 14.0 20.0 17.0 0.5 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_9_15760001 chr3R_15760001 D20-c2 1743 chr3R 21907535 21907535 chr3R 28831801 28831802 37 6924267 20.0 21.0 20.5 1.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 D20-c2 1744 chr3R 21907536 21907536 chr3R 28831801 28831802 23 6924266 20.0 21.0 20.5 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_23_25365001 chr3R_25365001 D20-c2 1745 chr3R 21918998 21919017 chr3R 21919079 21919098 6 81 0.0 4.5 2.2 1.9 100 chr3R 21918998 intergenic not near genes chr3R 21919048 intergenic not near genes chr3R 21919098 intergenic not near genes chr3R_6_21915001 chr3R_21915001 D20-c2 1746 chr3R 22055557 22055589 chr3R 22055747 22055779 21 190 2.5 3.5 3.0 5.2 222 chr3R 22055557 intron how + chr3R 22055668 intron how + chr3R 22055779 intron how + chr3R_21_22055001 chr3R_22055001 D20-c2 1747 chr3R 22144969 22145006 chr3R 22145132 22145168 17 161 4.5 3.5 4.0 3.4 199 chr3R 22144969 intron SKIP + chr3R 22145068 intron SKIP + chr3R 22145168 intron SKIP + chr3R_17_22145001 chr3R_22145001 D20-c2 1748 chr3R 22153579 22153603 chr3R 22153660 22153684 12 80 7.0 6.5 6.8 1.5 105 chr3R 22153579 intron SKIP + chr3R 22153632 intron SKIP + chr3R 22153684 intron SKIP + chr3R_12_22150001 chr3R_22150001 D20-c2 1749 chr3R 22234689 22234714 chr3R 22236009 22236034 pogo 6 1319 3.5 3.0 3.2 1.4 1345 chr3R 22234689 intron SKIP + chr3R 22235362 intron SKIP + chr3R 22236034 intron SKIP + chr3R_6_22235001 chr3R_22235001 D20-c2 1750 chr3R 22239493 22239502 chr3R 22248554 22248563 roo 6 9061 7.5 0.0 3.8 1.2 9070 chr3R 22239493 intron SKIP + chr3R 22244028 intron SKIP + chr3R 22248563 intron SKIP + chr3R_6_22240001 chr3R_22240001 D20-c2 1751 chr3R 22252836 22252847 chr3R 22252926 22252953 6 101 7.5 0.0 3.8 1.2 117 chr3R 22252836 intron SKIP + chr3R 22252894 intron SKIP + chr3R 22252953 intron SKIP + chr3R_6_22250001 chr3R_22250001 D20-c2 1752 chr3R 22253849 22253880 chr3R 22253926 22253957 6 77 2.0 3.0 2.5 1.7 108 chr3R 22253849 intron SKIP + chr3R 22253903 intron SKIP + chr3R 22253957 intron SKIP + chr3R_6_22250001 chr3R_22250001 D20-c2 1753 chr3R 22437790 22437823 chr3R 22437881 22437914 11 91 1.5 2.5 2.0 3.7 124 chr3R 22437790 intergenic not near genes chr3R 22437852 intergenic not near genes chr3R 22437914 intergenic not near genes chr3R_11_22435001 chr3R_22435001 D20-c2 1754 chr3R 22450552 22450573 chr3R 22453193 22453214 NOF 5 2641 2.0 3.5 2.8 1.3 2662 chr3R 22450552 intron CG34376 + chr3R 22451883 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_5_22450001 chr3R_22450001 D20-c2 1755 chr3R 22531074 22531106 chr3R 22531161 22531193 14 87 4.0 4.0 4.0 2.8 119 chr3R 22531074 exon CG33093 - chr3R 22531134 exon CG33093 - chr3R 22531193 exon CG33093 - chr3R_14_22530001 chr3R_22530001 D20-c2 1756 chr3R 22538440 22538473 chr3R 22538526 22538559 16 86 5.5 3.0 4.2 3.1 119 chr3R 22538440 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_16_22535001 chr3R_22535001 D20-c2 1757 chr3R 22640705 22640733 chr3R 22640821 22640849 15 116 3.0 5.5 4.2 2.9 144 chr3R 22640705 intron wake + chr3R 22640777 intron wake + chr3R 22640849 intron wake + chr3R_15_22640001 chr3R_22640001 D20-c2 1758 chr3R 22657665 22657698 chr3R 22657744 22657777 8 79 0.5 3.0 1.8 2.9 112 chr3R 22657665 intron wake + chr3R 22657721 intron wake + chr3R 22657777 intron wake + chr3R_8_22655001 chr3R_22655001 D20-c2 1759 chr3R 22672300 22672331 chr3R 22672394 22672425 6 94 0.5 2.5 1.5 2.4 125 chr3R 22672300 intron wake + chr3R 22672362 intron wake + chr3R 22672425 intron wake + chr3R_6_22670001 chr3R_22670001 D20-c2 1760 chr3R 22769091 22769123 chr3R 22769169 22769201 12 78 0.5 2.5 1.5 4.8 110 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769201 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_12_22765001 chr3R_22765001 D20-c2 1761 chr3R 22846792 22846822 chr3R 22847014 22847041 11 222 2.0 4.5 3.2 2.6 249 chr3R 22846792 intergenic CG4704 - chr3R 22846916 intergenic not near genes chr3R 22847041 intergenic not near genes chr3R_11_22845001 chr3R_22845001 D20-c2 1762 chr3R 22880601 22880613 chr3R 22880679 22880691 12 78 7.0 6.5 6.8 1.5 90 chr3R 22880601 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880691 intergenic not near genes chr3R_12_22880001 chr3R_22880001 D20-c2 1763 chr3R 22880934 22880957 chr3R 22881073 22881096 7 139 4.5 4.0 4.2 1.3 162 chr3R 22880934 intergenic not near genes chr3R 22881015 intergenic not near genes chr3R 22881096 intergenic not near genes chr3R_7_22880001 chr3R_22880001 D20-c2 1764 chr3R 22881203 22881219 chr3R 22884910 22884926 Doc 5 3707 2.5 1.5 2.0 1.7 3723 chr3R 22881203 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884926 intergenic not near genes chr3R_5_22880001 chr3R_22880001 D20-c2 1765 chr3R 22889013 22889046 chr3R 22889091 22889124 9 78 3.5 3.0 3.2 2.1 111 chr3R 22889013 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889124 intergenic not near genes chr3R_9_22885001 chr3R_22885001 D20-c2 1766 chr3R 22974286 22974310 chr3R 22974371 22974395 5 84 0.5 3.5 2.0 1.7 109 chr3R 22974286 intergenic not near genes chr3R 22974340 intergenic not near genes chr3R 22974395 intergenic not near genes chr3R_5_22970001 chr3R_22970001 D20-c2 1767 chr3R 23083755 23083785 chr3R 23083864 23083894 22 106 3.5 6.5 5.0 3.7 139 chr3R 23083755 intron CG13830 - chr3R 23083824 intron CG13830 - chr3R 23083894 intron CG13830 - chr3R_22_23080001 chr3R_23080001 D20-c2 1768 chr3R 23100160 23100438 chr3R 23100248 23100519 20 84 6.5 3.0 4.8 3.4 359 chr3R 23100160 intron,exon CG13830 -,CG6738 + chr3R 23100340 intron,exon CG13830 -,CG6738 + chr3R 23100519 intron,exon CG13830 -,CG6738 + chr3R_20_23100001 chr3R_23100001 D20-c2 1769 chr3R 23197964 23197977 chr3R 23198044 23198057 5 80 1.5 3.0 2.2 1.6 93 chr3R 23197964 exon cnc - chr3R 23198010 intron cnc - chr3R 23198057 intron cnc - chr3R_5_23195001 chr3R_23195001 D20-c2 1770 chr3R 23385591 23385612 chr3R 23385714 23385735 10 123 4.0 3.0 3.5 2.2 144 chr3R 23385591 intergenic not near genes chr3R 23385663 intergenic not near genes chr3R 23385735 intergenic not near genes chr3R_10_23385001 chr3R_23385001 D20-c2 1771 chr3R 23497461 23497490 chr3R 23497556 23497585 8 95 4.0 4.5 4.2 1.5 124 chr3R 23497461 intergenic not near genes chr3R 23497523 intergenic not near genes chr3R 23497585 intergenic not near genes chr3R_8_23495001 chr3R_23495001 D20-c2 1772 chr3R 23498511 23498542 chr3R 23498850 23498881 15 341 27.0 27.5 27.2 0.5 370 chr3R 23498511 intergenic not near genes chr3R 23498696 intergenic not near genes chr3R 23498881 intergenic not near genes chr3R_15_23495001 chr3R_23495001 D20-c2 1773 chr3R 23536944 23536981 chr3R 23537127 23537164 6 183 4.0 5.0 4.5 1.1 220 chr3R 23536944 intergenic CG10168 -,CG16732 - chr3R 23537054 exon CG10168 - chr3R 23537164 exon CG10168 - chr3R_6_23535001 chr3R_23535001 D20-c2 1774 chr3R 23558406 23558419 chr3R 23560188 23560201 Bari1 5 1782 5.5 7.5 6.5 0.7 1795 chr3R 23558406 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560201 intron beat-IV + chr3R_5_23555001 chr3R_23555001 D20-c2 1775 chr3R 23564443 23564476 chr3R 23564588 23564613 7 144 3.0 3.5 3.2 1.7 170 chr3R 23564443 intron beat-IV + chr3R 23564528 intron beat-IV + chr3R 23564613 intron beat-IV + chr3R_7_23560001 chr3R_23560001 D20-c2 1776 chr3R 23684694 23684730 chr3R 23685181 23685182 roo 20 484 6.0 8.5 7.2 2.4 488 chr3R 23684694 exon CG18754 + chr3R 23684938 intron CG18754 + chr3R 23685182 exon CG18754 + chr3R_20_23680001 chr3R_23680001 D20-c2 1777 chr3R 23688470 23688498 chr3R 23688562 23688590 9 89 5.0 6.0 5.5 1.4 120 chr3R 23688470 intergenic SPE + chr3R 23688530 intergenic SPE +,CG10254 - chr3R 23688590 intergenic CG10254 -,SPE + chr3R_9_23685001 chr3R_23685001 D20-c2 1778 chr3R 23835402 23835423 chr3R 23844553 23844574 roo 9 9151 5.0 0.0 2.5 2.6 9172 chr3R 23835402 intron CG34355 + chr3R 23839988 intron CG34355 + chr3R 23844574 intron CG34355 + chr3R_9_23835001 chr3R_23835001 D20-c2 1779 chr3R 23877460 23877486 chr3R 23877707 23877733 6 247 2.0 2.5 2.2 1.9 273 chr3R 23877460 intron Pli - chr3R 23877596 intron Pli - chr3R 23877733 intron Pli - chr3R_6_23875001 chr3R_23875001 D20-c2 1780 chr3R 23893778 23893814 chr3R 23893883 23893919 14 105 2.0 5.5 3.8 2.9 141 chr3R 23893778 intergenic tbrd-1 -,sba - chr3R 23893848 intergenic sba -,tbrd-1 - chr3R 23893919 intergenic sba - chr3R_14_23890001 chr3R_23890001 D20-c2 1781 chr3R 23944911 23944935 chr3R 23944997 23945021 14 86 4.5 4.5 4.5 2.5 110 chr3R 23944911 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_14_23940001 chr3R_23940001 D20-c2 1782 chr3R 24042095 24042128 chr3R 24042261 24042294 10 166 4.0 2.0 3.0 2.5 199 chr3R 24042095 3` UTR spas + chr3R 24042194 3` UTR spas + chr3R 24042294 3` UTR spas + chr3R_10_24040001 chr3R_24040001 D20-c2 1783 chr3R 24072082 24072112 chr3R 24072521 24072524 jockey 15 437 7.5 0.0 3.8 3.1 442 chr3R 24072082 intron 4EHP - chr3R 24072303 intron 4EHP - chr3R 24072524 intron 4EHP - chr3R_15_24070001 chr3R_24070001 D20-c2 1784 chr3R 24076913 24076920 chr3R 24078381 24078388 hobo 5 1468 13.5 6.0 9.8 0.5 1475 chr3R 24076913 intron 4EHP - chr3R 24077650 intron 4EHP - chr3R 24078388 intron 4EHP - chr3R_5_24075001 chr3R_24075001 D20-c2 1785 chr3R 24076925 24076945 chr3R 24078379 24078413 hobo 7 1466 6.0 5.5 5.8 1.0 1488 chr3R 24076925 intron 4EHP - chr3R 24077669 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_7_24075001 chr3R_24075001 D20-c2 1786 chr3R 21907534 21907536 chr3R 24389465 24389465 7 2481930 20.0 21.5 20.8 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_7_23145001 chr3R_23145001 D20-c2 1787 chr3R 24527806 24527826 chr3R 24527898 24527918 6 91 2.5 0.5 1.5 2.4 112 chr3R 24527806 intergenic CG6607 +,CG13618 + chr3R 24527862 intergenic CG6607 +,CG13618 + chr3R 24527918 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 D20-c2 1788 chr3R 24624375 24624382 chr3R 24624465 24624472 6 90 0.0 5.5 2.8 1.6 97 chr3R 24624375 intron Syx18 - chr3R 24624424 intron Syx18 - chr3R 24624472 intron Syx18 - chr3R_6_24620001 chr3R_24620001 D20-c2 1789 chr3R 24667617 24667630 chr3R 24667695 24667708 5 78 3.0 0.5 1.8 1.8 91 chr3R 24667617 intron slo + chr3R 24667662 intron slo + chr3R 24667708 intron slo + chr3R_5_24665001 chr3R_24665001 D20-c2 1790 chr3R 24670161 24670194 chr3R 24670246 24670279 13 85 2.0 0.5 1.2 5.9 118 chr3R 24670161 intron slo + chr3R 24670220 intron slo + chr3R 24670279 intron slo + chr3R_13_24670001 chr3R_24670001 D20-c2 1791 chr3R 24671220 24671239 chr3R 24671298 24671317 6 78 3.5 3.0 3.2 1.4 97 chr3R 24671220 intron slo + chr3R 24671268 intron slo + chr3R 24671317 intron slo + chr3R_6_24670001 chr3R_24670001 D20-c2 1792 chr3R 24725554 24725590 chr3R 24725644 24725680 9 88 2.0 3.0 2.5 2.6 126 chr3R 24725554 intron tok + chr3R 24725617 intron tok + chr3R 24725680 intron tok + chr3R_9_24725001 chr3R_24725001 D20-c2 1793 chr3R 24730089 24730119 chr3R 24732468 24732498 Doc 8 2376 0.5 1.0 0.8 4.4 2409 chr3R 24730089 intron tok + chr3R 24731294 intron tok + chr3R 24732498 intron tok + chr3R_8_24730001 chr3R_24730001 D20-c2 1794 chr3R 24743048 24743062 chr3R 24743131 24743132 6 83 1.0 3.0 2.0 2.0 84 chr3R 24743048 intron tok + chr3R 24743090 intron tok + chr3R 24743132 intron tok + chr3R_6_24740001 chr3R_24740001 D20-c2 1795 chr3R 24787548 24787556 chr3R 24787625 24787633 4 77 4.5 0.0 2.2 1.2 85 chr3R 24787548 intergenic CG5805 - chr3R 24787590 intergenic CG5805 -,Ets96B + chr3R 24787633 intergenic CG5805 -,Ets96B + chr3R_4_24785001 chr3R_24785001 D20-c2 1796 chr3R 24841573 24841597 chr3R 24843182 24843206 5 1609 2.5 2.0 2.2 1.6 1633 chr3R 24841573 intergenic Esp +,CG33658 - chr3R 24842390 5` UTR Esp + chr3R 24843206 intron Esp + chr3R_5_24840001 