SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47444	47480	chr2L	52574	52610	jockey	19	5130	6.5	11.0	8.8	1.9	5166	chr2L	47444	intron	Cda5 -	chr2L	50027	intron	Cda5 -	chr2L	52610	intron	Cda5 -	chr2L_19_50001	chr2L_50001	D16-c3
4	chr2L	347860	347913	chr2L	355385	355438	blood	16	7525	4.5	4.0	4.2	3.1	7578	chr2L	347860	3` UTR	Plc21C +	chr2L	351649	intron	Plc21C +	chr2L	355438	3` UTR	Plc21C +	chr2L_16_350001	chr2L_350001	D16-c3
12	chr2L	686919	686945	chr2L	695984	696010	roo	11	9065	6.5	9.0	7.8	1.2	9091	chr2L	686919	intron	ds -	chr2L	691464	intron	ds -	chr2L	696010	intron	ds -	chr2L_11_690001	chr2L_690001	D16-c3
15	chr2L	770438	770491	chr2L	772244	772297	Bari1	21	1806	10.0	8.0	9.0	2.1	1859	chr2L	770438	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772297	intergenic	CR44614 +	chr2L_21_770001	chr2L_770001	D16-c3
19	chr2L	1220106	1220155	chr2L	1227597	1227646	blood	19	7491	6.5	2.0	4.2	3.7	7540	chr2L	1220106	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227646	intron	CG42329 +	chr2L_19_1220001	chr2L_1220001	D16-c3
21	chr2L	1301732	1301771	chr2L	1302296	1302323	gypsy	15	563	5.5	4.0	4.8	2.6	591	chr2L	1301732	intergenic	not near genes	chr2L	1302028	intergenic	not near genes	chr2L	1302323	intergenic	not near genes	chr2L_15_1300001	chr2L_1300001	D16-c3
34	chr2L	1570670	1570717	chr2L	1573565	1573614	F-element	23	2897	6.5	6.5	6.5	3.1	2944	chr2L	1570670	intron	haf +	chr2L	1572142	intron	haf +	chr2L	1573614	intron	haf +	chr2L_23_1570001	chr2L_1570001	D16-c3
41	chr2L	1678936	1679002	chr2L	1686444	1686492	blood	12	7502	0.5	6.0	3.2	2.9	7556	chr2L	1678936	intron	chinmo +	chr2L	1682714	intron	chinmo +	chr2L	1686492	intron	chinmo +	chr2L_12_1680001	chr2L_1680001	D16-c3
42	chr2L	1711339	1711387	chr2L	1711688	1711736	mdg3	31	349	7.5	12.0	9.8	2.9	397	chr2L	1711339	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711538	3` UTR	frtz -	chr2L	1711736	3` UTR	frtz -	chr2L_31_1710001	chr2L_1710001	D16-c3
51	chr2L	2100375	2100408	chr2L	2109551	2109552	roo	16	9160	6.0	15.5	10.8	1.4	9177	chr2L	2100375	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_16_2100001	chr2L_2100001	D16-c3
52	chr2L	2112086	2112142	chr2L	2119773	2119829	opus	38	7685	11.5	8.0	9.8	3.5	7743	chr2L	2112086	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119829	intergenic	not near genes	chr2L_38_2115001	chr2L_2115001	D16-c3
57	chr2L	2294014	2294071	chr2L	2299244	2299301	copia	37	5229	8.0	6.5	7.2	4.5	5287	chr2L	2294014	intergenic	not near genes	chr2L	2296658	intergenic	not near genes	chr2L	2299301	intergenic	not near genes	chr2L_37_2295001	chr2L_2295001	D16-c3
61	chr2L	2565532	2565563	chr2L	2571630	2571661	297	12	6097	4.0	10.5	7.2	1.5	6129	chr2L	2565532	exon	Cyp309a2 -	chr2L	2568596	intron	Cyp309a2 -	chr2L	2571661	exon	Cyp309a2 -	chr2L_12_2565001	chr2L_2565001	D16-c3
67	chr2L	2661185	2661226	chr2L	2663048	2663089	I-element	25	1860	7.0	15.5	11.2	2.0	1904	chr2L	2661185	intergenic	not near genes	chr2L	2662137	intergenic	not near genes	chr2L	2663089	intergenic	not near genes	chr2L_25_2660001	chr2L_2660001	D16-c3
68	chr2L	2661227	2661232	chr2L	2663041	2663058	I-element	6	1838	6.0	14.0	10.0	0.5	1831	chr2L	2661227	intergenic	not near genes	chr2L	2662142	intergenic	not near genes	chr2L	2663058	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	D16-c3
