SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47440	47481	chr2L	52570	52611	jockey	46	5130	18.5	18.0	18.2	2.4	5171	chr2L	47440	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52611	intron	Cda5 -	chr2L_46_50001	chr2L_50001	D17-c3
11	chr2L	347867	347875	chr2L	355392	355400	blood	5	7525	16.0	9.0	12.5	0.4	7533	chr2L	347867	3` UTR	Plc21C +	chr2L	351634	intron	Plc21C +	chr2L	355400	3` UTR	Plc21C +	chr2L_5_350001	chr2L_350001	D17-c3
12	chr2L	347876	347918	chr2L	355390	355443	blood	16	7524	6.5	9.0	7.8	1.8	7567	chr2L	347876	3` UTR	Plc21C +	chr2L	351660	intron	Plc21C +	chr2L	355443	3` UTR	Plc21C +	chr2L_16_350001	chr2L_350001	D17-c3
24	chr2L	686912	686921	chr2L	695977	695986	roo	7	9064	19.0	9.5	14.2	0.5	9074	chr2L	686912	intron	ds -	chr2L	691449	intron	ds -	chr2L	695986	intron	ds -	chr2L_7_690001	chr2L_690001	D17-c3
25	chr2L	686924	686946	chr2L	695968	696011	roo	15	9063	10.0	7.5	8.8	1.5	9087	chr2L	686924	intron	ds -	chr2L	691468	intron	ds -	chr2L	696011	intron	ds -	chr2L_15_690001	chr2L_690001	D17-c3
30	chr2L	770443	770456	chr2L	772249	772262	Bari1	9	1805	26.5	19.0	22.8	0.4	1819	chr2L	770443	intergenic	not near genes	chr2L	771352	intergenic	not near genes	chr2L	772262	intergenic	CR44614 +	chr2L_9_770001	chr2L_770001	D17-c3
31	chr2L	770457	770491	chr2L	772248	772297	Bari1	30	1803	12.0	19.0	15.5	1.8	1840	chr2L	770457	intergenic	not near genes	chr2L	771377	intergenic	not near genes	chr2L	772297	intergenic	CR44614 +	chr2L_30_770001	chr2L_770001	D17-c3
39	chr2L	976852	976885	chr2L	984513	984544	roo	8	7661	38.5	19.5	29.0	0.3	7692	chr2L	976852	intergenic	not near genes	chr2L	980698	intergenic	not near genes	chr2L	984544	intergenic	not near genes	chr2L_8_980001	chr2L_980001	D17-c3
44	chr2L	1220108	1220156	chr2L	1227599	1227647	blood	14	7491	25.5	11.0	18.2	0.7	7539	chr2L	1220108	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227647	intron	CG42329 +	chr2L_14_1220001	chr2L_1220001	D17-c3
45	chr2L	1301733	1301775	chr2L	1302297	1302339	gypsy	16	564	6.0	7.5	6.8	2.1	606	chr2L	1301733	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302339	intergenic	not near genes	chr2L_16_1300001	chr2L_1300001	D17-c3
57	chr2L	1570670	1570717	chr2L	1573567	1573614	F-element	17	2897	7.0	10.0	8.5	1.8	2944	chr2L	1570670	intron	haf +	chr2L	1572142	intron	haf +	chr2L	1573614	intron	haf +	chr2L_17_1570001	chr2L_1570001	D17-c3
64	chr2L	1678933	1679006	chr2L	1686441	1686496	blood	9	7502	0.5	7.5	4.0	1.8	7563	chr2L	1678933	intron	chinmo +	chr2L	1682714	intron	chinmo +	chr2L	1686496	intron	chinmo +	chr2L_9_1680001	chr2L_1680001	D17-c3
65	chr2L	1711335	1711389	chr2L	1711684	1711708	mdg3	31	348	14.0	15.0	14.5	2.0	373	chr2L	1711335	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711522	3` UTR	frtz -	chr2L	1711708	3` UTR	frtz -	chr2L_31_1710001	chr2L_1710001	D17-c3
75	chr2L	2100381	2100407	chr2L	2109546	2109550	roo	17	9165	10.5	11.5	11.0	1.4	9169	chr2L	2100381	intron	dpr3 -	chr2L	2104966	intron	dpr3 -	chr2L	2109550	intron	dpr3 -	chr2L_17_2100001	chr2L_2100001	D17-c3
76	chr2L	2112089	2112143	chr2L	2119774	2119830	opus	28	7672	5.5	13.5	9.5	2.7	7741	chr2L	2112089	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119830	intergenic	not near genes	chr2L_28_2115001	chr2L_2115001	D17-c3
81	chr2L	2294018	2294070	chr2L	2299245	2299284	copia	28	5223	7.5	12.0	9.8	2.6	5266	chr2L	2294018	intergenic	not near genes	chr2L	2296651	intergenic	not near genes	chr2L	2299284	intergenic	not near genes	chr2L_28_2295001	chr2L_2295001	D17-c3
86	chr2L	2565529	2565561	chr2L	2571627	2571659	297	17	6097	5.0	14.0	9.5	1.6	6130	chr2L	2565529	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571659	exon	Cyp309a2 -	chr2L_17_2565001	chr2L_2565001	D17-c3
92	chr2L	2661187	2661220	chr2L	2663050	2663083	I-element	11	1858	9.0	15.5	12.2	0.8	1896	chr2L	2661187	intergenic	not near genes	chr2L	2662135	intergenic	not near genes	chr2L	2663083	intergenic	not near genes	chr2L_11_2660001	chr2L_2660001	D17-c3
93	chr2L	2661227	2661230	chr2L	2663035	2663078	I-element	5	1829	8.0	10.5	9.2	0.5	1851	chr2L	2661227	intergenic	not near genes	chr2L	2662152	intergenic	not near genes	chr2L	2663078	intergenic	not near genes	chr2L_5_2660001	chr2L_2660001	D17-c3
96	chr2L	2772587	2772625	chr2L	2779194	2779234	297	16	6606	13.0	11.0	12.0	1.2	6647	chr2L	2772587	3` UTR	Syt1 -	chr2L	2775910	intron	Syt1 -	chr2L	2779234	3` UTR	Syt1 -	chr2L_16_2775001	chr2L_2775001	D17-c3
102	chr2L	3073010	3073054	chr2L	3078238	3078282	copia	25	5228	7.0	7.5	7.2	3.0	5272	chr2L	3073010	intron	toc -	chr2L	3075646	intron	toc -	chr2L	3078282	intron	toc -	chr2L_25_3075001	chr2L_3075001	D17-c3
111	chr2L	3202720	3202768	chr2L	3210174	3210222	mdg1	12	7454	4.5	0.5	2.5	3.4	7502	chr2L	3202720	intergenic	not near genes	chr2L	3206471	intergenic	not near genes	chr2L	3210222	intergenic	CR45336 +	chr2L_12_3205001	chr2L_3205001	D17-c3
112	chr2L	3251473	3251517	chr2L	3259063	3259107	springer	12	7590	6.0	8.0	7.0	1.5	7634	chr2L	3251473	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259107	intergenic	not near genes	chr2L_12_3255001	chr2L_3255001	D17-c3
120	chr2L	3649763	3649805	chr2L	3654990	3655031	copia	11	5227	0.5	3.0	1.8	3.9	5268	chr2L	3649763	intron	for -	chr2L	3652397	intron	for -	chr2L	3655031	intron	for -	chr2L_11_3650001	chr2L_3650001	D17-c3
132	chr2L	4661818	4661854	chr2L	4669423	4669459	opus	21	7605	11.0	13.5	12.2	1.6	7641	chr2L	4661818	intergenic	not near genes	chr2L	4665638	intergenic	not near genes	chr2L	4669459	intergenic	not near genes	chr2L_21_4665001	chr2L_4665001	D17-c3
138	chr2L	4918150	4918190	chr2L	4923248	4923326	jockey	5	5106	4.5	0.5	2.5	1.4	5176	chr2L	4918150	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923326	intron	hoe1 -	chr2L_5_4920001	chr2L_4920001	D17-c3
146	chr2L	5342749	5342795	chr2L	5345154	5345200	Doc	11	2405	4.0	3.0	3.5	2.4	2451	chr2L	5342749	intergenic	not near genes	chr2L	5343974	intergenic	not near genes	chr2L	5345200	intergenic	not near genes	chr2L_11_5340001	chr2L_5340001	D17-c3
153	chr2L	5827688	5827738	chr2L	5836721	5836771	roo	16	9032	6.5	9.0	7.8	1.8	9083	chr2L	5827688	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836771	intron	TrissinR +	chr2L_16_5830001	chr2L_5830001	D17-c3
175	chr2L	6279617	6279652	chr2L	6279721	6279756	INE-1	15	104	5.5	1.5	3.5	3.3	139	chr2L	6279617	intron	Ddr +	chr2L	6279686	intron	Ddr +	chr2L	6279756	intron	Ddr +	chr2L_15_6275001	chr2L_6275001	D17-c3
179	chr2L	6363127	6363181	chr2L	6366074	6366132	Burdock	25	2948	6.5	8.5	7.5	2.9	3005	chr2L	6363127	intergenic	not near genes	chr2L	6364630	intergenic	not near genes	chr2L	6366132	intergenic	not near genes	chr2L_25_6360001	chr2L_6360001	D17-c3
181	chr2L	6426830	6426888	chr2L	6445114	6445173	roo	27	18285	9.5	12.0	10.8	2.3	18343	chr2L	6426830	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445173	exon	CG9527 -	chr2L_27_6435001	chr2L_6435001	D17-c3
198	chr2L	6876775	6876807	chr2L	6882965	6883023	diver	14	6210	7.0	4.5	5.8	2.1	6248	chr2L	6876775	intron	Nlg2 +	chr2L	6879899	intron	Nlg2 +	chr2L	6883023	intron	Nlg2 +	chr2L_14_6875001	chr2L_6875001	D17-c3
202	chr2L	6991392	6991434	chr2L	6998551	6998582	HMS-Beagle	4	7156	0.5	5.0	2.8	1.1	7190	chr2L	6991392	intron	uif -	chr2L	6994987	intron	uif -	chr2L	6998582	intron	uif -	chr2L_4_6990001	chr2L_6990001	D17-c3
215	chr2L	7343304	7343355	chr2L	7350444	7350496	roo	35	7140	11.5	7.5	9.5	3.3	7192	chr2L	7343304	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350496	intron	Wnt6 +	chr2L_35_7345001	chr2L_7345001	D17-c3
220	chr2L	7548098	7548113	chr2L	7550559	7550559	Burdock	4	2456	8.0	16.0	12.0	0.3	2461	chr2L	7548098	intron	RapGAP1 -	chr2L	7549328	intron	RapGAP1 -	chr2L	7550559	intron	RapGAP1 -	chr2L_4_7545001	chr2L_7545001	D17-c3
231	chr2L	7959016	7959071	chr2L	7960452	7960509	pogo	20	1436	6.0	1.0	3.5	4.4	1493	chr2L	7959016	intron	Snoo -	chr2L	7959762	intron	Snoo -	chr2L	7960509	intron	Snoo -	chr2L_20_7955001	chr2L_7955001	D17-c3
233	chr2L	7977064	7977080	chr2L	7984064	7984080	297	11	7000	32.0	17.5	24.8	0.4	7016	chr2L	7977064	intron	Snoo -	chr2L	7980572	intron	Snoo -	chr2L	7984080	intron,5` UTR	Snoo -,CG7231 +	chr2L_11_7980001	chr2L_7980001	D17-c3
234	chr2L	7977084	7977113	chr2L	7984063	7984113	297	18	6998	15.0	17.5	16.2	1.0	7029	chr2L	7977084	intron	Snoo -	chr2L	7980598	intron	Snoo -	chr2L	7984113	intron,5` UTR	Snoo -,CG7231 +	chr2L_18_7980001	chr2L_7980001	D17-c3
235	chr2L	8013592	8013608	chr2L	8018821	8018837	copia	9	5229	8.0	0.0	4.0	1.8	5245	chr2L	8013592	intron	Tg +	chr2L	8016214	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_9_8015001	chr2L_8015001	D17-c3
236	chr2L	8018816	8018834	chr2L	8023623	8023643	Doc	12	4809	0.0	9.5	4.8	2.1	4827	chr2L	8018816	intron	Tg +	chr2L	8021230	intron	Tg +	chr2L	8023643	intron	Tg +	chr2L_12_8020001	chr2L_8020001	D17-c3
243	chr2L	8452398	8452441	chr2L	8461594	8461637	roo	21	9195	12.0	12.0	12.0	1.6	9239	chr2L	8452398	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461637	intron	fu12 -	chr2L_21_8455001	chr2L_8455001	D17-c3
248	chr2L	8594442	8594491	chr2L	8601521	8601570	297	12	7079	9.0	4.5	6.8	1.5	7128	chr2L	8594442	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598006	intron	Sema-1a +	chr2L	8601570	intron	Sema-1a +	chr2L_12_8595001	chr2L_8595001	D17-c3
250	chr2L	8723091	8723144	chr2L	8731493	8731546	Tirant	35	8402	7.0	10.5	8.8	3.6	8455	chr2L	8723091	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731546	intron	raw -	chr2L_35_8725001	chr2L_8725001	D17-c3
264	chr2L	9000259	9000307	chr2L	9007794	9007842	roo	48	7535	9.5	1.5	5.5	7.4	7583	chr2L	9000259	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007842	intergenic	not near genes	chr2L_48_9000001	chr2L_9000001	D17-c3
272	chr2L	9217948	9217992	chr2L	9222760	9222804	Doc	34	4811	15.0	16.0	15.5	2.1	4856	chr2L	9217948	intron	tai +	chr2L	9220376	intron	tai +	chr2L	9222804	intron	tai +	chr2L_34_9220001	chr2L_9220001	D17-c3
273	chr2L	9217993	9217996	chr2L	9222759	9222808	Doc	4	4800	15.0	16.0	15.5	0.2	4815	chr2L	9217993	intron	tai +	chr2L	9220400	intron	tai +	chr2L	9222808	intron	tai +	chr2L_4_9220001	chr2L_9220001	D17-c3
286	chr2L	9393480	9393522	chr2L	9396472	9396513	jockey	7	2991	1.0	9.0	5.0	1.2	3033	chr2L	9393480	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396513	intron	Shawl -	chr2L_7_9390001	chr2L_9390001	D17-c3
305	chr2L	9973702	9973758	chr2L	9980846	9980897	HMS-Beagle	64	7142	13.5	14.0	13.8	4.3	7195	chr2L	9973702	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980897	intergenic	not near genes	chr2L_64_9975001	chr2L_9975001	D17-c3
312	chr2L	10138173	10138194	chr2L	10143438	10143459	Rt1c	22	5265	7.5	16.5	12.0	1.7	5286	chr2L	10138173	intron	CG44153 -	chr2L	10140816	intron	CG44153 -	chr2L	10143459	intron	CG44153 -	chr2L_22_10140001	chr2L_10140001	D17-c3
314	chr2L	10156296	10156345	chr2L	10163791	10163840	blood	15	7495	8.0	5.0	6.5	2.0	7544	chr2L	10156296	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160068	intron	CG44153 -	chr2L	10163840	intron	CG44153 -	chr2L_15_10160001	chr2L_10160001	D17-c3
330	chr2L	10592818	10592869	chr2L	10600505	10600556	opus	21	7687	3.0	4.5	3.8	4.4	7738	chr2L	10592818	intron	Trim9 +	chr2L	10596687	intron	Trim9 +	chr2L	10600556	intron	Trim9 +	chr2L_21_10595001	chr2L_10595001	D17-c3
340	chr2L	10862843	10862876	chr2L	10864467	10864481	Rt1c	26	1627	6.5	9.0	7.8	3.0	1638	chr2L	10862843	3` UTR	CR43807 -	chr2L	10863662	intron	CR43807 -	chr2L	10864481	3` UTR	CR43807 -	chr2L_26_10860001	chr2L_10860001	D17-c3
343	chr2L	10946938	10946975	chr2L	10956168	10956215	roo	25	9237	11.5	17.5	14.5	1.6	9277	chr2L	10946938	intron	dpr2 -	chr2L	10951576	intron	dpr2 -	chr2L	10956215	intron	dpr2 -	chr2L_25_10950001	chr2L_10950001	D17-c3
351	chr2L	11315248	11315271	chr2L	11317672	11317700	G2	10	2428	6.0	3.5	4.8	1.7	2452	chr2L	11315248	intergenic	not near genes	chr2L	11316474	intergenic	not near genes	chr2L	11317700	intergenic	not near genes	chr2L_10_11315001	chr2L_11315001	D17-c3
365	chr2L	11540568	11540614	chr2L	11547995	11548041	Tabor	14	7426	1.5	4.5	3.0	3.5	7473	chr2L	11540568	intergenic	not near genes	chr2L	11544304	intergenic	not near genes	chr2L	11548041	intergenic	not near genes	chr2L_14_11540001	chr2L_11540001	D17-c3
367	chr2L	11563615	11563660	chr2L	11568844	11568889	copia	15	5229	7.5	7.0	7.2	1.8	5274	chr2L	11563615	intergenic	not near genes	chr2L	11566252	intergenic	not near genes	chr2L	11568889	intergenic	not near genes	chr2L_15_11565001	chr2L_11565001	D17-c3
368	chr2L	11614047	11614086	chr2L	11615547	11615606	hopper2	12	1507	4.5	2.5	3.5	2.7	1559	chr2L	11614047	intron	kek2 +	chr2L	11614826	intron	kek2 +	chr2L	11615606	intron	kek2 +	chr2L_12_11610001	chr2L_11610001	D17-c3
373	chr2L	11713482	11713537	chr2L	11720975	11721030	blood	15	7493	7.5	5.5	6.5	2.0	7548	chr2L	11713482	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721030	intergenic	CR44143 +	chr2L_15_11715001	chr2L_11715001	D17-c3
385	chr2L	12067307	12067360	chr2L	12074384	12074427	297	7	7069	4.5	1.0	2.8	1.8	7120	chr2L	12067307	intergenic	not near genes	chr2L	12070867	intergenic	not near genes	chr2L	12074427	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	D17-c3
398	chr2L	12558295	12558350	chr2L	12565449	12565504	HMS-Beagle	11	7154	3.5	3.5	3.5	2.4	7209	chr2L	12558295	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565504	intergenic	not near genes	chr2L_11_12560001	chr2L_12560001	D17-c3
400	chr2L	12728897	12728949	chr2L	12729161	12729213	pogo	32	264	8.5	9.5	9.0	3.2	316	chr2L	12728897	intron	MRP +	chr2L	12729055	intron	MRP +	chr2L	12729213	exon	MRP +	chr2L_32_12725001	chr2L_12725001	D17-c3
401	chr2L	12731034	12731084	chr2L	12735826	12735876	F-element	29	4791	11.5	9.5	10.5	2.5	4842	chr2L	12731034	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735876	intron	MRP +	chr2L_29_12730001	chr2L_12730001	D17-c3
402	chr2L	12739153	12739199	chr2L	12743959	12744005	Doc	33	4806	13.5	16.0	14.8	2.1	4852	chr2L	12739153	exon	MRP +	chr2L	12741579	intron	MRP +	chr2L	12744005	exon	MRP +	chr2L_33_12740001	chr2L_12740001	D17-c3
404	chr2L	12763803	12763870	chr2L	12764040	12764095	BS	6	231	0.0	0.0	0.0	6.0	292	chr2L	12763803	intergenic	not near genes	chr2L	12763949	intergenic	not near genes	chr2L	12764095	intergenic	not near genes	chr2L_6_12760001	chr2L_12760001	D17-c3
406	chr2L	12781785	12781814	chr2L	12789250	12789289	Quasimodo	15	7474	22.5	6.0	14.2	1.0	7504	chr2L	12781785	intergenic	not near genes	chr2L	12785537	intergenic	not near genes	chr2L	12789289	intergenic	not near genes	chr2L_15_12785001	chr2L_12785001	D17-c3
407	chr2L	12791582	12791627	chr2L	12795282	12795327	F-element	14	3693	3.5	6.5	5.0	2.3	3745	chr2L	12791582	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795327	intergenic	not near genes	chr2L_14_12790001	chr2L_12790001	D17-c3
411	chr2L	12861671	12861727	chr2L	12863163	12863197	hobo	25	1488	9.0	10.0	9.5	2.4	1526	chr2L	12861671	intergenic	not near genes	chr2L	12862434	intergenic	not near genes	chr2L	12863197	intergenic	not near genes	chr2L_25_12860001	chr2L_12860001	D17-c3
413	chr2L	12894013	12894033	chr2L	12895495	12895525	hobo	13	1488	26.5	20.5	23.5	0.5	1512	chr2L	12894013	intergenic	not near genes	chr2L	12894769	intergenic	not near genes	chr2L	12895525	intergenic	not near genes	chr2L_13_12890001	chr2L_12890001	D17-c3
414	chr2L	12894035	12894036	chr2L	12895492	12895528	hobo	4	1476	24.5	20.0	22.2	0.2	1493	chr2L	12894035	intergenic	not near genes	chr2L	12894782	intergenic	not near genes	chr2L	12895528	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	D17-c3
415	chr2L	12894038	12894049	chr2L	12895483	12895541	hobo	14	1481	17.5	17.0	17.2	0.8	1503	chr2L	12894038	intergenic	not near genes	chr2L	12894790	intergenic	not near genes	chr2L	12895541	intergenic	not near genes	chr2L_14_12890001	chr2L_12890001	D17-c3
417	chr2L	12933835	12933880	chr2L	12941327	12941372	blood	29	7490	10.0	16.5	13.2	2.0	7537	chr2L	12933835	intergenic	not near genes	chr2L	12937604	intergenic	not near genes	chr2L	12941372	intergenic	not near genes	chr2L_29_12935001	chr2L_12935001	D17-c3
430	chr2L	13405626	13405679	chr2L	13410448	13410501	Doc	35	4822	9.5	12.0	10.8	3.0	4875	chr2L	13405626	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410501	intron	CG7110 +	chr2L_35_13405001	chr2L_13405001	D17-c3
432	chr2L	13449446	13449490	chr2L	13456907	13456951	Quasimodo	18	7461	5.5	13.5	9.5	1.7	7505	chr2L	13449446	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456951	intron	CG42784 +	chr2L_18_13450001	chr2L_13450001	D17-c3
433	chr2L	13481432	13481469	chr2L	13482064	13482086	jockey	30	631	19.5	23.5	21.5	1.3	654	chr2L	13481432	intron	CG42784 +	chr2L	13481759	intron	CG42784 +	chr2L	13482086	intron	CG42784 +	chr2L_30_13480001	chr2L_13480001	D17-c3
435	chr2L	13522259	13522287	chr2L	13527590	13527618	Transpac	14	5330	2.0	6.0	4.0	2.8	5359	chr2L	13522259	intron	B4 -	chr2L	13524938	intron	B4 -	chr2L	13527618	intron	B4 -	chr2L_14_13520001	chr2L_13520001	D17-c3
443	chr2L	13761783	13761835	chr2L	13762919	13762971	Doc	14	1136	10.0	7.0	8.5	1.5	1188	chr2L	13761783	intron	TM9SF4 +	chr2L	13762377	intron	TM9SF4 +	chr2L	13762971	intron	TM9SF4 +	chr2L_14_13760001	chr2L_13760001	D17-c3
446	chr2L	13853067	13853110	chr2L	13862242	13862285	roo	25	9175	9.5	5.0	7.2	3.0	9218	chr2L	13853067	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862285	intron	CenG1A +	chr2L_25_13855001	chr2L_13855001	D17-c3
469	chr2L	14642549	14642597	chr2L	14651737	14651785	roo	19	9188	8.5	6.0	7.2	2.3	9236	chr2L	14642549	intron	osp -	chr2L	14647167	intron	osp -	chr2L	14651785	intron	osp -	chr2L_19_14645001	chr2L_14645001	D17-c3
472	chr2L	14803855	14803909	chr2L	14809083	14809137	copia	22	5228	12.0	7.0	9.5	2.1	5282	chr2L	14803855	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809137	intergenic	not near genes	chr2L_22_14805001	chr2L_14805001	D17-c3
476	chr2L	14889928	14889982	chr2L	14890378	14890432	jockey	21	450	4.5	3.0	3.8	4.4	504	chr2L	14889928	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890432	intergenic	not near genes	chr2L_21_14890001	chr2L_14890001	D17-c3
495	chr2L	15446024	15446080	chr2L	15453518	15453574	blood	19	7493	5.5	3.0	4.2	3.7	7550	chr2L	15446024	intergenic	not near genes	chr2L	15449799	intergenic	not near genes	chr2L	15453574	intergenic	not near genes	chr2L_19_15445001	chr2L_15445001	D17-c3