chr3R_24840001 D20-c2 1797 chr3R 24888100 24888135 chr3R 24888258 24888293 28 158 7.0 2.5 4.8 4.8 193 chr3R 24888100 intron CG31121 - chr3R 24888196 intron CG31121 - chr3R 24888293 intron CG31121 - chr3R_28_24885001 chr3R_24885001 D20-c2 1798 chr3R 24893467 24893486 chr3R 24893548 24893567 7 81 0.5 3.0 1.8 2.5 100 chr3R 24893467 intron CG31121 - chr3R 24893517 intron CG31121 - chr3R 24893567 intron CG31121 - chr3R_7_24890001 chr3R_24890001 D20-c2 1799 chr3R 24927126 24927154 chr3R 24931917 24931946 Doc 12 4792 5.0 4.5 4.8 2.1 4820 chr3R 24927126 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_12_24925001 chr3R_24925001 D20-c2 1800 chr3R 24973947 24973983 chr3R 24974024 24974060 11 77 3.5 0.5 2.0 3.7 113 chr3R 24973947 intergenic not near genes chr3R 24974004 intergenic not near genes chr3R 24974060 intergenic not near genes chr3R_11_24970001 chr3R_24970001 D20-c2 1801 chr3R 24974921 24974936 chr3R 24975001 24975016 6 80 4.5 8.5 6.5 0.8 95 chr3R 24974921 intergenic not near genes chr3R 24974968 intergenic not near genes chr3R 24975016 intergenic not near genes chr3R_6_24970001 chr3R_24970001 D20-c2 1802 chr3R 25004900 25004920 chr3R 25004984 25005004 12 84 3.5 4.0 3.8 2.5 104 chr3R 25004900 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_12_25000001 chr3R_25000001 D20-c2 1803 chr3R 25018259 25018292 chr3R 25018337 25018370 17 77 4.0 7.5 5.8 2.5 111 chr3R 25018259 exon tnc + chr3R 25018314 exon tnc + chr3R 25018370 exon tnc + chr3R_17_25015001 chr3R_25015001 D20-c2 1804 chr3R 25053148 25053163 chr3R 25053234 25053249 6 86 0.0 8.0 4.0 1.2 101 chr3R 25053148 intergenic CG11791 +,CG31109 - chr3R 25053198 intergenic CG11791 +,CG31109 - chr3R 25053249 intergenic CG31109 -,CG11791 + chr3R_6_25050001 chr3R_25050001 D20-c2 1805 chr3R 25136400 25136432 chr3R 25136481 25136513 7 81 0.5 0.5 0.5 4.7 113 chr3R 25136400 3` UTR Bili + chr3R 25136456 3` UTR Bili + chr3R 25136513 3` UTR Bili + chr3R_7_25135001 chr3R_25135001 D20-c2 1806 chr3R 25209594 25209627 chr3R 25209677 25209710 11 83 1.5 3.5 2.5 3.1 116 chr3R 25209594 intron CG13654 + chr3R 25209652 intron CG13654 + chr3R 25209710 intron CG13654 + chr3R_11_25205001 chr3R_25205001 D20-c2 1807 chr3R 25235820 25235839 chr3R 25235901 25235920 5 81 2.0 1.5 1.8 1.8 100 chr3R 25235820 intergenic CG10420 - chr3R 25235870 intergenic CG10420 - chr3R 25235920 intergenic CG10420 - chr3R_5_25235001 chr3R_25235001 D20-c2 1808 chr3R 25268061 25268068 chr3R 25272649 25272656 4 4588 14.5 19.0 16.8 0.2 4595 chr3R 25268061 intron CR45214 - chr3R 25270358 exon,5` UTR CG11889 +,CG11891 + chr3R 25272656 3` UTR,exon CG11889 +,CG11891 + chr3R_4_25270001 chr3R_25270001 D20-c2 1809 chr3R 25368475 25368504 chr3R 25368594 25368623 5 119 1.0 0.0 0.5 3.3 148 chr3R 25368475 intron Fur1 - chr3R 25368549 intron Fur1 - chr3R 25368623 intron Fur1 - chr3R_5_25365001 chr3R_25365001 D20-c2 1810 chr3R 25437014 25437041 chr3R 25437099 25437126 13 85 2.5 3.5 3.0 3.2 112 chr3R 25437014 intron Fur1 - chr3R 25437070 intron Fur1 - chr3R 25437126 intron Fur1 - chr3R_13_25435001 chr3R_25435001 D20-c2 1811 chr3R 25689136 25689163 chr3R 25689245 25689272 9 109 2.5 5.5 4.0 1.8 136 chr3R 25689136 intergenic not near genes chr3R 25689204 intergenic not near genes chr3R 25689272 intergenic not near genes chr3R_9_25685001 chr3R_25685001 D20-c2 1812 chr3R 25721917 25721948 chr3R 25722322 25722353 16 404 0.0 4.5 2.2 5.0 436 chr3R 25721917 intron LpR2 - chr3R 25722135 intron LpR2 - chr3R 25722353 intron LpR2 - chr3R_16_25720001 chr3R_25720001 D20-c2 1813 chr3R 25725836 25725862 chr3R 25734997 25735023 roo 5 9161 1.0 5.5 3.2 1.2 9187 chr3R 25725836 intron LpR2 - chr3R 25730430 intron LpR2 - chr3R 25735023 intron LpR2 - chr3R_5_25730001 chr3R_25730001 D20-c2 1814 chr3R 25805381 25805401 chr3R 25805586 25805606 5 205 4.0 2.0 3.0 1.2 225 chr3R 25805381 intergenic not near genes chr3R 25805494 intergenic not near genes chr3R 25805606 intergenic not near genes chr3R_5_25805001 chr3R_25805001 D20-c2 1815 chr3R 25832693 25832724 chr3R 25841876 25841907 roo 13 9183 5.0 5.5 5.2 2.1 9214 chr3R 25832693 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841907 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 D20-c2 1816 chr3R 25843634 25843666 chr3R 25843765 25843797 7 131 0.5 1.5 1.0 3.5 163 chr3R 25843634 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843797 intergenic CR45653 + chr3R_7_25840001 chr3R_25840001 D20-c2 1817 chr3R 25885280 25885320 chr3R 25885367 25885382 23 86 4.5 5.5 5.0 3.8 102 chr3R 25885280 5` UTR SppL + chr3R 25885331 intron SppL + chr3R 25885382 5` UTR SppL + chr3R_23_25885001 chr3R_25885001 D20-c2 1818 chr3R 25927514 25927534 chr3R 25927597 25927617 9 83 1.5 0.5 1.0 4.5 103 chr3R 25927514 intron CCAP-R - chr3R 25927566 intron CCAP-R - chr3R 25927617 intron CCAP-R - chr3R_9_25925001 chr3R_25925001 D20-c2 1819 chr3R 26060401 26060436 chr3R 26060488 26060523 14 87 5.5 3.5 4.5 2.5 122 chr3R 26060401 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060523 intron CG14544 + chr3R_14_26060001 chr3R_26060001 D20-c2 1820 chr3R 26071196 26071208 chr3R 26071280 26071292 6 83 1.5 2.0 1.8 2.1 96 chr3R 26071196 3` UTR CR44950 - chr3R 26071244 3` UTR CR44950 - chr3R 26071292 intron CR44950 - chr3R_6_26070001 chr3R_26070001 D20-c2 1821 chr3R 26093842 26093874 chr3R 26093921 26093953 13 79 1.5 4.5 3.0 3.2 111 chr3R 26093842 intron dys - chr3R 26093898 intron dys - chr3R 26093953 intron dys - chr3R_13_26090001 chr3R_26090001 D20-c2 1822 chr3R 26108825 26108840 chr3R 26117408 26117424 Tirant 8 8584 4.0 0.5 2.2 2.5 8599 chr3R 26108825 5` UTR CG31324 + chr3R 26113124 intron CG31324 + chr3R 26117424 intron CG31324 + chr3R_8_26110001 chr3R_26110001 D20-c2 1823 chr3R 26140017 26140024 chr3R 26140096 26140102 5 79 4.5 7.5 6.0 0.7 85 chr3R 26140017 intergenic not near genes chr3R 26140060 intergenic not near genes chr3R 26140102 intergenic not near genes chr3R_5_26140001 chr3R_26140001 D20-c2 1824 chr3R 26284238 26284253 chr3R 26284346 26284361 8 108 3.0 3.5 3.2 1.9 123 chr3R 26284238 intergenic not near genes chr3R 26284300 intergenic not near genes chr3R 26284361 intergenic not near genes chr3R_8_26280001 chr3R_26280001 D20-c2 1825 chr3R 26294721 26294750 chr3R 26294800 26294829 9 79 0.5 2.5 1.5 3.6 108 chr3R 26294721 intergenic not near genes chr3R 26294775 intergenic not near genes chr3R 26294829 intergenic not near genes chr3R_9_26290001 chr3R_26290001 D20-c2 1826 chr3R 26376323 26376356 chr3R 26385484 26385517 roo 10 9161 4.5 0.5 2.5 2.9 9194 chr3R 26376323 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_10_26380001 chr3R_26380001 D20-c2 1827 chr3R 26390452 26390481 chr3R 26390548 26390577 10 96 3.5 1.5 2.5 2.9 125 chr3R 26390452 intergenic not near genes chr3R 26390514 intergenic not near genes chr3R 26390577 intergenic not near genes chr3R_10_26390001 chr3R_26390001 D20-c2 1828 chr3R 26456781 26456805 chr3R 26459323 26459347 19 2543 40.5 24.5 32.5 0.6 2566 chr3R 26456781 intergenic CG14237 + chr3R 26458064 intergenic CG14238 + chr3R 26459347 exon CG14238 + chr3R_19_26455001 chr3R_26455001 D20-c2 1829 chr3R 26510520 26510534 chr3R 26519576 26519590 roo 4 9056 2.0 2.0 2.0 1.3 9070 chr3R 26510520 intron plum - chr3R 26515055 intron plum - chr3R 26519590 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 D20-c2 1830 chr3R 26542047 26542079 chr3R 26542137 26542171 13 90 1.5 3.0 2.2 4.1 124 chr3R 26542047 intron scrib + chr3R 26542109 intron scrib + chr3R 26542171 intron scrib + chr3R_13_26540001 chr3R_26540001 D20-c2 1831 chr3R 26558323 26558359 chr3R 26565637 26565672 Stalker4 10 7312 2.5 5.0 3.8 2.1 7349 chr3R 26558323 intron scrib + chr3R 26561998 intron scrib + chr3R 26565672 intron scrib + chr3R_10_26560001 chr3R_26560001 D20-c2 1832 chr3R 26575005 26575032 chr3R 26575085 26575112 8 80 4.5 4.5 4.5 1.5 107 chr3R 26575005 exon scrib + chr3R 26575058 intron scrib + chr3R 26575112 intron scrib + chr3R_8_26575001 chr3R_26575001 D20-c2 1833 chr3R 26641637 26641668 chr3R 26641725 26641756 10 88 3.0 6.0 4.5 1.8 119 chr3R 26641637 intergenic not near genes chr3R 26641696 intergenic not near genes chr3R 26641756 intergenic not near genes chr3R_10_26640001 chr3R_26640001 D20-c2 1834 chr3R 26642733 26642761 chr3R 26643127 26643155 jockey 9 394 3.0 4.5 3.8 1.9 422 chr3R 26642733 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_9_26640001 chr3R_26640001 D20-c2 1835 chr3R 26669663 26669683 chr3R 26669746 26669766 6 83 1.5 5.5 3.5 1.3 103 chr3R 26669663 intron beat-VII - chr3R 26669714 intron beat-VII - chr3R 26669766 intron beat-VII - chr3R_6_26665001 chr3R_26665001 D20-c2 1836 chr3R 26727614 26727645 chr3R 26727753 26727784 15 139 3.0 2.5 2.8 3.9 170 chr3R 26727614 intron CG14246 + chr3R 26727699 intron CG14246 + chr3R 26727784 intron CG14246 + chr3R_15_26725001 chr3R_26725001 D20-c2 1837 chr3R 26810552 26810579 chr3R 26811038 26811065 roo 8 486 4.5 5.5 5.0 1.3 513 chr3R 26810552 intron Tl + chr3R 26810808 intron Tl + chr3R 26811065 intron Tl + chr3R_8_26810001 chr3R_26810001 D20-c2 1838 chr3R 26816743 26816759 chr3R 26816837 26816853 4 94 2.5 8.0 5.2 0.6 110 chr3R 26816743 intron Tl + chr3R 26816798 intron Tl + chr3R 26816853 intron Tl + chr3R_4_26815001 chr3R_26815001 D20-c2 1839 chr3R 26845572 26845606 chr3R 26845653 26845687 17 80 6.5 5.0 5.8 2.5 115 chr3R 26845572 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845687 intron Lerp - chr3R_17_26845001 chr3R_26845001 D20-c2 1840 chr3R 26898237 26898264 chr3R 26898326 26898353 7 89 2.0 3.0 2.5 2.0 116 chr3R 26898237 intron T48 + chr3R 26898295 intron T48 + chr3R 26898353 intron T48 + chr3R_7_26895001 chr3R_26895001 D20-c2 1841 chr3R 26981085 26981116 chr3R 26981171 26981202 9 86 2.0 3.5 2.8 2.4 117 chr3R 26981085 intron CG14253 + chr3R 26981144 intron CG14253 + chr3R 26981202 intron CG14253 + chr3R_9_26980001 chr3R_26980001 D20-c2 1842 chr3R 27007404 27007434 chr3R 27016540 27016570 roo 9 9136 3.0 3.5 3.2 2.1 9166 chr3R 27007404 intron RYa-R + chr3R 27011987 intron RYa-R + chr3R 27016570 intron RYa-R + chr3R_9_27010001 chr3R_27010001 D20-c2 1843 chr3R 27027692 27027720 chr3R 27027775 27027802 7 83 0.0 5.0 2.5 2.0 110 chr3R 27027692 intron RYa-R + chr3R 27027747 intron RYa-R + chr3R 27027802 intron RYa-R + chr3R_7_27025001 chr3R_27025001 D20-c2 1844 chr3R 27028724 27028748 chr3R 27028804 27028828 9 80 5.5 2.0 3.8 1.9 104 chr3R 27028724 intron RYa-R + chr3R 27028776 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_9_27025001 chr3R_27025001 D20-c2 1845 chr3R 27034544 27034576 chr3R 27035072 27035104 15 527 3.5 4.5 4.0 3.0 560 chr3R 27034544 intron RYa-R + chr3R 27034824 intron RYa-R + chr3R 27035104 intron RYa-R + chr3R_15_27030001 chr3R_27030001 D20-c2 1846 chr3R 27140519 27140542 chr3R 27148130 27148153 412 12 7611 5.0 4.5 4.8 2.1 7634 chr3R 27140519 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_12_27140001 chr3R_27140001 D20-c2 1847 chr3R 27292279 27292306 chr3R 27292392 27292419 11 112 3.5 7.0 5.2 1.8 140 chr3R 27292279 intergenic CG3348 - chr3R 27292349 intergenic CG3348 - chr3R 27292419 intergenic CG3348 - chr3R_11_27290001 chr3R_27290001 D20-c2 1848 chr3R 27315902 27315904 chr3R 27315981 27315983 5 79 11.0 0.0 5.5 0.8 81 chr3R 27315902 intron CG3339 - chr3R 27315942 intron CG3339 - chr3R 27315983 intron CG3339 - chr3R_5_27315001 chr3R_27315001 D20-c2 1849 chr3R 27342791 27342819 chr3R 27351372 27351401 Tirant 11 8582 3.5 1.5 2.5 3.1 8610 chr3R 27342791 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351401 intron CG42534 + chr3R_11_27345001 chr3R_27345001 D20-c2 1850 chr3R 27377470 27377503 chr3R 27377559 27377592 8 89 2.5 3.0 2.8 2.1 122 chr3R 27377470 3` UTR side - chr3R 27377531 3` UTR side - chr3R 27377592 3` UTR