71	chr2L	2772590	2772620	chr2L	2779197	2779226	297	17	6605	12.5	8.5	10.5	1.5	6636	chr2L	2772590	3` UTR	Syt1 -	chr2L	2775908	intron	Syt1 -	chr2L	2779226	3` UTR	Syt1 -	chr2L_17_2775001	chr2L_2775001	D16-c3
77	chr2L	3073008	3073054	chr2L	3078236	3078282	copia	27	5228	5.0	9.0	7.0	3.4	5274	chr2L	3073008	intron	toc -	chr2L	3075645	intron	toc -	chr2L	3078282	intron	toc -	chr2L_27_3075001	chr2L_3075001	D16-c3
87	chr2L	3202718	3202742	chr2L	3210172	3210196	mdg1	10	7453	4.0	1.0	2.5	2.9	7478	chr2L	3202718	intergenic	not near genes	chr2L	3206457	intergenic	not near genes	chr2L	3210196	intergenic	CR45336 +	chr2L_10_3205001	chr2L_3205001	D16-c3
89	chr2L	3251469	3251522	chr2L	3259059	3259112	springer	13	7588	3.5	8.0	5.8	1.9	7643	chr2L	3251469	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259112	intergenic	not near genes	chr2L_13_3255001	chr2L_3255001	D16-c3
95	chr2L	3649765	3649806	chr2L	3654992	3655032	copia	12	5227	0.0	4.0	2.0	4.0	5267	chr2L	3649765	intron	for -	chr2L	3652398	intron	for -	chr2L	3655032	intron	for -	chr2L_12_3650001	chr2L_3650001	D16-c3
106	chr2L	4661821	4661854	chr2L	4669426	4669457	opus	10	7605	8.0	9.5	8.8	1.0	7636	chr2L	4661821	intergenic	not near genes	chr2L	4665639	intergenic	not near genes	chr2L	4669457	intergenic	not near genes	chr2L_10_4665001	chr2L_4665001	D16-c3
113	chr2L	4918143	4918189	chr2L	4923241	4923325	jockey	4	5107	3.0	0.0	1.5	1.6	5182	chr2L	4918143	intron	hoe1 -	chr2L	4920734	intron	hoe1 -	chr2L	4923325	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	D16-c3
127	chr2L	5827687	5827725	chr2L	5836720	5836758	roo	9	9033	2.5	6.5	4.5	1.6	9071	chr2L	5827687	intron	TrissinR +	chr2L	5832222	intron	TrissinR +	chr2L	5836758	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	D16-c3
148	chr2L	6279615	6279653	chr2L	6279719	6279757	INE-1	10	104	6.0	1.0	3.5	2.2	142	chr2L	6279615	intron	Ddr +	chr2L	6279686	intron	Ddr +	chr2L	6279757	intron	Ddr +	chr2L_10_6275001	chr2L_6275001	D16-c3
152	chr2L	6363135	6363175	chr2L	6366086	6366126	Burdock	15	2951	5.0	4.5	4.8	2.6	2991	chr2L	6363135	intergenic	not near genes	chr2L	6364630	intergenic	not near genes	chr2L	6366126	intergenic	not near genes	chr2L_15_6360001	chr2L_6360001	D16-c3
154	chr2L	6426846	6426881	chr2L	6445131	6445166	roo	11	18285	3.5	9.5	6.5	1.5	18320	chr2L	6426846	3` UTR	CG9527 -	chr2L	6436006	intron	CG9527 -	chr2L	6445166	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	D16-c3
167	chr2L	6876752	6876801	chr2L	6882968	6883017	diver	9	6213	10.5	11.5	11.0	0.8	6265	chr2L	6876752	intron	Nlg2 +	chr2L	6879884	intron	Nlg2 +	chr2L	6883017	intron	Nlg2 +	chr2L_9_6875001	chr2L_6875001	D16-c3
171	chr2L	6991395	6991433	chr2L	6998554	6998581	HMS-Beagle	6	7152	0.0	10.0	5.0	1.0	7186	chr2L	6991395	intron	uif -	chr2L	6994988	intron	uif -	chr2L	6998581	intron	uif -	chr2L_6_6990001	chr2L_6990001	D16-c3
184	chr2L	7343301	7343356	chr2L	7350442	7350497	roo	39	7140	9.0	10.5	9.8	3.6	7196	chr2L	7343301	intron	Wnt6 +	chr2L	7346899	intron	Wnt6 +	chr2L	7350497	intron	Wnt6 +	chr2L_39_7345001	chr2L_7345001	D16-c3
190	chr2L	7548094	7548111	chr2L	7550555	7550572	Burdock	5	2461	9.0	14.0	11.5	0.4	2478	chr2L	7548094	intron	RapGAP1 -	chr2L	7549333	intron	RapGAP1 -	chr2L	7550572	intron	RapGAP1 -	chr2L_5_7545001	chr2L_7545001	D16-c3
200	chr2L	7959019	7959071	chr2L	7960455	7960509	pogo	17	1436	4.5	1.0	2.8	4.5	1490	chr2L	7959019	intron	Snoo -	chr2L	7959764	intron	Snoo -	chr2L	7960509	intron	Snoo -	chr2L_17_7955001	chr2L_7955001	D16-c3