499	chr2L	15586385	15586440	chr2L	15593462	15593516	297	18	7077	5.5	5.0	5.2	2.9	7131	chr2L	15586385	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593516	intergenic	not near genes	chr2L_18_15585001	chr2L_15585001	D17-c3
502	chr2L	15773548	15773581	chr2L	15773654	15773687	INE-1	10	106	3.5	2.0	2.8	2.6	139	chr2L	15773548	intergenic	CG31826 -	chr2L	15773618	intergenic	not near genes	chr2L	15773687	intergenic	not near genes	chr2L_10_15770001	chr2L_15770001	D17-c3
504	chr2L	15826869	15826893	chr2L	15829288	15829312	Tabor	8	2419	3.5	7.0	5.2	1.3	2443	chr2L	15826869	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829312	intergenic	not near genes	chr2L_8_15825001	chr2L_15825001	D17-c3
508	chr2L	15956001	15956005	chr2L	15957493	15957497	hobo	4	1492	20.0	8.0	14.0	0.3	1496	chr2L	15956001	intron	beat-Ib -	chr2L	15956749	intron	beat-Ib -	chr2L	15957497	intron	beat-Ib -	chr2L_4_15955001	chr2L_15955001	D17-c3
509	chr2L	15956013	15956057	chr2L	15957490	15957530	hobo	12	1486	7.0	7.0	7.0	1.5	1517	chr2L	15956013	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957530	intron	beat-Ib -	chr2L_12_15955001	chr2L_15955001	D17-c3
515	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	55	145889	46.5	35.0	40.8	1.3	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_55_16140001	chr2L_16140001	D17-c3
516	chr2L	16141142	16141191	chr2L	16146374	16146423	copia	10	5232	4.0	5.5	4.8	1.7	5281	chr2L	16141142	intergenic	not near genes	chr2L	16143782	intergenic	not near genes	chr2L	16146423	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	D17-c3
517	chr2L	16153710	16153749	chr2L	16160789	16160828	297	26	7078	8.5	9.0	8.8	2.7	7118	chr2L	16153710	intergenic	not near genes	chr2L	16157269	intergenic	not near genes	chr2L	16160828	intergenic	not near genes	chr2L_26_16155001	chr2L_16155001	D17-c3
520	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	73	145889	46.5	35.0	40.8	1.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_73_16140001	chr2L_16140001	D17-c3
523	chr2L	16280235	16280282	chr2L	16281430	16281478	1360	31	1195	8.0	12.5	10.2	2.8	1243	chr2L	16280235	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281478	intron	crp -	chr2L_31_16280001	chr2L_16280001	D17-c3
531	chr2L	16511962	16511994	chr2L	16519114	16519146	HMS-Beagle	5	7150	3.5	5.5	4.5	0.9	7184	chr2L	16511962	intron	CG5953 -	chr2L	16515554	intron	CG5953 -	chr2L	16519146	intron	CG5953 -	chr2L_5_16515001	chr2L_16515001	D17-c3
539	chr2L	16852793	16852808	chr2L	16859960	16859975	Doc4-element	6	7167	10.5	9.5	10.0	0.5	7182	chr2L	16852793	intergenic	CG31810 -	chr2L	16856384	intron	CG31809 -	chr2L	16859975	intergenic	CG6012 -	chr2L_6_16855001	chr2L_16855001	D17-c3
544	chr2L	16958084	16958134	chr2L	16962897	16962947	Doc	18	4813	3.0	3.0	3.0	4.5	4863	chr2L	16958084	intergenic	not near genes	chr2L	16960516	intergenic	not near genes	chr2L	16962947	intergenic	not near genes	chr2L_18_16960001	chr2L_16960001	D17-c3
564	chr2L	17167542	17167594	chr2L	17167808	17167860	pogo	18	266	3.5	5.5	4.5	3.3	318	chr2L	17167542	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167701	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167860	intron,intron	CG34106 +,beat-IIIa +	chr2L_18_17165001	chr2L_17165001	D17-c3
567	chr2L	17199139	17199184	chr2L	17200631	17200676	hobo	15	1492	4.5	1.5	3.0	3.8	1537	chr2L	17199139	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200676	intron	beat-IIIc -	chr2L_15_17195001	chr2L_17195001	D17-c3
570	chr2L	17273172	17273222	chr2L	17277980	17278017	F-element	18	4807	10.5	6.5	8.5	1.9	4845	chr2L	17273172	intergenic	not near genes	chr2L	17275594	intergenic	not near genes	chr2L	17278017	intergenic	not near genes	chr2L_18_17275001	chr2L_17275001	D17-c3
585	chr2L	17687493	17687521	chr2L	17692263	17692291	F-element	14	4770	5.5	8.0	6.8	1.8	4798	chr2L	17687493	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692291	intron	CadN -	chr2L_14_17685001	chr2L_17685001	D17-c3
589	chr2L	17727854	17727859	chr2L	17729339	17729351	hobo	4	1490	8.0	14.0	11.0	0.3	1497	chr2L	17727854	intron	CadN -	chr2L	17728602	intron	CadN -	chr2L	17729351	intron	CadN -	chr2L_4_17725001	chr2L_17725001	D17-c3
590	chr2L	17727860	17727877	chr2L	17729335	17729369	hobo	14	1487	6.0	13.5	9.8	1.3	1509	chr2L	17727860	intron	CadN -	chr2L	17728614	intron	CadN -	chr2L	17729369	intron	CadN -	chr2L_14_17725001	chr2L_17725001	D17-c3
592	chr2L	17819899	17819950	chr2L	17825127	17825178	copia	27	5228	7.0	10.0	8.5	2.8	5279	chr2L	17819899	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825178	intron	CadN2 -	chr2L_27_17820001	chr2L_17820001	D17-c3
595	chr2L	17911938	17911989	chr2L	17914141	17914200	pogo	27	2205	10.0	6.5	8.2	2.9	2262	chr2L	17911938	intergenic	not near genes	chr2L	17913069	intergenic	not near genes	chr2L	17914200	intergenic	CG43271 -	chr2L_27_17910001	chr2L_17910001	D17-c3
597	chr2L	17951929	17951975	chr2L	17953421	17953467	hobo	16	1492	7.0	6.0	6.5	2.1	1538	chr2L	17951929	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953467	intergenic	not near genes	chr2L_16_17950001	chr2L_17950001	D17-c3
605	chr2L	18051857	18051900	chr2L	18061029	18061072	roo	7	9171	10.0	6.0	8.0	0.8	9215	chr2L	18051857	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061072	intron	rdo +	chr2L_7_18055001	chr2L_18055001	D17-c3
620	chr2L	18408008	18408034	chr2L	18412817	18412843	Doc	11	4809	12.5	6.0	9.2	1.1	4835	chr2L	18408008	intergenic	not near genes	chr2L	18410426	intergenic	not near genes	chr2L	18412843	intergenic	not near genes	chr2L_11_18410001	chr2L_18410001	D17-c3
646	chr2L	19147361	19147398	chr2L	19154421	19154458	297	9	7060	3.0	11.0	7.0	1.1	7097	chr2L	19147361	intron	brat +	chr2L	19150910	intron	brat +	chr2L	19154458	intron	brat +	chr2L_9_19150001	chr2L_19150001	D17-c3
653	chr2L	19344992	19345004	chr2L	19357226	19357227	blood	6	12231	12.0	8.0	10.0	0.5	12235	chr2L	19344992	intron	dnt -	chr2L	19351110	intron	dnt -	chr2L	19357227	intron	dnt -	chr2L_6_19350001	chr2L_19350001	D17-c3
654	chr2L	19345005	19345033	chr2L	19357224	19357267	blood	15	12232	7.0	8.0	7.5	1.8	12262	chr2L	19345005	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357267	intron	dnt -	chr2L_15_19350001	chr2L_19350001	D17-c3
669	chr2L	19620074	19620130	chr2L	19621088	19621128	jockey	35	1012	6.5	5.0	5.8	5.1	1054	chr2L	19620074	intron	Lar +	chr2L	19620601	intron	Lar +	chr2L	19621128	intron	Lar +	chr2L_35_19620001	chr2L_19620001	D17-c3
670	chr2L	19652550	19652599	chr2L	19674011	19674060	opus	17	21455	6.0	6.5	6.2	2.4	21510	chr2L	19652550	intron	Lar +	chr2L	19663305	intron	Lar +	chr2L	19674060	intron	Lar +	chr2L_17_19660001	chr2L_19660001	D17-c3
672	chr2L	19703515	19703566	chr2L	19712676	19712727	roo	24	9160	6.0	11.0	8.5	2.5	9212	chr2L	19703515	intron	Lar +	chr2L	19708121	intron	Lar +	chr2L	19712727	intron	Lar +	chr2L_24_19705001	chr2L_19705001	D17-c3
674	chr2L	19737333	19737389	chr2L	19740827	19740853	1360	14	3486	15.0	14.5	14.8	0.9	3520	chr2L	19737333	intergenic	Nf-YB +	chr2L	19739093	intergenic	not near genes	chr2L	19740853	intergenic	not near genes	chr2L_14_19735001	chr2L_19735001	D17-c3
676	chr2L	19762782	19762836	chr2L	19763049	19763103	pogo	13	267	10.0	5.0	7.5	1.5	321	chr2L	19762782	exon	fbp -	chr2L	19762942	intron	fbp -	chr2L	19763103	intron	fbp -	chr2L_13_19760001	chr2L_19760001	D17-c3
685	chr2L	20005850	20005905	chr2L	20010950	20011006	flea	22	5100	6.0	6.5	6.2	3.1	5156	chr2L	20005850	intron	CG43861 -	chr2L	20008428	intron	CG43861 -	chr2L	20011006	intron	CG43861 -	chr2L_22_20005001	chr2L_20005001	D17-c3
690	chr2L	20272090	20272135	chr2L	20282826	20282871	copia	23	10736	8.5	6.0	7.2	2.8	10781	chr2L	20272090	intergenic	not near genes	chr2L	20277480	intergenic	not near genes	chr2L	20282871	intergenic	not near genes	chr2L_23_20275001	chr2L_20275001	D17-c3
695	chr2L	20303160	20303187	chr2L	20310653	20310680	blood	10	7493	8.5	3.0	5.8	1.5	7520	chr2L	20303160	intergenic	not near genes	chr2L	20306920	intergenic	not near genes	chr2L	20310680	intergenic	not near genes	chr2L_10_20305001	chr2L_20305001	D17-c3
698	chr2L	20372204	20372243	chr2L	20372470	20372509	pogo	17	266	2.0	9.0	5.5	2.6	305	chr2L	20372204	intergenic	Ugt37a1 -	chr2L	20372356	intergenic	Ugt37a1 -	chr2L	20372509	exon	Ugt37a1 -	chr2L_17_20370001	chr2L_20370001	D17-c3
702	chr2L	20568635	20568687	chr2L	20569050	20569101	X-element	23	414	4.0	4.5	4.2	4.4	466	chr2L	20568635	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569101	intron	CR45347 +	chr2L_23_20565001	chr2L_20565001	D17-c3
703	chr2L	20576202	20576249	chr2L	20583695	20583743	blood	15	7493	3.5	4.5	4.0	3.0	7541	chr2L	20576202	intergenic	CR45347 +	chr2L	20579972	intergenic	not near genes	chr2L	20583743	3` UTR	CR44909 -	chr2L_15_20575001	chr2L_20575001	D17-c3
707	chr2L	20639483	20639524	chr2L	20639784	20639825	INE-1	6	301	20.5	14.5	17.5	0.3	342	chr2L	20639483	intergenic	not near genes	chr2L	20639654	intergenic	CG31680 +	chr2L	20639825	intergenic	CG31680 +	chr2L_6_20635001	chr2L_20635001	D17-c3
718	chr2L	20835788	20835840	chr2L	20836530	20836582	Quasimodo	10	741	10.5	12.5	11.5	0.8	794	chr2L	20835788	5` UTR	Oseg5 -	chr2L	20836185	intergenic	Oseg5 -,Spn38F -	chr2L	20836582	intergenic	Spn38F -	chr2L_10_20835001	chr2L_20835001	D17-c3
720	chr2L	20891512	20891546	chr2L	20896638	20896672	jockey	8	5126	3.5	7.0	5.2	1.3	5160	chr2L	20891512	intron,intron	CG43739 -,sky -	chr2L	20894092	intron,intron	CG43739 -,sky -	chr2L	20896672	intron,intron	CG43739 -,sky -	chr2L_8_20890001	chr2L_20890001	D17-c3
721	chr2L	20901428	20901438	chr2L	20902617	20902627	1360	6	1189	18.5	3.0	10.8	0.5	1199	chr2L	20901428	intron,intron	CG43739 -,sky -	chr2L	20902028	intron,intron	CG43739 -,sky -	chr2L	20902627	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	D17-c3
726	chr2L	20976630	20976661	chr2L	20981470	20981501	X-element	17	4840	7.5	10.0	8.8	1.7	4871	chr2L	20976630	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981501	intron	CG42238 -	chr2L_17_20975001	chr2L_20975001	D17-c3
730	chr2L	21020252	21020302	chr2L	21023954	21024004	NOF	20	3702	4.0	12.0	8.0	2.2	3752	chr2L	21020252	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21024004	intron	CG42238 -	chr2L_20_21020001	chr2L_21020001	D17-c3
731	chr2L	21041114	21041166	chr2L	21049400	21049452	Tirant	20	8286	4.0	5.5	4.8	3.4	8338	chr2L	21041114	intron	CG42238 -	chr2L	21045283	intron	CG42238 -	chr2L	21049452	intron	CG42238 -	chr2L_20_21045001	chr2L_21045001	D17-c3
737	chr2L	21347532	21347574	chr2L	21355029	21355071	blood	10	7497	5.0	3.5	4.2	1.9	7539	chr2L	21347532	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355071	intron	Tsp39D +	chr2L_10_21350001	chr2L_21350001	D17-c3
740	chr2L	21597024	21597059	chr2L	21604793	21604828	roo	10	7769	3.5	11.0	7.2	1.2	7804	chr2L	21597024	intergenic	not near genes	chr2L	21600926	intergenic	not near genes	chr2L	21604828	intergenic	not near genes	chr2L_10_21600001	chr2L_21600001	D17-c3
742	chr2L	21691802	21691833	chr2L	21698297	21698328	Burdock	6	6495	7.5	1.0	4.2	1.2	6526	chr2L	21691802	intron	CG31619 +	chr2L	21695065	intron	CG31619 +	chr2L	21698328	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	D17-c3
758	chr2L	21981666	21981713	chr2L	21990853	21990888	roo	27	9187	7.0	10.5	8.8	2.8	9222	chr2L	21981666	exon	CG2528 -	chr2L	21986277	intron	CG2528 -	chr2L	21990888	exon	CG2528 -	chr2L_27_21985001	chr2L_21985001	D17-c3
773	chr2L	22258595	22258643	chr2L	22260744	22260792	G6	37	2149	7.5	11.5	9.5	3.5	2197	chr2L	22258595	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260792	intergenic	not near genes	chr2L_37_22255001	chr2L_22255001	D17-c3
776	chr2L	22341267	22341296	chr2L	22341487	22341516	G-element	10	220	41.5	35.5	38.5	0.3	249	chr2L	22341267	intron	CG17018 +	chr2L	22341392	intron	CG17018 +	chr2L	22341516	intron	CG17018 +	chr2L_10_22340001	chr2L_22340001	D17-c3
777	chr2L	22548921	22548927	chr2L	22550171	22550176	1360	5	1250	13.0	25.0	19.0	0.2	1255	chr2L	22548921	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550176	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	D17-c3
778	chr2L	22581948	22582001	chr2L	22583762	22583815	S-element	15	1814	4.0	5.0	4.5	2.7	1867	chr2L	22581948	intron	CG17494 +	chr2L	22582882	intron	CG17494 +	chr2L	22583815	intron	CG17494 +	chr2L_15_22580001	chr2L_22580001	D17-c3
780	chr2L	22679804	22679814	chr2L	22684601	22684611	F-element	4	4797	6.5	10.5	8.5	0.4	4807	chr2L	22679804	intron	CG40006 -	chr2L	22682208	intron	CG40006 -	chr2L	22684611	intron	CG40006 -	chr2L_4_22680001	chr2L_22680001	D17-c3
782	chr2L	22776395	22776449	chr2L	22778209	22778263	S-element	17	1814	3.5	4.5	4.0	3.4	1868	chr2L	22776395	intergenic	not near genes	chr2L	22777329	intergenic	not near genes	chr2L	22778263	intergenic	not near genes	chr2L_17_22775001	chr2L_22775001	D17-c3
787	chr2R	469958	469980	chr2R	473224	473235	F-element	4	3263	4.5	4.0	4.2	0.8	3277	chr2R	469958	intergenic	not near genes	chr2R	471596	intergenic	not near genes	chr2R	473235	intergenic	not near genes	chr2R_4_470001	chr2R_470001	D17-c3
788	chr2R	529320	529352	chr2R	537964	538002	Max-element	14	8648	8.0	13.0	10.5	1.2	8682	chr2R	529320	intron	CG40378 +	chr2R	533661	intron	CG40378 +	chr2R	538002	intron	CG40378 +	chr2R_14_530001	chr2R_530001	D17-c3
790	chr2R	1082373	1082377	chr2R	1087135	1087178	Doc	4	4791	13.5	17.0	15.2	0.2	4805	chr2R	1082373	intron	rl +	chr2R	1084776	intron	rl +	chr2R	1087178	intron	rl +	chr2R_4_1080001	chr2R_1080001	D17-c3
793	chr2R	1516583	1516587	chr2R	1521336	1521340	1731	4	4753	35.5	28.0	31.8	0.1	4757	chr2R	1516583	exon	Maf1 -	chr2R	1518962	intron	Maf1 -	chr2R	1521340	5` UTR	Maf1 -	chr2R_4_1515001	chr2R_1515001	D17-c3
794	chr2R	1516588	1516603	chr2R	1521334	1521356	1731	12	4752	31.0	26.0	28.5	0.4	4768	chr2R	1516588	exon	Maf1 -	chr2R	1518972	intron	Maf1 -	chr2R	1521356	5` UTR	Maf1 -	chr2R_12_1515001	chr2R_1515001	D17-c3
799	chr2R	2110484	2110498	chr2R	2118067	2118081	17.6	8	7582	26.5	13.5	20.0	0.4	7597	chr2R	2110484	intron	CG17684 -	chr2R	2114282	intron	CG17684 -	chr2R	2118081	intron	CG17684 -	chr2R_8_2110001	chr2R_2110001	D17-c3
800	chr2R	2498967	2498971	chr2R	2508139	2508143	roo	4	9172	12.5	7.0	9.8	0.4	9176	chr2R	2498967	intron	MFS17 -	chr2R	2503555	intron	MFS17 -	chr2R	2508143	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	D17-c3
801	chr2R	2498973	2499014	chr2R	2508133	2508180	roo	10	9170	5.0	7.0	6.0	1.4	9207	chr2R	2498973	intron	MFS17 -	chr2R	2503576	intron	MFS17 -	chr2R	2508180	intron	MFS17 -	chr2R_10_2500001	chr2R_2500001	D17-c3
803	chr2R	2591510	2591520	chr2R	2594211	2594221	roo	4	2701	51.0	32.0	41.5	0.1	2711	chr2R	2591510	intergenic	not near genes	chr2R	2592866	intergenic	not near genes	chr2R	2594221	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	D17-c3
808	chr2R	3144061	3144109	chr2R	3393363	3393412	Doc	12	249303	24.0	28.5	26.2	0.4	249351	chr2R	3144061	intron	CG42596 +	chr2R	3268736	intergenic	not near genes	chr2R	3393412	intergenic	not near genes	chr2R_12_3265001	chr2R_3265001	D17-c3
812	chr2R	3532606	3532633	chr2R	3536074	3536101	Doc	4	3468	2.0	3.0	2.5	1.1	3495	chr2R	3532606	intergenic	not near genes	chr2R	3534354	intergenic	not near genes	chr2R	3536101	intergenic	not near genes	chr2R_4_3530001	chr2R_3530001	D17-c3
818	chr2R	4622941	4622984	chr2R	4624110	4624128	1360	7	1173	16.5	18.5	17.5	0.4	1187	chr2R	4622941	intergenic	CR44101 -	chr2R	4623534	intergenic	not near genes	chr2R	4624128	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	D17-c3
820	chr2R	4750321	4750364	chr2R	4751502	4751546	1360	6	1182	8.5	11.5	10.0	0.5	1225	chr2R	4750321	intron	conu +	chr2R	4750934	intron	conu +	chr2R	4751546	intron	conu +	chr2R_6_4750001	chr2R_4750001	D17-c3
823	chr2R	4838848	4838900	chr2R	4840396	4840448	transib2	16	1548	7.5	10.5	9.0	1.6	1600	chr2R	4838848	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840448	intergenic	not near genes	chr2R_16_4835001	chr2R_4835001	D17-c3
824	chr2R	4870725	4870741	chr2R	4871254	4871277	R1A1-element	4	533	23.0	29.5	26.2	0.1	552	chr2R	4870725	intergenic	not near genes	chr2R	4871001	intergenic	not near genes	chr2R	4871277	intergenic	not near genes	chr2R_4_4870001	chr2R_4870001	D17-c3
846	chr2R	5417977	5418016	chr2R	5420634	5420673	Burdock	16	2657	5.5	6.0	5.8	2.4	2696	chr2R	5417977	intron	laccase2 +	chr2R	5419325	intron	laccase2 +	chr2R	5420673	intron	laccase2 +	chr2R_16_5415001	chr2R_5415001	D17-c3
853	chr2R	5543214	5543221	chr2R	5547323	5547330	invader1	4	4109	14.0	18.0	16.0	0.2	4116	chr2R	5543214	intron	CG30438 +	chr2R	5545272	intron	CG30438 +	chr2R	5547330	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	D17-c3
868	chr2R	5869254	5869298	chr2R	5874355	5874399	flea	18	5100	7.5	8.5	8.0	2.0	5145	chr2R	5869254	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874399	intergenic	not near genes	chr2R_18_5870001	chr2R_5870001	D17-c3
872	chr2R	5902133	5902191	chr2R	5909717	5909775	17.6	18	7584	4.0	4.0	4.0	3.6	7642	chr2R	5902133	intron	CG43366 +	chr2R	5905954	intron	CG43366 +	chr2R	5909775	intron	CG43366 +	chr2R_18_5905001	chr2R_5905001	D17-c3
877	chr2R	6096707	6096751	chr2R	6101923	6101945	BS	15	5219	9.5	11.5	10.5	1.3	5238	chr2R	6096707	intron	EcR -	chr2R	6099326	intron	EcR -	chr2R	6101945	intron	EcR -	chr2R_15_6095001	chr2R_6095001	D17-c3
884	chr2R	6494505	6494548	chr2R	6499292	6499335	F-element	13	4786	3.0	3.0	3.0	3.2	4830	chr2R	6494505	intergenic	not near genes	chr2R	6496920	intergenic	not near genes	chr2R	6499335	intergenic	not near genes	chr2R_13_6495001	chr2R_6495001	D17-c3
892	chr2R	6579749	6579799	chr2R	6584860	6584910	flea	16	5111	4.5	5.5	5.0	2.7	5161	chr2R	6579749	intron	jing +	chr2R	6582330	intron	jing +	chr2R	6584910	intron	jing +	chr2R_16_6580001	chr2R_6580001	D17-c3
901	chr2R	6952147	6952178	chr2R	6959752	6959783	opus	11	7605	5.0	2.0	3.5	2.4	7636	chr2R	6952147	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955965	intron,intron	mim -,CheB42c -	chr2R	6959783	intron,intron	mim -,CheB42c -	chr2R_11_6955001	chr2R_6955001	D17-c3
904	chr2R	7139946	7139951	chr2R	7141463	7141463	hopper2	4	1516	7.0	18.5	12.8	0.3	1517	chr2R	7139946	intergenic	not near genes	chr2R	7140704	intergenic	not near genes	chr2R	7141463	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	D17-c3
907	chr2R	7196555	7196595	chr2R	7201349	7201395	F-element	8	4799	5.5	5.5	5.5	1.2	4840	chr2R	7196555	intron	pk +	chr2R	7198975	intron	pk +	chr2R	7201395	intron	pk +	chr2R_8_7195001	chr2R_7195001	D17-c3