side - chr3R_8_27375001 chr3R_27375001 D20-c2 1851 chr3R 27385690 27385693 chr3R 27385962 27385965 6 272 6.5 3.0 4.8 1.0 275 chr3R 27385690 intron side - chr3R 27385828 intron side - chr3R 27385965 intron side - chr3R_6_27385001 chr3R_27385001 D20-c2 1852 chr3R 27385695 27385718 chr3R 27385959 27385990 7 271 4.5 2.5 3.5 1.6 295 chr3R 27385695 intron side - chr3R 27385842 intron side - chr3R 27385990 intron side - chr3R_7_27385001 chr3R_27385001 D20-c2 1853 chr3R 27397241 27397255 chr3R 27397318 27397331 9 77 0.0 8.5 4.2 1.7 90 chr3R 27397241 intron side - chr3R 27397286 intron side - chr3R 27397331 intron side - chr3R_9_27395001 chr3R_27395001 D20-c2 1854 chr3R 27521155 27521184 chr3R 27530365 27530394 roo 5 9210 1.0 1.0 1.0 2.5 9239 chr3R 27521155 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530394 intron CG12885 + chr3R_5_27525001 chr3R_27525001 D20-c2 1855 chr3R 27679937 27679971 chr3R 27680061 27680095 15 123 4.0 6.0 5.0 2.5 158 chr3R 27679937 exon CG12883 + chr3R 27680016 3` UTR CG12883 + chr3R 27680095 3` UTR CG12883 + chr3R_15_27680001 chr3R_27680001 D20-c2 1856 chr3R 27685777 27685795 chr3R 27685842 27685875 8 78 2.5 3.5 3.0 2.0 98 chr3R 27685777 3` UTR CG31055 - chr3R 27685826 3` UTR CG31055 - chr3R 27685875 3` UTR CG31055 - chr3R_8_27685001 chr3R_27685001 D20-c2 1857 chr3R 27706773 27706807 chr3R 27706851 27706885 6 78 4.0 2.0 3.0 1.5 112 chr3R 27706773 intergenic CG12428 -,CG12877 + chr3R 27706829 intergenic CG12428 -,CG12877 + chr3R 27706885 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 D20-c2 1858 chr3R 27718576 27718600 chr3R 27718656 27718680 12 80 2.5 4.5 3.5 2.7 104 chr3R 27718576 intergenic not near genes chr3R 27718628 intergenic not near genes chr3R 27718680 intergenic not near genes chr3R_12_27715001 chr3R_27715001 D20-c2 1859 chr3R 27725566 27725596 chr3R 27731009 27731039 I-element 13 5443 3.0 4.0 3.5 2.9 5473 chr3R 27725566 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731039 intergenic not near genes chr3R_13_27725001 chr3R_27725001 D20-c2 1860 chr3R 27779267 27779284 chr3R 27779348 27779365 10 81 4.5 9.0 6.8 1.3 98 chr3R 27779267 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_10_27775001 chr3R_27775001 D20-c2 1861 chr3R 27789087 27789112 chr3R 27789165 27789190 11 78 2.5 2.5 2.5 3.1 103 chr3R 27789087 exon CG34353 - chr3R 27789138 intron CG34353 - chr3R 27789190 intron CG34353 - chr3R_11_27785001 chr3R_27785001 D20-c2 1862 chr3R 27856756 27856787 chr3R 27858240 27858271 hopper2 13 1484 6.5 3.0 4.8 2.2 1515 chr3R 27856756 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_13_27855001 chr3R_27855001 D20-c2 1863 chr3R 27862961 27862979 chr3R 27868267 27868285 Transpac 5 5306 3.5 2.5 3.0 1.2 5324 chr3R 27862961 intron CG34353 - chr3R 27865623 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_5_27865001 chr3R_27865001 D20-c2 1864 chr3R 27875697 27875727 chr3R 27882753 27882783 297 7 7056 4.0 4.0 4.0 1.4 7086 chr3R 27875697 intron CG34353 - chr3R 27879240 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_7_27875001 chr3R_27875001 D20-c2 1865 chr3R 27941666 27941686 chr3R 27941765 27941785 13 99 6.5 6.0 6.2 1.8 119 chr3R 27941666 exon CG5514 + chr3R 27941726 exon CG5514 + chr3R 27941785 exon CG5514 + chr3R_13_27940001 chr3R_27940001 D20-c2 1866 chr3R 27973852 27973882 chr3R 27973934 27973964 17 82 2.5 6.5 4.5 3.1 112 chr3R 27973852 intron betaTub97EF - chr3R 27973908 intron betaTub97EF - chr3R 27973964 intron betaTub97EF - chr3R_17_27970001 chr3R_27970001 D20-c2 1867 chr3R 28068490 28068527 chr3R 28073933 28073970 I-element 8 5442 1.0 3.5 2.2 2.5 5480 chr3R 28068490 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073970 intron CG34362 + chr3R_8_28070001 chr3R_28070001 D20-c2 1868 chr3R 28173672 28173704 chr3R 28181103 28181135 mdg1 9 7430 0.0 1.0 0.5 6.0 7463 chr3R 28173672 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181135 intron CG34354 + chr3R_9_28175001 chr3R_28175001 D20-c2 1869 chr3R 28253340 28253369 chr3R 28255851 28255880 jockey 11 2511 5.0 3.5 4.2 2.1 2540 chr3R 28253340 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_11_28250001 chr3R_28250001 D20-c2 1870 chr3R 28302100 28302128 chr3R 28302540 28302568 jockey 15 439 4.5 2.5 3.5 3.3 468 chr3R 28302100 intergenic not near genes chr3R 28302334 intergenic not near genes chr3R 28302568 intergenic not near genes chr3R_15_28300001 chr3R_28300001 D20-c2 1871 chr3R 28345650 28345669 chr3R 28345727 28345746 8 77 0.5 3.0 1.8 2.9 96 chr3R 28345650 intergenic Moca-cyp + chr3R 28345698 intergenic not near genes chr3R 28345746 intergenic not near genes chr3R_8_28345001 chr3R_28345001 D20-c2 1872 chr3R 28380788 28380822 chr3R 28381023 28381057 13 235 7.0 3.0 5.0 2.2 269 chr3R 28380788 intergenic not near genes chr3R 28380922 intergenic not near genes chr3R 28381057 intergenic not near genes chr3R_13_28380001 chr3R_28380001 D20-c2 1873 chr3R 28393704 28393946 chr3R 28393805 28394027 12 92 2.0 4.0 3.0 3.0 323 chr3R 28393704 intergenic not near genes chr3R 28393866 intergenic not near genes chr3R 28394027 intergenic not near genes chr3R_12_28390001 chr3R_28390001 D20-c2 1874 chr3R 28478415 28478449 chr3R 28478497 28478531 12 81 2.5 2.0 2.2 3.8 116 chr3R 28478415 intergenic not near genes chr3R 28478473 intergenic not near genes chr3R 28478531 intergenic not near genes chr3R_12_28475001 chr3R_28475001 D20-c2 1875 chr3R 28479146 28479166 chr3R 28479230 28479250 6 84 1.5 4.0 2.8 1.6 104 chr3R 28479146 intergenic not near genes chr3R 28479198 intergenic not near genes chr3R 28479250 intergenic not near genes chr3R_6_28475001 chr3R_28475001 D20-c2 1876 chr3R 28484353 28484374 chr3R 28486269 28486290 22 1916 32.5 56.0 44.2 0.5 1937 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486290 intergenic CG1894 + chr3R_22_28485001 chr3R_28485001 D20-c2 1877 chr3R 28616478 28616502 chr3R 28616573 28616597 8 95 1.5 4.0 2.8 2.1 119 chr3R 28616478 intron CG10011 - chr3R 28616538 intron CG10011 - chr3R 28616597 intron CG10011 - chr3R_8_28615001 chr3R_28615001 D20-c2 1878 chr3R 28638925 28638940 chr3R 28640210 28640225 4 1285 18.5 22.5 20.5 0.2 1300 chr3R 28638925 intergenic CG9988 + chr3R 28639575 intergenic not near genes chr3R 28640225 intergenic not near genes chr3R_4_28635001 chr3R_28635001 D20-c2 1879 chr3R 28637822 28637851 chr3R 28640296 28640325 11 2474 32.5 16.0 24.2 0.4 2503 chr3R 28637822 exon CG9988 + chr3R 28639074 intergenic CG9988 + chr3R 28640325 intergenic not near genes chr3R_11_28635001 chr3R_28635001 D20-c2 1880 chr3R 28655391 28655425 chr3R 28655494 28655528 16 103 3.0 3.0 3.0 4.0 137 chr3R 28655391 intergenic not near genes chr3R 28655460 intergenic not near genes chr3R 28655528 intergenic not near genes chr3R_16_28655001 chr3R_28655001 D20-c2 1881 chr3R 28671436 28671464 chr3R 28671561 28671589 21 124 5.5 1.0 3.2 5.0 153 chr3R 28671436 exon CG9989 + chr3R 28671512 exon CG9989 + chr3R 28671589 exon CG9989 + chr3R_21_28670001 chr3R_28670001 D20-c2 1882 chr3R 28744614 28744616 chr3R 28744727 28744729 5 113 4.5 13.0 8.8 0.5 115 chr3R 28744614 5` UTR AstA-R2 - chr3R 28744672 5` UTR AstA-R2 - chr3R 28744729 5` UTR AstA-R2 - chr3R_5_28740001 chr3R_28740001 D20-c2 1883 chr3R 28758284 28758297 chr3R 28763902 28763915 roo 7 5618 7.5 0.0 3.8 1.5 5631 chr3R 28758284 intergenic aqrs - chr3R 28761100 intergenic not near genes chr3R 28763915 intergenic not near genes chr3R_7_28760001 chr3R_28760001 D20-c2 1884 chr3R 28763903 28763918 chr3R 28771347 28771362 Stalker4 4 7444 0.0 1.0 0.5 2.7 7459 chr3R 28763903 intergenic not near genes chr3R 28767632 intergenic not near genes chr3R 28771362 intergenic not near genes chr3R_4_28765001 chr3R_28765001 D20-c2 1885 chr3R 28792875 28792904 chr3R 28797967 28798000 jockey 8 5096 5.0 4.0 4.5 1.5 5125 chr3R 28792875 intergenic not near genes chr3R 28795438 intergenic not near genes chr3R 28798000 intergenic not near genes chr3R_8_28795001 chr3R_28795001 D20-c2 1886 chr3R 21907534 21907536 chr3R 28831801 28831801 27 6924266 20.0 21.0 20.5 1.3 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_27_25365001 chr3R_25365001 D20-c2 1887 chr3R 21907534 21907534 chr3R 28831802 28831803 23 6924267 19.5 22.0 20.8 1.1 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_23_25365001 chr3R_25365001 D20-c2 1888 chr3R 28862154 28862166 chr3R 28862232 28862244 6 78 5.5 2.5 4.0 1.2 90 chr3R 28862154 intron spg + chr3R 28862199 intron spg + chr3R 28862244 intron spg + chr3R_6_28860001 chr3R_28860001 D20-c2 1889 chr3R 28962123 28962151 chr3R 28962579 28962607 9 456 3.0 2.5 2.8 2.4 484 chr3R 28962123 intron CG14521 - chr3R 28962365 intron CG14521 - chr3R 28962607 intron CG14521 - chr3R_9_28960001 chr3R_28960001 D20-c2 1890 chr3R 29032742 29032777 chr3R 29032820 29032855 23 78 3.5 4.0 3.8 4.8 113 chr3R 29032742 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032798 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032855 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_23_29030001 chr3R_29030001 D20-c2 1891 chr3R 29070058 29070074 chr3R 29070140 29070156 7 82 3.5 3.5 3.5 1.6 98 chr3R 29070058 intron CG11873 + chr3R 29070107 intron CG11873 + chr3R 29070156 intron CG11873 + chr3R_7_29070001 chr3R_29070001 D20-c2 1892 chr3R 29079377 29079410 chr3R 29080750 29080783 NOF 18 1372 3.5 3.5 3.5 4.0 1406 chr3R 29079377 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080783 intron CG11873 + chr3R_18_29080001 chr3R_29080001 D20-c2 1893 chr3R 29237252 29237283 chr3R 29239274 29239304 14 2022 22.5 7.5 15.0 0.9 2052 chr3R 29237252 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239304 exon CG31427 - chr3R_14_29235001 chr3R_29235001 D20-c2 1894 chr3R 29239225 29239246 chr3R 29245517 29245538 6 6291 6.5 23.0 14.8 0.4 6313 chr3R 29239225 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245538 exon SP1029 - chr3R_6_29240001 chr3R_29240001 D20-c2 1895 chr3R 29264191 29264201 chr3R 29264293 29264304 5 103 0.0 1.0 0.5 3.3 113 chr3R 29264191 intergenic not near genes chr3R 29264248 intergenic not near genes chr3R 29264304 intergenic not near genes chr3R_5_29260001 chr3R_29260001 D20-c2 1896 chr3R 29282809 29282821 chr3R 29282895 29282907 5 87 3.5 9.5 6.5 0.7 98 chr3R 29282809 intergenic not near genes chr3R 29282858 intergenic not near genes chr3R 29282907 intergenic not near genes chr3R_5_29280001 chr3R_29280001 D20-c2 1897 chr3R 29290092 29290100 chr3R 29290169 29290177 4 77 2.5 0.0 1.2 1.8 85 chr3R 29290092 intergenic not near genes chr3R 29290134 intergenic not near genes chr3R 29290177 intergenic not near genes chr3R_4_29290001 chr3R_29290001 D20-c2 1898 chr3R 29292058 29292076 chr3R 29292140 29292158 5 82 3.5 3.5 3.5 1.1 100 chr3R 29292058 intergenic not near genes chr3R 29292108 intergenic not near genes chr3R 29292158 intergenic not near genes chr3R_5_29290001 chr3R_29290001 D20-c2 1899 chr3R 29319831 29319859 chr3R 29320151 29320179 jockey 11 320 0.0 3.0 1.5 4.4 348 chr3R 29319831 intergenic Cnx99A - chr3R 29320005 intergenic Cnx99A - chr3R 29320179 intergenic not near genes chr3R_11_29320001 chr3R_29320001 D20-c2 1900 chr3R 29351732 29351753 chr3R 29351818 29351839 11 85 5.5 5.0 5.2 1.8 107 chr3R 29351732 intergenic not near genes chr3R 29351786 intergenic not near genes chr3R 29351839 intergenic not near genes chr3R_11_29350001 chr3R_29350001 D20-c2 1901 chr3R 29406612 29406645 chr3R 29407899 29407932 jockey 15 1286 4.5 3.5 4.0 3.0 1320 chr3R 29406612 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_15_29405001 chr3R_29405001 D20-c2 1902 chr3R 29446995 29447022 chr3R 29447082 29447110 8 88 4.0 3.5 3.8 1.7 115 chr3R 29446995 intron Ptp99A + chr3R 29447052 intron Ptp99A + chr3R 29447110 intron Ptp99A + chr3R_8_29445001 chr3R_29445001 D20-c2 1903 chr3R 