202	chr2L	7977064	7977113	chr2L	7984064	7984111	297	46	6999	14.0	15.0	14.5	3.0	7047	chr2L	7977064	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984111	intron,5` UTR	Snoo -,CG7231 +	chr2L_46_7980001	chr2L_7980001	D16-c3
203	chr2L	8013596	8013609	chr2L	8018822	8018838	copia	6	5228	11.5	0.0	5.8	0.9	5242	chr2L	8013596	intron	Tg +	chr2L	8016217	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_6_8015001	chr2L_8015001	D16-c3
204	chr2L	8018815	8018835	chr2L	8023624	8023644	Doc	8	4809	0.0	5.5	2.8	2.1	4829	chr2L	8018815	intron	Tg +	chr2L	8021230	intron	Tg +	chr2L	8023644	intron	Tg +	chr2L_8_8020001	chr2L_8020001	D16-c3
212	chr2L	8452398	8452444	chr2L	8461594	8461640	roo	25	9196	9.5	6.5	8.0	2.8	9242	chr2L	8452398	intron	fu12 -	chr2L	8457019	intron	fu12 -	chr2L	8461640	intron	fu12 -	chr2L_25_8455001	chr2L_8455001	D16-c3
220	chr2L	8594442	8594496	chr2L	8601521	8601566	297	35	7079	10.5	6.5	8.5	3.7	7124	chr2L	8594442	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598004	intron	Sema-1a +	chr2L	8601566	intron	Sema-1a +	chr2L_35_8595001	chr2L_8595001	D16-c3
222	chr2L	8723092	8723144	chr2L	8731494	8731546	Tirant	30	8402	8.0	12.0	10.0	2.7	8454	chr2L	8723092	intron	raw -	chr2L	8727319	intron	raw -	chr2L	8731546	intron	raw -	chr2L_30_8725001	chr2L_8725001	D16-c3
235	chr2L	9000256	9000307	chr2L	9007791	9007842	roo	35	7535	8.5	0.0	4.2	6.7	7586	chr2L	9000256	intergenic	Try29F +	chr2L	9004049	intergenic	not near genes	chr2L	9007842	intergenic	not near genes	chr2L_35_9000001	chr2L_9000001	D16-c3
241	chr2L	9217952	9217997	chr2L	9222764	9222809	Doc	27	4812	6.0	13.0	9.5	2.6	4857	chr2L	9217952	intron	tai +	chr2L	9220380	intron	tai +	chr2L	9222809	intron	tai +	chr2L_27_9220001	chr2L_9220001	D16-c3
253	chr2L	9393505	9393530	chr2L	9396495	9396520	jockey	5	2990	0.0	14.5	7.2	0.6	3015	chr2L	9393505	intron	Shawl -	chr2L	9395012	intron	Shawl -	chr2L	9396520	intron	Shawl -	chr2L_5_9395001	chr2L_9395001	D16-c3
274	chr2L	9973706	9973753	chr2L	9980850	9980897	HMS-Beagle	27	7143	7.5	6.0	6.8	3.5	7191	chr2L	9973706	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980897	intergenic	not near genes	chr2L_27_9975001	chr2L_9975001	D16-c3
279	chr2L	10138171	10138192	chr2L	10143435	10143457	Rt1c	13	5264	3.0	13.5	8.2	1.4	5286	chr2L	10138171	intron	CG44153 -	chr2L	10140814	intron	CG44153 -	chr2L	10143457	intron	CG44153 -	chr2L_13_10140001	chr2L_10140001	D16-c3
281	chr2L	10156309	10156352	chr2L	10163804	10163845	blood	10	7493	6.5	5.0	5.8	1.5	7536	chr2L	10156309	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160077	intron	CG44153 -	chr2L	10163845	intron	CG44153 -	chr2L_10_10160001	chr2L_10160001	D16-c3
296	chr2L	10592817	10592869	chr2L	10600504	10600556	opus	17	7686	3.5	3.0	3.2	4.0	7739	chr2L	10592817	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600556	intron	Trim9 +	chr2L_17_10595001	chr2L_10595001	D16-c3
305	chr2L	10862830	10862877	chr2L	10864464	10864480	Rt1c	24	1636	4.5	8.0	6.2	3.3	1650	chr2L	10862830	3` UTR	CR43807 -	chr2L	10863655	intron	CR43807 -	chr2L	10864480	3` UTR	CR43807 -	chr2L_24_10860001	chr2L_10860001	D16-c3
306	chr2L	10876551	10876572	chr2L	10883632	10883653	297	13	7080	7.0	8.5	7.8	1.5	7102	chr2L	10876551	intergenic	not near genes	chr2L	10880102	intergenic	not near genes	chr2L	10883653	intergenic	not near genes	chr2L_13_10880001	chr2L_10880001	D16-c3