908	chr2R	7209860	7209869	chr2R	7217646	7217655	roo	6	7786	3.5	8.0	5.8	0.9	7795	chr2R	7209860	intron	pk +	chr2R	7213758	intron	pk +	chr2R	7217655	intron	pk +	chr2R_6_7210001	chr2R_7210001	D17-c3
909	chr2R	7235798	7235847	chr2R	7240915	7240964	jockey	16	5116	10.0	4.0	7.0	2.0	5166	chr2R	7235798	intergenic	not near genes	chr2R	7238381	intergenic	not near genes	chr2R	7240964	intergenic	not near genes	chr2R_16_7235001	chr2R_7235001	D17-c3
916	chr2R	7434873	7434911	chr2R	7439199	7439237	Juan	16	4325	7.0	9.0	8.0	1.8	4364	chr2R	7434873	intergenic	so +	chr2R	7437055	intergenic	not near genes	chr2R	7439237	intergenic	not near genes	chr2R_16_7435001	chr2R_7435001	D17-c3
917	chr2R	7608384	7608441	chr2R	7613612	7613667	I-element	12	5228	1.0	0.0	0.5	8.0	5283	chr2R	7608384	intron	CG1358 -	chr2R	7611026	intron	CG1358 -	chr2R	7613667	intron	CG1358 -	chr2R_12_7610001	chr2R_7610001	D17-c3
925	chr2R	7815649	7815696	chr2R	7822143	7822190	Burdock	25	6494	6.5	10.0	8.2	2.7	6541	chr2R	7815649	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822190	3` UTR	cathD -	chr2R_25_7815001	chr2R_7815001	D17-c3
928	chr2R	7862208	7862249	chr2R	7867347	7867387	flea	6	5136	17.0	4.0	10.5	0.5	5179	chr2R	7862208	intron	Dgk -	chr2R	7864798	intron	Dgk -	chr2R	7867387	intron	Dgk -	chr2R_6_7860001	chr2R_7860001	D17-c3
929	chr2R	7869168	7869211	chr2R	7873979	7874022	Doc	13	4811	8.0	5.5	6.8	1.7	4854	chr2R	7869168	intron	Dgk -	chr2R	7871595	intron	Dgk -	chr2R	7874022	intron	Dgk -	chr2R_13_7870001	chr2R_7870001	D17-c3
946	chr2R	8160922	8160943	chr2R	8161032	8161058	1360	15	115	39.5	45.0	42.2	0.3	136	chr2R	8160922	exon	CG8708 -	chr2R	8160990	intron	CG8708 -	chr2R	8161058	intron	CG8708 -	chr2R_15_8160001	chr2R_8160001	D17-c3
948	chr2R	8330841	8330881	chr2R	8331352	8331392	roo	17	511	9.5	6.5	8.0	1.9	551	chr2R	8330841	intron	pdm3 +	chr2R	8331116	intron	pdm3 +	chr2R	8331392	intron	pdm3 +	chr2R_17_8330001	chr2R_8330001	D17-c3
950	chr2R	8398187	8398241	chr2R	8402993	8403047	Doc	26	4806	8.0	11.5	9.8	2.4	4860	chr2R	8398187	intron	CG2121 -	chr2R	8400617	intron	CG2121 -	chr2R	8403047	intron	CG2121 -	chr2R_26_8400001	chr2R_8400001	D17-c3
951	chr2R	8416302	8416309	chr2R	8417151	8417158	I-element	5	849	10.0	12.0	11.0	0.4	856	chr2R	8416302	intergenic	not near genes	chr2R	8416730	intergenic	CG43296 -	chr2R	8417158	intergenic	CG43296 -	chr2R_5_8415001	chr2R_8415001	D17-c3
957	chr2R	8722740	8722792	chr2R	8723006	8723046	pogo	20	263	8.0	7.5	7.8	2.3	306	chr2R	8722740	intron	CG14767 -	chr2R	8722893	intron	CG14767 -	chr2R	8723046	intron	CG14767 -	chr2R_20_8720001	chr2R_8720001	D17-c3
960	chr2R	8777902	8777946	chr2R	8784131	8784175	diver	11	6227	3.0	6.5	4.8	1.9	6273	chr2R	8777902	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784175	intergenic	not near genes	chr2R_11_8780001	chr2R_8780001	D17-c3
970	chr2R	9151284	9151329	chr2R	9157779	9157824	Burdock	24	6495	8.0	8.5	8.2	2.6	6540	chr2R	9151284	exon	CG30345 +	chr2R	9154554	intergenic	not near genes	chr2R	9157824	intergenic	CG8008 -	chr2R_24_9150001	chr2R_9150001	D17-c3
972	chr2R	9212672	9212712	chr2R	9213183	9213223	roo	17	511	15.0	12.0	13.5	1.2	551	chr2R	9212672	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213223	5` UTR	CR45309 +	chr2R_17_9210001	chr2R_9210001	D17-c3
982	chr2R	9352252	9352256	chr2R	9361426	9361432	roo	4	9176	9.0	13.0	11.0	0.3	9180	chr2R	9352252	intron	CG13954 -	chr2R	9356842	intron	CG13954 -	chr2R	9361432	intron	CG13954 -	chr2R_4_9355001	chr2R_9355001	D17-c3
988	chr2R	9480054	9480099	chr2R	9490610	9490655	roo	27	10556	12.0	10.5	11.2	2.2	10601	chr2R	9480054	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_27_9485001	chr2R_9485001	D17-c3
1000	chr2R	9726592	9726640	chr2R	9734168	9734216	17.6	22	7576	7.5	12.0	9.8	2.0	7624	chr2R	9726592	intron	sqa -	chr2R	9730404	intron	sqa -	chr2R	9734216	intron	sqa -	chr2R_22_9730001	chr2R_9730001	D17-c3
1001	chr2R	9871044	9871073	chr2R	9871545	9871584	roo	13	510	0.5	11.5	6.0	1.9	540	chr2R	9871044	intron	cbx -	chr2R	9871314	intron	cbx -	chr2R	9871584	intron,5` UTR	cbx -,CG18446 +	chr2R_13_9870001	chr2R_9870001	D17-c3
1002	chr2R	9945413	9945444	chr2R	9945634	9945665	BS	11	219	15.5	3.5	9.5	1.0	252	chr2R	9945413	intron	Mef2 -	chr2R	9945539	intron	Mef2 -	chr2R	9945665	intron	Mef2 -	chr2R_11_9945001	chr2R_9945001	D17-c3
1003	chr2R	9945445	9945467	chr2R	9945632	9945688	BS	9	214	11.0	3.0	7.0	1.1	243	chr2R	9945445	intron	Mef2 -	chr2R	9945566	intron	Mef2 -	chr2R	9945688	intron	Mef2 -	chr2R_9_9945001	chr2R_9945001	D17-c3
1006	chr2R	10005827	10005877	chr2R	10007017	10007067	1360	35	1182	6.0	11.5	8.8	3.6	1240	chr2R	10005827	intron	Pka-R2 -	chr2R	10006447	intron	Pka-R2 -	chr2R	10007067	intron	Pka-R2 -	chr2R_35_10005001	chr2R_10005001	D17-c3
1016	chr2R	10176859	10176913	chr2R	10186051	10186105	roo	17	9191	3.0	4.5	3.8	3.5	9246	chr2R	10176859	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186105	intron	KCNQ -	chr2R_17_10180001	chr2R_10180001	D17-c3
1040	chr2R	10585573	10585582	chr2R	10594181	10594190	Tirant	8	8608	10.5	11.0	10.8	0.7	8617	chr2R	10585573	intron	psq +	chr2R	10589882	intron	psq +	chr2R	10594190	intron	psq +	chr2R_8_10585001	chr2R_10585001	D17-c3
1041	chr2R	10622339	10622355	chr2R	10637129	10637145	mdg1	7	14790	7.5	3.5	5.5	1.1	14806	chr2R	10622339	intron	CG11883 +	chr2R	10629742	intron	CG11883 +	chr2R	10637145	intron	CG11883 +	chr2R_7_10625001	chr2R_10625001	D17-c3
1051	chr2R	10979646	10979686	chr2R	10980141	10980178	297	9	493	3.5	4.0	3.8	1.9	532	chr2R	10979646	intergenic	not near genes	chr2R	10979912	intergenic	not near genes	chr2R	10980178	intergenic	not near genes	chr2R_9_10975001	chr2R_10975001	D17-c3
1052	chr2R	11009798	11009847	chr2R	11018997	11019024	roo	10	9196	6.5	6.5	6.5	1.3	9226	chr2R	11009798	intron	luna -	chr2R	11014411	intron	luna -	chr2R	11019024	intron	luna -	chr2R_10_11010001	chr2R_11010001	D17-c3
1053	chr2R	11019857	11019907	chr2R	11024948	11024971	jockey	12	5086	5.5	5.5	5.5	1.8	5114	chr2R	11019857	intron	luna -	chr2R	11022414	intron	luna -	chr2R	11024971	intron	luna -	chr2R_12_11020001	chr2R_11020001	D17-c3
1054	chr2R	11134085	11134142	chr2R	11134351	11134408	pogo	26	265	4.5	4.0	4.2	5.0	323	chr2R	11134085	intergenic	not near genes	chr2R	11134246	intergenic	not near genes	chr2R	11134408	intergenic	not near genes	chr2R_26_11130001	chr2R_11130001	D17-c3
1056	chr2R	11207792	11207843	chr2R	11208009	11208060	BS	25	217	8.5	8.0	8.2	2.7	268	chr2R	11207792	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208060	intron	shn +	chr2R_25_11205001	chr2R_11205001	D17-c3
1060	chr2R	11297591	11297649	chr2R	11301937	11301995	flea	12	4346	10.5	2.0	6.2	1.7	4404	chr2R	11297591	intergenic	CG42336 -	chr2R	11299793	intergenic	not near genes	chr2R	11301995	5` UTR	CG7741 +	chr2R_12_11295001	chr2R_11295001	D17-c3
1061	chr2R	11415496	11415549	chr2R	11418670	11418723	opus	22	3172	4.0	6.5	5.2	3.5	3227	chr2R	11415496	intron	Drip -	chr2R	11417110	intron	Drip -	chr2R	11418723	intron	Drip -	chr2R_22_11415001	chr2R_11415001	D17-c3
1062	chr2R	11472624	11472680	chr2R	11473846	11473902	pogo	33	1222	6.5	8.0	7.2	4.0	1278	chr2R	11472624	intergenic	not near genes	chr2R	11473263	intergenic	not near genes	chr2R	11473902	intergenic	not near genes	chr2R_33_11470001	chr2R_11470001	D17-c3
1079	chr2R	12481142	12481164	chr2R	12482956	12482993	roo	14	1826	12.5	15.0	13.8	0.9	1851	chr2R	12481142	exon	Dh44-R2 +	chr2R	12482068	intron	Dh44-R2 +	chr2R	12482993	intron	Dh44-R2 +	chr2R_14_12480001	chr2R_12480001	D17-c3
1080	chr2R	12501671	12501721	chr2R	12503858	12503900	Rt1c	15	2184	6.5	7.5	7.0	1.9	2229	chr2R	12501671	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503900	intron	fdl -	chr2R_15_12500001	chr2R_12500001	D17-c3
1090	chr2R	12707511	12707549	chr2R	12715902	12715940	roo	11	8391	1.0	4.0	2.5	3.1	8429	chr2R	12707511	intron	CG42663 +	chr2R	12711726	intron	CG42663 +	chr2R	12715940	intron	CG42663 +	chr2R_11_12710001	chr2R_12710001	D17-c3
1093	chr2R	12789284	12789320	chr2R	12797655	12797708	roo	14	8384	5.0	4.5	4.8	2.4	8424	chr2R	12789284	intron,3` UTR	sca +,CR45137 -	chr2R	12793496	intron,intron	sca +,CR45137 -	chr2R	12797708	intron,3` UTR	sca +,CR45137 -	chr2R_14_12790001	chr2R_12790001	D17-c3
1095	chr2R	12819442	12819479	chr2R	12824525	12824567	jockey	22	5085	4.0	12.5	8.2	2.4	5125	chr2R	12819442	intergenic	not near genes	chr2R	12822004	intergenic	not near genes	chr2R	12824567	intergenic	not near genes	chr2R_22_12820001	chr2R_12820001	D17-c3
1104	chr2R	13136819	13136862	chr2R	13141642	13141685	Doc	37	4822	9.5	11.0	10.2	3.3	4866	chr2R	13136819	exon	Cap-G +	chr2R	13139252	intron	Cap-G +	chr2R	13141685	intron	Cap-G +	chr2R_37_13135001	chr2R_13135001	D17-c3
1118	chr2R	13580474	13580527	chr2R	13580849	13580902	jockey	19	375	7.5	13.0	10.2	1.7	428	chr2R	13580474	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580902	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_19_13580001	chr2R_13580001	D17-c3
1125	chr2R	13728108	13728155	chr2R	13735790	13735837	opus	11	7682	6.5	4.5	5.5	1.7	7729	chr2R	13728108	intron	fas +	chr2R	13731972	intron	fas +	chr2R	13735837	intron	fas +	chr2R_11_13730001	chr2R_13730001	D17-c3
1130	chr2R	13905585	13905629	chr2R	13907592	13907636	Rt1a	26	2006	10.5	18.5	14.5	1.7	2051	chr2R	13905585	intron	shot -	chr2R	13906610	intron	shot -	chr2R	13907636	intron	shot -	chr2R_26_13905001	chr2R_13905001	D17-c3
1140	chr2R	14467286	14467319	chr2R	14476469	14476502	roo	13	9183	3.5	8.5	6.0	1.9	9216	chr2R	14467286	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476502	5` UTR	CR44462 +	chr2R_13_14470001	chr2R_14470001	D17-c3
1141	chr2R	14497362	14497395	chr2R	14498550	14498586	1360	9	1188	3.5	5.0	4.2	1.7	1224	chr2R	14497362	3` UTR	Cpsf160 -	chr2R	14497974	intron	Cpsf160 -	chr2R	14498586	3` UTR	Cpsf160 -	chr2R_9_14495001	chr2R_14495001	D17-c3
1155	chr2R	14889193	14889212	chr2R	14897826	14897845	Max-element	10	8633	12.5	0.0	6.2	1.4	8652	chr2R	14889193	intergenic	Cyp6a8 -	chr2R	14893519	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	D17-c3
1161	chr2R	15004703	15004753	chr2R	15005057	15005106	jockey	22	354	5.5	5.0	5.2	3.5	403	chr2R	15004703	intergenic	not near genes	chr2R	15004904	intergenic	not near genes	chr2R	15005106	intergenic	not near genes	chr2R_22_15000001	chr2R_15000001	D17-c3
1162	chr2R	15015434	15015487	chr2R	15022883	15022936	mdg1	19	7449	5.0	8.0	6.5	2.5	7502	chr2R	15015434	intron	hbs +	chr2R	15019185	intron	hbs +	chr2R	15022936	intron	hbs +	chr2R_19_15015001	chr2R_15015001	D17-c3
1165	chr2R	15119301	15119350	chr2R	15127797	15127855	Tirant	19	8504	5.5	3.0	4.2	3.7	8554	chr2R	15119301	intron	chn +	chr2R	15123578	intron	chn +	chr2R	15127855	intron	chn +	chr2R_19_15120001	chr2R_15120001	D17-c3
1185	chr2R	16061700	16061717	chr2R	16064359	16064377	Burdock	6	2658	9.0	3.5	6.2	0.8	2677	chr2R	16061700	intergenic	not near genes	chr2R	16063038	intergenic	not near genes	chr2R	16064377	intergenic	not near genes	chr2R_6_16060001	chr2R_16060001	D17-c3
1195	chr2R	16539624	16539667	chr2R	16544858	16544901	copia	13	5234	7.0	7.5	7.2	1.6	5277	chr2R	16539624	intergenic	not near genes	chr2R	16542262	intergenic	not near genes	chr2R	16544901	intergenic	not near genes	chr2R_13_16540001	chr2R_16540001	D17-c3
1201	chr2R	17147223	17147264	chr2R	17152279	17152320	jockey	13	5056	5.0	8.0	6.5	1.7	5097	chr2R	17147223	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152320	intergenic	not near genes	chr2R_13_17145001	chr2R_17145001	D17-c3
1203	chr2R	17236496	17236529	chr2R	17241725	17241758	copia	13	5229	3.5	9.0	6.2	1.8	5262	chr2R	17236496	intron	mbl +	chr2R	17239127	intron	mbl +	chr2R	17241758	intron	mbl +	chr2R_13_17235001	chr2R_17235001	D17-c3
1205	chr2R	17485891	17485950	chr2R	17490686	17490743	F-element	17	4794	6.5	5.5	6.0	2.4	4852	chr2R	17485891	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488317	intron	NT5E-2 +	chr2R	17490743	intron	NT5E-2 +	chr2R_17_17485001	chr2R_17485001	D17-c3
1217	chr2R	18045652	18045699	chr2R	18046029	18046076	jockey	10	377	3.0	3.0	3.0	2.5	424	chr2R	18045652	intergenic	not near genes	chr2R	18045864	intergenic	not near genes	chr2R	18046076	intergenic	CG5767 -	chr2R_10_18045001	chr2R_18045001	D17-c3
1218	chr2R	18111674	18111705	chr2R	18115567	18115598	F-element	12	3893	6.0	4.0	5.0	2.0	3924	chr2R	18111674	intergenic	not near genes	chr2R	18113636	intergenic	not near genes	chr2R	18115598	intergenic	not near genes	chr2R_12_18110001	chr2R_18110001	D17-c3
1224	chr2R	18358371	18358418	chr2R	18372606	18372655	roo	11	14237	4.5	3.5	4.0	2.2	14284	chr2R	18358371	intergenic	not near genes	chr2R	18365513	intergenic	not near genes	chr2R	18372655	intergenic	not near genes	chr2R_11_18365001	chr2R_18365001	D17-c3
1228	chr2R	18487813	18487852	chr2R	18495289	18495347	blood	11	7481	1.0	8.0	4.5	2.0	7534	chr2R	18487813	intron	CG30116 -	chr2R	18491580	intron	CG30116 -	chr2R	18495347	intron	CG30116 -	chr2R_11_18490001	chr2R_18490001	D17-c3
1232	chr2R	18575780	18575808	chr2R	18581993	18582021	3S18	6	6213	15.5	7.5	11.5	0.5	6241	chr2R	18575780	intron	GEFmeso -	chr2R	18578900	intron	GEFmeso -	chr2R	18582021	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	D17-c3
1233	chr2R	18575809	18575827	chr2R	18581984	18582040	3S18	20	6198	12.5	6.5	9.5	1.9	6231	chr2R	18575809	intron	GEFmeso -	chr2R	18578924	intron	GEFmeso -	chr2R	18582040	intron	GEFmeso -	chr2R_20_18575001	chr2R_18575001	D17-c3
1234	chr2R	18590845	18590898	chr2R	18600022	18600075	roo	32	9177	5.5	5.0	5.2	5.2	9230	chr2R	18590845	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600075	intron	GEFmeso -	chr2R_32_18595001	chr2R_18595001	D17-c3
1262	chr2R	19715833	19715857	chr2R	19723327	19723351	blood	18	7493	13.0	12.5	12.8	1.3	7518	chr2R	19715833	intergenic	not near genes	chr2R	19719592	intergenic	not near genes	chr2R	19723351	intergenic	not near genes	chr2R_18_19715001	chr2R_19715001	D17-c3
1264	chr2R	19776571	19776623	chr2R	19779919	19779969	jockey	24	3348	7.0	5.0	6.0	3.4	3398	chr2R	19776571	intergenic	not near genes	chr2R	19778270	intergenic	not near genes	chr2R	19779969	intergenic	not near genes	chr2R_24_19775001	chr2R_19775001	D17-c3
1267	chr2R	19914823	19914871	chr2R	19922260	19922308	mdg1	15	7436	10.0	8.5	9.2	1.5	7485	chr2R	19914823	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922308	intergenic	not near genes	chr2R_15_19915001	chr2R_19915001	D17-c3
1270	chr2R	19957406	19957463	chr2R	19962632	19962690	copia	26	5226	7.0	10.0	8.5	2.7	5284	chr2R	19957406	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962690	intergenic	not near genes	chr2R_26_19960001	chr2R_19960001	D17-c3
1272	chr2R	20069223	20069273	chr2R	20071878	20071928	opus	23	2655	4.5	5.0	4.8	4.0	2705	chr2R	20069223	intergenic	not near genes	chr2R	20070576	intergenic	not near genes	chr2R	20071928	intergenic	not near genes	chr2R_23_20070001	chr2R_20070001	D17-c3
1273	chr2R	20088022	20088024	chr2R	20088155	20088157	1360	4	133	3.0	5.5	4.2	0.8	135	chr2R	20088022	intergenic	not near genes	chr2R	20088090	intergenic	not near genes	chr2R	20088157	intergenic	not near genes	chr2R_4_20085001	chr2R_20085001	D17-c3
1281	chr2R	20739418	20739468	chr2R	20744211	20744261	F-element	28	4792	9.0	12.5	10.8	2.4	4843	chr2R	20739418	intron	dpr +	chr2R	20741840	intron	dpr +	chr2R	20744261	intron	dpr +	chr2R_28_20740001	chr2R_20740001	D17-c3
1283	chr2R	20783288	20783330	chr2R	20788085	20788127	F-element	17	4796	4.5	7.0	5.8	2.5	4839	chr2R	20783288	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788127	intergenic	CG43666 -	chr2R_17_20785001	chr2R_20785001	D17-c3
1294	chr2R	21151097	21151138	chr2R	21153755	21153796	opus	17	2658	8.5	9.0	8.8	1.7	2699	chr2R	21151097	intron	CG30389 -	chr2R	21152446	intron	CG30389 -	chr2R	21153796	intron	CG30389 -	chr2R_17_21150001	chr2R_21150001	D17-c3
1314	chr2R	21738256	21738305	chr2R	21747441	21747490	roo	26	9181	5.0	9.5	7.2	3.2	9234	chr2R	21738256	intergenic	not near genes	chr2R	21742873	intergenic	not near genes	chr2R	21747490	intergenic	not near genes	chr2R_26_21740001	chr2R_21740001	D17-c3
1315	chr2R	21753067	21753112	chr2R	21753572	21753622	roo	16	510	5.5	8.0	6.8	2.1	555	chr2R	21753067	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753622	intergenic	not near genes	chr2R_16_21750001	chr2R_21750001	D17-c3
1317	chr2R	21809501	21809553	chr2R	21817766	21817818	roo	23	8265	8.0	5.0	6.5	3.1	8317	chr2R	21809501	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817818	intergenic	not near genes	chr2R_23_21810001	chr2R_21810001	D17-c3
1337	chr2R	22349671	22349717	chr2R	22351480	22351526	jockey	24	1808	6.0	9.0	7.5	2.8	1855	chr2R	22349671	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351526	intron	Liprin-gamma -	chr2R_24_22350001	chr2R_22350001	D17-c3
1338	chr2R	22360360	22360386	chr2R	22360818	22360828	jockey	10	456	11.5	9.5	10.5	0.9	468	chr2R	22360360	intron	Liprin-gamma -	chr2R	22360594	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_10_22360001	chr2R_22360001	D17-c3
1345	chr2R	22525725	22525776	chr2R	22529305	22529356	jockey	22	3578	5.0	6.0	5.5	3.4	3631	chr2R	22525725	intron	px -	chr2R	22527540	intron	px -	chr2R	22529356	intron	px -	chr2R_22_22525001	chr2R_22525001	D17-c3
1347	chr2R	22580415	22580438	chr2R	22586584	22586607	diver	4	6169	5.5	3.0	4.2	0.8	6192	chr2R	22580415	intron	dnr1 -	chr2R	22583511	intron	dnr1 -	chr2R	22586607	intron	dnr1 -	chr2R_4_22580001	chr2R_22580001	D17-c3
1352	chr2R	22774941	22774997	chr2R	22775385	22775426	jockey	27	443	8.5	10.0	9.2	2.6	485	chr2R	22774941	intron	CG42260 -	chr2R	22775184	intron	CG42260 -	chr2R	22775426	intron	CG42260 -	chr2R_27_22775001	chr2R_22775001	D17-c3
1355	chr2R	22843028	22843045	chr2R	22845019	22845036	flea	8	1991	8.5	11.5	10.0	0.7	2008	chr2R	22843028	intergenic	CG9826 +	chr2R	22844032	intergenic	not near genes	chr2R	22845036	intergenic	not near genes	chr2R_8_22840001	chr2R_22840001	D17-c3
1376	chr2R	23529551	23529587	chr2R	23537152	23537188	412	24	7597	22.0	34.0	28.0	0.8	7637	chr2R	23529551	intron	bw -	chr2R	23533370	intron	bw -	chr2R	23537188	exon	bw -	chr2R_24_23530001	chr2R_23530001	D17-c3
1377	chr2R	23529589	23529604	chr2R	23537148	23537158	412	13	7586	14.5	27.0	20.8	0.6	7569	chr2R	23529589	intron	bw -	chr2R	23533374	intron	bw -	chr2R	23537158	exon	bw -	chr2R_13_23530001	chr2R_23530001	D17-c3
1388	chr2R	23877718	23877760	chr2R	23878214	23878256	297	6	494	5.5	7.0	6.2	0.8	538	chr2R	23877718	intergenic	ken +,TM4SF +	chr2R	23877987	intergenic	TM4SF +	chr2R	23878256	5` UTR	TM4SF +	chr2R_6_23875001	chr2R_23875001	D17-c3