29452606 29452637 chr3R 29452706 29452737 13 100 0.0 3.5 1.8 4.6 131 chr3R 29452606 intron Ptp99A + chr3R 29452672 intron Ptp99A + chr3R 29452737 intron Ptp99A + chr3R_13_29450001 chr3R_29450001 D20-c2 1904 chr3R 29474430 29474459 chr3R 29474518 29474547 9 88 1.0 1.0 1.0 4.5 117 chr3R 29474430 intron Ptp99A + chr3R 29474488 intron Ptp99A + chr3R 29474547 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 D20-c2 1905 chr3R 29505911 29505926 chr3R 29505989 29506004 7 78 1.0 10.5 5.8 1.0 93 chr3R 29505911 intergenic not near genes chr3R 29505958 intergenic not near genes chr3R 29506004 intergenic not near genes chr3R_7_29505001 chr3R_29505001 D20-c2 1906 chr3R 29539435 29539451 chr3R 29539512 29539528 5 77 5.0 0.0 2.5 1.4 93 chr3R 29539435 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539528 intergenic not near genes chr3R_5_29535001 chr3R_29535001 D20-c2 1907 chr3R 29566380 29566403 chr3R 29566458 29566480 9 78 2.0 5.5 3.8 1.9 100 chr3R 29566380 intergenic not near genes chr3R 29566430 intergenic not near genes chr3R 29566480 intergenic not near genes chr3R_9_29565001 chr3R_29565001 D20-c2 1908 chr3R 29590373 29590404 chr3R 29590467 29590498 15 94 3.5 6.0 4.8 2.6 125 chr3R 29590373 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590498 intron CG31041 - chr3R_15_29590001 chr3R_29590001 D20-c2 1909 chr3R 29669705 29669729 chr3R 29670135 29670159 15 430 3.0 5.5 4.2 2.9 454 chr3R 29669705 exon ppk30 + chr3R 29669932 exon ppk30 + chr3R 29670159 intron ppk30 + chr3R_15_29665001 chr3R_29665001 D20-c2 1910 chr3R 29738264 29738301 chr3R 29739732 29739769 hobo 5 1468 3.0 2.5 2.8 1.3 1505 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739769 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 D20-c2 1911 chr3R 29758947 29758971 chr3R 29759013 29759050 12 77 4.0 4.5 4.2 2.3 103 chr3R 29758947 3` UTR CR44953 - chr3R 29758998 3` UTR CR44953 - chr3R 29759050 intergenic CR44953 - chr3R_12_29755001 chr3R_29755001 D20-c2 1912 chr3R 29760359 29760389 chr3R 29761561 29761591 pogo 4 1202 1.5 2.0 1.8 1.4 1232 chr3R 29760359 intergenic not near genes chr3R 29760975 intergenic not near genes chr3R 29761591 intergenic not near genes chr3R_4_29760001 chr3R_29760001 D20-c2 1913 chr3R 29854825 29854861 chr3R 29854906 29854942 14 81 2.5 3.5 3.0 3.5 117 chr3R 29854825 3` UTR dgt1 - chr3R 29854884 exon dgt1 - chr3R 29854942 exon dgt1 - chr3R_14_29850001 chr3R_29850001 D20-c2 1914 chr3R 29882018 29882053 chr3R 29891176 29891211 roo 14 9158 4.0 3.5 3.8 2.9 9193 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891211 intron CG31038 + chr3R_14_29885001 chr3R_29885001 D20-c2 1915 chr3R 29900148 29900159 chr3R 29900230 29900241 5 82 8.0 4.0 6.0 0.7 93 chr3R 29900148 intron CG31038 + chr3R 29900194 intron CG31038 + chr3R 29900241 intron CG31038 + chr3R_5_29900001 chr3R_29900001 D20-c2 1916 chr3R 29950577 29950596 chr3R 29950655 29950663 8 76 5.5 3.5 4.5 1.5 86 chr3R 29950577 intergenic TkR99D - chr3R 29950620 intergenic TkR99D - chr3R 29950663 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 D20-c2 1917 chr3R 29966062 29966074 chr3R 29966140 29966152 5 78 5.0 8.0 6.5 0.7 90 chr3R 29966062 intron TkR99D - chr3R 29966107 intron TkR99D - chr3R 29966152 intron TkR99D - chr3R_5_29965001 chr3R_29965001 D20-c2 1918 chr3R 30013380 30013403 chr3R 30013479 30013502 10 99 1.5 2.0 1.8 3.6 122 chr3R 30013380 intron CG7920 - chr3R 30013441 intron CG7920 - chr3R 30013502 intron CG7920 - chr3R_10_30010001 chr3R_30010001 D20-c2 1919 chr3R 30029609 30029625 chr3R 30029715 30029731 9 106 4.5 8.5 6.5 1.2 122 chr3R 30029609 intron Axn + chr3R 30029670 intron Axn + chr3R 30029731 intron Axn + chr3R_9_30025001 chr3R_30025001 D20-c2 1920 chr3R 30084848 30084881 chr3R 30086314 30086349 hobo 10 1467 0.5 2.5 1.5 4.0 1501 chr3R 30084848 intron sima + chr3R 30085598 intron sima + chr3R 30086349 intron sima + chr3R_10_30085001 chr3R_30085001 D20-c2 1921 chr3R 30106394 30106413 chr3R 30106500 30106522 8 109 0.0 7.0 3.5 1.8 128 chr3R 30106394 intron sima + chr3R 30106458 intron sima + chr3R 30106522 intron sima + chr3R_8_30105001 chr3R_30105001 D20-c2 1922 chr3R 30124959 30124978 chr3R 30125036 30125055 9 77 4.0 6.0 5.0 1.5 96 chr3R 30124959 intergenic CG45073 - chr3R 30125007 intergenic CG45073 - chr3R 30125055 intergenic CG45073 - chr3R_9_30125001 chr3R_30125001 D20-c2 1923 chr3R 30136969 30136982 chr3R 30137049 30137062 11 80 6.0 7.0 6.5 1.5 93 chr3R 30136969 exon AdoR - chr3R 30137016 intron AdoR - chr3R 30137062 intron AdoR - chr3R_11_30135001 chr3R_30135001 D20-c2 1924 chr3R 30238766 30238775 chr3R 30239931 30239940 1360 4 1165 3.5 0.0 1.8 1.4 1174 chr3R 30238766 intergenic not near genes chr3R 30239353 intergenic not near genes chr3R 30239940 intergenic not near genes chr3R_4_30235001 chr3R_30235001 D20-c2 1925 chr3R 30271061 30271097 chr3R 30271148 30271159 10 78 2.0 1.5 1.8 3.6 98 chr3R 30271061 intergenic not near genes chr3R 30271110 intergenic not near genes chr3R 30271159 intergenic not near genes chr3R_10_30270001 chr3R_30270001 D20-c2 1926 chr3R 30351421 30351432 chr3R 30351500 30351511 14 79 14.0 4.5 9.2 1.4 90 chr3R 30351421 intron hdc + chr3R 30351466 intron hdc + chr3R 30351511 intron hdc + chr3R_14_30350001 chr3R_30350001 D20-c2 1927 chr3R 30396219 30396245 chr3R 30404486 30404512 roo 10 8267 2.5 8.5 5.5 1.5 8293 chr3R 30396219 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_10_30400001 chr3R_30400001 D20-c2 1928 chr3R 30456388 30456425 chr3R 30456469 30456506 12 81 0.5 1.0 0.8 6.7 118 chr3R 30456388 intergenic CG2224 - chr3R 30456447 3` UTR CG2224 - chr3R 30456506 3` UTR CG2224 - chr3R_12_30455001 chr3R_30455001 D20-c2 1929 chr3R 30458011 30458047 chr3R 30458092 30458128 10 81 3.0 3.0 3.0 2.5 117 chr3R 30458011 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_10_30455001 chr3R_30455001 D20-c2 1930 chr3R 30480472 30480510 chr3R 30482940 30482979 jockey 17 2469 4.0 5.0 4.5 3.1 2507 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_17_30480001 chr3R_30480001 D20-c2 1931 chr3R 30498405 30498433 chr3R 30498606 30498634 4 201 0.0 2.0 1.0 2.0 229 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498520 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 D20-c2 1932 chr3R 30544731 30544746 chr3R 30544824 30544839 6 92 7.0 3.0 5.0 1.0 108 chr3R 30544731 intron tmod + chr3R 30544785 intron tmod + chr3R 30544839 intron tmod + chr3R_6_30540001 chr3R_30540001 D20-c2 1933 chr3R 30591321 30591340 chr3R 30591409 30591428 5 88 0.0 4.5 2.2 1.6 107 chr3R 30591321 intergenic not near genes chr3R 30591374 intergenic not near genes chr3R 30591428 intergenic not near genes chr3R_5_30590001 chr3R_30590001 D20-c2 1934 chr3R 30627601 30627636 chr3R 30627682 30627717 11 81 2.0 2.0 2.0 3.7 116 chr3R 30627601 3` UTR CG2267 - chr3R 30627659 exon CG2267 - chr3R 30627717 exon CG2267 - chr3R_11_30625001 chr3R_30625001 D20-c2 1935 chr3R 30679517 30679547 chr3R 30686987 30687017 blood 9 7470 4.0 3.5 3.8 1.9 7500 chr3R 30679517 intergenic not near genes chr3R 30683267 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_9_30680001 chr3R_30680001 D20-c2 1936 chr3R 30700868 30700878 chr3R 30700992 30701002 5 124 2.5 0.0 1.2 2.3 134 chr3R 30700868 intergenic not near genes chr3R 30700935 intergenic not near genes chr3R 30701002 intergenic not near genes chr3R_5_30700001 chr3R_30700001 D20-c2 1937 chr3R 30755623 30755648 chr3R 30755709 30755734 12 86 4.5 3.5 4.0 2.4 111 chr3R 30755623 intergenic not near genes chr3R 30755678 intergenic not near genes chr3R 30755734 intergenic not near genes chr3R_12_30755001 chr3R_30755001 D20-c2 1938 chr3R 30818807 30818844 chr3R 30820373 30820410 1360 10 1566 1.5 3.5 2.5 2.9 1603 chr3R 30818807 intron cindr + chr3R 30819608 intron cindr + chr3R 30820410 intron cindr + chr3R_10_30815001 chr3R_30815001 D20-c2 1939 chr3R 30821408 30821419 chr3R 30821496 30821507 4 88 0.0 0.0 0.0 4.0 99 chr3R 30821408 intron cindr + chr3R 30821458 intron cindr + chr3R 30821507 intron cindr + chr3R_4_30820001 chr3R_30820001 D20-c2 1940 chr3R 30842832 30842863 chr3R 30842924 30842955 16 91 5.5 3.0 4.2 3.1 123 chr3R 30842832 intergenic not near genes chr3R 30842894 intergenic not near genes chr3R 30842955 intergenic not near genes chr3R_16_30840001 chr3R_30840001 D20-c2 1941 chr3R 30982596 30982627 chr3R 30982689 30982720 8 91 3.5 4.0 3.8 1.7 124 chr3R 30982596 intron 5-HT7 - chr3R 30982658 intron 5-HT7 - chr3R 30982720 intron 5-HT7 - chr3R_8_30980001 chr3R_30980001 D20-c2 1942 chr3R 30996634 30996670 chr3R 30996859 30996895 12 225 3.0 1.5 2.2 3.8 261 chr3R 30996634 intron 5-HT7 - chr3R 30996764 intron 5-HT7 - chr3R 30996895 intron 5-HT7 - chr3R_12_30995001 chr3R_30995001 D20-c2 1943 chr3R 31042109 31042137 chr3R 31042197 31042225 12 88 5.5 3.5 4.5 2.2 116 chr3R 31042109 intron CanA1 + chr3R 31042167 intron CanA1 + chr3R 31042225 intron CanA1 + chr3R_12_31040001 chr3R_31040001 D20-c2 1944 chr3R 31074234 31074245 chr3R 31081833 31081844 springer 6 7599 3.0 0.0 1.5 2.4 7610 chr3R 31074234 intron Sox100B + chr3R 31078039 intron Sox100B + chr3R 31081844 intron Sox100B + chr3R_6_31075001 chr3R_31075001 D20-c2 1945 chr3R 31087099 31087131 chr3R 31087612 31087644 17 513 5.5 4.0 4.8 2.9 545 chr3R 31087099 intergenic not near genes chr3R 31087372 intergenic not near genes chr3R 31087644 intergenic not near genes chr3R_17_31085001 chr3R_31085001 D20-c2 1946 chr3R 31146748 31146770 chr3R 31146827 31146849 4 79 4.0 3.0 3.5 0.9 101 chr3R 31146748 intron Gycbeta100B + chr3R 31146798 intron Gycbeta100B + chr3R 31146849 intron Gycbeta100B + chr3R_4_31145001 chr3R_31145001 D20-c2 1947 chr3R 31164548 31164578 chr3R 31164642 31164672 9 94 2.0 4.5 3.2 2.1 124 chr3R 31164548 intron,intron Gycbeta100B +,stops - chr3R 31164610 intron,intron Gycbeta100B +,stops - chr3R 31164672 intron,intron Gycbeta100B +,stops - chr3R_9_31160001 chr3R_31160001 D20-c2 1948 chr3R 31188020 31188053 chr3R 31188123 31188156 9 103 1.5 2.0 1.8 3.2 136 chr3R 31188020 intron mesh - chr3R 31188088 intron mesh - chr3R 31188156 intron mesh - chr3R_9_31185001 chr3R_31185001 D20-c2 1949 chr3R 31263801 31263833 chr3R 31263888 31263920 13 87 2.0 4.0 3.0 3.2 119 chr3R 31263801 exon CG18673 + chr3R 31263860 3` UTR CG18673 + chr3R 31263920 intergenic CG18673 + chr3R_13_31260001 chr3R_31260001 D20-c2 1950 chr3R 31275988 31275994 chr3R 31276088 31276101 4 104 3.5 3.0 3.2 1.0 113 chr3R 31275988 intergenic not near genes chr3R 31276044 intergenic not near genes chr3R 31276101 intergenic not near genes chr3R_4_31275001 chr3R_31275001 D20-c2 1951 chr3R 31279370 31279403 chr3R 31285562 31285595 diver 7 6192 6.5 4.0 5.2 1.1 6225 chr3R 31279370 intergenic not near genes chr3R 31282482 intergenic not near genes chr3R 31285595 intergenic not near genes chr3R_7_31280001 chr3R_31280001 D20-c2 1952 chr3R 31412726 31412739 chr3R 31412820 31412833 5 94 1.0 8.0 4.5 0.9 107 chr3R 31412726 intron Gprk2 + chr3R 31412780 intron Gprk2 + chr3R 31412833 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 D20-c2 1953 chr3R 31413092 31413108 chr3R 31418288 31418309 copia 6 5200 2.5 0.5 1.5 2.4 5217 chr3R 31413092 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418309 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 D20-c2 1954 chr3R 31426882 31426905 chr3R 31426975 31426998 4 93 3.0 1.0 2.0 1.3 116 chr3R 31426882 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31426998 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 D20-c2 1955 chr3R 31435365 31435386 chr3R 31435518 31435539 10 152 4.0 6.0 5.0 1.7 174 chr3R 31435365 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435539 intron Gprk2 + chr3R_10_31435001 chr3R_31435001 D20-c2 1956 chr3R 31453216 31453244 chr3R 31453295 31453323 12 79 