310	chr2L	10946926	10946971	chr2L	10956166	10956211	roo	24	9240	17.5	10.0	13.8	1.6	9285	chr2L	10946926	intron	dpr2 -	chr2L	10951568	intron	dpr2 -	chr2L	10956211	intron	dpr2 -	chr2L_24_10950001	chr2L_10950001	D16-c3
319	chr2L	11315256	11315269	chr2L	11317685	11317698	G2	8	2429	5.5	11.0	8.2	0.9	2442	chr2L	11315256	intergenic	not near genes	chr2L	11316477	intergenic	not near genes	chr2L	11317698	intergenic	not near genes	chr2L_8_11315001	chr2L_11315001	D16-c3
334	chr2L	11540562	11540598	chr2L	11547986	11548025	Tabor	9	7427	4.0	1.5	2.8	2.4	7463	chr2L	11540562	intergenic	not near genes	chr2L	11544294	intergenic	not near genes	chr2L	11548025	intergenic	not near genes	chr2L_9_11540001	chr2L_11540001	D16-c3
336	chr2L	11563619	11563663	chr2L	11568848	11568892	copia	18	5229	9.0	6.5	7.8	2.0	5273	chr2L	11563619	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568892	intergenic	not near genes	chr2L_18_11565001	chr2L_11565001	D16-c3
337	chr2L	11614042	11614086	chr2L	11615551	11615598	hopper2	24	1517	5.0	6.5	5.8	3.5	1556	chr2L	11614042	intron	kek2 +	chr2L	11614820	intron	kek2 +	chr2L	11615598	intron	kek2 +	chr2L_24_11610001	chr2L_11610001	D16-c3
342	chr2L	11713482	11713537	chr2L	11720975	11721030	blood	16	7493	8.5	2.5	5.5	2.5	7548	chr2L	11713482	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721030	intergenic	CR44143 +	chr2L_16_11715001	chr2L_11715001	D16-c3
364	chr2L	12067311	12067363	chr2L	12074387	12074431	297	12	7072	5.5	2.5	4.0	2.4	7120	chr2L	12067311	intergenic	not near genes	chr2L	12070871	intergenic	not near genes	chr2L	12074431	intergenic	not near genes	chr2L_12_12070001	chr2L_12070001	D16-c3
381	chr2L	12558300	12558351	chr2L	12565454	12565505	HMS-Beagle	8	7154	2.0	2.5	2.2	2.5	7205	chr2L	12558300	intergenic	not near genes	chr2L	12561902	intergenic	not near genes	chr2L	12565505	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	D16-c3
383	chr2L	12728897	12728949	chr2L	12729161	12729213	pogo	23	261	6.0	10.0	8.0	2.6	316	chr2L	12728897	intron	MRP +	chr2L	12729055	intron	MRP +	chr2L	12729213	exon	MRP +	chr2L_23_12725001	chr2L_12725001	D16-c3
384	chr2L	12731035	12731041	chr2L	12735826	12735833	F-element	5	4792	26.0	8.5	17.2	0.3	4798	chr2L	12731035	intron	MRP +	chr2L	12733434	intron	MRP +	chr2L	12735833	intron	MRP +	chr2L_5_12730001	chr2L_12730001	D16-c3
385	chr2L	12731044	12731088	chr2L	12735825	12735866	F-element	23	4791	9.5	8.0	8.8	2.3	4822	chr2L	12731044	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735866	intron	MRP +	chr2L_23_12730001	chr2L_12730001	D16-c3
386	chr2L	12739151	12739199	chr2L	12743957	12744005	Doc	36	4806	10.0	11.5	10.8	3.1	4854	chr2L	12739151	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744005	exon	MRP +	chr2L_36_12740001	chr2L_12740001	D16-c3
389	chr2L	12781775	12781815	chr2L	12789250	12789290	Quasimodo	23	7474	9.0	7.0	8.0	2.6	7515	chr2L	12781775	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789290	intergenic	not near genes	chr2L_23_12785001	chr2L_12785001	D16-c3
390	chr2L	12791596	12791628	chr2L	12795282	12795326	F-element	10	3697	2.5	2.5	2.5	2.9	3730	chr2L	12791596	intergenic	not near genes	chr2L	12793461	intergenic	not near genes	chr2L	12795326	intergenic	not near genes	chr2L_10_12790001	chr2L_12790001	D16-c3
393	chr2L	12861671	12861675	chr2L	12863163	12863167	hobo	5	1492	21.5	6.5	14.0	0.3	1496	chr2L	12861671	intergenic	not near genes	chr2L	12862419	intergenic	not near genes	chr2L	12863167	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	D16-c3