1389	chr2R	23914284	23914332	chr2R	23921933	23921981	412	52	7649	17.5	28.5	23.0	2.2	7697	chr2R	23914284	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921981	exon	kcc +	chr2R_52_23915001	chr2R_23915001	D17-c3
1394	chr2R	24147041	24147097	chr2R	24154644	24154700	412	44	7600	11.5	13.0	12.2	3.3	7659	chr2R	24147041	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154700	intron	Dat +	chr2R_44_24150001	chr2R_24150001	D17-c3
1395	chr2R	24177211	24177259	chr2R	24184721	24184769	412	21	7509	9.0	7.5	8.2	2.3	7558	chr2R	24177211	3` UTR	Nop60B +	chr2R	24180990	intron	Nop60B +	chr2R	24184769	3` UTR	Nop60B +	chr2R_21_24180001	chr2R_24180001	D17-c3
1396	chr2R	24272801	24272813	chr2R	24272904	24272914	roo	7	101	32.5	29.0	30.8	0.2	113	chr2R	24272801	intergenic	not near genes	chr2R	24272858	intergenic	not near genes	chr2R	24272914	intergenic	not near genes	chr2R_7_24270001	chr2R_24270001	D17-c3
1398	chr2R	24353432	24353441	chr2R	24361819	24361828	roo	5	8387	7.5	10.5	9.0	0.5	8396	chr2R	24353432	intron,intron	bs +,CR44811 -	chr2R	24357630	intron,intron	bs +,CR44811 -	chr2R	24361828	intron,intron	bs +,CR44811 -	chr2R_5_24355001	chr2R_24355001	D17-c3
1404	chr2R	24647568	24647615	chr2R	24655150	24655197	412	24	7582	9.0	7.0	8.0	2.7	7629	chr2R	24647568	intergenic	not near genes	chr2R	24651382	intergenic	not near genes	chr2R	24655197	intergenic	not near genes	chr2R_24_24650001	chr2R_24650001	D17-c3
1405	chr2R	24727860	24727910	chr2R	24735393	24735428	mdg1	32	7530	10.5	9.5	10.0	2.9	7568	chr2R	24727860	intron	Mid1 -	chr2R	24731644	intron	Mid1 -	chr2R	24735428	intron	Mid1 -	chr2R_32_24730001	chr2R_24730001	D17-c3
1407	chr2R	24763586	24763611	chr2R	24765587	24765612	G2	22	1999	19.5	11.5	15.5	1.3	2026	chr2R	24763586	exon	CG3894 +	chr2R	24764599	intron	CG3894 +	chr2R	24765612	exon	CG3894 +	chr2R_22_24760001	chr2R_24760001	D17-c3
1408	chr2R	24763614	24763644	chr2R	24765585	24765639	G2	25	1996	9.0	9.5	9.2	2.5	2025	chr2R	24763614	exon	CG3894 +	chr2R	24764626	intron	CG3894 +	chr2R	24765639	exon	CG3894 +	chr2R_25_24760001	chr2R_24760001	D17-c3
1416	chr2R	25141636	25141682	chr2R	25159351	25159397	roo	11	17715	3.5	4.5	4.0	2.2	17761	chr2R	25141636	intergenic	not near genes	chr2R	25150516	intergenic	not near genes	chr2R	25159397	intergenic	not near genes	chr2R_11_25150001	chr2R_25150001	D17-c3
1424	chr3L	110195	110231	chr3L	119387	119423	roo	5	9192	3.5	3.5	3.5	1.1	9228	chr3L	110195	intergenic	not near genes	chr3L	114809	intergenic	not near genes	chr3L	119423	intergenic	not near genes	chr3L_5_110001	chr3L_110001	D17-c3
1427	chr3L	402665	402717	chr3L	409743	409795	297	18	7078	3.0	8.0	5.5	2.8	7130	chr3L	402665	intergenic	not near genes	chr3L	406230	intergenic	not near genes	chr3L	409795	intergenic	not near genes	chr3L_18_405001	chr3L_405001	D17-c3
1436	chr3L	789891	789946	chr3L	790401	790456	roo	14	510	4.0	3.5	3.8	2.9	565	chr3L	789891	intergenic	not near genes	chr3L	790174	intergenic	not near genes	chr3L	790456	intergenic	not near genes	chr3L_14_790001	chr3L_790001	D17-c3
1437	chr3L	857977	858031	chr3L	866482	866520	Tirant	19	8501	7.0	10.0	8.5	2.0	8543	chr3L	857977	intergenic	not near genes	chr3L	862248	intergenic	not near genes	chr3L	866520	5` UTR	CG12502 +	chr3L_19_860001	chr3L_860001	D17-c3
1439	chr3L	925173	925204	chr3L	932624	932655	mdg1	6	7451	1.5	4.0	2.8	1.6	7482	chr3L	925173	intron	Glut1 +	chr3L	928914	intron	Glut1 +	chr3L	932655	intron	Glut1 +	chr3L_6_925001	chr3L_925001	D17-c3
1441	chr3L	939754	939794	chr3L	940900	940940	jockey	13	1146	5.5	6.5	6.0	1.9	1186	chr3L	939754	intron	Glut1 +	chr3L	940347	intron	Glut1 +	chr3L	940940	intron	Glut1 +	chr3L_13_940001	chr3L_940001	D17-c3
1445	chr3L	1047382	1047385	chr3L	1055164	1055213	412	5	7806	2.5	3.5	3.0	1.2	7831	chr3L	1047382	intron	bab1 -	chr3L	1051298	intron	bab1 -	chr3L	1055213	intron	bab1 -	chr3L_5_1050001	chr3L_1050001	D17-c3
1449	chr3L	1154117	1154160	chr3L	1163292	1163335	roo	26	9175	7.5	7.0	7.2	3.2	9218	chr3L	1154117	intron	bab2 -	chr3L	1158726	intron	bab2 -	chr3L	1163335	intron	bab2 -	chr3L_26_1155001	chr3L_1155001	D17-c3
1450	chr3L	1219576	1219590	chr3L	1227332	1227348	412	8	7758	19.5	10.0	14.8	0.5	7772	chr3L	1219576	intron	mwh +	chr3L	1223462	intron	mwh +	chr3L	1227348	intron	mwh +	chr3L_8_1220001	chr3L_1220001	D17-c3
1451	chr3L	1219591	1219592	chr3L	1227328	1227335	412	6	7740	19.5	8.5	14.0	0.4	7744	chr3L	1219591	intron	mwh +	chr3L	1223463	intron	mwh +	chr3L	1227335	intron	mwh +	chr3L_6_1220001	chr3L_1220001	D17-c3
1452	chr3L	1219594	1219622	chr3L	1227327	1227380	412	32	7753	8.0	8.0	8.0	3.6	7786	chr3L	1219594	intron	mwh +	chr3L	1223487	intron	mwh +	chr3L	1227380	intron	mwh +	chr3L_32_1220001	chr3L_1220001	D17-c3
1463	chr3L	1424766	1424769	chr3L	1430021	1430039	Rt1a	7	5269	2.5	18.5	10.5	0.6	5273	chr3L	1424766	intron	Ptp61F -	chr3L	1427402	intron	Ptp61F -	chr3L	1430039	intron	Ptp61F -	chr3L_7_1425001	chr3L_1425001	D17-c3
1465	chr3L	1485716	1485743	chr3L	1486908	1486919	1360	17	1190	10.5	22.0	16.2	1.0	1203	chr3L	1485716	intron	stet -	chr3L	1486318	intron	stet -	chr3L	1486919	intron	stet -	chr3L_17_1485001	chr3L_1485001	D17-c3
1467	chr3L	1505976	1506031	chr3L	1513598	1513653	17.6	37	7622	12.5	10.5	11.5	3.0	7677	chr3L	1505976	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513653	intron,intron	Psa +,cue -	chr3L_37_1505001	chr3L_1505001	D17-c3
1473	chr3L	1740833	1740866	chr3L	1741101	1741134	pogo	7	268	14.0	8.0	11.0	0.6	301	chr3L	1740833	intron	Gk +	chr3L	1740984	intron	Gk +	chr3L	1741134	intron	Gk +	chr3L_7_1740001	chr3L_1740001	D17-c3
1482	chr3L	2108231	2108276	chr3L	2113460	2113505	copia	9	5229	4.5	5.0	4.8	1.6	5274	chr3L	2108231	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113505	intron	sls -	chr3L_9_2110001	chr3L_2110001	D17-c3
1498	chr3L	2447480	2447534	chr3L	2456661	2456700	roo	36	9180	7.0	10.0	8.5	3.8	9220	chr3L	2447480	intron	CG45186 +	chr3L	2452090	intron	CG45186 +	chr3L	2456700	intron	CG45186 +	chr3L_36_2450001	chr3L_2450001	D17-c3
1510	chr3L	2927820	2927867	chr3L	2936122	2936169	Tirant	13	8302	5.0	3.5	4.2	2.5	8349	chr3L	2927820	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936169	intron	Shab +	chr3L_13_2930001	chr3L_2930001	D17-c3
1512	chr3L	3061260	3061314	chr3L	3069868	3069922	Tirant	39	8607	13.0	12.0	12.5	2.9	8662	chr3L	3061260	intron	CG32486 -	chr3L	3065591	intron	CG32486 -	chr3L	3069922	intron	CG32486 -	chr3L_39_3065001	chr3L_3065001	D17-c3
1518	chr3L	3281417	3281469	chr3L	3281938	3281990	Doc	50	520	18.5	18.0	18.2	2.6	573	chr3L	3281417	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281990	intron	CG12017 +	chr3L_50_3280001	chr3L_3280001	D17-c3
1527	chr3L	3475050	3475111	chr3L	3475520	3475544	jockey	20	466	6.0	14.5	10.2	1.8	494	chr3L	3475050	intron	CG42324 +	chr3L	3475297	intron	CG42324 +	chr3L	3475544	intron	CG42324 +	chr3L_20_3475001	chr3L_3475001	D17-c3
1537	chr3L	3601276	3601331	chr3L	3606612	3606660	copia	35	5335	4.0	3.0	3.5	7.8	5384	chr3L	3601276	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606660	intron	Eip63E +	chr3L_35_3600001	chr3L_3600001	D17-c3
1551	chr3L	3833715	3833770	chr3L	3833981	3834036	pogo	14	266	3.5	3.0	3.2	3.3	321	chr3L	3833715	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834036	intron	enc +	chr3L_14_3830001	chr3L_3830001	D17-c3
1557	chr3L	4328729	4328753	chr3L	4336252	4336276	412	8	7523	7.5	9.5	8.5	0.8	7547	chr3L	4328729	intron	Cip4 -	chr3L	4332502	intron	Cip4 -	chr3L	4336276	exon	Cip4 -	chr3L_8_4330001	chr3L_4330001	D17-c3
1569	chr3L	4901109	4901160	chr3L	4907324	4907375	diver	9	6215	3.0	4.0	3.5	2.0	6266	chr3L	4901109	intergenic	CG13704 +	chr3L	4904242	intergenic	not near genes	chr3L	4907375	intergenic	not near genes	chr3L_9_4900001	chr3L_4900001	D17-c3
1570	chr3L	5034133	5034171	chr3L	5043310	5043348	roo	7	9177	5.0	1.0	3.0	1.8	9215	chr3L	5034133	intron	Con -	chr3L	5038740	intron	Con -	chr3L	5043348	intron	Con -	chr3L_7_5035001	chr3L_5035001	D17-c3
1571	chr3L	5045432	5045477	chr3L	5050238	5050283	Doc	13	4806	10.0	5.5	7.8	1.5	4851	chr3L	5045432	intron	Con -	chr3L	5047858	intron	Con -	chr3L	5050283	intron	Con -	chr3L_13_5045001	chr3L_5045001	D17-c3
1581	chr3L	5537695	5537734	chr3L	5538062	5538101	jockey	9	367	7.5	5.5	6.5	1.2	406	chr3L	5537695	intergenic	not near genes	chr3L	5537898	intergenic	not near genes	chr3L	5538101	intergenic	CG10625 -	chr3L_9_5535001	chr3L_5535001	D17-c3
1585	chr3L	5910011	5910034	chr3L	5910277	5910300	pogo	15	266	14.0	0.0	7.0	1.9	289	chr3L	5910011	intron	CG13288 +	chr3L	5910156	intron	CG13288 +	chr3L	5910300	intron	CG13288 +	chr3L_15_5910001	chr3L_5910001	D17-c3
1588	chr3L	5926296	5926346	chr3L	5926511	5926538	BS	22	213	5.5	9.5	7.5	2.6	242	chr3L	5926296	intron	Vap-33B +	chr3L	5926417	intron	Vap-33B +	chr3L	5926538	intron	Vap-33B +	chr3L_22_5925001	chr3L_5925001	D17-c3
1591	chr3L	6001662	6001665	chr3L	6004387	6004390	jockey	4	2725	14.5	2.0	8.2	0.4	2728	chr3L	6001662	intron	PVRAP +	chr3L	6003026	intron	PVRAP +	chr3L	6004390	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	D17-c3
1592	chr3L	6001683	6001712	chr3L	6004377	6004437	jockey	13	2721	6.0	2.0	4.0	2.6	2754	chr3L	6001683	intron	PVRAP +	chr3L	6003060	intron	PVRAP +	chr3L	6004437	intron	PVRAP +	chr3L_13_6000001	chr3L_6000001	D17-c3
1594	chr3L	6040351	6040394	chr3L	6042732	6042775	Doc	13	2381	1.0	4.0	2.5	3.7	2424	chr3L	6040351	intergenic	Jon65Aiv +	chr3L	6041563	intergenic	not near genes	chr3L	6042775	intergenic	not near genes	chr3L_13_6040001	chr3L_6040001	D17-c3
1602	chr3L	6220889	6220945	chr3L	6230066	6230122	roo	21	9177	9.0	5.5	7.2	2.6	9233	chr3L	6220889	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230122	intergenic	not near genes	chr3L_21_6225001	chr3L_6225001	D17-c3
1605	chr3L	6334984	6335041	chr3L	6335480	6335537	297	24	496	6.0	7.5	6.8	3.1	553	chr3L	6334984	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335537	intron	CG13300 -	chr3L_24_6335001	chr3L_6335001	D17-c3
1607	chr3L	6405644	6405680	chr3L	6432133	6432169	roo	12	26489	8.0	4.5	6.2	1.7	26525	chr3L	6405644	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432169	intron	CG42747 +	chr3L_12_6415001	chr3L_6415001	D17-c3
1610	chr3L	6620587	6620606	chr3L	6621052	6621061	Rt1c	14	464	8.0	20.5	14.2	0.9	474	chr3L	6620587	intergenic	not near genes	chr3L	6620824	intergenic	not near genes	chr3L	6621061	intergenic	not near genes	chr3L_14_6620001	chr3L_6620001	D17-c3
1617	chr3L	6781100	6781118	chr3L	6783138	6783156	Doc	6	2037	7.5	0.0	3.8	1.2	2056	chr3L	6781100	intergenic	not near genes	chr3L	6782128	intergenic	not near genes	chr3L	6783156	intergenic	not near genes	chr3L_6_6780001	chr3L_6780001	D17-c3
1621	chr3L	6855906	6855954	chr3L	6860715	6860763	Doc	14	4808	5.5	8.0	6.8	1.8	4857	chr3L	6855906	intergenic	not near genes	chr3L	6858334	intergenic	not near genes	chr3L	6860763	intergenic	not near genes	chr3L_14_6855001	chr3L_6855001	D17-c3
1623	chr3L	6887500	6887542	chr3L	6895017	6895059	roo	14	7517	7.5	0.5	4.0	2.8	7559	chr3L	6887500	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895059	intergenic	not near genes	chr3L_14_6890001	chr3L_6890001	D17-c3
1627	chr3L	6994890	6994906	chr3L	6995526	6995542	BS	4	636	0.0	9.0	4.5	0.7	652	chr3L	6994890	intergenic	bin +	chr3L	6995216	intergenic	not near genes	chr3L	6995542	intergenic	not near genes	chr3L_4_6995001	chr3L_6995001	D17-c3
1645	chr3L	7377291	7377316	chr3L	7380421	7380446	297	13	3130	8.5	0.5	4.5	2.4	3155	chr3L	7377291	intron	SMSr -	chr3L	7378868	intron	SMSr -	chr3L	7380446	intron	SMSr -	chr3L_13_7375001	chr3L_7375001	D17-c3
1647	chr3L	7498740	7498783	chr3L	7503542	7503585	F-element	19	4802	7.0	5.5	6.2	2.6	4845	chr3L	7498740	5` UTR	CG8539 -	chr3L	7501162	intergenic	not near genes	chr3L	7503585	intergenic	not near genes	chr3L_19_7500001	chr3L_7500001	D17-c3
1658	chr3L	7793695	7793736	chr3L	7800772	7800813	297	22	7077	12.5	10.0	11.2	1.8	7118	chr3L	7793695	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800813	intron	CG32369 -	chr3L_22_7795001	chr3L_7795001	D17-c3
1664	chr3L	7886482	7886539	chr3L	7889029	7889082	Stalker4	8	2543	0.0	4.5	2.2	2.5	2600	chr3L	7886482	intron	CG32365 +	chr3L	7887782	intron	CG32365 +	chr3L	7889082	intron	CG32365 +	chr3L_8_7885001	chr3L_7885001	D17-c3
1665	chr3L	7916813	7916854	chr3L	7926009	7926050	roo	12	9196	2.5	5.0	3.8	2.5	9237	chr3L	7916813	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926050	3` UTR	syd -	chr3L_12_7920001	chr3L_7920001	D17-c3
1666	chr3L	7985345	7985387	chr3L	7987698	7987740	NOF	16	2353	6.5	7.5	7.0	2.0	2395	chr3L	7985345	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987740	intron	nmo +	chr3L_16_7985001	chr3L_7985001	D17-c3
1670	chr3L	8481793	8481798	chr3L	8490930	8490959	roo	9	9159	17.5	12.0	14.8	0.6	9166	chr3L	8481793	intron	CG43163 -	chr3L	8486376	intron	CG43163 -	chr3L	8490959	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	D17-c3
1671	chr3L	8498275	8498324	chr3L	8505767	8505816	blood	13	7492	7.0	6.5	6.8	1.7	7541	chr3L	8498275	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505816	intron	CG43163 -	chr3L_13_8500001	chr3L_8500001	D17-c3
1676	chr3L	8791253	8791309	chr3L	8796698	8796753	I-element	15	5445	8.0	0.0	4.0	3.0	5500	chr3L	8791253	exon	Fhos +	chr3L	8794003	intron	Fhos +	chr3L	8796753	intron	Fhos +	chr3L_15_8790001	chr3L_8790001	D17-c3
1687	chr3L	9076902	9076948	chr3L	9084487	9084533	412	27	7584	13.0	8.5	10.8	2.3	7631	chr3L	9076902	exon	Tequila +	chr3L	9080718	intron	Tequila +	chr3L	9084533	exon	Tequila +	chr3L_27_9080001	chr3L_9080001	D17-c3
1690	chr3L	9130535	9130580	chr3L	9134320	9134366	412	27	3785	11.5	10.0	10.8	2.3	3831	chr3L	9130535	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134366	intergenic	Dhpr +	chr3L_27_9130001	chr3L_9130001	D17-c3
1691	chr3L	9164672	9164707	chr3L	9166164	9166199	hobo	16	1492	13.0	0.0	6.5	2.1	1527	chr3L	9164672	intron	Rdl -	chr3L	9165436	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_16_9165001	chr3L_9165001	D17-c3
1692	chr3L	9219221	9219269	chr3L	9219918	9219966	jockey	38	696	6.5	10.5	8.5	4.0	745	chr3L	9219221	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219966	intergenic	not near genes	chr3L_38_9215001	chr3L_9215001	D17-c3
1694	chr3L	9270590	9270646	chr3L	9278370	9278426	roo	15	7777	6.5	8.5	7.5	1.8	7836	chr3L	9270590	intron	GluRIB +	chr3L	9274508	intron	GluRIB +	chr3L	9278426	exon	GluRIB +	chr3L_15_9270001	chr3L_9270001	D17-c3
1703	chr3L	9443491	9443509	chr3L	9445307	9445325	S-element	4	1816	4.5	0.0	2.2	1.2	1834	chr3L	9443491	intron	CG33926 +	chr3L	9444408	intron	CG33926 +	chr3L	9445325	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	D17-c3
1706	chr3L	9501683	9501712	chr3L	9502194	9502223	roo	12	511	7.0	7.0	7.0	1.5	540	chr3L	9501683	intron	path -	chr3L	9501953	intron	path -	chr3L	9502223	intron	path -	chr3L_12_9500001	chr3L_9500001	D17-c3
1707	chr3L	9501714	9501729	chr3L	9502184	9502240	roo	6	504	5.0	5.5	5.2	1.0	526	chr3L	9501714	intron	path -	chr3L	9501977	intron	path -	chr3L	9502240	intron	path -	chr3L_6_9500001	chr3L_9500001	D17-c3
1709	chr3L	9533734	9533785	chr3L	9541319	9541370	412	19	7584	10.0	22.0	16.0	1.1	7636	chr3L	9533734	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541370	intergenic	not near genes	chr3L_19_9535001	chr3L_9535001	D17-c3
1711	chr3L	9571884	9571925	chr3L	9572257	9572298	jockey	17	373	7.5	2.0	4.8	2.9	414	chr3L	9571884	intron	CG42673 +	chr3L	9572091	intron	CG42673 +	chr3L	9572298	intron	CG42673 +	chr3L_17_9570001	chr3L_9570001	D17-c3
1713	chr3L	9575887	9575939	chr3L	9580992	9581034	jockey	29	5103	8.0	6.5	7.2	3.5	5147	chr3L	9575887	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581034	intron	CG42673 +	chr3L_29_9575001	chr3L_9575001	D17-c3
1722	chr3L	9929647	9929700	chr3L	9938454	9938506	roo	15	8806	2.5	5.5	4.0	3.0	8859	chr3L	9929647	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938506	intron	CG34356 +	chr3L_15_9930001	chr3L_9930001	D17-c3
1739	chr3L	10414923	10414971	chr3L	10417320	10417368	Doc	22	2397	4.0	5.5	4.8	3.8	2445	chr3L	10414923	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417368	intergenic	not near genes	chr3L_22_10415001	chr3L_10415001	D17-c3
1757	chr3L	11264441	11264490	chr3L	11271418	11271467	17.6	15	6975	8.0	5.5	6.8	1.9	7026	chr3L	11264441	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271467	intergenic	not near genes	chr3L_15_11265001	chr3L_11265001	D17-c3
1760	chr3L	11329667	11329724	chr3L	11332897	11332954	jockey	13	3228	10.5	14.0	12.2	1.0	3287	chr3L	11329667	intergenic	not near genes	chr3L	11331310	intergenic	not near genes	chr3L	11332954	intergenic	not near genes	chr3L_13_11330001	chr3L_11330001	D17-c3
1772	chr3L	11564788	11564803	chr3L	11572406	11572420	412	10	7639	28.0	30.5	29.2	0.3	7632	chr3L	11564788	exon	CG33267 +	chr3L	11568604	intron	CG33267 +	chr3L	11572420	exon	CG33267 +	chr3L_10_11565001	chr3L_11565001	D17-c3
1778	chr3L	11723062	11723115	chr3L	11727882	11727935	Doc	28	4820	7.0	5.5	6.2	3.9	4873	chr3L	11723062	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727935	3` UTR	Bmcp +	chr3L_28_11725001	chr3L_11725001	D17-c3
1826	chr3L	12874900	12874954	chr3L	12877217	12877271	jockey	22	2317	8.0	4.0	6.0	3.1	2371	chr3L	12874900	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877271	intergenic	not near genes	chr3L_22_12875001	chr3L_12875001	D17-c3
1828	chr3L	12919260	12919296	chr3L	12924750	12924762	Rt1c	17	5494	17.0	13.0	15.0	1.1	5502	chr3L	12919260	intergenic	not near genes	chr3L	12922011	intergenic	not near genes	chr3L	12924762	intergenic	not near genes	chr3L_17_12920001	chr3L_12920001	D17-c3
1830	chr3L	12957771	12957814	chr3L	12962278	12962321	copia	29	4506	7.0	10.5	8.8	3.0	4550	chr3L	12957771	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962321	intergenic	not near genes	chr3L_29_12960001	chr3L_12960001	D17-c3
1850	chr3L	13525133	13525187	chr3L	13532954	13533008	roo	38	7821	9.0	15.0	12.0	2.9	7875	chr3L	13525133	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13533008	intergenic	not near genes	chr3L_38_13525001	chr3L_13525001	D17-c3
1853	chr3L	13574605	13574619	chr3L	13580141	13580155	Rt1c	13	5536	27.0	19.5	23.2	0.5	5550	chr3L	13574605	intron	bru-3 -	chr3L	13577380	intron	bru-3 -	chr3L	13580155	intron	bru-3 -	chr3L_13_13575001	chr3L_13575001	D17-c3