6.5 4.5 5.5 1.8 107 chr3R 31453216 intron Gprk2 + chr3R 31453270 intron Gprk2 + chr3R 31453323 exon Gprk2 + chr3R_12_31450001 chr3R_31450001 D20-c2 1957 chr3R 31534598 31534634 chr3R 31534678 31534714 10 80 1.5 2.0 1.8 3.6 116 chr3R 31534598 intergenic not near genes chr3R 31534656 intergenic not near genes chr3R 31534714 intergenic not near genes chr3R_10_31530001 chr3R_31530001 D20-c2 1958 chr3R 31539344 31539357 chr3R 31539430 31539443 4 86 1.5 3.0 2.2 1.2 99 chr3R 31539344 intergenic not near genes chr3R 31539394 intergenic not near genes chr3R 31539443 intergenic not near genes chr3R_4_31535001 chr3R_31535001 D20-c2 1959 chr3R 31610126 31610146 chr3R 31610213 31610233 5 87 1.5 4.5 3.0 1.2 107 chr3R 31610126 intron CycG - chr3R 31610180 intron CycG - chr3R 31610233 intron CycG - chr3R_5_31610001 chr3R_31610001 D20-c2 1960 chr3R 31615170 31615185 chr3R 31615347 31615362 8 177 4.5 8.0 6.2 1.1 192 chr3R 31615170 3` UTR Med + chr3R 31615266 3` UTR Med + chr3R 31615362 3` UTR,3` UTR Med +,CG11539 - chr3R_8_31615001 chr3R_31615001 D20-c2 1961 chr3R 31630060 31630085 chr3R 31630166 31630191 11 106 4.5 3.5 4.0 2.2 131 chr3R 31630060 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630191 intron kek6 + chr3R_11_31630001 chr3R_31630001 D20-c2 1962 chr3R 31684463 31684495 chr3R 31684582 31684614 14 119 1.0 4.0 2.5 4.0 151 chr3R 31684463 intergenic not near genes chr3R 31684538 intergenic not near genes chr3R 31684614 intergenic not near genes chr3R_14_31680001 chr3R_31680001 D20-c2 1963 chr3R 31691529 31691563 chr3R 31696296 31696330 Doc 12 4767 2.0 8.0 5.0 2.0 4801 chr3R 31691529 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696330 intergenic not near genes chr3R_12_31690001 chr3R_31690001 D20-c2 1964 chr3R 31699718 31699752 chr3R 31699801 31699835 9 83 4.0 5.0 4.5 1.6 117 chr3R 31699718 intergenic not near genes chr3R 31699776 intergenic not near genes chr3R 31699835 intergenic not near genes chr3R_9_31695001 chr3R_31695001 D20-c2 1965 chr3R 31819213 31819217 chr3R 31819660 31819664 4 447 8.0 3.5 5.8 0.6 451 chr3R 31819213 intron RhoGAP100F + chr3R 31819438 intron RhoGAP100F + chr3R 31819664 intron RhoGAP100F + chr3R_4_31815001 chr3R_31815001 D20-c2 1966 chr3R 31831538 31831567 chr3R 31831618 31831647 8 79 3.0 2.0 2.5 2.3 109 chr3R 31831538 intron RhoGAP100F + chr3R 31831592 intron RhoGAP100F + chr3R 31831647 intron RhoGAP100F + chr3R_8_31830001 chr3R_31830001 D20-c2 1967 chr3R 31865045 31865063 chr3R 31865137 31865155 4 92 0.0 4.0 2.0 1.3 110 chr3R 31865045 intron heph - chr3R 31865100 intron heph - chr3R 31865155 exon heph - chr3R_4_31865001 chr3R_31865001 D20-c2 1968 chr3R 31925688 31925725 chr3R 31925765 31925802 6 76 0.5 1.5 1.0 3.0 114 chr3R 31925688 intron heph - chr3R 31925745 intron heph - chr3R 31925802 intron heph - chr3R_6_31925001 chr3R_31925001 D20-c2 1969 chr3R 31969892 31969922 chr3R 31969972 31970002 7 80 0.5 3.0 1.8 2.5 110 chr3R 31969892 intron heph - chr3R 31969947 intron heph - chr3R 31970002 intron heph - chr3R_7_31965001 chr3R_31965001 D20-c2 1970 chr3R 31991107 31991139 chr3R 31991187 31991219 11 80 1.0 1.5 1.2 5.0 112 chr3R 31991107 intron heph - chr3R 31991163 intron heph - chr3R 31991219 intron heph - chr3R_11_31990001 chr3R_31990001 D20-c2 1971 chr3R 31997989 31998018 chr3R 32005460 32005489 blood 6 7471 3.0 3.0 3.0 1.5 7500 chr3R 31997989 intron heph - chr3R 32001739 intron heph - chr3R 32005489 intron heph - chr3R_6_32000001 chr3R_32000001 D20-c2 1972 chr3R 32034258 32034286 chr3R 32034342 32034370 7 84 3.0 2.5 2.8 1.8 112 chr3R 32034258 intergenic not near genes chr3R 32034314 intergenic not near genes chr3R 32034370 intergenic not near genes chr3R_7_32030001 chr3R_32030001 D20-c2 1973 chr3R 32061687 32061712 chr3R 32062030 32062055 9 343 15.0 17.0 16.0 0.5 368 chr3R 32061687 intron Map205 - chr3R 32061871 intron Map205 - chr3R 32062055 intron Map205 - chr3R_9_32060001 chr3R_32060001 D20-c2 1974 chr4 76497 76516 chr4 81941 81960 I-element 4 5444 1.5 1.0 1.2 1.8 5463 chr4 76497 intron pan + chr4 79228 intron pan + chr4 81960 intron pan + chr4_4_75001 chr4_75001 D20-c2 1975 chr4 671605 671635 chr4 680189 680219 Tirant 5 8582 2.0 2.0 2.0 1.7 8614 chr4 671605 intron CG11360 + chr4 675912 intron CG11360 + chr4 680219 intron CG11360 + chr4_5_675001 chr4_675001 D20-c2 1976 chrX 827601 827627 chrX 835394 835420 roo 6 7793 0.5 1.5 1.0 3.0 7819 chrX 827601 intron CG43867 - chrX 831510 intron CG43867 - chrX 835420 intron CG43867 - chrX_6_830001 chrX_830001 D20-c2 1977 chrX 906702 906726 chrX 908491 908516 S-element 8 1790 6.0 7.5 6.8 1.0 1814 chrX 906702 intron CG43867 - chrX 907609 intron CG43867 - chrX 908516 intron CG43867 - chrX_8_905001 chrX_905001 D20-c2 1978 chrX 1482425 1482460 chrX 1482671 1482706 13 239 24.0 19.0 21.5 0.6 281 chrX 1482425 exon sta - chrX 1482566 intron,3` UTR,3` UTR sta -,snoRNA:M -,snoRNA:Me28S-G980 - chrX 1482706 exon sta - chrX_13_1480001 chrX_1480001 D20-c2 1979 chrX 1482861 1482869 chrX 1483255 1483265 4 395 22.5 13.0 17.8 0.2 404 chrX 1482861 exon sta - chrX 1483063 intron sta - chrX 1483265 5` UTR sta - chrX_4_1480001 chrX_1480001 D20-c2 1980 chrX 1562991 1562991 chrX 7978935 7978935 4 6415944 22.0 12.0 17.0 0.2 6415944 chrX 1562991 intron Mur2B - chrX 4770963 exon Bteb2 - chrX 7978935 intron sn + chrX_4_4770001 chrX_4770001 D20-c2 1981 chrX 1627975 1628001 chrX 1635443 1635470 gtwin 8 7469 0.5 5.0 2.8 2.1 7495 chrX 1627975 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 D20-c2 1982 chrX 2399839 2399867 chrX 2408193 2408221 roo 11 8354 7.0 3.5 5.2 1.8 8382 chrX 2399839 intergenic not near genes chrX 2404030 intergenic not near genes chrX 2408221 intergenic not near genes chrX_11_2400001 chrX_2400001 D20-c2 1983 chrX 2578808 2578844 chrX 2578901 2578937 11 93 1.0 2.0 1.5 4.4 129 chrX 2578808 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_11_2575001 chrX_2575001 D20-c2 1984 chrX 2664387 2664418 chrX 2665534 2665565 1360 8 1147 1.0 4.5 2.8 2.1 1178 chrX 2664387 intron sgg + chrX 2664976 intron sgg + chrX 2665565 intron sgg + chrX_8_2660001 chrX_2660001 D20-c2 1985 chrX 2888121 2888144 chrX 2888200 2888221 8 78 2.0 5.0 3.5 1.8 100 chrX 2888121 intron kirre + chrX 2888171 intron kirre + chrX 2888221 intron kirre + chrX_8_2885001 chrX_2885001 D20-c2 1986 chrX 3120072 3120097 chrX 3120151 3120176 5 76 1.0 2.5 1.8 1.8 104 chrX 3120072 intron kirre + chrX 3120124 intron kirre + chrX 3120176 intron kirre + chrX_5_3120001 chrX_3120001 D20-c2 1987 chrX 3415027 3415047 chrX 3421213 3421233 3S18 5 6186 2.0 2.5 2.2 1.6 6206 chrX 3415027 intron,intron CR44999 +,CG12535 - chrX 3418130 intron,intron CR44999 +,CG12535 - chrX 3421233 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 D20-c2 1988 chrX 3459980 3460007 chrX 3460058 3460085 6 78 3.5 1.0 2.2 1.9 105 chrX 3459980 intron,intron CR44999 +,CG16782 - chrX 3460032 intron,5` UTR CR44999 +,CG16782 - chrX 3460085 intron,5` UTR CR44999 +,CG16782 - chrX_6_3460001 chrX_3460001 D20-c2 1989 chrX 3493088 3493123 chrX 3502248 3502283 roo 4 9160 1.0 1.0 1.0 2.0 9195 chrX 3493088 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502283 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 D20-c2 1990 chrX 3513769 3513789 chrX 3513852 3513873 6 84 2.0 2.0 2.0 2.0 104 chrX 3513769 intron,intron CR44999 +,CG32791 - chrX 3513821 intron,intron CR44999 +,CG32791 - chrX 3513873 intron,intron CR44999 +,CG32791 - chrX_6_3510001 chrX_3510001 D20-c2 1991 chrX 3657412 3657441 chrX 3657493 3657522 7 78 0.5 1.0 0.8 3.9 110 chrX 3657412 intron AstA-R1 + chrX 3657467 intron AstA-R1 + chrX 3657522 intron AstA-R1 + chrX_7_3655001 chrX_3655001 D20-c2 1992 chrX 3881269 3881305 chrX 3881409 3881445 8 140 2.0 3.0 2.5 2.3 176 chrX 3881269 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881445 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 D20-c2 1993 chrX 3890661 3890673 chrX 3890987 3890999 4 326 5.0 3.5 4.2 0.8 338 chrX 3890661 intergenic CG15239 + chrX 3890830 intergenic CG15239 + chrX 3890999 intergenic CG42541 - chrX_4_3890001 chrX_3890001 D20-c2 1994 chrX 3986860 3986876 chrX 3994494 3994506 412 5 7633 3.5 1.0 2.2 1.6 7646 chrX 3986860 intergenic not near genes chrX 3990683 intergenic not near genes chrX 3994506 intergenic not near genes chrX_5_3990001 chrX_3990001 D20-c2 1995 chrX 3999291 3999321 chrX 3999374 3999404 8 82 1.5 4.0 2.8 2.1 113 chrX 3999291 intergenic not near genes chrX 3999348 intergenic not near genes chrX 3999404 intergenic not near genes chrX_8_3995001 chrX_3995001 D20-c2 1996 chrX 4185695 4185705 chrX 4185781 4185791 4 86 4.5 3.0 3.8 0.8 96 chrX 4185695 intron Fas2 - chrX 4185743 intron Fas2 - chrX 4185791 intron Fas2 - chrX_4_4185001 chrX_4185001 D20-c2 1997 chrX 4262753 4262765 chrX 4262853 4262865 6 100 5.0 1.5 3.2 1.4 112 chrX 4262753 intergenic not near genes chrX 4262809 intergenic not near genes chrX 4262865 intergenic not near genes chrX_6_4260001 chrX_4260001 D20-c2 1998 chrX 4267326 4267347 chrX 4267407 4267428 6 81 2.5 3.0 2.8 1.6 102 chrX 4267326 intergenic not near genes chrX 4267377 intergenic not near genes chrX 4267428 intergenic not near genes chrX_6_4265001 chrX_4265001 D20-c2 1999 chrX 4276477 4276512 chrX 4276557 4276572 9 78 3.0 2.0 2.5 2.6 95 chrX 4276477 intergenic CG15577 - chrX 4276524 3` UTR CG15577 - chrX 4276572 3` UTR CG15577 - chrX_9_4275001 chrX_4275001 D20-c2 2000 chrX 4396980 4397001 chrX 4397066 4397087 9 86 1.0 2.0 1.5 3.6 107 chrX 4396980 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397087 intron CR32773 - chrX_9_4395001 chrX_4395001 D20-c2 2001 chrX 4827976 4827984 chrX 4835348 4835356 Stalker4 4 7372 4.0 1.5 2.8 1.1 7380 chrX 4827976 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835356 intergenic not near genes chrX_4_4830001 chrX_4830001 D20-c2 2002 chrX 4827988 4827999 chrX 4835344 4835371 Stalker4 7 7368 3.0 0.5 1.8 2.5 7383 chrX 4827988 intergenic not near genes chrX 4831680 intergenic not near genes chrX 4835371 intergenic not near genes chrX_7_4830001 chrX_4830001 D20-c2 2003 chrX 4864165 4864183 chrX 4864244 4864250 4 75 2.0 4.0 3.0 1.0 85 chrX 4864165 intron CG42594 + chrX 4864208 intron CG42594 + chrX 4864250 intron CG42594 + chrX_4_4860001 chrX_4860001 D20-c2 2004 chrX 4946586 4946607 chrX 4946666 4946686 4 80 4.0 3.5 3.8 0.8 100 chrX 4946586 intron Ptp4E + chrX 4946636 intron Ptp4E + chrX 4946686 intron Ptp4E + chrX_4_4945001 chrX_4945001 D20-c2 2005 chrX 4961855 4961872 chrX 4962058 4962075 5 203 2.5 4.5 3.5 1.1 220 chrX 4961855 intron CR44833 - chrX 4961965 intron CR44833 - chrX 4962075 intron CR44833 - chrX_5_4960001 chrX_4960001 D20-c2 2006 chrX 4990048 4990073 chrX 4997263 4997288 roo 5 7215 2.0 1.0 1.5 2.0 7240 chrX 4990048 intron CR44833 - chrX 4993668 intron CR44833 - chrX 4997288 intron CR44833 - chrX_5_4990001 chrX_4990001 D20-c2 2007 chrX 5049578 5049607 chrX 5049667 5049696 6 89 2.0 0.0 1.0 3.0 118 chrX 5049578 intron,intron CR44833 -,ovo + chrX 5049637 intron,intron CR44833 -,ovo + chrX 5049696 intron,intron CR44833 -,ovo + chrX_6_5045001 chrX_5045001 D20-c2 2008 chrX 5096282 5096303 chrX 5103848 5103869 springer 5 7566 1.5 7.0 4.2 1.0 7587 chrX 5096282 intron,intron CG15465 +,rg + chrX 5100076 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 D20-c2 2009 chrX 5331761 5331781 chrX 5332839 5332853 9 1075 1.0 5.5 3.2 2.1 1092 chrX 5331761 exon XRCC1 + chrX 5332307 3` UTR XRCC1 + chrX 5332853 intron CanB + chrX_9_5330001 chrX_5330001 D20-c2 2010 chrX 5338716 5338735 chrX 5339970 5339989 jockey 5 1254 1.0 5.5 3.2 1.2 1273 chrX 5338716 intergenic not near genes chrX 5339352 intergenic not near genes chrX 5339989 intergenic SK + chrX_5_5335001 chrX_5335001 D20-c2 2011 chrX 5345444 5345475 chrX 5345556 5345588 5 