394	chr2L	12861676	12861727	chr2L	12863161	12863183	hobo	25	1496	4.0	6.5	5.2	4.0	1507	chr2L	12861676	intergenic	not near genes	chr2L	12862430	intergenic	not near genes	chr2L	12863183	intergenic	not near genes	chr2L_25_12860001	chr2L_12860001	D16-c3
396	chr2L	12894005	12894048	chr2L	12895497	12895540	hobo	31	1491	8.5	12.0	10.2	2.8	1535	chr2L	12894005	intergenic	not near genes	chr2L	12894772	intergenic	not near genes	chr2L	12895540	intergenic	not near genes	chr2L_31_12890001	chr2L_12890001	D16-c3
398	chr2L	12933827	12933879	chr2L	12941319	12941371	blood	29	7492	11.5	7.5	9.5	2.8	7544	chr2L	12933827	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941371	intergenic	not near genes	chr2L_29_12935001	chr2L_12935001	D16-c3
407	chr2L	13405627	13405673	chr2L	13410444	13410495	Doc	32	4822	17.0	9.0	13.0	2.3	4868	chr2L	13405627	exon	CG7110 +	chr2L	13408061	intron	CG7110 +	chr2L	13410495	intron	CG7110 +	chr2L_32_13405001	chr2L_13405001	D16-c3
410	chr2L	13449448	13449490	chr2L	13456909	13456949	Quasimodo	31	7461	8.0	16.0	12.0	2.4	7501	chr2L	13449448	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456949	intron	CG42784 +	chr2L_31_13450001	chr2L_13450001	D16-c3
411	chr2L	13481431	13481469	chr2L	13482063	13482101	jockey	44	632	17.0	23.0	20.0	2.1	670	chr2L	13481431	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482101	intron	CG42784 +	chr2L_44_13480001	chr2L_13480001	D16-c3
412	chr2L	13522259	13522289	chr2L	13527590	13527617	Transpac	14	5329	4.5	11.0	7.8	1.6	5358	chr2L	13522259	intron	B4 -	chr2L	13524938	intron	B4 -	chr2L	13527617	intron	B4 -	chr2L_14_13520001	chr2L_13520001	D16-c3
420	chr2L	13761780	13761835	chr2L	13762916	13762971	Doc	24	1136	9.0	7.5	8.2	2.6	1191	chr2L	13761780	intron	TM9SF4 +	chr2L	13762376	intron	TM9SF4 +	chr2L	13762971	intron	TM9SF4 +	chr2L_24_13760001	chr2L_13760001	D16-c3
423	chr2L	13853064	13853110	chr2L	13862239	13862285	roo	34	9175	14.0	7.5	10.8	2.9	9221	chr2L	13853064	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862285	intron	CenG1A +	chr2L_34_13855001	chr2L_13855001	D16-c3
445	chr2L	14642548	14642601	chr2L	14651736	14651789	roo	39	9188	11.5	10.0	10.8	3.3	9241	chr2L	14642548	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651789	intron	osp -	chr2L_39_14645001	chr2L_14645001	D16-c3
448	chr2L	14803855	14803907	chr2L	14809083	14809135	copia	33	5228	13.0	6.5	9.8	3.1	5280	chr2L	14803855	intergenic	not near genes	chr2L	14806495	intergenic	not near genes	chr2L	14809135	intergenic	not near genes	chr2L_33_14805001	chr2L_14805001	D16-c3
452	chr2L	14889927	14889982	chr2L	14890377	14890432	jockey	25	450	7.5	8.5	8.0	2.8	505	chr2L	14889927	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890432	intergenic	not near genes	chr2L_25_14890001	chr2L_14890001	D16-c3
454	chr2L	14984373	14984400	chr2L	14991984	14992011	opus	8	7611	10.5	7.5	9.0	0.8	7638	chr2L	14984373	intron	mol -	chr2L	14988192	intron	mol -	chr2L	14992011	intron	mol -	chr2L_8_14985001	chr2L_14985001	D16-c3
473	chr2L	15446025	15446083	chr2L	15453519	15453575	blood	40	7494	8.0	8.0	8.0	4.4	7550	chr2L	15446025	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453575	intergenic	not near genes	chr2L_40_15445001	chr2L_15445001	D16-c3
478	chr2L	15586384	15586436	chr2L	15593461	15593513	297	36	7076	12.0	10.0	11.0	3.0	7129	chr2L	15586384	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593513	intergenic	not near genes	chr2L_36_15585001	chr2L_15585001	D16-c3