1857	chr3L	13804524	13804570	chr3L	13822835	13822881	roo	29	18311	10.0	12.0	11.0	2.4	18357	chr3L	13804524	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822881	intergenic	not near genes	chr3L_29_13810001	chr3L_13810001	D17-c3
1871	chr3L	14245545	14245594	chr3L	14245664	14245713	1360	30	119	16.5	6.0	11.2	2.5	168	chr3L	14245545	3` UTR	CR44561 -	chr3L	14245629	3` UTR	CR44561 -	chr3L	14245713	intergenic	CR44561 -,CR44560 +	chr3L_30_14245001	chr3L_14245001	D17-c3
1872	chr3L	14267387	14267405	chr3L	14271824	14271842	F-element	11	4436	3.0	0.5	1.8	3.9	4455	chr3L	14267387	intergenic	not near genes	chr3L	14269614	intergenic	not near genes	chr3L	14271842	intergenic	not near genes	chr3L_11_14265001	chr3L_14265001	D17-c3
1874	chr3L	14295961	14296014	chr3L	14296472	14296519	roo	44	510	19.5	17.0	18.2	2.3	558	chr3L	14295961	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296519	intron	fz +	chr3L_44_14295001	chr3L_14295001	D17-c3
1875	chr3L	14312009	14312055	chr3L	14316835	14316894	X-element	40	4826	10.5	10.0	10.2	3.6	4885	chr3L	14312009	exon	fz +	chr3L	14314452	intron	fz +	chr3L	14316894	intron	fz +	chr3L_40_14310001	chr3L_14310001	D17-c3
1884	chr3L	14468436	14468475	chr3L	14473656	14473706	copia	22	5230	6.0	11.0	8.5	2.3	5270	chr3L	14468436	intron	bbg -	chr3L	14471071	intron	bbg -	chr3L	14473706	intron	bbg -	chr3L_22_14470001	chr3L_14470001	D17-c3
1896	chr3L	14721168	14721208	chr3L	14723031	14723076	Rt1c	27	1867	14.0	10.0	12.0	2.1	1908	chr3L	14721168	intron	ome +	chr3L	14722122	intron	ome +	chr3L	14723076	intron	ome +	chr3L_27_14720001	chr3L_14720001	D17-c3
1898	chr3L	14725546	14725623	chr3L	14728584	14728642	Doc	16	3021	0.5	10.0	5.2	2.6	3096	chr3L	14725546	intron	ome +	chr3L	14727094	intron	ome +	chr3L	14728642	intron	ome +	chr3L_16_14725001	chr3L_14725001	D17-c3
1904	chr3L	14825136	14825159	chr3L	14832888	14832911	Stalker2	4	7752	1.0	12.5	6.8	0.5	7775	chr3L	14825136	intron	CG17839 +	chr3L	14829024	intron	CG17839 +	chr3L	14832911	intron	CG17839 +	chr3L_4_14825001	chr3L_14825001	D17-c3
1914	chr3L	14954360	14954397	chr3L	14956054	14956091	transib2	8	1694	14.0	22.5	18.2	0.4	1731	chr3L	14954360	intergenic	not near genes	chr3L	14955226	intergenic	not near genes	chr3L	14956091	intergenic	not near genes	chr3L_8_14955001	chr3L_14955001	D17-c3
1916	chr3L	14970737	14970765	chr3L	14971072	14971100	F-element	9	335	6.5	2.5	4.5	1.6	363	chr3L	14970737	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971100	intergenic	not near genes	chr3L_9_14970001	chr3L_14970001	D17-c3
1918	chr3L	15085031	15085076	chr3L	15086222	15086267	1360	16	1187	4.5	8.5	6.5	2.1	1236	chr3L	15085031	intron	cp309 -	chr3L	15085649	intron	cp309 -	chr3L	15086267	intron	cp309 -	chr3L_16_15085001	chr3L_15085001	D17-c3
1926	chr3L	15295746	15295800	chr3L	15298614	15298668	gypsy5	18	2868	6.0	5.0	5.5	2.8	2922	chr3L	15295746	intergenic	not near genes	chr3L	15297207	intergenic	not near genes	chr3L	15298668	intergenic	Best4 +	chr3L_18_15295001	chr3L_15295001	D17-c3
1930	chr3L	15423738	15423784	chr3L	15426607	15426653	opus	22	2869	7.0	4.5	5.8	3.2	2915	chr3L	15423738	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426653	intergenic	not near genes	chr3L_22_15425001	chr3L_15425001	D17-c3
1939	chr3L	15554899	15554946	chr3L	15556711	15556758	S-element	22	1812	4.0	11.0	7.5	2.6	1859	chr3L	15554899	intron	AGO2 +	chr3L	15555828	intron	AGO2 +	chr3L	15556758	intron	AGO2 +	chr3L_22_15555001	chr3L_15555001	D17-c3
1956	chr3L	15899202	15899222	chr3L	15899794	15899812	jockey	9	590	15.0	5.0	10.0	0.8	610	chr3L	15899202	intergenic	pHCl -	chr3L	15899507	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	D17-c3
1957	chr3L	15899225	15899258	chr3L	15899793	15899845	jockey	27	587	8.0	4.5	6.2	3.8	620	chr3L	15899225	intergenic	pHCl -	chr3L	15899535	intergenic	not near genes	chr3L	15899845	intergenic	sff -	chr3L_27_15895001	chr3L_15895001	D17-c3
1970	chr3L	16184088	16184133	chr3L	16188932	16188977	X-element	20	4844	5.0	13.5	9.2	2.0	4889	chr3L	16184088	intergenic	not near genes	chr3L	16186532	intergenic	not near genes	chr3L	16188977	intergenic	not near genes	chr3L_20_16185001	chr3L_16185001	D17-c3
1978	chr3L	16443823	16443878	chr3L	16446188	16446243	Doc	22	2364	5.5	6.5	6.0	3.1	2420	chr3L	16443823	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446243	intron,intron	CG33158 +,dsx-c73A -	chr3L_22_16445001	chr3L_16445001	D17-c3
1982	chr3L	16493952	16494005	chr3L	16494494	16494547	jockey	38	540	11.0	8.0	9.5	3.6	595	chr3L	16493952	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494547	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_38_16490001	chr3L_16490001	D17-c3
1988	chr3L	16616487	16616539	chr3L	16621840	16621892	297	15	5351	4.5	6.0	5.2	2.4	5405	chr3L	16616487	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621892	3` UTR	Abl -	chr3L_15_16615001	chr3L_16615001	D17-c3
1993	chr3L	16683995	16684038	chr3L	16689241	16689284	copia	9	5246	2.0	3.0	2.5	2.6	5289	chr3L	16683995	intron,intron	Lasp -,CG43954 -	chr3L	16686640	intron,intron	Lasp -,CG43954 -	chr3L	16689284	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_9_16685001	chr3L_16685001	D17-c3
2006	chr3L	16945705	16945761	chr3L	16954883	16954901	roo	27	9170	6.5	9.5	8.0	3.0	9196	chr3L	16945705	exon	Obp73a +	chr3L	16950303	intergenic	not near genes	chr3L	16954901	5` UTR	Nc73EF +	chr3L_27_16950001	chr3L_16950001	D17-c3
2007	chr3L	17034912	17034927	chr3L	17035125	17035140	G2	4	211	4.5	2.5	3.5	0.9	228	chr3L	17034912	intergenic	not near genes	chr3L	17035026	intergenic	not near genes	chr3L	17035140	intergenic	not near genes	chr3L_4_17035001	chr3L_17035001	D17-c3
2009	chr3L	17084983	17085034	chr3L	17094157	17094208	roo	22	9174	11.5	10.0	10.8	1.9	9225	chr3L	17084983	intron	Rbp6 -	chr3L	17089596	intron	Rbp6 -	chr3L	17094208	intron	Rbp6 -	chr3L_22_17085001	chr3L_17085001	D17-c3
2022	chr3L	17516960	17517006	chr3L	17524542	17524589	412	22	7583	5.5	10.0	7.8	2.5	7629	chr3L	17516960	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524589	3` UTR	CG7564 +	chr3L_22_17520001	chr3L_17520001	D17-c3
2029	chr3L	17730828	17730868	chr3L	17738183	17738223	mdg1	13	7354	7.5	5.5	6.5	1.7	7395	chr3L	17730828	intron	Ccn +	chr3L	17734526	intron	Ccn +	chr3L	17738223	intron	Ccn +	chr3L_13_17730001	chr3L_17730001	D17-c3
2034	chr3L	17918349	17918399	chr3L	17921177	17921227	opus	11	2827	4.0	5.5	4.8	1.9	2878	chr3L	17918349	intergenic	not near genes	chr3L	17919788	intergenic	not near genes	chr3L	17921227	intergenic	not near genes	chr3L_11_17915001	chr3L_17915001	D17-c3
2038	chr3L	18047684	18047733	chr3L	18056765	18056815	roo	8	9082	2.5	5.5	4.0	1.6	9131	chr3L	18047684	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056815	intron	Eip75B -	chr3L_8_18050001	chr3L_18050001	D17-c3
2066	chr3L	18506113	18506160	chr3L	18509601	18509638	F-element	13	3487	1.5	2.5	2.0	4.3	3525	chr3L	18506113	intergenic	not near genes	chr3L	18507876	intergenic	not near genes	chr3L	18509638	intergenic	not near genes	chr3L_13_18505001	chr3L_18505001	D17-c3
2067	chr3L	18528605	18528657	chr3L	18537791	18537843	roo	12	9185	5.5	7.0	6.2	1.7	9238	chr3L	18528605	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537843	intergenic	not near genes	chr3L_12_18530001	chr3L_18530001	D17-c3
2069	chr3L	18593922	18593981	chr3L	18595927	18595989	Doc	17	2005	4.0	3.0	3.5	3.8	2067	chr3L	18593922	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18595989	intergenic	CR45389 +	chr3L_17_18590001	chr3L_18590001	D17-c3
2075	chr3L	18710770	18710785	chr3L	18718745	18718760	Stalker2	4	7975	6.5	5.5	6.0	0.6	7990	chr3L	18710770	intergenic	not near genes	chr3L	18714765	intergenic	not near genes	chr3L	18718760	intergenic	not near genes	chr3L_4_18710001	chr3L_18710001	D17-c3
2079	chr3L	18772385	18772436	chr3L	18781091	18781142	roo	20	8706	8.0	8.0	8.0	2.2	8757	chr3L	18772385	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781142	intron	ftz-f1 -	chr3L_20_18775001	chr3L_18775001	D17-c3
2095	chr3L	19008826	19008871	chr3L	19009189	19009234	jockey	19	363	7.0	8.5	7.8	2.2	408	chr3L	19008826	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009234	intron	nkd -	chr3L_19_19005001	chr3L_19005001	D17-c3
2101	chr3L	19117018	19117076	chr3L	19124490	19124548	mdg1	23	7472	8.0	5.5	6.8	2.9	7530	chr3L	19117018	intron	CG14082 -	chr3L	19120783	intron	CG14082 -	chr3L	19124548	intron	CG14082 -	chr3L_23_19120001	chr3L_19120001	D17-c3
2107	chr3L	19208035	19208084	chr3L	19209434	19209483	Doc	12	1398	7.0	4.5	5.8	1.8	1448	chr3L	19208035	intron	fz2 -	chr3L	19208759	intron	fz2 -	chr3L	19209483	intron	fz2 -	chr3L_12_19205001	chr3L_19205001	D17-c3
2126	chr3L	19820277	19820310	chr3L	19827851	19827879	412	17	7574	8.0	3.5	5.8	2.5	7602	chr3L	19820277	intron	Deaf1 +	chr3L	19824078	intron	Deaf1 +	chr3L	19827879	intron	Deaf1 +	chr3L_17_19820001	chr3L_19820001	D17-c3
2127	chr3L	19848487	19848530	chr3L	19857702	19857745	roo	11	9215	6.5	5.5	6.0	1.6	9258	chr3L	19848487	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857745	intron	Papss +	chr3L_11_19850001	chr3L_19850001	D17-c3
2128	chr3L	19861795	19861853	chr3L	19863608	19863666	S-element	23	1813	5.5	2.0	3.8	4.8	1871	chr3L	19861795	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863666	intergenic	not near genes	chr3L_23_19860001	chr3L_19860001	D17-c3
2135	chr3L	20113638	20113682	chr3L	20122920	20122964	roo	12	9280	6.5	4.0	5.2	1.9	9326	chr3L	20113638	intergenic	not near genes	chr3L	20118301	intergenic	not near genes	chr3L	20122964	intergenic	not near genes	chr3L_12_20115001	chr3L_20115001	D17-c3
2140	chr3L	20257309	20257360	chr3L	20258454	20258505	pogo	27	1145	7.5	6.0	6.8	3.5	1196	chr3L	20257309	intron	rdgC +	chr3L	20257907	intron	rdgC +	chr3L	20258505	intron	rdgC +	chr3L_27_20255001	chr3L_20255001	D17-c3
2142	chr3L	20321116	20321126	chr3L	20342902	20342907	17.6	4	21782	19.0	24.5	21.8	0.2	21791	chr3L	20321116	exon	Spn77Bb +	chr3L	20332012	intergenic	not near genes	chr3L	20342907	exon	Spn77Bc +	chr3L_4_20330001	chr3L_20330001	D17-c3
2145	chr3L	20476733	20476777	chr3L	20484357	20484401	springer	17	7623	7.0	9.0	8.0	1.9	7668	chr3L	20476733	3` UTR	isoQC +	chr3L	20480567	intergenic	not near genes	chr3L	20484401	3` UTR	ZnT77C -	chr3L_17_20480001	chr3L_20480001	D17-c3
2146	chr3L	20487641	20487669	chr3L	20488117	20488145	INE-1	19	476	15.5	6.5	11.0	1.6	504	chr3L	20487641	intron	ZnT77C -	chr3L	20487893	intron	ZnT77C -	chr3L	20488145	exon	ZnT77C -	chr3L_19_20485001	chr3L_20485001	D17-c3
2151	chr3L	20590050	20590090	chr3L	20590614	20590654	412	15	563	7.5	4.0	5.8	2.2	604	chr3L	20590050	intergenic	not near genes	chr3L	20590352	intergenic	not near genes	chr3L	20590654	intergenic	not near genes	chr3L_15_20590001	chr3L_20590001	D17-c3
2152	chr3L	20590093	20590096	chr3L	20590612	20590660	412	4	551	5.5	4.0	4.8	0.7	567	chr3L	20590093	intergenic	not near genes	chr3L	20590376	intergenic	not near genes	chr3L	20590660	intergenic	not near genes	chr3L_4_20590001	chr3L_20590001	D17-c3
2153	chr3L	20821282	20821302	chr3L	20824776	20824796	NOF	5	3494	6.0	13.0	9.5	0.5	3514	chr3L	20821282	intron	Pka-R1 +	chr3L	20823039	intron	Pka-R1 +	chr3L	20824796	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	D17-c3
2159	chr3L	21014901	21014947	chr3L	21023396	21023453	Tirant	43	8502	8.0	10.5	9.2	4.2	8552	chr3L	21014901	intron	skd -	chr3L	21019177	intron	skd -	chr3L	21023453	intron	skd -	chr3L_43_21015001	chr3L_21015001	D17-c3
2162	chr3L	21151841	21151897	chr3L	21156950	21157005	flea	22	5109	7.5	8.0	7.8	2.5	5164	chr3L	21151841	intron	Ac78C -	chr3L	21154423	intron	Ac78C -	chr3L	21157005	intron	Ac78C -	chr3L_22_21150001	chr3L_21150001	D17-c3
2164	chr3L	21243730	21243736	chr3L	21251312	21251314	412	4	7583	14.5	11.5	13.0	0.3	7584	chr3L	21243730	intron	Eip78C +	chr3L	21247522	intron	Eip78C +	chr3L	21251314	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	D17-c3
2165	chr3L	21243737	21243742	chr3L	21251310	21251330	412	5	7579	14.5	11.5	13.0	0.4	7593	chr3L	21243737	intron	Eip78C +	chr3L	21247534	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	D17-c3
2166	chr3L	21243743	21243751	chr3L	21251309	21251329	412	6	7578	14.0	11.5	12.8	0.4	7586	chr3L	21243743	intron	Eip78C +	chr3L	21247536	intron	Eip78C +	chr3L	21251329	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	D17-c3
2168	chr3L	21306123	21306176	chr3L	21315307	21315360	roo	16	9183	5.0	2.0	3.5	3.6	9237	chr3L	21306123	3` UTR	CG7632 +	chr3L	21310742	intron	Pc -	chr3L	21315360	3` UTR	Pc -	chr3L_16_21310001	chr3L_21310001	D17-c3
2175	chr3L	21498826	21498842	chr3L	21500487	21500503	1360	6	1660	17.5	12.0	14.8	0.4	1677	chr3L	21498826	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499664	intron	Glg1 -	chr3L	21500503	intron	Glg1 -	chr3L_6_21495001	chr3L_21495001	D17-c3
2176	chr3L	21498843	21498864	chr3L	21500484	21500520	1360	11	1659	10.0	11.5	10.8	0.9	1677	chr3L	21498843	intron	Glg1 -	chr3L	21499682	intron	Glg1 -	chr3L	21500520	intron	Glg1 -	chr3L_11_21495001	chr3L_21495001	D17-c3
2178	chr3L	21749292	21749337	chr3L	21754477	21754522	Doc	18	5179	18.5	7.0	12.8	1.3	5230	chr3L	21749292	intron	Syn1 -	chr3L	21751907	intron	Syn1 -	chr3L	21754522	intron	Syn1 -	chr3L_18_21750001	chr3L_21750001	D17-c3
2187	chr3L	22099653	22099665	chr3L	22105864	22105876	3S18	9	6211	15.0	4.5	9.8	0.8	6223	chr3L	22099653	intergenic	not near genes	chr3L	22102764	intergenic	not near genes	chr3L	22105876	intergenic	not near genes	chr3L_9_22100001	chr3L_22100001	D17-c3
2188	chr3L	22099670	22099703	chr3L	22105863	22105914	3S18	21	6207	7.5	4.5	6.0	3.0	6244	chr3L	22099670	intergenic	not near genes	chr3L	22102792	intergenic	not near genes	chr3L	22105914	intergenic	not near genes	chr3L_21_22100001	chr3L_22100001	D17-c3
2197	chr3L	22555743	22555794	chr3L	22563238	22563289	blood	28	7492	8.0	9.5	8.8	2.9	7546	chr3L	22555743	intergenic	not near genes	chr3L	22559516	intergenic	not near genes	chr3L	22563289	intergenic	not near genes	chr3L_28_22555001	chr3L_22555001	D17-c3
2199	chr3L	22577598	22577636	chr3L	22582411	22582449	Doc	26	4810	11.5	7.0	9.2	2.5	4851	chr3L	22577598	intergenic	not near genes	chr3L	22580024	intergenic	not near genes	chr3L	22582449	3` UTR	CG14459 -	chr3L_26_22580001	chr3L_22580001	D17-c3
2200	chr3L	22617169	22617221	chr3L	22624645	22624698	blood	19	7476	7.0	11.0	9.0	1.9	7529	chr3L	22617169	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624698	intron	CG14459 -	chr3L_19_22620001	chr3L_22620001	D17-c3
2203	chr3L	22761364	22761415	chr3L	22766823	22766874	Ivk	22	5459	8.0	4.5	6.2	3.1	5510	chr3L	22761364	intron	SPoCk +	chr3L	22764119	intron	SPoCk +	chr3L	22766874	intron	SPoCk +	chr3L_22_22760001	chr3L_22760001	D17-c3
2208	chr3L	22865965	22866007	chr3L	22867121	22867165	Doc	10	1158	6.0	3.0	4.5	1.8	1200	chr3L	22865965	intron	CG33170 +	chr3L	22866565	intron	CG33170 +	chr3L	22867165	intron	CG33170 +	chr3L_10_22865001	chr3L_22865001	D17-c3
2211	chr3L	22989838	22989893	chr3L	22996837	22996892	297	29	6999	7.5	4.5	6.0	4.1	7054	chr3L	22989838	intergenic	not near genes	chr3L	22993365	intergenic	not near genes	chr3L	22996892	intergenic	not near genes	chr3L_29_22990001	chr3L_22990001	D17-c3
2212	chr3L	23042207	23042255	chr3L	23048985	23049033	gypsy6	28	6778	10.5	12.5	11.5	2.2	6826	chr3L	23042207	intergenic	not near genes	chr3L	23045620	intergenic	not near genes	chr3L	23049033	intergenic	not near genes	chr3L_28_23045001	chr3L_23045001	D17-c3
2214	chr3L	23062869	23062875	chr3L	25074004	25074010	Tirant	7	2011135	14.0	26.0	20.0	0.3	2011141	chr3L	23062869	intergenic	not near genes	chr3L	24068440	intergenic	not near genes	chr3L	25074010	intergenic	not near genes	chr3L_7_24065001	chr3L_24065001	D17-c3
2219	chr3L	23611207	23611210	chr3L	27363496	27363499	Gypsy12A_LTR	4	3752289	35.5	38.0	36.8	0.1	3752292	chr3L	23611207	intron	AGO3 +	chr3L	25487353	intron	CG41343 -	chr3L	27363499	intron	Dbp80 +	chr3L_4_25485001	chr3L_25485001	D17-c3
2221	chr3L	24012388	24012433	chr3L	24020754	24020799	roo	7	8366	2.5	3.5	3.0	1.8	8411	chr3L	24012388	intergenic	not near genes	chr3L	24016594	intergenic	not near genes	chr3L	24020799	intergenic	not near genes	chr3L_7_24015001	chr3L_24015001	D17-c3
2222	chr3L	24168761	24168821	chr3L	24176114	24176174	ZAM	55	7351	8.0	9.5	8.8	5.6	7413	chr3L	24168761	intron	Snap25 +	chr3L	24172468	intron	Snap25 +	chr3L	24176174	intron	Snap25 +	chr3L_55_24170001	chr3L_24170001	D17-c3
2223	chr3L	24791877	24791912	chr3L	24796681	24796716	Doc	7	4804	5.5	5.5	5.5	1.1	4839	chr3L	24791877	intergenic	not near genes	chr3L	24794296	intergenic	not near genes	chr3L	24796716	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	D17-c3
2224	chr3L	24811049	24811051	chr3L	24821492	24821494	mdg1	4	10443	26.5	25.0	25.8	0.1	10445	chr3L	24811049	intergenic	not near genes	chr3L	24816272	intergenic	not near genes	chr3L	24821494	intergenic	not near genes	chr3L_4_24815001	chr3L_24815001	D17-c3
2230	chr3L	23311678	23311683	chr3L	26026738	26026743	G6	6	2715060	48.0	59.0	53.5	0.1	2715065	chr3L	23311678	intergenic	not near genes	chr3L	24669210	intergenic	not near genes	chr3L	26026743	intergenic	not near genes	chr3L_6_24665001	chr3L_24665001	D17-c3
2232	chr3L	23941245	23941246	chr3L	26882299	26882300	1360	4	2941054	18.5	1.0	9.8	0.4	2941055	chr3L	23941245	intron	CG40470 -	chr3L	25411772	intergenic	not near genes	chr3L	26882300	intergenic	not near genes	chr3L_4_25410001	chr3L_25410001	D17-c3
2238	chr3R	1511854	1511859	chr3R	2516748	2516753	297	4	1004894	22.0	52.5	37.2	0.1	1004899	chr3R	1511854	intergenic	not near genes	chr3R	2014304	intergenic	not near genes	chr3R	2516753	intergenic	not near genes	chr3R_4_2010001	chr3R_2010001	D17-c3
2243	chr3R	3989295	3989307	chr3R	4068939	4068951	mdg1	9	79644	34.5	13.0	23.8	0.4	79656	chr3R	3989295	intergenic	not near genes	chr3R	4029123	intergenic	not near genes	chr3R	4068951	intergenic	not near genes	chr3R_9_4025001	chr3R_4025001	D17-c3
2244	chr3R	4105019	4105059	chr3R	4110246	4110288	copia	5	5227	8.5	7.5	8.0	0.6	5269	chr3R	4105019	intergenic	not near genes	chr3R	4107654	intergenic	not near genes	chr3R	4110288	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	D17-c3
2245	chr3R	4206046	4206092	chr3R	4211646	4211692	mdg3	7	5600	9.5	3.5	6.5	0.9	5646	chr3R	4206046	intron	CG14636 -	chr3R	4208869	intron	CG14636 -	chr3R	4211692	intron	CG14636 -	chr3R_7_4205001	chr3R_4205001	D17-c3
2246	chr3R	4366736	4366787	chr3R	4375144	4375195	roo	16	8408	6.0	4.5	5.2	2.6	8459	chr3R	4366736	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375195	5` UTR	CR44922 +	chr3R_16_4370001	chr3R_4370001	D17-c3