112 1.0 1.5 1.2 2.3 144 chrX 5345444 intron SK + chrX 5345516 intron SK + chrX 5345588 intron SK + chrX_5_5345001 chrX_5345001 D20-c2 2012 chrX 5473593 5473620 chrX 5473670 5473697 6 76 0.0 1.0 0.5 4.0 104 chrX 5473593 intron SPR + chrX 5473645 intron SPR + chrX 5473697 intron SPR + chrX_6_5470001 chrX_5470001 D20-c2 2013 chrX 5509104 5509129 chrX 5509197 5509222 5 93 3.0 2.0 2.5 1.4 118 chrX 5509104 intergenic not near genes chrX 5509163 intergenic not near genes chrX 5509222 intergenic not near genes chrX_5_5505001 chrX_5505001 D20-c2 2014 chrX 6425013 6425031 chrX 6425569 6425587 4 556 13.5 14.0 13.8 0.3 574 chrX 6425013 intron CG42340 - chrX 6425300 intron CG42340 - chrX 6425587 intron CG42340 - chrX_4_6425001 chrX_6425001 D20-c2 2015 chrX 6457435 6457443 chrX 6457517 6457525 5 82 3.5 0.0 1.8 1.8 90 chrX 6457435 intron CG42340 - chrX 6457480 intron CG42340 - chrX 6457525 intron CG42340 - chrX_5_6455001 chrX_6455001 D20-c2 2016 chrX 6562818 6562837 chrX 6571301 6571320 Tirant 6 8482 4.5 3.0 3.8 1.2 8502 chrX 6562818 intron CG34417 + chrX 6567069 intron CG34417 + chrX 6571320 intron CG34417 + chrX_6_6565001 chrX_6565001 D20-c2 2017 chrX 6897573 6897583 chrX 6897652 6897662 4 79 0.5 1.0 0.8 2.2 89 chrX 6897573 intergenic not near genes chrX 6897618 intergenic not near genes chrX 6897662 intergenic not near genes chrX_4_6895001 chrX_6895001 D20-c2 2018 chrX 6989503 6989534 chrX 6989591 6989622 7 88 0.5 2.0 1.2 3.2 119 chrX 6989503 intron ogre - chrX 6989562 intron ogre - chrX 6989622 intron ogre - chrX_7_6985001 chrX_6985001 D20-c2 2019 chrX 7023600 7023634 chrX 7030991 7031025 Tabor 5 7391 4.0 2.0 3.0 1.2 7425 chrX 7023600 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031025 intron CG12541 - chrX_5_7025001 chrX_7025001 D20-c2 2020 chrX 7294517 7294534 chrX 7294616 7294633 5 99 5.5 1.0 3.2 1.2 116 chrX 7294517 intron,intron CR44357 -,CG1677 - chrX 7294575 intron,intron CR44357 -,CG1677 - chrX 7294633 intron,intron CR44357 -,CG1677 - chrX_5_7290001 chrX_7290001 D20-c2 2021 chrX 7399221 7399238 chrX 7399309 7399326 5 88 0.5 3.0 1.8 1.8 105 chrX 7399221 intron,intron CR44357 -,CG1677 - chrX 7399274 intron,intron CR44357 -,CG1677 - chrX 7399326 intron,intron CR44357 -,CG1677 - chrX_5_7395001 chrX_7395001 D20-c2 2022 chrX 7739715 7739741 chrX 7739812 7739838 4 97 2.5 0.0 1.2 1.8 123 chrX 7739715 3` UTR Tom40 + chrX 7739776 3` UTR Tom40 + chrX 7739838 3` UTR Tom40 + chrX_4_7735001 chrX_7735001 D20-c2 2023 chrX 8015223 8015235 chrX 8015310 8015322 5 87 2.5 0.0 1.2 2.3 99 chrX 8015223 intron Tbh + chrX 8015272 intron Tbh + chrX 8015322 intron Tbh + chrX_5_8015001 chrX_8015001 D20-c2 2024 chrX 8421473 8421493 chrX 8421566 8421586 7 93 1.5 2.0 1.8 2.5 113 chrX 8421473 intron Trf2 + chrX 8421530 intron Trf2 + chrX 8421586 intron Trf2 + chrX_7_8420001 chrX_8420001 D20-c2 2025 chrX 8922325 8922363 chrX 8922760 8922798 jockey 10 435 2.0 2.5 2.2 3.1 473 chrX 8922325 intron rdgA + chrX 8922562 intron rdgA + chrX 8922798 intron rdgA + chrX_10_8920001 chrX_8920001 D20-c2 2026 chrX 8971880 8971905 chrX 8971960 8971985 4 80 1.0 2.5 1.8 1.4 105 chrX 8971880 intron rdgA + chrX 8971932 intron rdgA + chrX 8971985 intron rdgA + chrX_4_8970001 chrX_8970001 D20-c2 2027 chrX 9218077 9218080 chrX 9218169 9218172 4 92 4.5 1.5 3.0 1.0 95 chrX 9218077 3` UTR t - chrX 9218124 3` UTR t - chrX 9218172 3` UTR t - chrX_4_9215001 chrX_9215001 D20-c2 2028 chrX 9337941 9337973 chrX 9338034 9338066 7 92 1.0 5.5 3.2 1.7 125 chrX 9337941 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338066 exon CG34449 - chrX_7_9335001 chrX_9335001 D20-c2 2029 chrX 9508132 9508166 chrX 9509651 9509685 jockey 8 1519 4.0 2.0 3.0 2.0 1553 chrX 9508132 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509685 intron CG32700 - chrX_8_9505001 chrX_9505001 D20-c2 2030 chrX 9543405 9543425 chrX 9543485 9543505 4 80 1.5 2.0 1.8 1.4 100 chrX 9543405 intron CG32700 - chrX 9543455 intron CG32700 - chrX 9543505 intron CG32700 - chrX_4_9540001 chrX_9540001 D20-c2 2031 chrX 9575797 9575820 chrX 9576120 9576145 mdg3 13 325 3.5 4.0 3.8 2.7 348 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_13_9575001 chrX_9575001 D20-c2 2032 chrX 9635101 9635127 chrX 9635203 9635229 9 102 3.0 2.0 2.5 2.6 128 chrX 9635101 intron l(1)G0232 - chrX 9635165 intron l(1)G0232 - chrX 9635229 intron l(1)G0232 - chrX_9_9635001 chrX_9635001 D20-c2 2033 chrX 9758047 9758065 chrX 9758133 9758151 4 86 0.5 0.5 0.5 2.7 104 chrX 9758047 intergenic not near genes chrX 9758099 intergenic not near genes chrX 9758151 intergenic not near genes chrX_4_9755001 chrX_9755001 D20-c2 2034 chrX 9784169 9784203 chrX 9784358 9784392 6 188 1.5 0.5 1.0 3.0 223 chrX 9784169 intron CG32698 + chrX 9784280 intron CG32698 + chrX 9784392 intron CG32698 + chrX_6_9780001 chrX_9780001 D20-c2 2035 chrX 9791866 9791895 chrX 9791964 9791993 10 98 0.5 2.5 1.5 4.0 127 chrX 9791866 intron CG32698 + chrX 9791930 intron CG32698 + chrX 9791993 intron CG32698 + chrX_10_9790001 chrX_9790001 D20-c2 2036 chrX 9842428 9842449 chrX 9843059 9843080 11 633 23.5 18.5 21.0 0.5 652 chrX 9842428 intron CG32698 + chrX 9842754 intron CG32698 + chrX 9843080 intron CG32698 + chrX_11_9840001 chrX_9840001 D20-c2 2037 chrX 9845361 9845361 chrX 14544906 14544906 4 4699545 7.0 15.0 11.0 0.3 4699545 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544906 intergenic not near genes chrX_4_12195001 chrX_12195001 D20-c2 2038 chrX 9923396 9923419 chrX 9923488 9923511 5 92 2.0 1.0 1.5 2.0 115 chrX 9923396 intergenic not near genes chrX 9923454 intergenic not near genes chrX 9923511 intergenic not near genes chrX_5_9920001 chrX_9920001 D20-c2 2039 chrX 10223675 10223702 chrX 10223795 10223822 8 120 2.0 2.0 2.0 2.7 147 chrX 10223675 intron CG34408 + chrX 10223748 intron CG34408 + chrX 10223822 intron CG34408 + chrX_8_10220001 chrX_10220001 D20-c2 2040 chrX 10651629 10651638 chrX 10651746 10651755 5 117 0.5 2.0 1.2 2.3 126 chrX 10651629 intron X11Lbeta + chrX 10651692 intron X11Lbeta + chrX 10651755 intron X11Lbeta + chrX_5_10650001 chrX_10650001 D20-c2 2041 chrX 10686059 10686084 chrX 10691197 10691222 roo 5 5138 1.5 4.0 2.8 1.3 5163 chrX 10686059 intron X11Lbeta + chrX 10688640 intron X11Lbeta + chrX 10691222 intron X11Lbeta + chrX_5_10685001 chrX_10685001 D20-c2 2042 chrX 10694149 10694183 chrX 10694230 10694264 5 81 1.5 1.0 1.2 2.3 115 chrX 10694149 intron X11Lbeta + chrX 10694206 intron X11Lbeta + chrX 10694264 intron X11Lbeta + chrX_5_10690001 chrX_10690001 D20-c2 2043 chrX 10731246 10731268 chrX 10731335 10731357 6 89 1.5 3.5 2.5 1.7 111 chrX 10731246 intron CG32676 - chrX 10731302 intron CG32676 - chrX 10731357 intron CG32676 - chrX_6_10730001 chrX_10730001 D20-c2 2044 chrX 10772673 10772691 chrX 10772757 10772775 Tirant 5 84 3.0 2.5 2.8 1.3 102 chrX 10772673 intron CG15211 + chrX 10772724 intron CG15211 + chrX 10772775 intron CG15211 + chrX_5_10770001 chrX_10770001 D20-c2 2045 chrX 10933926 10933930 chrX 10934015 10934019 4 89 0.0 3.0 1.5 1.6 93 chrX 10933926 intron Myo10A + chrX 10933972 intron Myo10A + chrX 10934019 intron Myo10A + chrX_4_10930001 chrX_10930001 D20-c2 2046 chrX 11081688 11081712 chrX 11082616 11082640 4 928 1.5 1.5 1.5 1.6 952 chrX 11081688 intron sev - chrX 11082164 intron sev - chrX 11082640 intron sev - chrX_4_11080001 chrX_11080001 D20-c2 2047 chrX 11190776 11190797 chrX 11190900 11190920 5 124 0.5 3.0 1.8 1.8 144 chrX 11190776 intergenic not near genes chrX 11190848 intergenic not near genes chrX 11190920 intergenic not near genes chrX_5_11190001 chrX_11190001 D20-c2 2048 chrX 11194450 11194459 chrX 11201872 11201881 gypsy5 5 7422 2.5 6.0 4.2 1.0 7431 chrX 11194450 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201881 intergenic CG11106 + chrX_5_11195001 chrX_11195001 D20-c2 2049 chrX 11297714 11297726 chrX 11297814 11297824 7 100 1.5 4.5 3.0 1.8 110 chrX 11297714 intron CG44422 - chrX 11297769 intron CG44422 - chrX 11297824 intron CG44422 - chrX_7_11295001 chrX_11295001 D20-c2 2050 chrX 11312060 11312091 chrX 11319414 11319445 Stalker2 5 7354 2.5 3.5 3.0 1.2 7385 chrX 11312060 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319445 intergenic not near genes chrX_5_11315001 chrX_11315001 D20-c2 2051 chrX 11633421 11633441 chrX 11640476 11640496 297 5 7055 2.5 2.5 2.5 1.4 7075 chrX 11633421 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640496 intron Ptp10D + chrX_5_11635001 chrX_11635001 D20-c2 2052 chrX 12094048 12094063 chrX 12094141 12094156 4 93 0.5 3.5 2.0 1.3 108 chrX 12094048 intron,intron CR43960 +,Ten-a + chrX 12094102 intron,intron CR43960 +,Ten-a + chrX 12094156 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 D20-c2 2053 chrX 12168138 12168167 chrX 12173581 12173604 I-element 7 5441 2.5 1.0 1.8 2.5 5466 chrX 12168138 intron Ten-a + chrX 12170871 intron Ten-a + chrX 12173604 intron Ten-a + chrX_7_12170001 chrX_12170001 D20-c2 2054 chrX 12277181 12277197 chrX 12277273 12277289 5 92 2.5 1.5 2.0 1.7 108 chrX 12277181 intron Ten-a + chrX 12277235 intron Ten-a + chrX 12277289 intron Ten-a + chrX_5_12275001 chrX_12275001 D20-c2 2055 chrX 12430949 12430963 chrX 12431028 12431042 4 79 1.5 2.0 1.8 1.4 93 chrX 12430949 intergenic not near genes chrX 12430996 intergenic not near genes chrX 12431042 intergenic not near genes chrX_4_12430001 chrX_12430001 D20-c2 2056 chrX 12511341 12511351 chrX 12511425 12511436 4 85 0.0 2.0 1.0 2.0 95 chrX 12511341 intron CG2556 + chrX 12511388 intron CG2556 + chrX 12511436 intron CG2556 + chrX_4_12510001 chrX_12510001 D20-c2 2057 chrX 12752289 12752308 chrX 12752377 12752396 7 88 0.5 3.0 1.8 2.5 107 chrX 12752289 5` UTR CR44619 + chrX 12752342 5` UTR CR44619 + chrX 12752396 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 D20-c2 2058 chrX 13146598 13146613 chrX 13146687 13146702 4 89 4.0 0.5 2.2 1.2 104 chrX 13146598 intron CG32645 + chrX 13146650 intron CG32645 + chrX 13146702 intron CG32645 + chrX_4_13145001 chrX_13145001 D20-c2 2059 chrX 13340864 13340892 chrX 13340950 13340978 6 86 2.5 2.5 2.5 1.7 114 chrX 13340864 3` UTR CG15747 + chrX 13340921 3` UTR CG15747 + chrX 13340978 3` UTR CG15747 + chrX_6_13340001 chrX_13340001 D20-c2 2060 chrX 13374839 13374866 chrX 13374920 13374947 10 81 0.5 1.5 1.0 5.0 108 chrX 13374839 intron CG1640 + chrX 13374893 intron CG1640 + chrX 13374947 intron CG1640 + chrX_10_13370001 chrX_13370001 D20-c2 2061 chrX 13463642 13463667 chrX 13469220 13469245 mdg3 5 5578 0.5 1.0 0.8 2.8 5603 chrX 13463642 intron Neto + chrX 13466444 intron Neto + chrX 13469245 intron Neto + chrX_5_13465001 chrX_13465001 D20-c2 2062 chrX 13530096 13530120 chrX 13534512 13534535 8 4415 15.0 25.5 20.2 0.4 4439 chrX 13530096 exon CG44428 - chrX 13532316 intergenic not near genes chrX 13534535 exon CG15756 + chrX_8_13530001 chrX_13530001 D20-c2 2063 chrX 13577753 13577780 chrX 13577989 13578017 6 236 0.5 0.5 0.5 4.0 264 chrX 13577753 intron Tango13 + chrX 13577885 intron Tango13 + chrX 13578017 intron Tango13 + chrX_6_13575001 chrX_13575001 D20-c2 2064 chrX 13734098 13734112 chrX 13734195 13734209 7 97 3.0 4.0 3.5 1.6 111 chrX 13734098 intron g - chrX 13734154 intron g - chrX 13734209 intron g - chrX_7_13730001 chrX_13730001 D20-c2 2065 chrX 13739102 13739120 chrX 13739179 13739197 6 77 3.0 1.0 2.0 2.0 95 chrX 13739102 intron,3` UTR Grip91 -,CG11134 + chrX 13739150 intron,3` UTR Grip91 -,CG11134 + chrX 13739197 intron Grip91 - chrX_6_13735001 chrX_13735001 D20-c2 2066 chrX 14105022 14105054 chrX 14114174 14114206 roo 9 9152 4.5 2.0 3.2 2.1 9184 chrX 14105022 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114206 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 D20-c2 2067 chrX 14131489 14131524 chrX 14131571 14131606 9 80 0.0 1.5 0.8 5.0 117 chrX 