483	chr2L	15773552	15773586	chr2L	15773658	15773692	INE-1	19	106	2.0	2.5	2.2	5.9	140	chr2L	15773552	intergenic	CG31826 -	chr2L	15773622	intergenic	not near genes	chr2L	15773692	intergenic	not near genes	chr2L_19_15770001	chr2L_15770001	D16-c3
485	chr2L	15826879	15826891	chr2L	15829298	15829308	Tabor	6	2419	4.0	11.5	7.8	0.7	2429	chr2L	15826879	intergenic	not near genes	chr2L	15828094	intergenic	not near genes	chr2L	15829308	intergenic	not near genes	chr2L_6_15825001	chr2L_15825001	D16-c3
489	chr2L	15956016	15956052	chr2L	15957508	15957544	hobo	12	1492	4.0	4.0	4.0	2.4	1528	chr2L	15956016	intron	beat-Ib -	chr2L	15956780	intron	beat-Ib -	chr2L	15957544	intron	beat-Ib -	chr2L_12_15955001	chr2L_15955001	D16-c3
494	chr2L	16071771	16071771	chr2L	16217659	16217660	copia	82	145889	31.0	35.0	33.0	2.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_82_16140001	chr2L_16140001	D16-c3
495	chr2L	16141142	16141194	chr2L	16146374	16146426	copia	35	5231	7.0	12.0	9.5	3.3	5284	chr2L	16141142	intergenic	not near genes	chr2L	16143784	intergenic	not near genes	chr2L	16146426	intergenic	not near genes	chr2L_35_16140001	chr2L_16140001	D16-c3
496	chr2L	16153709	16153749	chr2L	16160788	16160828	297	43	7079	27.0	20.0	23.5	1.8	7119	chr2L	16153709	intergenic	not near genes	chr2L	16157268	intergenic	not near genes	chr2L	16160828	intergenic	not near genes	chr2L_43_16155001	chr2L_16155001	D16-c3
500	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	52	145889	31.0	35.0	33.0	1.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_52_16140001	chr2L_16140001	D16-c3
503	chr2L	16280234	16280284	chr2L	16281430	16281480	1360	54	1195	14.5	16.0	15.2	3.3	1246	chr2L	16280234	intron	crp -	chr2L	16280857	intron	crp -	chr2L	16281480	intron	crp -	chr2L_54_16280001	chr2L_16280001	D16-c3
510	chr2L	16511945	16511970	chr2L	16519084	16519109	HMS-Beagle	5	7141	4.5	0.5	2.5	1.4	7164	chr2L	16511945	intron	CG5953 -	chr2L	16515527	intron	CG5953 -	chr2L	16519109	intron	CG5953 -	chr2L_5_16515001	chr2L_16515001	D16-c3
523	chr2L	16958089	16958131	chr2L	16962902	16962944	Doc	10	4813	4.0	3.0	3.5	2.2	4855	chr2L	16958089	intergenic	not near genes	chr2L	16960516	intergenic	not near genes	chr2L	16962944	intergenic	not near genes	chr2L_10_16960001	chr2L_16960001	D16-c3
534	chr2L	17167541	17167588	chr2L	17167807	17167854	pogo	9	266	5.0	5.5	5.2	1.5	313	chr2L	17167541	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167854	intron,intron	CG34106 +,beat-IIIa +	chr2L_9_17165001	chr2L_17165001	D16-c3
536	chr2L	17199140	17199177	chr2L	17200632	17200669	hobo	5	1492	4.5	2.0	3.2	1.2	1529	chr2L	17199140	intron	beat-IIIc -	chr2L	17199904	intron	beat-IIIc -	chr2L	17200669	intron	beat-IIIc -	chr2L_5_17195001	chr2L_17195001	D16-c3
538	chr2L	17273171	17273212	chr2L	17277979	17278020	F-element	24	4807	6.5	5.5	6.0	3.4	4849	chr2L	17273171	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17278020	intergenic	not near genes	chr2L_24_17275001	chr2L_17275001	D16-c3
544	chr2L	17432008	17432034	chr2L	17432140	17432166	1360	4	132	0.0	3.5	1.8	1.4	158	chr2L	17432008	intron	Dif -	chr2L	17432087	intron	Dif -	chr2L	17432166	intron	Dif -	chr2L_4_17430001	chr2L_17430001	D16-c3
546	chr2L	17687493	17687521	chr2L	17692263	17692291	F-element	7	4769	3.5	4.5	4.0	1.4	4798	chr2L	17687493	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692291	intron	CadN -	chr2L_7_17685001	chr2L_17685001	D16-c3