2247	chr3R	4408388	4408435	chr3R	4412717	4412764	Juan	18	4329	5.5	6.5	6.0	2.6	4376	chr3R	4408388	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412764	intron	CG32944 -	chr3R_18_4410001	chr3R_4410001	D17-c3
2252	chr3R	4683154	4683210	chr3R	4684938	4684994	S-element	29	1784	4.5	8.5	6.5	3.9	1840	chr3R	4683154	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684994	intron	CG43427 +	chr3R_29_4680001	chr3R_4680001	D17-c3
2255	chr3R	4753223	4753238	chr3R	4757551	4757566	F-element	7	4328	21.0	19.0	20.0	0.3	4343	chr3R	4753223	intron,intron	atms +,CG44098 -	chr3R	4755394	intron,intron	atms +,CG44098 -	chr3R	4757566	intron,exon	atms +,CG44098 -	chr3R_7_4755001	chr3R_4755001	D17-c3
2256	chr3R	4753241	4753262	chr3R	4757547	4757590	F-element	22	4325	13.5	18.0	15.8	1.3	4349	chr3R	4753241	intron,intron	atms +,CG44098 -	chr3R	4755416	intron,intron	atms +,CG44098 -	chr3R	4757590	intron,exon	atms +,CG44098 -	chr3R_22_4755001	chr3R_4755001	D17-c3
2260	chr3R	4887453	4887504	chr3R	4894855	4894906	rover	24	7400	7.5	7.0	7.2	2.9	7453	chr3R	4887453	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894906	intergenic	not near genes	chr3R_24_4890001	chr3R_4890001	D17-c3
2266	chr3R	5045823	5045874	chr3R	5052945	5053001	HMS-Beagle	19	7126	7.0	5.0	6.0	2.7	7178	chr3R	5045823	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053001	intergenic	CR45588 -	chr3R_19_5045001	chr3R_5045001	D17-c3
2268	chr3R	5067962	5068014	chr3R	5073499	5073556	mdg3	32	5542	7.0	7.0	7.0	4.0	5594	chr3R	5067962	intergenic	not near genes	chr3R	5070759	intergenic	not near genes	chr3R	5073556	intergenic	not near genes	chr3R_32_5070001	chr3R_5070001	D17-c3
2276	chr3R	5338377	5338422	chr3R	5343579	5343624	Rt1c	31	5202	12.5	20.5	16.5	1.8	5247	chr3R	5338377	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343624	intron	mtd -	chr3R_31_5340001	chr3R_5340001	D17-c3
2280	chr3R	5445936	5445988	chr3R	5452421	5452473	Burdock	18	6485	7.5	4.0	5.8	2.6	6537	chr3R	5445936	intron	CG14669 +	chr3R	5449204	intron	CG14669 +	chr3R	5452473	intron	CG14669 +	chr3R_18_5445001	chr3R_5445001	D17-c3
2286	chr3R	5745999	5746046	chr3R	5746265	5746312	pogo	24	266	3.5	11.0	7.2	2.9	313	chr3R	5745999	3` UTR	Madm +	chr3R	5746156	3` UTR	Madm +	chr3R	5746312	3` UTR	Madm +	chr3R_24_5745001	chr3R_5745001	D17-c3
2287	chr3R	5746990	5747035	chr3R	5753206	5753251	diver	10	6216	4.0	4.0	4.0	2.0	6261	chr3R	5746990	intergenic	Madm +	chr3R	5750120	intergenic	not near genes	chr3R	5753251	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	D17-c3
2291	chr3R	5809087	5809140	chr3R	5809353	5809406	pogo	22	266	5.0	6.0	5.5	3.4	319	chr3R	5809087	3` UTR	CG11000 +	chr3R	5809246	3` UTR	CG11000 +	chr3R	5809406	3` UTR	CG11000 +	chr3R_22_5805001	chr3R_5805001	D17-c3
2292	chr3R	5822358	5822405	chr3R	5823550	5823597	1360	20	1192	8.5	12.5	10.5	1.7	1239	chr3R	5822358	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823597	3` UTR	CG2023 -	chr3R_20_5820001	chr3R_5820001	D17-c3
2294	chr3R	5927559	5927590	chr3R	5927799	5927845	pogo	19	252	12.0	7.0	9.5	1.8	286	chr3R	5927559	intron	CG34113 -	chr3R	5927702	intron	CG34113 -	chr3R	5927845	intron	CG34113 -	chr3R_19_5925001	chr3R_5925001	D17-c3
2300	chr3R	6015948	6015995	chr3R	6024447	6024521	Tirant	27	8523	5.5	3.5	4.5	4.9	8573	chr3R	6015948	intergenic	not near genes	chr3R	6020234	intergenic	not near genes	chr3R	6024521	intergenic	not near genes	chr3R_27_6020001	chr3R_6020001	D17-c3
2305	chr3R	6121164	6121178	chr3R	6121407	6121421	BS	5	243	0.0	6.0	3.0	1.2	257	chr3R	6121164	intergenic	not near genes	chr3R	6121292	intergenic	not near genes	chr3R	6121421	intergenic	not near genes	chr3R_5_6120001	chr3R_6120001	D17-c3
2307	chr3R	6158489	6158540	chr3R	6167097	6167148	Tirant	14	8608	6.5	5.5	6.0	2.0	8659	chr3R	6158489	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167148	intergenic	CG1077 +	chr3R_14_6160001	chr3R_6160001	D17-c3
2308	chr3R	6175152	6175200	chr3R	6182449	6182497	HMS-Beagle2	23	7292	4.5	5.0	4.8	4.0	7345	chr3R	6175152	intergenic	Osi1 +	chr3R	6178824	intron	CR45194 +	chr3R	6182497	intergenic	CR45194 +	chr3R_23_6175001	chr3R_6175001	D17-c3
2309	chr3R	6206265	6206284	chr3R	6206507	6206526	BS	14	242	21.0	12.0	16.5	0.8	261	chr3R	6206265	exon	Osi24 +	chr3R	6206396	intron	Osi24 +	chr3R	6206526	intron	Osi24 +	chr3R_14_6205001	chr3R_6205001	D17-c3
2310	chr3R	6206286	6206316	chr3R	6206498	6206553	BS	17	240	8.5	9.0	8.8	1.7	267	chr3R	6206286	exon	Osi24 +	chr3R	6206420	intron	Osi24 +	chr3R	6206553	intron	Osi24 +	chr3R_17_6205001	chr3R_6205001	D17-c3
2316	chr3R	6510001	6510051	chr3R	6515107	6515157	jockey	16	5105	7.0	3.5	5.2	2.6	5156	chr3R	6510001	intergenic	not near genes	chr3R	6512579	intergenic	not near genes	chr3R	6515157	intergenic	not near genes	chr3R_16_6510001	chr3R_6510001	D17-c3
2325	chr3R	6737477	6737529	chr3R	6739289	6739310	Doc	21	1806	5.0	11.5	8.2	2.3	1833	chr3R	6737477	intron	pb -	chr3R	6738394	intron	pb -	chr3R	6739310	intron	pb -	chr3R_21_6735001	chr3R_6735001	D17-c3
2351	chr3R	7729445	7729494	chr3R	7737408	7737457	Stalker2	18	7963	7.5	8.0	7.8	2.0	8012	chr3R	7729445	intergenic	not near genes	chr3R	7733451	intergenic	not near genes	chr3R	7737457	intergenic	not near genes	chr3R_18_7730001	chr3R_7730001	D17-c3
2352	chr3R	7973295	7973341	chr3R	7974382	7974428	1360	15	1087	5.5	10.5	8.0	1.7	1133	chr3R	7973295	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974428	3` UTR	CD98hc -	chr3R_15_7970001	chr3R_7970001	D17-c3
2356	chr3R	8090540	8090568	chr3R	8094042	8094070	297	16	3501	7.0	16.5	11.8	1.2	3530	chr3R	8090540	intergenic	CR44330 +	chr3R	8092305	intergenic	not near genes	chr3R	8094070	intergenic	CG7900 +	chr3R_16_8090001	chr3R_8090001	D17-c3
2357	chr3R	8094387	8094435	chr3R	8099717	8099765	Transpac	16	5330	8.5	4.0	6.2	2.2	5378	chr3R	8094387	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099765	intron	CG7900 +	chr3R_16_8095001	chr3R_8095001	D17-c3
2358	chr3R	8101740	8101788	chr3R	8104848	8104897	G2	22	3109	7.0	7.0	7.0	2.8	3157	chr3R	8101740	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104897	3` UTR	CG7900 +	chr3R_22_8100001	chr3R_8100001	D17-c3
2361	chr3R	8207529	8207576	chr3R	8208399	8208446	F-element	14	866	6.0	5.5	5.8	2.1	917	chr3R	8207529	intergenic	not near genes	chr3R	8207988	intergenic	not near genes	chr3R	8208446	intergenic	not near genes	chr3R_14_8205001	chr3R_8205001	D17-c3
2369	chr3R	8402983	8402992	chr3R	8412174	8412183	roo	6	9191	21.0	10.0	15.5	0.4	9200	chr3R	8402983	intron	CG45263 -	chr3R	8407583	intron	CG45263 -	chr3R	8412183	intron	CG45263 -	chr3R_6_8405001	chr3R_8405001	D17-c3
2370	chr3R	8402993	8403036	chr3R	8412171	8412222	roo	29	9188	11.5	8.5	10.0	2.6	9229	chr3R	8402993	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412222	intron	CG45263 -	chr3R_29_8405001	chr3R_8405001	D17-c3
2372	chr3R	8570456	8570507	chr3R	8575117	8575133	HMS-Beagle	15	4657	0.5	4.5	2.5	4.3	4677	chr3R	8570456	intergenic	not near genes	chr3R	8572794	intergenic	not near genes	chr3R	8575133	intergenic	not near genes	chr3R_15_8570001	chr3R_8570001	D17-c3
2373	chr3R	8601750	8601798	chr3R	8610928	8610970	roo	19	9178	5.5	7.0	6.2	2.6	9220	chr3R	8601750	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610970	intron	5-HT2B +	chr3R_19_8605001	chr3R_8605001	D17-c3
2376	chr3R	8707331	8707380	chr3R	8709797	8709846	jockey	20	2466	14.0	7.5	10.8	1.7	2515	chr3R	8707331	intergenic	not near genes	chr3R	8708588	intergenic	not near genes	chr3R	8709846	intergenic	not near genes	chr3R_20_8705001	chr3R_8705001	D17-c3
2377	chr3R	8898196	8898206	chr3R	8913801	8913811	297	6	15604	19.0	7.5	13.2	0.4	15615	chr3R	8898196	intron	pyd -	chr3R	8906004	intron	pyd -	chr3R	8913811	intron	pyd -	chr3R_6_8905001	chr3R_8905001	D17-c3
2389	chr3R	9278771	9278806	chr3R	9284056	9284091	Rt1a	19	5285	5.5	12.0	8.8	1.9	5320	chr3R	9278771	intergenic	not near genes	chr3R	9281431	intergenic	not near genes	chr3R	9284091	intergenic	not near genes	chr3R_19_9280001	chr3R_9280001	D17-c3
2390	chr3R	9319553	9319601	chr3R	9320013	9320061	jockey	28	460	7.5	9.0	8.2	3.0	508	chr3R	9319553	intron	CG8861 -	chr3R	9319807	intron	CG8861 -	chr3R	9320061	intron	CG8861 -	chr3R_28_9315001	chr3R_9315001	D17-c3
2391	chr3R	9361810	9361843	chr3R	9362076	9362108	pogo	12	266	5.5	7.0	6.2	1.7	298	chr3R	9361810	3` UTR	CG45050 +	chr3R	9361959	3` UTR	CG45050 +	chr3R	9362108	3` UTR	CG45050 +	chr3R_12_9360001	chr3R_9360001	D17-c3
2398	chr3R	9699957	9700002	chr3R	9700071	9700116	1360	18	113	10.5	12.5	11.5	1.4	159	chr3R	9699957	intron	Unc-115a -	chr3R	9700036	intron	Unc-115a -	chr3R	9700116	intron	Unc-115a -	chr3R_18_9700001	chr3R_9700001	D17-c3
2406	chr3R	10231761	10231813	chr3R	10237363	10237405	mdg3	17	5599	7.0	9.0	8.0	1.9	5644	chr3R	10231761	intron	CG42795 +	chr3R	10234583	intron	CG42795 +	chr3R	10237405	intron	CG42795 +	chr3R_17_10230001	chr3R_10230001	D17-c3
2407	chr3R	10255361	10255385	chr3R	10260826	10260850	I-element	7	5464	7.5	8.0	7.8	0.8	5489	chr3R	10255361	3` UTR	Sirt6 -	chr3R	10258106	intron	Sirt6 -	chr3R	10260850	exon	Sirt6 -	chr3R_7_10255001	chr3R_10255001	D17-c3
2420	chr3R	10804150	10804195	chr3R	10811707	10811752	17.6	16	7557	5.5	6.5	6.0	2.3	7602	chr3R	10804150	intergenic	CG14692 -	chr3R	10807951	intergenic	not near genes	chr3R	10811752	3` UTR	CG14693 -	chr3R_16_10805001	chr3R_10805001	D17-c3
2423	chr3R	10957863	10957885	chr3R	10963264	10963287	Rt1c	10	5401	8.5	9.5	9.0	1.0	5424	chr3R	10957863	intergenic	not near genes	chr3R	10960575	intergenic	not near genes	chr3R	10963287	intergenic	not near genes	chr3R_10_10960001	chr3R_10960001	D17-c3
2436	chr3R	11379214	11379252	chr3R	11388394	11388432	roo	13	9179	8.0	8.5	8.2	1.4	9218	chr3R	11379214	intron	pros +	chr3R	11383823	intron	pros +	chr3R	11388432	intron	pros +	chr3R_13_11380001	chr3R_11380001	D17-c3
2443	chr3R	11841039	11841089	chr3R	11846255	11846305	BS	22	5216	11.0	9.5	10.2	2.0	5266	chr3R	11841039	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846305	intron	CG6959 -	chr3R_22_11840001	chr3R_11840001	D17-c3
2446	chr3R	12022859	12022911	chr3R	12025061	12025113	pogo	25	2202	3.0	5.5	4.2	4.8	2254	chr3R	12022859	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025113	intergenic	not near genes	chr3R_25_12020001	chr3R_12020001	D17-c3
2470	chr3R	12864573	12864593	chr3R	12865083	12865103	roo	4	510	0.0	4.5	2.2	1.2	530	chr3R	12864573	intergenic	not near genes	chr3R	12864838	intergenic	not near genes	chr3R	12865103	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	D17-c3
2473	chr3R	12920134	12920154	chr3R	12925362	12925375	copia	7	5227	10.0	5.5	7.8	0.8	5241	chr3R	12920134	intron	beat-Vb +	chr3R	12922754	intron	beat-Vb +	chr3R	12925375	intron	beat-Vb +	chr3R_7_12920001	chr3R_12920001	D17-c3
2474	chr3R	12920157	12920178	chr3R	12925359	12925406	copia	14	5226	5.5	5.0	5.2	2.3	5249	chr3R	12920157	intron	beat-Vb +	chr3R	12922782	intron	beat-Vb +	chr3R	12925406	intron	beat-Vb +	chr3R_14_12920001	chr3R_12920001	D17-c3
2484	chr3R	13135802	13135858	chr3R	13138002	13138058	pogo	18	2200	7.0	3.0	5.0	3.0	2256	chr3R	13135802	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136930	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138058	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_18_13135001	chr3R_13135001	D17-c3
2485	chr3R	13143016	13143063	chr3R	13148617	13148664	mdg3	25	5595	7.0	9.0	8.0	2.8	5648	chr3R	13143016	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145840	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148664	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_25_13145001	chr3R_13145001	D17-c3
2492	chr3R	13314081	13314125	chr3R	13318895	13318938	Doc	5	4813	4.0	6.0	5.0	0.8	4857	chr3R	13314081	intergenic	not near genes	chr3R	13316510	intergenic	not near genes	chr3R	13318938	intergenic	CG45080 -	chr3R_5_13315001	chr3R_13315001	D17-c3
2516	chr3R	14021624	14021680	chr3R	14023466	14023522	S-element	25	1842	7.5	5.5	6.5	3.3	1898	chr3R	14021624	intron	rdx -	chr3R	14022573	intron	rdx -	chr3R	14023522	intron	rdx -	chr3R_25_14020001	chr3R_14020001	D17-c3
2521	chr3R	14180789	14180835	chr3R	14185579	14185625	F-element	6	4790	8.5	5.0	6.8	0.8	4836	chr3R	14180789	intron	Dop1R1 -	chr3R	14183207	intron	Dop1R1 -	chr3R	14185625	intron	Dop1R1 -	chr3R_6_14180001	chr3R_14180001	D17-c3
2522	chr3R	14194428	14194454	chr3R	14203602	14203628	roo	8	9174	5.0	7.5	6.2	1.1	9200	chr3R	14194428	intron	Dop1R1 -	chr3R	14199028	intron	Dop1R1 -	chr3R	14203628	intron	Dop1R1 -	chr3R_8_14195001	chr3R_14195001	D17-c3
2523	chr3R	14246368	14246399	chr3R	14247889	14247920	jockey	16	1517	13.5	6.5	10.0	1.5	1552	chr3R	14246368	intergenic	not near genes	chr3R	14247144	intergenic	not near genes	chr3R	14247920	intergenic	not near genes	chr3R_16_14245001	chr3R_14245001	D17-c3
2524	chr3R	14246401	14246414	chr3R	14247885	14247935	jockey	10	1507	9.0	5.5	7.2	1.2	1534	chr3R	14246401	intergenic	not near genes	chr3R	14247168	intergenic	not near genes	chr3R	14247935	intergenic	not near genes	chr3R_10_14245001	chr3R_14245001	D17-c3
2544	chr3R	15041399	15041419	chr3R	15045208	15045228	Doc	10	3809	0.0	7.0	3.5	2.2	3829	chr3R	15041399	intergenic	not near genes	chr3R	15043314	intergenic	not near genes	chr3R	15045228	intergenic	not near genes	chr3R_10_15040001	chr3R_15040001	D17-c3
2545	chr3R	15059253	15059477	chr3R	15059472	15059589	BS	16	198	0.0	0.0	0.0	16.0	336	chr3R	15059253	intron	dpr9 -	chr3R	15059421	intron	dpr9 -	chr3R	15059589	intron	dpr9 -	chr3R_16_15055001	chr3R_15055001	D17-c3
2547	chr3R	15079781	15079838	chr3R	15080047	15080104	pogo	24	264	9.5	4.5	7.0	3.0	323	chr3R	15079781	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080104	3` UTR	CG6966 -	chr3R_24_15075001	chr3R_15075001	D17-c3
2550	chr3R	15102470	15102525	chr3R	15109752	15109805	412	15	7281	4.0	9.0	6.5	2.0	7335	chr3R	15102470	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109805	intron	CG42788 -	chr3R_15_15105001	chr3R_15105001	D17-c3
2552	chr3R	15132040	15132075	chr3R	15135125	15135160	Juan	39	3085	24.5	22.5	23.5	1.6	3120	chr3R	15132040	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135160	3` UTR	CG6912 -	chr3R_39_15130001	chr3R_15130001	D17-c3
2556	chr3R	15162520	15162574	chr3R	15167313	15167366	F-element	17	4792	6.0	3.5	4.8	2.9	4846	chr3R	15162520	intron	Gyc88E +	chr3R	15164943	intron	Gyc88E +	chr3R	15167366	intron	Gyc88E +	chr3R_17_15160001	chr3R_15160001	D17-c3
2561	chr3R	15601145	15601191	chr3R	15608692	15608738	412	22	7547	7.0	8.0	7.5	2.6	7593	chr3R	15601145	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608738	intergenic	not near genes	chr3R_22_15600001	chr3R_15600001	D17-c3
2562	chr3R	15618733	15618762	chr3R	15626232	15626260	blood	11	7499	4.0	5.5	4.8	1.9	7527	chr3R	15618733	intergenic	not near genes	chr3R	15622496	intergenic	not near genes	chr3R	15626260	intergenic	not near genes	chr3R_11_15620001	chr3R_15620001	D17-c3
2566	chr3R	15735220	15735236	chr3R	15739965	15739981	F-element	5	4745	2.5	5.0	3.8	1.0	4761	chr3R	15735220	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739981	intergenic	not near genes	chr3R_5_15735001	chr3R_15735001	D17-c3
2574	chr3R	16756297	16756351	chr3R	16762513	16762567	diver	24	6216	3.5	1.5	2.5	6.9	6270	chr3R	16756297	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762567	intron	bxd -	chr3R_24_16755001	chr3R_16755001	D17-c3
2577	chr3R	17294652	17294693	chr3R	17295105	17295146	BS	23	453	4.5	7.5	6.0	3.3	494	chr3R	17294652	intergenic	not near genes	chr3R	17294899	intergenic	not near genes	chr3R	17295146	intergenic	not near genes	chr3R_23_17290001	chr3R_17290001	D17-c3
2587	chr3R	17591268	17591323	chr3R	17591729	17591761	F-element	17	458	8.0	7.0	7.5	2.0	493	chr3R	17591268	intergenic	not near genes	chr3R	17591514	intergenic	not near genes	chr3R	17591761	intergenic	not near genes	chr3R_17_17590001	chr3R_17590001	D17-c3
2598	chr3R	17925832	17925877	chr3R	17927324	17927367	hobo	15	1492	13.0	6.5	9.8	1.4	1535	chr3R	17925832	intron	cpo +	chr3R	17926600	intron	cpo +	chr3R	17927367	intron	cpo +	chr3R_15_17925001	chr3R_17925001	D17-c3
2600	chr3R	18032800	18032807	chr3R	18040498	18040505	opus	5	7698	0.0	18.0	9.0	0.5	7705	chr3R	18032800	intergenic	not near genes	chr3R	18036652	intergenic	not near genes	chr3R	18040505	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	D17-c3
2613	chr3R	18331759	18331766	chr3R	18333278	18333285	hopper2	5	1519	13.0	8.0	10.5	0.4	1526	chr3R	18331759	3` UTR	CG15803 -	chr3R	18332522	intron	CG15803 -	chr3R	18333285	3` UTR	CG15803 -	chr3R_5_18330001	chr3R_18330001	D17-c3
2619	chr3R	18606479	18606527	chr3R	18610736	18610783	F-element	15	4257	6.0	4.0	5.0	2.5	4304	chr3R	18606479	intron,intron	qin +,CG14304 -	chr3R	18608631	intron,intron	qin +,CG14304 -	chr3R	18610783	intron,intron	qin +,CG14304 -	chr3R_15_18605001	chr3R_18605001	D17-c3
2649	chr3R	20156674	20156719	chr3R	20165869	20165914	roo	11	9194	7.5	7.0	7.2	1.3	9240	chr3R	20156674	intergenic	not near genes	chr3R	20161294	intergenic	not near genes	chr3R	20165914	intergenic	not near genes	chr3R_11_20160001	chr3R_20160001	D17-c3
2650	chr3R	20330977	20331025	chr3R	20331488	20331536	roo	14	510	2.0	1.5	1.8	5.0	559	chr3R	20330977	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331536	intergenic	not near genes	chr3R_14_20330001	chr3R_20330001	D17-c3
2661	chr3R	20854447	20854517	chr3R	20859267	20859301	Doc	10	4805	1.0	4.5	2.8	2.6	4854	chr3R	20854447	intron	Ir93a -	chr3R	20856874	intron	Ir93a -	chr3R	20859301	exon	Ir93a -	chr3R_10_20855001	chr3R_20855001	D17-c3
2671	chr3R	21141651	21141706	chr3R	21150157	21150211	Tirant	17	8503	4.5	12.5	8.5	1.8	8560	chr3R	21141651	intron	SNF4Agamma +	chr3R	21145931	intron	SNF4Agamma +	chr3R	21150211	intron	SNF4Agamma +	chr3R_17_21145001	chr3R_21145001	D17-c3
2691	chr3R	21761099	21761114	chr3R	21768516	21768531	mdg1	12	7416	25.0	18.0	21.5	0.5	7432	chr3R	21761099	exon	CG42335 +	chr3R	21764815	intron	CG42335 +	chr3R	21768531	exon	CG42335 +	chr3R_12_21760001	chr3R_21760001	D17-c3
2692	chr3R	21761116	21761142	chr3R	21768514	21768534	mdg1	13	7406	12.0	16.5	14.2	0.9	7418	chr3R	21761116	exon	CG42335 +	chr3R	21764825	intron	CG42335 +	chr3R	21768534	exon	CG42335 +	chr3R_13_21760001	chr3R_21760001	D17-c3
2693	chr3R	21761143	21761155	chr3R	21768510	21768566	mdg1	10	7408	8.5	14.5	11.5	0.8	7423	chr3R	21761143	exon	CG42335 +	chr3R	21764854	intron	CG42335 +	chr3R	21768566	exon	CG42335 +	chr3R_10_21760001	chr3R_21760001	D17-c3