14131489 intergenic not near genes chrX 14131548 intergenic not near genes chrX 14131606 intergenic not near genes chrX_9_14130001 chrX_14130001 D20-c2 2068 chrX 14185240 14185433 chrX 14185316 14185538 8 84 7.0 0.5 3.8 1.7 298 chrX 14185240 exon CG32603 + chrX 14185389 exon CG32603 + chrX 14185538 exon CG32603 + chrX_8_14185001 chrX_14185001 D20-c2 2069 chrX 14214558 14214571 chrX 14214865 14214879 4 308 1.0 0.5 0.8 2.2 321 chrX 14214558 intron l(1)G0007 + chrX 14214718 intron l(1)G0007 + chrX 14214879 intron l(1)G0007 + chrX_4_14210001 chrX_14210001 D20-c2 2070 chrX 14296467 14296489 chrX 14296544 14296566 5 77 0.0 1.0 0.5 3.3 99 chrX 14296467 intergenic not near genes chrX 14296516 intergenic not near genes chrX 14296566 intergenic not near genes chrX_5_14295001 chrX_14295001 D20-c2 2071 chrX 14414218 14414245 chrX 14414296 14414306 5 75 0.5 0.0 0.2 4.2 88 chrX 14414218 intron dpr8 + chrX 14414262 intron dpr8 + chrX 14414306 intron dpr8 + chrX_5_14410001 chrX_14410001 D20-c2 2072 chrX 14714044 14714065 chrX 14714127 14714148 5 83 1.5 3.0 2.2 1.6 104 chrX 14714044 intron NetB - chrX 14714096 intron NetB - chrX 14714148 intron NetB - chrX_5_14710001 chrX_14710001 D20-c2 2073 chrX 14778026 14778058 chrX 14782824 14782856 Doc 5 4798 1.0 5.5 3.2 1.2 4830 chrX 14778026 intergenic CG5347 + chrX 14780441 intergenic not near genes chrX 14782856 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 D20-c2 2074 chrX 14818761 14818794 chrX 14823966 14823999 copia 8 5205 3.5 3.5 3.5 1.8 5238 chrX 14818761 intron rut - chrX 14821380 intron rut - chrX 14823999 intron rut - chrX_8_14820001 chrX_14820001 D20-c2 2075 chrX 14936862 14936868 chrX 14946120 14946126 roo 4 9258 3.5 3.5 3.5 0.9 9264 chrX 14936862 intron pdgy - chrX 14941494 intron pdgy - chrX 14946126 intron pdgy - chrX_4_14940001 chrX_14940001 D20-c2 2076 chrX 15190618 15190639 chrX 15190702 15190723 5 84 2.5 0.0 1.2 2.3 105 chrX 15190618 intergenic not near genes chrX 15190670 intergenic not near genes chrX 15190723 intergenic not near genes chrX_5_15190001 chrX_15190001 D20-c2 2077 chrX 15217279 15217307 chrX 15217364 15217389 6 84 3.0 1.5 2.2 1.9 110 chrX 15217279 intergenic not near genes chrX 15217334 intergenic not near genes chrX 15217389 intergenic not near genes chrX_6_15215001 chrX_15215001 D20-c2 2078 chrX 15248270 15248296 chrX 15248347 15248373 5 77 1.0 1.5 1.2 2.3 103 chrX 15248270 intergenic not near genes chrX 15248322 intergenic not near genes chrX 15248373 intergenic not near genes chrX_5_15245001 chrX_15245001 D20-c2 2079 chrX 15273703 15273733 chrX 15274871 15274901 1360 7 1168 3.0 3.5 3.2 1.7 1198 chrX 15273703 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274901 intergenic not near genes chrX_7_15270001 chrX_15270001 D20-c2 2080 chrX 15365798 15365824 chrX 15365880 15365906 6 82 1.0 2.5 1.8 2.1 108 chrX 15365798 intron acj6 - chrX 15365852 intron acj6 - chrX 15365906 intron acj6 - chrX_6_15365001 chrX_15365001 D20-c2 2081 chrX 15413060 15413085 chrX 15417363 15417377 Juan 8 4302 2.5 4.5 3.5 1.8 4317 chrX 15413060 intron Cngl - chrX 15415218 intron Cngl - chrX 15417377 intron Cngl - chrX_8_15415001 chrX_15415001 D20-c2 2082 chrX 15435693 15435697 chrX 15436127 15436131 rover 4 434 4.0 4.5 4.2 0.8 438 chrX 15435693 intron Cngl - chrX 15435912 intron Cngl - chrX 15436131 intron Cngl - chrX_4_15435001 chrX_15435001 D20-c2 2083 chrX 15536698 15536710 chrX 15536776 15536788 6 78 8.0 5.5 6.8 0.8 90 chrX 15536698 intron Ac13E - chrX 15536743 intron Ac13E - chrX 15536788 intron Ac13E - chrX_6_15535001 chrX_15535001 D20-c2 2084 chrX 15543267 15543298 chrX 15543350 15543381 8 83 2.5 2.5 2.5 2.3 114 chrX 15543267 intron Ac13E - chrX 15543324 intron Ac13E - chrX 15543381 intron Ac13E - chrX_8_15540001 chrX_15540001 D20-c2 2085 chrX 15589431 15589458 chrX 15589611 15589638 4 180 2.5 4.5 3.5 0.9 207 chrX 15589431 intron CG9220 - chrX 15589534 intron CG9220 - chrX 15589638 exon CG9220 - chrX_4_15585001 chrX_15585001 D20-c2 2086 chrX 15591305 15591326 chrX 15591600 15591625 10 296 7.0 14.5 10.8 0.8 320 chrX 15591305 intron CG9220 - chrX 15591465 intron CG9220 - chrX 15591625 intron CG9220 - chrX_10_15590001 chrX_15590001 D20-c2 2087 chrX 15893219 15893236 chrX 15893367 15893384 6 148 1.5 1.5 1.5 2.4 165 chrX 15893219 intron shi + chrX 15893302 intron shi + chrX 15893384 intron shi + chrX_6_15890001 chrX_15890001 D20-c2 2088 chrX 16222789 16222799 chrX 16231140 16231150 roo 4 8351 0.5 2.0 1.2 1.8 8361 chrX 16222789 intergenic not near genes chrX 16226970 intergenic not near genes chrX 16231150 intergenic not near genes chrX_4_16225001 chrX_16225001 D20-c2 2089 chrX 16492646 16492669 chrX 16498224 16498247 mdg3 6 5578 3.0 3.0 3.0 1.5 5601 chrX 16492646 intron para - chrX 16495446 intron para - chrX 16498247 intron para - chrX_6_16495001 chrX_16495001 D20-c2 2090 chrX 16492674 16492677 chrX 16498222 16498255 mdg3 6 5573 3.0 2.5 2.8 1.6 5581 chrX 16492674 intron para - chrX 16495464 intron para - chrX 16498255 intron para - chrX_6_16495001 chrX_16495001 D20-c2 2091 chrX 16724530 16724561 chrX 16724736 16724769 6 206 2.0 1.5 1.8 2.1 239 chrX 16724530 intron CG32572 + chrX 16724650 intron CG32572 + chrX 16724769 intron CG32572 + chrX_6_16720001 chrX_16720001 D20-c2 2092 chrX 16785277 16785307 chrX 16785382 16785412 5 105 0.5 0.5 0.5 3.3 135 chrX 16785277 3` UTR CG9609 - chrX 16785344 3` UTR CG9609 - chrX 16785412 3` UTR CG9609 - chrX_5_16785001 chrX_16785001 D20-c2 2093 chrX 16821238 16821256 chrX 16821317 16821337 4 80 2.5 2.0 2.2 1.2 99 chrX 16821238 intron CG4829 + chrX 16821288 intron CG4829 + chrX 16821337 intron CG4829 + chrX_4_16820001 chrX_16820001 D20-c2 2094 chrX 16936004 16936030 chrX 16936423 16936449 jockey 5 419 0.0 2.0 1.0 2.5 445 chrX 16936004 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936449 intron CG4928 + chrX_5_16935001 chrX_16935001 D20-c2 2095 chrX 17011964 17011998 chrX 17012048 17012082 8 84 2.5 2.0 2.2 2.5 118 chrX 17011964 intron CG45002 - chrX 17012023 intron CG45002 - chrX 17012082 intron CG45002 - chrX_8_17010001 chrX_17010001 D20-c2 2096 chrX 17122641 17122667 chrX 17122733 17122759 4 92 1.5 1.0 1.2 1.8 118 chrX 17122641 intron CG5004 + chrX 17122700 intron CG5004 + chrX 17122759 intron CG5004 + chrX_4_17120001 chrX_17120001 D20-c2 2097 chrX 17221826 17221843 chrX 17221913 17221930 4 86 2.0 0.5 1.2 1.8 104 chrX 17221826 intron CG5172 + chrX 17221878 intron CG5172 + chrX 17221930 intron CG5172 + chrX_4_17220001 chrX_17220001 D20-c2 2098 chrX 17282885 17282905 chrX 17282964 17282984 4 79 3.0 0.0 1.5 1.6 99 chrX 17282885 intron CG5445 + chrX 17282934 5` UTR CG5445 + chrX 17282984 intron CG5445 + chrX_4_17280001 chrX_17280001 D20-c2 2099 chrX 17352598 17352621 chrX 17352702 17352725 7 104 0.0 2.5 1.2 3.2 127 chrX 17352598 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352725 intergenic not near genes chrX_7_17350001 chrX_17350001 D20-c2 2100 chrX 17435749 17435778 chrX 17435826 17435855 6 77 1.0 2.0 1.5 2.4 106 chrX 17435749 intron CG12994 - chrX 17435802 intron CG12994 - chrX 17435855 intron CG12994 - chrX_6_17435001 chrX_17435001 D20-c2 2101 chrX 17476463 17476490 chrX 17476541 17476568 8 78 2.0 4.5 3.2 1.9 105 chrX 17476463 intron CG43658 - chrX 17476516 intron CG43658 - chrX 17476568 intron CG43658 - chrX_8_17475001 chrX_17475001 D20-c2 2102 chrX 17536854 17536874 chrX 17536933 17536958 7 83 1.0 3.5 2.2 2.2 104 chrX 17536854 intron CG43658 - chrX 17536906 intron CG43658 - chrX 17536958 intron CG43658 - chrX_7_17535001 chrX_17535001 D20-c2 2103 chrX 17545003 17545037 chrX 17545086 17545120 6 83 1.5 2.0 1.8 2.1 117 chrX 17545003 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545120 intron CG43658 - chrX_6_17545001 chrX_17545001 D20-c2 2104 chrX 17792954 17792981 chrX 17796253 17796280 flea 5 3299 2.5 2.0 2.2 1.6 3326 chrX 17792954 intron OdsH + chrX 17794617 intron OdsH + chrX 17796280 intron OdsH + chrX_5_17790001 chrX_17790001 D20-c2 2105 chrX 17879653 17879676 chrX 17879760 17879783 7 107 1.5 1.0 1.2 3.2 130 chrX 17879653 intron mnb - chrX 17879718 intron mnb - chrX 17879783 intron mnb - chrX_7_17875001 chrX_17875001 D20-c2 2106 chrX 18179563 18179596 chrX 18179806 18179839 7 243 0.5 1.5 1.0 3.5 276 chrX 18179563 intron Frq2 + chrX 18179701 intron Frq2 + chrX 18179839 intron Frq2 + chrX_7_18175001 chrX_18175001 D20-c2 2107 chrX 18194064 18194103 chrX 18194600 18194639 BS 6 536 0.0 1.0 0.5 4.0 575 chrX 18194064 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194639 intron Frq2 + chrX_6_18190001 chrX_18190001 D20-c2 2108 chrX 18337419 18337448 chrX 18337520 18337549 6 101 0.0 2.0 1.0 3.0 130 chrX 18337419 intron CG6123 - chrX 18337484 intron CG6123 - chrX 18337549 intron CG6123 - chrX_6_18335001 chrX_18335001 D20-c2 2109 chrX 18427380 18427407 chrX 18427792 18427818 6 412 2.0 1.0 1.5 2.4 438 chrX 18427380 intergenic CG42323 + chrX 18427599 intergenic not near genes chrX 18427818 intergenic not near genes chrX_6_18425001 chrX_18425001 D20-c2 2110 chrX 18429498 18429526 chrX 18434810 18434838 Transpac 6 5312 2.0 3.5 2.8 1.6 5340 chrX 18429498 intergenic not near genes chrX 18432168 intergenic not near genes chrX 18434838 intergenic not near genes chrX_6_18430001 chrX_18430001 D20-c2 2111 chrX 18467225 18467254 chrX 18467390 18467419 5 165 0.5 1.5 1.0 2.5 194 chrX 18467225 intron CG32547 - chrX 18467322 intron CG32547 - chrX 18467419 intron CG32547 - chrX_5_18465001 chrX_18465001 D20-c2 2112 chrX 18486110 18486135 chrX 18486199 18486225 7 90 4.0 3.5 3.8 1.5 115 chrX 18486110 exon psh - chrX 18486168 intron psh - chrX 18486225 intron psh - chrX_7_18485001 chrX_18485001 D20-c2 2113 chrX 18490077 18490100 chrX 18490190 18490223 8 122 5.0 3.0 4.0 1.6 146 chrX 18490077 intergenic CG15046 - chrX 18490150 intergenic not near genes chrX 18490223 intergenic not near genes chrX_8_18490001 chrX_18490001 D20-c2 2114 chrX 18574792 18574826 chrX 18574873 18574907 9 81 0.5 1.5 1.0 4.5 115 chrX 18574792 intergenic not near genes chrX 18574850 intergenic not near genes chrX 18574907 intergenic not near genes chrX_9_18570001 chrX_18570001 D20-c2 2115 chrX 18595497 18595520 chrX 18595581 18595603 9 84 1.5 2.0 1.8 3.2 106 chrX 18595497 intergenic not near genes chrX 18595550 intergenic not near genes chrX 18595603 intergenic not near genes chrX_9_18595001 chrX_18595001 D20-c2 2116 chrX 18645015 18645047 chrX 18645114 18645146 7 99 1.0 1.5 1.2 3.2 131 chrX 18645015 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645146 intron Rip11 - chrX_7_18645001 chrX_18645001 D20-c2 2117 chrX 18749877 18749891 chrX 18749962 18749976 5 85 1.0 1.0 1.0 2.5 99 chrX 18749877 intergenic not near genes chrX 18749926 intergenic not near genes chrX 18749976 intergenic not near genes chrX_5_18745001 chrX_18745001 D20-c2 2118 chrX 18947505 18947531 chrX 18947599 18947625 7 93 1.0 1.0 1.0 3.5 120 chrX 18947505 intron CG43759 + chrX 18947565 intron CG43759 + chrX 18947625 intron CG43759 + chrX_7_18945001 chrX_18945001 D20-c2 2119 chrX 19073685 19073697 chrX 19073773 19073785 4 88 4.0 0.0 2.0 1.3 100 chrX 19073685 intergenic not near genes chrX 19073735 intergenic not near genes chrX 19073785 intergenic not near genes chrX_4_19070001 chrX_19070001 D20-c2 2120 chrX 19080329 19080352 chrX 19080436 19080459 5 107 0.5 4.5 2.5 1.4 130 chrX 19080329 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080459 intergenic not near genes chrX_5_19080001 chrX_19080001 D20-c2 2121 chrX 19084112 19084120 chrX 19084233 19084241 4 121 0.0 2.0 1.0 2.0 129 chrX 19084112 intergenic CR45503 + chrX 19084176 intergenic CR45503 + chrX 19084241 intergenic CR45503 + chrX_4_19080001 chrX_19080001 D20-c2 2122 chrX 19099657 19099682 chrX 19099741 19099766 8 84 2.0 1.0 