548	chr2L	17727850	17727871	chr2L	17729342	17729363	hobo	12	1492	5.5	7.0	6.2	1.7	1513	chr2L	17727850	intron	CadN -	chr2L	17728606	intron	CadN -	chr2L	17729363	intron	CadN -	chr2L_12_17725001	chr2L_17725001	D16-c3
551	chr2L	17819901	17819950	chr2L	17825129	17825178	copia	20	5228	4.0	8.5	6.2	2.8	5277	chr2L	17819901	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825178	intron	CadN2 -	chr2L_20_17820001	chr2L_17820001	D16-c3
553	chr2L	17911929	17911989	chr2L	17914140	17914200	pogo	16	2211	4.5	5.5	5.0	2.7	2271	chr2L	17911929	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914200	intergenic	CG43271 -	chr2L_16_17910001	chr2L_17910001	D16-c3
555	chr2L	17951926	17951977	chr2L	17953418	17953469	hobo	22	1491	6.5	4.0	5.2	3.5	1543	chr2L	17951926	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953469	intergenic	not near genes	chr2L_22_17950001	chr2L_17950001	D16-c3
563	chr2L	18051860	18051902	chr2L	18061032	18061074	roo	16	9172	8.5	6.5	7.5	1.9	9214	chr2L	18051860	intron	rdo +	chr2L	18056467	intron	rdo +	chr2L	18061074	intron	rdo +	chr2L_16_18055001	chr2L_18055001	D16-c3
573	chr2L	18408005	18408046	chr2L	18412814	18412855	Doc	12	4809	6.0	4.5	5.2	1.9	4850	chr2L	18408005	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412855	intergenic	not near genes	chr2L_12_18410001	chr2L_18410001	D16-c3
592	chr2L	19147347	19147399	chr2L	19154407	19154459	297	9	7060	1.5	4.5	3.0	2.2	7112	chr2L	19147347	intron	brat +	chr2L	19150903	intron	brat +	chr2L	19154459	intron	brat +	chr2L_9_19150001	chr2L_19150001	D16-c3
598	chr2L	19344997	19345039	chr2L	19357231	19357273	blood	14	12234	10.0	7.0	8.5	1.5	12276	chr2L	19344997	intron	dnt -	chr2L	19351135	intron	dnt -	chr2L	19357273	intron	dnt -	chr2L_14_19350001	chr2L_19350001	D16-c3
614	chr2L	19620074	19620128	chr2L	19621088	19621142	jockey	27	1014	5.5	10.0	7.8	3.1	1068	chr2L	19620074	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621142	intron	Lar +	chr2L_27_19620001	chr2L_19620001	D16-c3
615	chr2L	19652544	19652594	chr2L	19674005	19674055	opus	7	21461	4.0	3.0	3.5	1.6	21511	chr2L	19652544	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674055	intron	Lar +	chr2L_7_19660001	chr2L_19660001	D16-c3
617	chr2L	19703518	19703523	chr2L	19712679	19712684	roo	4	9161	20.5	8.5	14.5	0.3	9166	chr2L	19703518	intron	Lar +	chr2L	19708101	intron	Lar +	chr2L	19712684	intron	Lar +	chr2L_4_19705001	chr2L_19705001	D16-c3
618	chr2L	19703524	19703567	chr2L	19712677	19712728	roo	19	9159	7.0	8.5	7.8	2.2	9204	chr2L	19703524	intron	Lar +	chr2L	19708126	intron	Lar +	chr2L	19712728	intron	Lar +	chr2L_19_19705001	chr2L_19705001	D16-c3
619	chr2L	19737334	19737384	chr2L	19740828	19740878	1360	10	3492	9.5	15.5	12.5	0.7	3544	chr2L	19737334	intergenic	Nf-YB +	chr2L	19739106	intergenic	not near genes	chr2L	19740878	intergenic	not near genes	chr2L_10_19735001	chr2L_19735001	D16-c3
621	chr2L	19762784	19762835	chr2L	19763051	19763102	pogo	17	266	8.0	5.5	6.8	2.2	318	chr2L	19762784	exon	fbp -	chr2L	19762943	intron	fbp -	chr2L	19763102	intron	fbp -	chr2L_17_19760001	chr2L_19760001	D16-c3
630	chr2L	20005849	20005902	chr2L	20010950	20011002	flea	17	5101	7.5	5.5	6.5	2.3	5153	chr2L	20005849	intron	CG43861 -	chr2L	20008426	intron	CG43861 -	chr2L	20011002	intron	CG43861 -	chr2L_17_20005001	chr2L_20005001	D16-c3