2716	chr3R	22234664	22234685	chr3R	22236008	22236029	pogo	8	1344	9.5	5.0	7.2	1.0	1365	chr3R	22234664	intron	SKIP +	chr3R	22235346	intron	SKIP +	chr3R	22236029	intron	SKIP +	chr3R_8_22235001	chr3R_22235001	D17-c3
2717	chr3R	22234687	22234715	chr3R	22236005	22236059	pogo	14	1340	3.5	5.0	4.2	2.7	1372	chr3R	22234687	intron	SKIP +	chr3R	22235373	intron	SKIP +	chr3R	22236059	intron	SKIP +	chr3R_14_22235001	chr3R_22235001	D17-c3
2718	chr3R	22239466	22239525	chr3R	22248551	22248598	roo	15	9077	8.0	0.0	4.0	3.0	9132	chr3R	22239466	intron	SKIP +	chr3R	22244032	intron	SKIP +	chr3R	22248598	intron	SKIP +	chr3R_15_22240001	chr3R_22240001	D17-c3
2726	chr3R	22450525	22450575	chr3R	22453190	22453240	NOF	25	2664	6.5	12.5	9.5	2.4	2715	chr3R	22450525	intron	CG34376 +	chr3R	22451882	intron	CG34376 +	chr3R	22453240	intron	CG34376 +	chr3R_25_22450001	chr3R_22450001	D17-c3
2736	chr3R	22881183	22881229	chr3R	22884914	22884958	Doc	7	3729	4.5	5.5	5.0	1.2	3775	chr3R	22881183	intergenic	not near genes	chr3R	22883070	intergenic	not near genes	chr3R	22884958	intergenic	not near genes	chr3R_7_22880001	chr3R_22880001	D17-c3
2749	chr3R	23558373	23558427	chr3R	23560179	23560233	Bari1	29	1806	3.0	4.5	3.8	6.0	1860	chr3R	23558373	intron	beat-IV +	chr3R	23559303	intron	beat-IV +	chr3R	23560233	intron	beat-IV +	chr3R_29_23555001	chr3R_23555001	D17-c3
2751	chr3R	23835385	23835434	chr3R	23844559	23844607	roo	9	9174	4.5	0.0	2.2	2.8	9222	chr3R	23835385	intron	CG34355 +	chr3R	23839996	intron	CG34355 +	chr3R	23844607	intron	CG34355 +	chr3R_9_23835001	chr3R_23835001	D17-c3
2752	chr3R	23851066	23851088	chr3R	23858758	23858780	opus	6	7692	3.5	8.5	6.0	0.9	7714	chr3R	23851066	3` UTR	CG34355 +	chr3R	23854923	intergenic	not near genes	chr3R	23858780	intergenic	not near genes	chr3R_6_23850001	chr3R_23850001	D17-c3
2758	chr3R	24072062	24072122	chr3R	24072525	24072583	jockey	15	459	10.0	0.0	5.0	2.5	521	chr3R	24072062	intron	4EHP -	chr3R	24072322	intron	4EHP -	chr3R	24072583	intron	4EHP -	chr3R_15_24070001	chr3R_24070001	D17-c3
2759	chr3R	24076894	24076915	chr3R	24078386	24078407	hobo	7	1491	16.5	12.5	14.5	0.5	1513	chr3R	24076894	intron	4EHP -	chr3R	24077650	intron	4EHP -	chr3R	24078407	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	D17-c3
2760	chr3R	24076918	24076944	chr3R	24078381	24078401	hobo	12	1483	8.0	11.0	9.5	1.1	1483	chr3R	24076918	intron	4EHP -	chr3R	24077660	intron	4EHP -	chr3R	24078401	intron	4EHP -	chr3R_12_24075001	chr3R_24075001	D17-c3
2765	chr3R	24207197	24207244	chr3R	24212298	24212345	flea	33	5101	10.0	10.5	10.2	2.9	5148	chr3R	24207197	intron	twin -	chr3R	24209771	intron	twin -	chr3R	24212345	intron	twin -	chr3R_33_24205001	chr3R_24205001	D17-c3
2768	chr3R	24594652	24594665	chr3R	24594917	24594930	pogo	7	264	5.0	11.0	8.0	0.8	278	chr3R	24594652	intron	mld +	chr3R	24594791	intron	mld +	chr3R	24594930	intron	mld +	chr3R_7_24590001	chr3R_24590001	D17-c3
2780	chr3R	24927106	24927114	chr3R	24931922	24931930	Doc	9	4815	14.0	11.0	12.5	0.7	4824	chr3R	24927106	intergenic	Trf4-2 +	chr3R	24929518	intergenic	not near genes	chr3R	24931930	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	D17-c3
2781	chr3R	24927117	24927151	chr3R	24931919	24931967	Doc	25	4812	6.5	11.0	8.8	2.6	4850	chr3R	24927117	intergenic	Trf4-2 +	chr3R	24929542	intergenic	not near genes	chr3R	24931967	intergenic	CG11771 +	chr3R_25_24925001	chr3R_24925001	D17-c3
2800	chr3R	25725806	25725861	chr3R	25734991	25735041	roo	14	9185	6.0	8.0	7.0	1.8	9235	chr3R	25725806	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735041	intron	LpR2 -	chr3R_14_25730001	chr3R_25730001	D17-c3
2802	chr3R	26108802	26108818	chr3R	26117410	26117426	Tirant	8	8607	15.5	0.0	7.8	0.9	8624	chr3R	26108802	5` UTR	CG31324 +	chr3R	26113114	intron	CG31324 +	chr3R	26117426	intron	CG31324 +	chr3R_8_26110001	chr3R_26110001	D17-c3
2809	chr3R	26376300	26376341	chr3R	26385485	26385526	roo	22	9185	14.0	0.0	7.0	2.8	9226	chr3R	26376300	intergenic	not near genes	chr3R	26380913	intergenic	not near genes	chr3R	26385526	intergenic	not near genes	chr3R_22_26380001	chr3R_26380001	D17-c3
2813	chr3R	26558299	26558360	chr3R	26565637	26565676	Stalker4	43	7334	6.0	5.5	5.8	6.3	7377	chr3R	26558299	intron	scrib +	chr3R	26561988	intron	scrib +	chr3R	26565676	intron	scrib +	chr3R_43_26560001	chr3R_26560001	D17-c3
2815	chr3R	26642715	26642757	chr3R	26643133	26643176	jockey	18	418	7.5	5.0	6.2	2.5	461	chr3R	26642715	intergenic	not near genes	chr3R	26642946	intergenic	not near genes	chr3R	26643176	intergenic	not near genes	chr3R_18_26640001	chr3R_26640001	D17-c3
2820	chr3R	26810530	26810578	chr3R	26811040	26811088	roo	18	510	5.0	8.0	6.5	2.4	558	chr3R	26810530	intron	Tl +	chr3R	26810809	intron	Tl +	chr3R	26811088	intron	Tl +	chr3R_18_26810001	chr3R_26810001	D17-c3
2825	chr3R	27007381	27007428	chr3R	27016541	27016588	roo	17	9157	4.0	5.5	4.8	2.9	9207	chr3R	27007381	intron	RYa-R +	chr3R	27011984	intron	RYa-R +	chr3R	27016588	intron	RYa-R +	chr3R_17_27010001	chr3R_27010001	D17-c3
2829	chr3R	27140490	27140545	chr3R	27148125	27148180	412	21	7635	6.0	8.0	7.0	2.6	7690	chr3R	27140490	intron	CG6051 -	chr3R	27144335	intron	CG6051 -	chr3R	27148180	intron	CG6051 -	chr3R_21_27140001	chr3R_27140001	D17-c3
2833	chr3R	27342772	27342824	chr3R	27351378	27351423	Tirant	29	8605	6.0	10.0	8.0	3.2	8651	chr3R	27342772	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351423	intron	CG42534 +	chr3R_29_27345001	chr3R_27345001	D17-c3
2837	chr3R	27521159	27521180	chr3R	27530393	27530414	roo	12	9234	7.0	6.0	6.5	1.6	9255	chr3R	27521159	intron	CG12885 +	chr3R	27525786	intron	CG12885 +	chr3R	27530414	intron	CG12885 +	chr3R_12_27525001	chr3R_27525001	D17-c3
2843	chr3R	27725545	27725588	chr3R	27731012	27731055	I-element	21	5466	6.5	9.0	7.8	2.4	5510	chr3R	27725545	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731055	intergenic	not near genes	chr3R_21_27725001	chr3R_27725001	D17-c3
2846	chr3R	27791642	27791647	chr3R	27794793	27794814	Rt1c	5	3162	19.5	13.5	16.5	0.3	3172	chr3R	27791642	intron	CG34353 -	chr3R	27793228	intron	CG34353 -	chr3R	27794814	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	D17-c3
2847	chr3R	27856740	27856789	chr3R	27858248	27858297	hopper2	21	1507	6.5	5.0	5.8	3.1	1557	chr3R	27856740	intron	CG34353 -	chr3R	27857518	intron	CG34353 -	chr3R	27858297	intron	CG34353 -	chr3R_21_27855001	chr3R_27855001	D17-c3
2848	chr3R	27862938	27862980	chr3R	27868263	27868310	Transpac	13	5325	6.0	6.5	6.2	1.8	5372	chr3R	27862938	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868310	intron	CG34353 -	chr3R_13_27865001	chr3R_27865001	D17-c3
2849	chr3R	27875680	27875726	chr3R	27882759	27882806	297	22	7080	4.5	12.0	8.2	2.4	7126	chr3R	27875680	intron	CG34353 -	chr3R	27879243	intron	CG34353 -	chr3R	27882806	intron	CG34353 -	chr3R_22_27875001	chr3R_27875001	D17-c3
2853	chr3R	28068474	28068482	chr3R	28073940	28073949	I-element	4	5467	0.0	6.5	3.2	1.0	5475	chr3R	28068474	intron	CG34362 +	chr3R	28071212	intron	CG34362 +	chr3R	28073949	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	D17-c3
2854	chr3R	28068483	28068523	chr3R	28073935	28073990	I-element	22	5466	0.0	6.0	3.0	5.5	5507	chr3R	28068483	intron	CG34362 +	chr3R	28071236	intron	CG34362 +	chr3R	28073990	intron	CG34362 +	chr3R_22_28070001	chr3R_28070001	D17-c3
2855	chr3R	28173651	28173703	chr3R	28181106	28181158	mdg1	15	7455	3.5	5.5	4.5	2.7	7507	chr3R	28173651	intron	CG34354 +	chr3R	28177404	intron	CG34354 +	chr3R	28181158	intron	CG34354 +	chr3R_15_28175001	chr3R_28175001	D17-c3
2856	chr3R	28253316	28253368	chr3R	28255851	28255903	jockey	20	2532	5.5	2.5	4.0	4.0	2587	chr3R	28253316	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255903	intergenic	not near genes	chr3R_20_28250001	chr3R_28250001	D17-c3
2857	chr3R	28302081	28302129	chr3R	28302545	28302593	jockey	33	463	4.0	7.5	5.8	4.9	512	chr3R	28302081	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302593	intergenic	not near genes	chr3R_33_28300001	chr3R_28300001	D17-c3
2873	chr3R	28758263	28758278	chr3R	28763905	28763920	roo	5	5642	16.0	0.0	8.0	0.6	5657	chr3R	28758263	intergenic	aqrs -	chr3R	28761092	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	D17-c3
2874	chr3R	28792874	28792902	chr3R	28797969	28798014	jockey	12	5107	5.0	2.5	3.8	2.5	5140	chr3R	28792874	intergenic	not near genes	chr3R	28795444	intergenic	not near genes	chr3R	28798014	intergenic	not near genes	chr3R_12_28795001	chr3R_28795001	D17-c3
2884	chr3R	29079355	29079406	chr3R	29080752	29080803	NOF	22	1397	8.5	8.0	8.2	2.4	1448	chr3R	29079355	intron	CG11873 +	chr3R	29080079	intron	CG11873 +	chr3R	29080803	intron	CG11873 +	chr3R_22_29080001	chr3R_29080001	D17-c3
2893	chr3R	29319774	29319852	chr3R	29320138	29320195	jockey	19	347	0.5	7.5	4.0	3.8	421	chr3R	29319774	intergenic	Cnx99A -	chr3R	29319984	intergenic	Cnx99A -	chr3R	29320195	intergenic	not near genes	chr3R_19_29315001	chr3R_29315001	D17-c3
2898	chr3R	29406611	29406636	chr3R	29407922	29407947	jockey	9	1311	18.5	7.0	12.8	0.7	1336	chr3R	29406611	intron	Ptp99A +	chr3R	29407279	intron	Ptp99A +	chr3R	29407947	intron	Ptp99A +	chr3R_9_29405001	chr3R_29405001	D17-c3
2899	chr3R	29406637	29406644	chr3R	29407900	29407945	jockey	7	1302	14.0	3.5	8.8	0.7	1308	chr3R	29406637	intron	Ptp99A +	chr3R	29407291	intron	Ptp99A +	chr3R	29407945	intron	Ptp99A +	chr3R_7_29405001	chr3R_29405001	D17-c3
2910	chr3R	29738249	29738295	chr3R	29739741	29739787	hobo	15	1492	4.5	9.0	6.8	1.9	1538	chr3R	29738249	intergenic	CG1969 +,CG7598 +	chr3R	29739018	intron	CG1969 +	chr3R	29739787	5` UTR	CG1969 +	chr3R_15_29735001	chr3R_29735001	D17-c3
2912	chr3R	29760337	29760377	chr3R	29761563	29761603	pogo	9	1226	8.0	3.5	5.8	1.3	1266	chr3R	29760337	intergenic	not near genes	chr3R	29760970	intergenic	not near genes	chr3R	29761603	intergenic	not near genes	chr3R_9_29760001	chr3R_29760001	D17-c3
2914	chr3R	29881997	29882045	chr3R	29891179	29891227	roo	16	9182	7.0	8.0	7.5	1.9	9230	chr3R	29881997	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891227	intron	CG31038 +	chr3R_16_29885001	chr3R_29885001	D17-c3
2920	chr3R	30084828	30084876	chr3R	30086320	30086368	hobo	17	1492	10.5	7.5	9.0	1.7	1540	chr3R	30084828	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086368	intron	sima +	chr3R_17_30085001	chr3R_30085001	D17-c3
2923	chr3R	31279358	31279408	chr3R	31285571	31285624	diver	27	6215	9.5	8.0	8.8	2.8	6266	chr3R	31279358	intergenic	not near genes	chr3R	31282491	intergenic	not near genes	chr3R	31285624	intergenic	not near genes	chr3R_27_31280001	chr3R_31280001	D17-c3
2925	chr3R	31413070	31413090	chr3R	31418295	31418314	copia	14	5224	18.0	1.0	9.5	1.3	5244	chr3R	31413070	intron	Gprk2 +	chr3R	31415692	intron	Gprk2 +	chr3R	31418314	intron	Gprk2 +	chr3R_14_31415001	chr3R_31415001	D17-c3
2926	chr3R	31413092	31413115	chr3R	31418292	31418310	copia	11	5213	12.5	1.0	6.8	1.4	5218	chr3R	31413092	intron	Gprk2 +	chr3R	31415701	intron	Gprk2 +	chr3R	31418310	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	D17-c3
2930	chr3R	31691508	31691562	chr3R	31696299	31696353	Doc	32	4791	6.5	9.0	7.8	3.6	4845	chr3R	31691508	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696353	intergenic	not near genes	chr3R_32_31690001	chr3R_31690001	D17-c3
2940	chr3R	31997973	31998022	chr3R	32005462	32005517	blood	19	7493	6.0	3.5	4.8	3.3	7544	chr3R	31997973	intron	heph -	chr3R	32001745	intron	heph -	chr3R	32005517	intron	heph -	chr3R_19_32000001	chr3R_32000001	D17-c3
2942	chr4	76473	76512	chr4	81941	81980	I-element	19	5468	10.5	4.5	7.5	2.2	5507	chr4	76473	intron	pan +	chr4	79226	intron	pan +	chr4	81980	intron	pan +	chr4_19_75001	chr4_75001	D17-c3
2943	chr4	319968	320019	chr4	328171	328205	Stalker2	9	8199	4.5	9.0	6.8	1.2	8237	chr4	319968	3` UTR	CG32850 +	chr4	324086	intron	CG32850 +	chr4	328205	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_9_320001	chr4_320001	D17-c3
2944	chr4	671584	671595	chr4	680192	680203	Tirant	5	8608	23.5	12.0	17.8	0.3	8619	chr4	671584	intron	CG11360 +	chr4	675894	intron	CG11360 +	chr4	680203	intron	CG11360 +	chr4_5_675001	chr4_675001	D17-c3
2945	chr4	671597	671626	chr4	680190	680234	Tirant	19	8607	15.5	12.0	13.8	1.3	8637	chr4	671597	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680234	intron	CG11360 +	chr4_19_675001	chr4_675001	D17-c3
2948	chrX	428399	428440	chrX	434609	434650	3S18	13	6209	8.0	2.5	5.2	2.1	6251	chrX	428399	intron	CG32816 -	chrX	431524	intron	CG32816 -	chrX	434650	intron	CG32816 -	chrX_13_430001	chrX_430001	D17-c3
2949	chrX	827586	827631	chrX	835403	835448	roo	7	7817	5.0	3.0	4.0	1.4	7862	chrX	827586	intron	CG43867 -	chrX	831517	intron	CG43867 -	chrX	835448	intron	CG43867 -	chrX_7_830001	chrX_830001	D17-c3
2950	chrX	906676	906733	chrX	908490	908547	S-element	24	1814	7.5	9.5	8.5	2.5	1871	chrX	906676	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908547	intron	CG43867 -	chrX_24_905001	chrX_905001	D17-c3
2954	chrX	1627968	1627977	chrX	1635461	1635469	gtwin	5	7493	16.5	15.0	15.8	0.3	7501	chrX	1627968	intron,intron	Mur2B -,br +	chrX	1631718	intron,intron	Mur2B -,br +	chrX	1635469	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	D17-c3
2955	chrX	2308819	2308825	chrX	2317427	2317428	Tirant	5	8607	6.5	28.0	17.2	0.3	8609	chrX	2308819	intron	phl +	chrX	2313124	intron	phl +	chrX	2317428	intron	phl +	chrX_5_2310001	chrX_2310001	D17-c3
2956	chrX	2399818	2399860	chrX	2408188	2408223	roo	46	8374	14.5	17.0	15.8	2.7	8405	chrX	2399818	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408223	intergenic	not near genes	chrX_46_2400001	chrX_2400001	D17-c3
2959	chrX	2610364	2610414	chrX	2617506	2617556	HMS-Beagle	12	7142	11.0	1.5	6.2	1.7	7192	chrX	2610364	intergenic	CG8636 -	chrX	2613960	intergenic	not near genes	chrX	2617556	intergenic	Tsp3A -	chrX_12_2610001	chrX_2610001	D17-c3
2960	chrX	2664362	2664412	chrX	2665533	2665582	1360	16	1171	7.5	6.0	6.8	2.1	1220	chrX	2664362	intron	sgg +	chrX	2664972	intron	sgg +	chrX	2665582	intron	sgg +	chrX_16_2660001	chrX_2660001	D17-c3
2962	chrX	2823772	2823779	chrX	2832340	2832352	roo	6	8572	11.5	10.0	10.8	0.5	8580	chrX	2823772	intron	kirre +	chrX	2828062	intron	kirre +	chrX	2832352	intron	kirre +	chrX_6_2825001	chrX_2825001	D17-c3
2963	chrX	2844876	2844930	chrX	2852311	2852365	mdg1	17	7435	3.5	7.0	5.2	2.7	7489	chrX	2844876	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852365	intron	kirre +	chrX_17_2845001	chrX_2845001	D17-c3
2967	chrX	3057999	3058045	chrX	3058265	3058311	pogo	12	266	7.0	2.0	4.5	2.2	312	chrX	3057999	intron	kirre +	chrX	3058155	intron	kirre +	chrX	3058311	intron	kirre +	chrX_12_3055001	chrX_3055001	D17-c3
2971	chrX	3218488	3218538	chrX	3227662	3227712	roo	5	9174	1.5	2.5	2.0	1.7	9224	chrX	3218488	intron	dnc +	chrX	3223100	intron	dnc +	chrX	3227712	intron	dnc +	chrX_5_3220001	chrX_3220001	D17-c3
2978	chrX	3414999	3415037	chrX	3421209	3421247	3S18	11	6210	3.0	8.5	5.8	1.6	6248	chrX	3414999	intron,intron	CR44999 +,CG12535 -	chrX	3418123	intron,intron	CR44999 +,CG12535 -	chrX	3421247	intron,intron	CR44999 +,CG12535 -	chrX_11_3415001	chrX_3415001	D17-c3
2982	chrX	3493071	3493078	chrX	3502255	3502262	roo	7	9184	12.5	7.5	10.0	0.6	9191	chrX	3493071	intron,intron	CR44999 +,Gas8 -	chrX	3497666	intron,intron	CR44999 +,Gas8 -	chrX	3502262	intron,intron	CR44999 +,Gas8 -	chrX_7_3495001	chrX_3495001	D17-c3
2983	chrX	3493080	3493117	chrX	3502249	3502300	roo	21	9183	5.0	4.0	4.5	3.8	9220	chrX	3493080	intron,intron	CR44999 +,Gas8 -	chrX	3497690	intron,intron	CR44999 +,Gas8 -	chrX	3502300	intron,intron	CR44999 +,Gas8 -	chrX_21_3495001	chrX_3495001	D17-c3
2986	chrX	3597531	3597579	chrX	3619724	3619772	roo	31	22192	12.0	10.0	11.0	2.6	22241	chrX	3597531	intron	AstA-R1 +	chrX	3608652	intron	AstA-R1 +	chrX	3619772	intron	AstA-R1 +	chrX_31_3605001	chrX_3605001	D17-c3
2991	chrX	3726742	3726790	chrX	3730164	3730192	NOF	19	3421	4.5	0.0	2.2	5.9	3450	chrX	3726742	intron	tlk +	chrX	3728467	intron	tlk +	chrX	3730192	intron	tlk +	chrX_19_3725001	chrX_3725001	D17-c3
2995	chrX	3842329	3842343	chrX	3842572	3842576	pogo	10	242	7.0	7.0	7.0	1.2	247	chrX	3842329	intron	ec +	chrX	3842452	intron	ec +	chrX	3842576	intron	ec +	chrX_10_3840001	chrX_3840001	D17-c3
3002	chrX	3986842	3986894	chrX	3994500	3994552	412	24	7658	4.0	4.0	4.0	4.8	7710	chrX	3986842	intergenic	not near genes	chrX	3990697	intergenic	not near genes	chrX	3994552	intergenic	not near genes	chrX_24_3990001	chrX_3990001	D17-c3
3009	chrX	4157873	4157923	chrX	4164951	4165001	297	23	7078	4.0	4.5	4.2	4.4	7128	chrX	4157873	intron	Fas2 -	chrX	4161437	intron	Fas2 -	chrX	4165001	intron	Fas2 -	chrX_23_4160001	chrX_4160001	D17-c3
3024	chrX	4792355	4792396	chrX	4792813	4792854	jockey	14	458	8.0	8.0	8.0	1.6	499	chrX	4792355	intergenic	not near genes	chrX	4792604	intergenic	not near genes	chrX	4792854	intergenic	not near genes	chrX_14_4790001	chrX_4790001	D17-c3
3026	chrX	4827954	4827983	chrX	4835350	4835379	Stalker4	8	7396	3.5	10.0	6.8	1.0	7425	chrX	4827954	intergenic	not near genes	chrX	4831666	intergenic	not near genes	chrX	4835379	intergenic	not near genes	chrX_8_4830001	chrX_4830001	D17-c3
3027	chrX	4827990	4827997	chrX	4835337	4835393	Stalker4	7	7379	0.5	8.5	4.5	1.3	7403	chrX	4827990	intergenic	not near genes	chrX	4831692	intergenic	not near genes	chrX	4835393	intergenic	not near genes	chrX_7_4830001	chrX_4830001	D17-c3
3032	chrX	4990017	4990075	chrX	4997256	4997314	roo	13	7238	2.0	5.0	3.5	2.9	7297	chrX	4990017	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997314	intron	CR44833 -	chrX_13_4990001	chrX_4990001	D17-c3
3034	chrX	5096249	5096268	chrX	5103839	5103858	springer	7	7586	16.0	28.5	22.2	0.3	7609	chrX	5096249	intron,intron	CG15465 +,rg +	chrX	5100054	intron,intron	CG15465 +,rg +	chrX	5103858	intron,intron	CG15465 +,rg +	chrX_7_5100001	chrX_5100001	D17-c3
3035	chrX	5096273	5096305	chrX	5103838	5103893	springer	11	7582	20.5	28.5	24.5	0.4	7620	chrX	5096273	intron,intron	CG15465 +,rg +	chrX	5100083	intron,intron	CG15465 +,rg +	chrX	5103893	intron,intron	CG15465 +,rg +	chrX_11_5100001	chrX_5100001	D17-c3
3038	chrX	5338699	5338735	chrX	5339972	5340008	jockey	7	1276	5.0	5.5	5.2	1.1	1309	chrX	5338699	intergenic	not near genes	chrX	5339354	intergenic	not near genes	chrX	5340008	intergenic	SK +	chrX_7_5335001	chrX_5335001	D17-c3