1.5 3.2 109 chrX 19099657 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099766 intergenic not near genes chrX_8_19095001 chrX_19095001 D20-c2 2123 chrX 19109107 19109129 chrX 19109292 19109313 5 185 0.0 1.0 0.5 3.3 206 chrX 19109107 intergenic not near genes chrX 19109210 intergenic not near genes chrX 19109313 intergenic not near genes chrX_5_19105001 chrX_19105001 D20-c2 2124 chrX 19124433 19124463 chrX 19124522 19124552 9 85 1.0 1.0 1.0 4.5 119 chrX 19124433 intergenic CG15882 - chrX 19124492 intergenic CG15882 - chrX 19124552 intergenic CG15882 -,tgy - chrX_9_19120001 chrX_19120001 D20-c2 2125 chrX 19125692 19125715 chrX 19125822 19125844 11 129 4.5 3.5 4.0 2.2 152 chrX 19125692 intron tgy - chrX 19125768 intron tgy - chrX 19125844 intron tgy - chrX_11_19125001 chrX_19125001 D20-c2 2126 chrX 19182013 19182041 chrX 19182126 19182154 5 113 0.0 0.0 0.0 5.0 141 chrX 19182013 3` UTR CG7453 + chrX 19182084 intergenic CG7453 + chrX 19182154 intergenic CG7453 + chrX_5_19180001 chrX_19180001 D20-c2 2127 chrX 13057298 13057301 chrX 19242812 19242814 21 6185513 3.0 3.0 3.0 5.2 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_21_16150001 chrX_16150001 D20-c2 2128 chrX 19281008 19281029 chrX 19281138 19281159 4 130 0.0 1.0 0.5 2.7 151 chrX 19281008 intergenic CG8034 - chrX 19281084 intergenic CG8034 - chrX 19281159 intergenic CG8034 - chrX_4_19280001 chrX_19280001 D20-c2 2129 chrX 19356999 19357011 chrX 19358441 19358453 NOF 4 1442 3.5 0.0 1.8 1.4 1454 chrX 19356999 intron kek5 + chrX 19357726 intron kek5 + chrX 19358453 intron kek5 + chrX_4_19355001 chrX_19355001 D20-c2 2130 chrX 19380157 19380187 chrX 19380399 19380429 pogo 7 242 2.0 1.5 1.8 2.5 272 chrX 19380157 intron kek5 + chrX 19380293 intron kek5 + chrX 19380429 intron kek5 + chrX_7_19380001 chrX_19380001 D20-c2 2131 chrX 19461142 19461175 chrX 19461239 19461272 4 97 0.5 3.5 2.0 1.3 130 chrX 19461142 intron kek5 + chrX 19461207 intron kek5 + chrX 19461272 intron kek5 + chrX_4_19460001 chrX_19460001 D20-c2 2132 chrX 19710070 19710100 chrX 19711857 19711887 S-element 13 1786 1.5 5.5 3.5 2.9 1817 chrX 19710070 intron meso18E - chrX 19710978 intron meso18E - chrX 19711887 intron meso18E - chrX_13_19710001 chrX_19710001 D20-c2 2133 chrX 19744642 19744662 chrX 19744757 19744772 8 122 17.5 19.0 18.2 0.4 130 chrX 19744642 5` UTR,exon CG33932 +,Rpp20 + chrX 19744707 intron,intron CG33932 +,Rpp20 + chrX 19744772 5` UTR,exon CG33932 +,Rpp20 + chrX_8_19740001 chrX_19740001 D20-c2 2134 chrX 19884088 19884117 chrX 19884162 19884192 4 76 1.5 3.0 2.2 1.2 104 chrX 19884088 intron Hers + chrX 19884140 intron Hers + chrX 19884192 intron Hers + chrX_4_19880001 chrX_19880001 D20-c2 2135 chrX 19983861 19983893 chrX 19983942 19983974 7 81 0.0 0.5 0.2 5.8 113 chrX 19983861 intergenic not near genes chrX 19983918 intergenic not near genes chrX 19983974 intergenic not near genes chrX_7_19980001 chrX_19980001 D20-c2 2136 chrX 19992415 19992437 chrX 19992492 19992508 9 75 3.5 4.5 4.0 1.8 93 chrX 19992415 intergenic not near genes chrX 19992462 intergenic not near genes chrX 19992508 intergenic not near genes chrX_9_19990001 chrX_19990001 D20-c2 2137 chrX 20041529 20041567 chrX 20041610 20041648 8 81 0.5 3.5 2.0 2.7 119 chrX 20041529 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041648 intron Dop2R - chrX_8_20040001 chrX_20040001 D20-c2 2138 chrX 20052789 20052810 chrX 20052873 20052895 8 85 2.0 2.5 2.2 2.5 106 chrX 20052789 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052895 intron Dop2R - chrX_8_20050001 chrX_20050001 D20-c2 2139 chrX 20105205 20105226 chrX 20105307 20105334 14 103 22.5 25.5 24.0 0.6 129 chrX 20105205 intergenic not near genes chrX 20105270 intergenic not near genes chrX 20105334 intergenic not near genes chrX_14_20105001 chrX_20105001 D20-c2 2140 chrX 20312879 20312905 chrX 20312958 20312984 6 79 1.0 0.5 0.8 3.3 105 chrX 20312879 intron CG1504 - chrX 20312932 intron CG1504 - chrX 20312984 intron CG1504 - chrX_6_20310001 chrX_20310001 D20-c2 2141 chrX 20369321 20369343 chrX 20369406 20369428 7 85 2.0 2.0 2.0 2.3 107 chrX 20369321 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369428 intergenic not near genes chrX_7_20365001 chrX_20365001 D20-c2 2142 chrX 20377328 20377347 chrX 20378796 20378815 hobo 7 1468 2.5 2.5 2.5 2.0 1487 chrX 20377328 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378815 intergenic not near genes chrX_7_20375001 chrX_20375001 D20-c2 2143 chrX 20432179 20432209 chrX 20432256 20432286 8 77 2.5 2.0 2.2 2.5 107 chrX 20432179 exon mal + chrX 20432232 exon mal + chrX 20432286 exon mal + chrX_8_20430001 chrX_20430001 D20-c2 2144 chrX 20531762 20531770 chrX 20531862 20531870 4 100 1.0 1.0 1.0 2.0 108 chrX 20531762 intergenic not near genes chrX 20531816 intergenic not near genes chrX 20531870 intergenic not near genes chrX_4_20530001 chrX_20530001 D20-c2 2145 chrX 20572771 20572802 chrX 20573072 20573103 10 301 1.5 1.0 1.2 4.5 332 chrX 20572771 intergenic not near genes chrX 20572937 intergenic not near genes chrX 20573103 intergenic not near genes chrX_10_20570001 chrX_20570001 D20-c2 2146 chrX 20634433 20634443 chrX 20634519 20634529 6 86 4.5 2.0 3.2 1.4 96 chrX 20634433 intergenic not near genes chrX 20634481 intergenic not near genes chrX 20634529 intergenic not near genes chrX_6_20630001 chrX_20630001 D20-c2 2147 chrX 20911911 20911920 chrX 20911989 20911998 4 78 2.5 3.0 2.8 1.1 87 chrX 20911911 intron shakB - chrX 20911954 intron shakB - chrX 20911998 intron shakB - chrX_4_20910001 chrX_20910001 D20-c2 2148 chrX 20940717 20940753 chrX 20942187 20942223 hobo 11 1469 2.5 2.5 2.5 3.1 1506 chrX 20940717 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942223 intergenic not near genes chrX_11_20940001 chrX_20940001 D20-c2 2149 chrX 20981027 20981045 chrX 20981131 20981142 4 102 1.0 0.5 0.8 2.2 115 chrX 20981027 intergenic not near genes chrX 20981084 intergenic not near genes chrX 20981142 intergenic not near genes chrX_4_20980001 chrX_20980001 D20-c2 2150 chrX 21022260 21022272 chrX 21022341 21022353 7 81 7.0 3.5 5.2 1.1 93 chrX 21022260 intergenic not near genes chrX 21022306 intergenic not near genes chrX 21022353 intergenic not near genes chrX_7_21020001 chrX_21020001 D20-c2 2151 chrX 21040452 21040487 chrX 21045369 21045404 8 4918 17.0 17.0 17.0 0.4 4952 chrX 21040452 3` UTR,5` UTR Ntf-2 +,CG15449 - chrX 21042928 intron Mgstl + chrX 21045404 intron Cbs + chrX_8_21040001 chrX_21040001 D20-c2 2152 chrX 21076336 21076358 chrX 21076416 21076438 4 80 2.5 0.5 1.5 1.6 102 chrX 21076336 intron bves + chrX 21076387 intron bves + chrX 21076438 intron bves + chrX_4_21075001 chrX_21075001 D20-c2 2153 chrX 21086128 21086151 chrX 21087158 21087181 jockey 7 1030 1.5 0.5 1.0 3.5 1053 chrX 21086128 intergenic not near genes chrX 21086654 intergenic not near genes chrX 21087181 intergenic not near genes chrX_7_21085001 chrX_21085001 D20-c2 2154 chrX 21088046 21088074 chrX 21088179 21088207 7 133 0.5 2.0 1.2 3.2 161 chrX 21088046 intergenic not near genes chrX 21088126 intergenic not near genes chrX 21088207 intergenic not near genes chrX_7_21085001 chrX_21085001 D20-c2 2155 chrX 21197063 21197089 chrX 21197141 21197162 7 78 1.0 2.5 1.8 2.5 99 chrX 21197063 intergenic not near genes chrX 21197112 intergenic not near genes chrX 21197162 intergenic not near genes chrX_7_21195001 chrX_21195001 D20-c2 2156 chrX 21268067 21268083 chrX 21268149 21268165 6 82 1.0 2.0 1.5 2.4 98 chrX 21268067 intron CG32521 - chrX 21268116 intron CG32521 - chrX 21268165 intron CG32521 - chrX_6_21265001 chrX_21265001 D20-c2 2157 chrX 21270361 21270378 chrX 21270452 21270469 5 91 1.5 2.5 2.0 1.7 108 chrX 21270361 intron CG32521 - chrX 21270415 intron CG32521 - chrX 21270469 intron CG32521 - chrX_5_21270001 chrX_21270001 D20-c2 2158 chrX 21275162 21275184 chrX 21275241 21275263 6 79 2.5 2.0 2.2 1.9 101 chrX 21275162 intron CG32521 - chrX 21275212 intron CG32521 - chrX 21275263 intron CG32521 - chrX_6_21275001 chrX_21275001 D20-c2 2159 chrX 21419212 21419242 chrX 21419298 21419328 4 86 1.0 0.5 0.8 2.2 116 chrX 21419212 intergenic not near genes chrX 21419270 intergenic not near genes chrX 21419328 intergenic not near genes chrX_4_21415001 chrX_21415001 D20-c2 2160 chrX 21452749 21452773 chrX 21452831 21452856 4 82 0.0 0.5 0.2 3.3 107 chrX 21452749 intron CG42343 - chrX 21452802 intron CG42343 - chrX 21452856 intron CG42343 - chrX_4_21450001 chrX_21450001 D20-c2 2161 chrX 21458692 21458711 chrX 21464129 21464148 Ivk 5 5437 0.5 1.5 1.0 2.5 5456 chrX 21458692 intergenic not near genes chrX 21461420 intergenic not near genes chrX 21464148 intergenic not near genes chrX_5_21460001 chrX_21460001 D20-c2 2162 chrX 21474406 21474431 chrX 21474773 21474798 1731 4 367 2.5 3.0 2.8 1.1 392 chrX 21474406 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474798 intergenic not near genes chrX_4_21470001 chrX_21470001 D20-c2 2163 chrX 21507327 21507351 chrX 21507418 21507442 10 91 3.0 2.5 2.8 2.6 115 chrX 21507327 intron CR45082 - chrX 21507384 intron CR45082 - chrX 21507442 intron CR45082 - chrX_10_21505001 chrX_21505001 D20-c2 2164 chrX 21668268 21668290 chrX 21668354 21668376 8 86 21.0 21.0 21.0 0.4 108 chrX 21668268 intergenic not near genes chrX 21668322 intergenic not near genes chrX 21668376 intergenic not near genes chrX_8_21665001 chrX_21665001 D20-c2 2165 chrX 22522626 22522650 chrX 22525447 22525471 NOF 4 2821 0.5 0.5 0.5 2.7 2845 chrX 22522626 intron CG17600 + chrX 22524048 intron CG17600 + chrX 22525471 intron CG17600 + chrX_4_22520001 chrX_22520001 D20-c2 2166 chrX 22596941 22596972 chrX 22597323 22597354 10 381 1.5 1.0 1.2 4.5 413 chrX 22596941 intron Cda4 - chrX 22597148 intron Cda4 - chrX 22597354 intron Cda4 - chrX_10_22595001 chrX_22595001 D20-c2 2167 chrX 22660574 22660590 chrX 22660659 22660675 4 85 3.0 0.0 1.5 1.6 101 chrX 22660574 intron CR44997 + chrX 22660624 intron CR44997 + chrX 22660675 intron CR44997 + chrX_4_22660001 chrX_22660001 D20-c2 2168 chrX 22697023 22697055 chrX 22697140 22697172 16 117 2.0 0.0 1.0 8.0 149 chrX 22697023 intron CR44997 + chrX 22697098 intron CR44997 + chrX 22697172 intron CR44997 + chrX_16_22695001 chrX_22695001 D20-c2 2169 chrX 22697496 22697522 chrX 22701794 22701820 Juan 5 4298 3.5 3.5 3.5 1.1 4324 chrX 22697496 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701820 intron CR44997 + chrX_5_22695001 chrX_22695001 D20-c2 2170 chrX 22811992 22812003 chrX 22816765 22816776 F-element 4 4773 4.5 2.0 3.2 1.0 4784 chrX 22811992 intergenic CG12446 - chrX 22814384 intergenic not near genes chrX 22816776 intergenic not near genes chrX_4_22810001 chrX_22810001 D20-c2 2171 chrX 22824229 22824436 chrX 22824356 22824570 7 130 2.5 0.5 1.5 2.8 341 chrX 22824229 intergenic fog - chrX 22824400 3` UTR fog - chrX 22824570 3` UTR fog - chrX_7_22820001 chrX_22820001 D20-c2 2172 chrX 22870879 22870901 chrX 22870971 22870993 8 92 1.0 2.0 1.5 3.2 114 chrX 22870879 intron,3` UTR CG42346 +,CR43656 - chrX 22870936 intron,3` UTR CG42346 +,CR43656 - chrX 22870993 intron,3` UTR CG42346 +,CR43656 - chrX_8_22870001 chrX_22870001 D20-c2 2173 chrX 22895726 22895759 chrX 22895845 22895878 13 118 4.0 3.0 3.5 2.9 152 chrX 22895726 intergenic not near genes chrX 22895802 intergenic not near genes chrX 22895878 intergenic not near genes chrX_13_22895001 chrX_22895001 D20-c2 2174 chrX 22996322 22996340 chrX 23003551 23003573 roo 5 7232 1.5 2.0 1.8 1.8 7251 chrX 22996322 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 D20-c2 2175 chrY 311341 311345 chrY 311459 311462 9 118 0.5 0.0 0.2 7.5 121 chrY 311341 intergenic not near genes chrY 311402 intergenic not near genes chrY 311462 intergenic not near genes chrY_9_310001 chrY_310001 D20-c2