3045	chrX	5524818	5524853	chrX	5528702	5528741	412	5	3885	5.0	1.5	3.2	1.2	3923	chrX	5524818	intergenic	snoRNA:Psi28S-3342 -	chrX	5526780	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_5_5525001	chrX_5525001	D17-c3
3047	chrX	5727399	5727414	chrX	5732163	5732178	Doc	7	4764	7.5	5.5	6.5	0.9	4779	chrX	5727399	intron	CG32758 -	chrX	5729788	intron	CG32758 -	chrX	5732178	intron	CG32758 -	chrX_7_5725001	chrX_5725001	D17-c3
3048	chrX	6335190	6335243	chrX	6337726	6337778	Tirant	14	2533	0.5	4.5	2.5	4.0	2588	chrX	6335190	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337778	5` UTR	CG3842 +	chrX_14_6335001	chrX_6335001	D17-c3
3051	chrX	6429980	6429992	chrX	6435478	6435490	Rt1c	9	5497	10.5	19.5	15.0	0.6	5510	chrX	6429980	intron	CG42340 -	chrX	6432735	intron	CG42340 -	chrX	6435490	intron	CG42340 -	chrX_9_6430001	chrX_6430001	D17-c3
3052	chrX	6562796	6562848	chrX	6571303	6571355	Tirant	33	8506	9.0	14.5	11.8	2.6	8559	chrX	6562796	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571355	intron	CG34417 +	chrX_33_6565001	chrX_6565001	D17-c3
3055	chrX	6605470	6605505	chrX	6608517	6608552	Burdock	9	3047	2.0	10.5	6.2	1.2	3082	chrX	6605470	intron	pigs +	chrX	6607011	intron	pigs +	chrX	6608552	intron	pigs +	chrX_9_6605001	chrX_6605001	D17-c3
3065	chrX	7023578	7023631	chrX	7030993	7031046	Tabor	20	7414	7.0	7.0	7.0	2.5	7468	chrX	7023578	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031046	intron	CG12541 -	chrX_20_7025001	chrX_7025001	D17-c3
3067	chrX	7125228	7125270	chrX	7134406	7134454	roo	15	9183	1.0	2.0	1.5	6.0	9226	chrX	7125228	intergenic	not near genes	chrX	7129841	intergenic	not near genes	chrX	7134454	intergenic	not near genes	chrX_15_7125001	chrX_7125001	D17-c3
3076	chrX	8031404	8031452	chrX	8035738	8035786	Juan	26	4334	13.5	9.0	11.2	2.1	4382	chrX	8031404	intergenic	not near genes	chrX	8033595	intergenic	not near genes	chrX	8035786	3` UTR	CG2233 -	chrX_26_8030001	chrX_8030001	D17-c3
3077	chrX	8364825	8364880	chrX	8365247	8365319	BS	13	432	7.0	0.5	3.8	2.7	494	chrX	8364825	intron	nAChRalpha3 -	chrX	8365072	intron	nAChRalpha3 -	chrX	8365319	intron	nAChRalpha3 -	chrX_13_8365001	chrX_8365001	D17-c3
3084	chrX	8922306	8922357	chrX	8922765	8922816	jockey	28	457	8.0	8.0	8.0	3.1	510	chrX	8922306	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922816	intron	rdgA +	chrX_28_8920001	chrX_8920001	D17-c3
3085	chrX	8927562	8927611	chrX	8929857	8929906	NOF	20	2294	7.5	12.5	10.0	1.8	2344	chrX	8927562	intron	rdgA +	chrX	8928734	intron	rdgA +	chrX	8929906	intron	rdgA +	chrX_20_8925001	chrX_8925001	D17-c3
3086	chrX	8948735	8948789	chrX	8956270	8956324	roo	16	7535	2.0	4.0	3.0	4.0	7589	chrX	8948735	intron	rdgA +	chrX	8952530	intron	rdgA +	chrX	8956324	intron	rdgA +	chrX_16_8950001	chrX_8950001	D17-c3
3095	chrX	9508114	9508157	chrX	9509657	9509700	jockey	27	1543	9.0	9.0	9.0	2.7	1586	chrX	9508114	intron	CG32700 -	chrX	9508907	intron	CG32700 -	chrX	9509700	intron	CG32700 -	chrX_27_9505001	chrX_9505001	D17-c3
3098	chrX	9575767	9575821	chrX	9576116	9576170	mdg3	24	348	17.0	14.0	15.5	1.5	403	chrX	9575767	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576170	intron,5` UTR	CG32699 -,CG42395 -	chrX_24_9575001	chrX_9575001	D17-c3
3107	chrX	10138193	10138244	chrX	10145722	10145773	412	11	7529	7.5	3.0	5.2	1.8	7580	chrX	10138193	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145773	intron,intron	RhoU +,CR44894 -	chrX_11_10140001	chrX_10140001	D17-c3
3112	chrX	10267295	10267326	chrX	10276470	10276501	roo	6	9175	0.0	3.0	1.5	2.4	9206	chrX	10267295	3` UTR	alpha-Man-I -	chrX	10271898	intron	alpha-Man-I -	chrX	10276501	3` UTR	alpha-Man-I -	chrX_6_10270001	chrX_10270001	D17-c3
3116	chrX	10348791	10348822	chrX	10356376	10356382	springer	10	7575	31.5	6.0	18.8	0.5	7591	chrX	10348791	intergenic	snoRNA:U3:9B +	chrX	10352586	intergenic	not near genes	chrX	10356382	intergenic	l(1)G0289 -	chrX_10_10350001	chrX_10350001	D17-c3
3118	chrX	10550835	10550837	chrX	10552327	10552329	hobo	4	1492	8.0	8.5	8.2	0.4	1494	chrX	10550835	intron	spri -	chrX	10551582	intron	spri -	chrX	10552329	intron	spri -	chrX_4_10550001	chrX_10550001	D17-c3
3119	chrX	10550840	10550852	chrX	10552326	10552344	hobo	8	1491	6.0	8.0	7.0	1.0	1504	chrX	10550840	intron	spri -	chrX	10551592	intron	spri -	chrX	10552344	intron	spri -	chrX_8_10550001	chrX_10550001	D17-c3
3120	chrX	10550853	10550885	chrX	10552325	10552371	hobo	13	1490	4.0	8.0	6.0	1.9	1518	chrX	10550853	intron	spri -	chrX	10551612	intron	spri -	chrX	10552371	intron	spri -	chrX_13_10550001	chrX_10550001	D17-c3
3122	chrX	10686028	10686083	chrX	10691190	10691234	roo	22	5161	4.0	7.5	5.8	3.2	5206	chrX	10686028	intron	X11Lbeta +	chrX	10688631	intron	X11Lbeta +	chrX	10691234	intron	X11Lbeta +	chrX_22_10685001	chrX_10685001	D17-c3
3126	chrX	10772649	10772698	chrX	10772757	10772806	Tirant	43	106	11.5	9.0	10.2	3.8	157	chrX	10772649	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772806	intron	CG15211 +	chrX_43_10770001	chrX_10770001	D17-c3
3131	chrX	11095978	11096023	chrX	11103105	11103149	HMS-Beagle	11	7127	5.5	9.0	7.2	1.3	7171	chrX	11095978	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103149	intron	CG42249 +	chrX_11_11095001	chrX_11095001	D17-c3
3133	chrX	11184224	11184258	chrX	11189328	11189362	flea	13	5104	16.0	5.0	10.5	1.1	5138	chrX	11184224	intergenic	not near genes	chrX	11186793	intergenic	not near genes	chrX	11189362	intergenic	not near genes	chrX_13_11185001	chrX_11185001	D17-c3
3137	chrX	11268537	11268596	chrX	11270055	11270102	hopper2	30	1516	3.0	7.5	5.2	4.8	1565	chrX	11268537	intron	CG44422 -	chrX	11269320	intron	CG44422 -	chrX	11270102	intron	CG44422 -	chrX_30_11265001	chrX_11265001	D17-c3
3139	chrX	11312036	11312093	chrX	11319414	11319436	Stalker2	11	7370	2.0	7.0	4.5	2.0	7400	chrX	11312036	intergenic	not near genes	chrX	11315736	intergenic	not near genes	chrX	11319436	intergenic	not near genes	chrX_11_11315001	chrX_11315001	D17-c3
3143	chrX	11535019	11535045	chrX	11541514	11541540	Burdock	13	6495	10.5	3.5	7.0	1.6	6521	chrX	11535019	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541540	intron	Drak +	chrX_13_11535001	chrX_11535001	D17-c3
3144	chrX	11633404	11633446	chrX	11640483	11640525	297	15	7079	3.5	8.5	6.0	2.1	7121	chrX	11633404	intron	Ptp10D +	chrX	11636964	intron	Ptp10D +	chrX	11640525	intron	Ptp10D +	chrX_15_11635001	chrX_11635001	D17-c3
3151	chrX	12168116	12168152	chrX	12173583	12173619	I-element	10	5467	3.5	3.0	3.2	2.4	5503	chrX	12168116	intron	Ten-a +	chrX	12170868	intron	Ten-a +	chrX	12173619	intron	Ten-a +	chrX_10_12170001	chrX_12170001	D17-c3
3156	chrX	12381868	12381899	chrX	12385795	12385826	flea	4	3927	2.0	5.5	3.8	0.8	3958	chrX	12381868	intergenic	not near genes	chrX	12383847	intergenic	not near genes	chrX	12385826	intergenic	not near genes	chrX_4_12380001	chrX_12380001	D17-c3
3162	chrX	9845361	9845361	chrX	12546496	12546496	gypsy5	5	2701135	41.5	16.5	29.0	0.2	2701135	chrX	9845361	intron	CG32698 +	chrX	11195928	intergenic	not near genes	chrX	12546496	intron	CG43921 -	chrX_5_11195001	chrX_11195001	D17-c3
3175	chrX	13401460	13401511	chrX	13401837	13401888	jockey	4	377	2.0	1.5	1.8	1.4	428	chrX	13401460	intergenic	CG1673 +,CG12725 -	chrX	13401674	intergenic	CG12725 -,CG1673 +	chrX	13401888	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	D17-c3
3176	chrX	13429444	13429487	chrX	13430618	13430661	jockey	9	1174	4.0	7.0	5.5	1.4	1217	chrX	13429444	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430661	intergenic	not near genes	chrX_9_13430001	chrX_13430001	D17-c3
3178	chrX	13463632	13463659	chrX	13469234	13469261	mdg3	5	5602	8.0	5.5	6.8	0.6	5629	chrX	13463632	intron	Neto +	chrX	13466446	intron	Neto +	chrX	13469261	intron	Neto +	chrX_5_13465001	chrX_13465001	D17-c3
3186	chrX	13937956	13937995	chrX	13941252	13941287	I-element	11	3294	1.0	2.0	1.5	4.4	3331	chrX	13937956	intron	mamo -	chrX	13939622	intron	mamo -	chrX	13941287	intron	mamo -	chrX_11_13935001	chrX_13935001	D17-c3
3187	chrX	14104998	14105051	chrX	14114174	14114227	roo	26	9176	5.0	3.0	4.0	5.2	9229	chrX	14104998	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114227	5` UTR	CR44657 +	chrX_26_14105001	chrX_14105001	D17-c3
3189	chrX	14157572	14157596	chrX	14163254	14163271	297	7	5681	5.0	2.5	3.8	1.5	5699	chrX	14157572	intergenic	not near genes	chrX	14160422	intergenic	not near genes	chrX	14163271	intergenic	not near genes	chrX_7_14160001	chrX_14160001	D17-c3
3196	chrX	14416297	14416337	chrX	14421090	14421129	F-element	5	4789	2.0	4.5	3.2	1.2	4832	chrX	14416297	intron	dpr8 +	chrX	14418713	intron	dpr8 +	chrX	14421129	intron	dpr8 +	chrX_5_14415001	chrX_14415001	D17-c3
3199	chrX	14636440	14636489	chrX	14641906	14641955	I-element	14	5466	4.5	4.5	4.5	2.5	5515	chrX	14636440	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641955	intron	NetA -	chrX_14_14635001	chrX_14635001	D17-c3
3201	chrX	14778022	14778049	chrX	14782842	14782871	Doc	8	4822	6.5	5.0	5.8	1.2	4849	chrX	14778022	intergenic	CG5347 +	chrX	14780446	intergenic	not near genes	chrX	14782871	intergenic	Ag5r2 -	chrX_8_14780001	chrX_14780001	D17-c3
3202	chrX	14818737	14818792	chrX	14823966	14824021	copia	17	5227	5.0	4.5	4.8	2.9	5284	chrX	14818737	intron	rut -	chrX	14821379	intron	rut -	chrX	14824021	intron	rut -	chrX_17_14820001	chrX_14820001	D17-c3
3203	chrX	14936839	14936884	chrX	14946121	14946166	roo	10	9282	3.5	0.5	2.0	3.3	9327	chrX	14936839	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946166	intron	pdgy -	chrX_10_14940001	chrX_14940001	D17-c3
3209	chrX	15273697	15273732	chrX	15274879	15274916	1360	16	1190	6.5	13.0	9.8	1.5	1219	chrX	15273697	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274916	intergenic	not near genes	chrX_16_15270001	chrX_15270001	D17-c3
3213	chrX	15413035	15413075	chrX	15417357	15417402	Juan	20	4326	10.5	6.0	8.2	2.2	4367	chrX	15413035	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417402	intron	Cngl -	chrX_20_15415001	chrX_15415001	D17-c3
3215	chrX	15435689	15435705	chrX	15436147	15436163	rover	9	458	0.0	10.5	5.2	1.5	474	chrX	15435689	intron	Cngl -	chrX	15435926	intron	Cngl -	chrX	15436163	intron	Cngl -	chrX_9_15435001	chrX_15435001	D17-c3
3225	chrX	16222770	16222804	chrX	16231145	16231178	roo	9	8374	0.0	4.5	2.2	2.8	8408	chrX	16222770	intergenic	not near genes	chrX	16226974	intergenic	not near genes	chrX	16231178	intergenic	not near genes	chrX_9_16225001	chrX_16225001	D17-c3
3226	chrX	16245927	16245958	chrX	16246059	16246090	INE-1	11	132	6.0	4.0	5.0	1.8	163	chrX	16245927	intergenic	not near genes	chrX	16246008	intergenic	not near genes	chrX	16246090	intergenic	not near genes	chrX_11_16245001	chrX_16245001	D17-c3
3231	chrX	16340642	16340697	chrX	16349822	16349879	roo	9	9181	0.0	2.0	1.0	4.5	9237	chrX	16340642	intergenic	Dsp1 +	chrX	16345260	intergenic	not near genes	chrX	16349879	intergenic	sl +	chrX_9_16345001	chrX_16345001	D17-c3
3232	chrX	16492623	16492675	chrX	16498225	16498277	mdg3	24	5602	11.0	12.0	11.5	1.9	5654	chrX	16492623	intron	para -	chrX	16495450	intron	para -	chrX	16498277	exon	para -	chrX_24_16495001	chrX_16495001	D17-c3
3242	chrX	16936006	16936031	chrX	16936449	16936474	jockey	10	443	2.5	6.5	4.5	1.8	468	chrX	16936006	intron	CG4928 +	chrX	16936240	intron	CG4928 +	chrX	16936474	intron	CG4928 +	chrX_10_16935001	chrX_16935001	D17-c3
3244	chrX	17057914	17057927	chrX	17058180	17058193	pogo	4	266	10.0	4.0	7.0	0.5	279	chrX	17057914	intron	CG45002 -	chrX	17058054	intron	CG45002 -	chrX	17058193	intron	CG45002 -	chrX_4_17055001	chrX_17055001	D17-c3
3248	chrX	17195185	17195222	chrX	17200295	17200331	flea	6	5110	7.5	4.5	6.0	0.9	5146	chrX	17195185	3` UTR	baz +	chrX	17197758	3` UTR	baz +	chrX	17200331	3` UTR	baz +	chrX_6_17195001	chrX_17195001	D17-c3
3265	chrX	17556924	17556939	chrX	17557448	17557456	mdg1	4	522	12.0	4.5	8.2	0.4	532	chrX	17556924	intron	CG43658 -	chrX	17557190	intron	CG43658 -	chrX	17557456	intron	CG43658 -	chrX_4_17555001	chrX_17555001	D17-c3
3270	chrX	17792932	17792976	chrX	17796255	17796293	flea	15	3322	5.5	5.0	5.2	2.4	3361	chrX	17792932	intron	OdsH +	chrX	17794612	intron	OdsH +	chrX	17796293	intron	OdsH +	chrX_15_17790001	chrX_17790001	D17-c3
3275	chrX	18194046	18194099	chrX	18194606	18194659	BS	18	558	4.5	6.5	5.5	2.8	613	chrX	18194046	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194659	intron	Frq2 +	chrX_18_18190001	chrX_18190001	D17-c3
3281	chrX	18429471	18429521	chrX	18434806	18434857	Transpac	13	5336	5.0	6.5	5.8	1.9	5386	chrX	18429471	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434857	intergenic	not near genes	chrX_13_18430001	chrX_18430001	D17-c3
3293	chrX	18754320	18754343	chrX	18758012	18758035	297	11	3692	7.0	4.5	5.8	1.6	3715	chrX	18754320	intergenic	not near genes	chrX	18756178	intergenic	not near genes	chrX	18758035	intergenic	not near genes	chrX_11_18755001	chrX_18755001	D17-c3
3296	chrX	18957055	18957072	chrX	18965736	18965753	roo	4	8681	1.0	0.0	0.5	2.7	8698	chrX	18957055	intron	CG43759 +	chrX	18961404	intron	CG43759 +	chrX	18965753	intron	CG43759 +	chrX_4_18960001	chrX_18960001	D17-c3
3300	chrX	19060386	19060414	chrX	19065195	19065223	Doc	4	4809	6.5	4.0	5.2	0.6	4837	chrX	19060386	intron	CG14190 +	chrX	19062804	intron	CG14190 +	chrX	19065223	intron	CG14190 +	chrX_4_19060001	chrX_19060001	D17-c3
3310	chrX	19136529	19136583	chrX	19143474	19143526	412	16	6942	6.5	1.5	4.0	3.2	6997	chrX	19136529	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143526	3` UTR	RhoGAP18B -	chrX_16_19140001	chrX_19140001	D17-c3
3314	chrX	19356975	19357023	chrX	19358441	19358507	NOF	10	1471	5.5	0.0	2.8	2.6	1532	chrX	19356975	intron	kek5 +	chrX	19357741	intron	kek5 +	chrX	19358507	intron	kek5 +	chrX_10_19355001	chrX_19355001	D17-c3
3315	chrX	19380138	19380184	chrX	19380404	19380450	pogo	21	265	10.0	2.5	6.2	2.9	312	chrX	19380138	intron	kek5 +	chrX	19380294	intron	kek5 +	chrX	19380450	intron	kek5 +	chrX_21_19380001	chrX_19380001	D17-c3
3317	chrX	19472099	19472154	chrX	19472694	19472729	jockey	17	585	3.5	7.5	5.5	2.6	630	chrX	19472099	intergenic	kek5 +	chrX	19472414	intergenic	kek5 +	chrX	19472729	intergenic	not near genes	chrX_17_19470001	chrX_19470001	D17-c3
3320	chrX	19710047	19710099	chrX	19711858	19711910	S-element	39	1811	11.5	8.5	10.0	3.5	1863	chrX	19710047	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711910	intron	meso18E -	chrX_39_19710001	chrX_19710001	D17-c3
3322	chrX	19797327	19797340	chrX	19804665	19804678	Stalker4	7	7338	15.0	7.0	11.0	0.6	7351	chrX	19797327	intergenic	not near genes	chrX	19801002	intergenic	not near genes	chrX	19804678	intergenic	not near genes	chrX_7_19800001	chrX_19800001	D17-c3
3340	chrX	20377325	20377340	chrX	20378817	20378832	hobo	6	1492	6.5	18.5	12.5	0.4	1507	chrX	20377325	intergenic	not near genes	chrX	20378078	intergenic	not near genes	chrX	20378832	intergenic	not near genes	chrX_6_20375001	chrX_20375001	D17-c3
3344	chrX	20504109	20504155	chrX	20505655	20505701	transib2	15	1545	5.5	5.0	5.2	2.4	1592	chrX	20504109	intron	RhoGAP19D -	chrX	20504905	intron	RhoGAP19D -	chrX	20505701	intron	RhoGAP19D -	chrX_15_20500001	chrX_20500001	D17-c3
3358	chrX	20836706	20836758	chrX	20844333	20844385	roo	12	7627	1.5	5.0	3.2	2.9	7679	chrX	20836706	intron	shakB -	chrX	20840546	intron	shakB -	chrX	20844385	intron	shakB -	chrX_12_20840001	chrX_20840001	D17-c3
3360	chrX	20940699	20940735	chrX	20942193	20942229	hobo	16	1494	6.5	7.0	6.8	2.1	1530	chrX	20940699	intergenic	not near genes	chrX	20941464	intergenic	not near genes	chrX	20942229	intergenic	not near genes	chrX_16_20940001	chrX_20940001	D17-c3
3366	chrX	21061859	21061894	chrX	21062370	21062405	roo	4	511	2.5	3.0	2.8	1.1	546	chrX	21061859	intron	bves +	chrX	21062132	intron	bves +	chrX	21062405	intron,3` UTR	bves +,CG32512 -	chrX_4_21060001	chrX_21060001	D17-c3
3368	chrX	21086112	21086159	chrX	21087166	21087213	jockey	13	1054	6.0	6.0	6.0	1.9	1101	chrX	21086112	intergenic	not near genes	chrX	21086662	intergenic	not near genes	chrX	21087213	intergenic	not near genes	chrX_13_21085001	chrX_21085001	D17-c3
3389	chrX	21458691	21458714	chrX	21464152	21464175	Ivk	6	5461	5.5	7.0	6.2	0.8	5484	chrX	21458691	intergenic	not near genes	chrX	21461433	intergenic	not near genes	chrX	21464175	intergenic	not near genes	chrX_6_21460001	chrX_21460001	D17-c3
3390	chrX	21474381	21474435	chrX	21474772	21474826	1731	26	391	4.0	5.5	4.8	4.5	445	chrX	21474381	intergenic	not near genes	chrX	21474604	intergenic	not near genes	chrX	21474826	intergenic	not near genes	chrX_26_21470001	chrX_21470001	D17-c3
3394	chrX	22522605	22522652	chrX	22525450	22525493	NOF	12	2843	5.5	4.0	4.8	2.1	2888	chrX	22522605	intron	CG17600 +	chrX	22524049	intron	CG17600 +	chrX	22525493	intron	CG17600 +	chrX_12_22520001	chrX_22520001	D17-c3
3398	chrX	22697475	22697521	chrX	22701797	22701843	Juan	16	4322	10.5	7.5	9.0	1.6	4368	chrX	22697475	intron	CR44997 +	chrX	22699659	intron	CR44997 +	chrX	22701843	intron	CR44997 +	chrX_16_22695001	chrX_22695001	D17-c3
3399	chrX	22771481	22771538	chrX	22774797	22774799	297	20	3307	4.0	4.0	4.0	4.0	3318	chrX	22771481	intron	CR44997 +	chrX	22773140	intron	CR44997 +	chrX	22774799	intron	CR44997 +	chrX_20_22770001	chrX_22770001	D17-c3
3402	chrX	22811977	22812005	chrX	22816774	22816802	F-element	11	4796	6.5	6.0	6.2	1.5	4825	chrX	22811977	intergenic	CG12446 -	chrX	22814390	intergenic	not near genes	chrX	22816802	intergenic	not near genes	chrX_11_22810001	chrX_22810001	D17-c3
3406	chrX	22967370	22967527	chrX	23154546	23154691	diver	5	187173	2.5	22.0	12.2	0.4	187321	chrX	22967370	intergenic	not near genes	chrX	23061030	intergenic	not near genes	chrX	23154691	intergenic	not near genes	chrX_5_23060001	chrX_23060001	D17-c3
3407	chrX	22987093	22987132	chrX	22989777	22989816	Burdock	9	2684	3.5	3.5	3.5	2.0	2723	chrX	22987093	intron,intron	stnA -,stnB -	chrX	22988454	intron,intron	stnA -,stnB -	chrX	22989816	intron,intron	stnA -,stnB -	chrX_9_22985001	chrX_22985001	D17-c3
3409	chrX	22996292	22996339	chrX	23003549	23003596	roo	11	7257	4.0	3.5	3.8	2.3	7304	chrX	22996292	intron,intron	stnA -,stnB -	chrX	22999944	intron,intron	stnA -,stnB -	chrX	23003596	intron,intron	stnA -,stnB -	chrX_11_22995001	chrX_22995001	D17-c3
3410	chrY	424991	425007	chrY	685047	685063	Rt1c	4	260056	0.0	0.0	0.0	4.0	260072	chrY	424991	intergenic	not near genes	chrY	555027	intron	kl-3 +	chrY	685063	intergenic	not near genes	chrY_4_555001	chrY_555001	D17-c3