634	chr2L	20272089	20272141	chr2L	20282825	20282877	copia	33	10736	6.5	6.0	6.2	4.6	10788	chr2L	20272089	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282877	intergenic	not near genes	chr2L_33_20275001	chr2L_20275001	D16-c3
639	chr2L	20372205	20372245	chr2L	20372471	20372511	pogo	13	266	0.5	7.0	3.8	2.7	306	chr2L	20372205	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372511	exon	Ugt37a1 -	chr2L_13_20370001	chr2L_20370001	D16-c3
643	chr2L	20568635	20568686	chr2L	20569050	20569099	X-element	19	415	5.5	4.0	4.8	3.3	464	chr2L	20568635	intron	CR45347 +	chr2L	20568867	intron	CR45347 +	chr2L	20569099	intron	CR45347 +	chr2L_19_20565001	chr2L_20565001	D16-c3
644	chr2L	20576229	20576245	chr2L	20583723	20583738	blood	10	7494	3.0	8.5	5.8	1.5	7509	chr2L	20576229	intergenic	not near genes	chr2L	20579984	intergenic	not near genes	chr2L	20583738	3` UTR	CR44909 -	chr2L_10_20575001	chr2L_20575001	D16-c3
648	chr2L	20639481	20639525	chr2L	20639782	20639826	INE-1	4	301	16.0	15.5	15.8	0.2	345	chr2L	20639481	intergenic	not near genes	chr2L	20639654	intergenic	CG31680 +	chr2L	20639826	intergenic	CG31680 +	chr2L_4_20635001	chr2L_20635001	D16-c3
658	chr2L	20835790	20835839	chr2L	20836528	20836581	Quasimodo	11	742	7.5	12.0	9.8	1.0	791	chr2L	20835790	5` UTR	Oseg5 -	chr2L	20836186	intergenic	Oseg5 -,Spn38F -	chr2L	20836581	intergenic	Spn38F -	chr2L_11_20835001	chr2L_20835001	D16-c3
660	chr2L	20891509	20891542	chr2L	20896635	20896668	jockey	11	5126	3.5	3.0	3.2	2.6	5159	chr2L	20891509	intron,intron	CG43739 -,sky -	chr2L	20894088	intron,intron	CG43739 -,sky -	chr2L	20896668	intron,intron	CG43739 -,sky -	chr2L_11_20890001	chr2L_20890001	D16-c3
661	chr2L	20901429	20901476	chr2L	20902618	20902664	1360	12	1188	14.5	1.5	8.0	1.3	1235	chr2L	20901429	intron,intron	CG43739 -,sky -	chr2L	20902046	intron,intron	CG43739 -,sky -	chr2L	20902664	intron,intron	CG43739 -,sky -	chr2L_12_20900001	chr2L_20900001	D16-c3
666	chr2L	20976627	20976666	chr2L	20981467	20981506	X-element	7	4840	6.0	7.0	6.5	0.9	4879	chr2L	20976627	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981506	intron	CG42238 -	chr2L_7_20975001	chr2L_20975001	D16-c3
669	chr2L	21020252	21020303	chr2L	21023954	21024005	NOF	19	3702	6.0	9.0	7.5	2.2	3753	chr2L	21020252	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21024005	intron	CG42238 -	chr2L_19_21020001	chr2L_21020001	D16-c3
670	chr2L	21041124	21041157	chr2L	21049408	21049443	Tirant	5	8286	5.0	3.0	4.0	1.0	8319	chr2L	21041124	intron	CG42238 -	chr2L	21045284	intron	CG42238 -	chr2L	21049443	intron	CG42238 -	chr2L_5_21045001	chr2L_21045001	D16-c3
677	chr2L	21347531	21347573	chr2L	21355028	21355070	blood	12	7497	4.0	1.5	2.8	3.2	7539	chr2L	21347531	intron	Tsp39D +	chr2L	21351300	intron	Tsp39D +	chr2L	21355070	intron	Tsp39D +	chr2L_12_21350001	chr2L_21350001	D16-c3
680	chr2L	21597027	21597059	chr2L	21604796	21604828	roo	8	7769	6.0	8.5	7.2	1.0	7801	chr2L	21597027	intergenic	not near genes	chr2L	21600928	intergenic	not near genes	chr2L	21604828	intergenic	not near genes	chr2L_8_21600001	chr2L_21600001	D16-c3
682	chr2L	21691802	21691834	chr2L	21698297	21698328	Burdock	13	6495	7.5	1.0	4.2	2.5	6526	chr2L	21691802	intron	CG31619 +	chr2L	21695065	intron	CG31619 +	chr2L	21698328	intron	CG31619 +	chr2L_13_21695001	chr2L_21695001	D16-c3
692	chr2L	21902493	21902506	chr2L	21902593	21902608	INE-1	7	102	4.0	8.5	6.2	1.0	115	chr2L	21902493	intergenic	CG1421 +	chr2L	21902550	intergenic	CG1421 +	chr2L	21902608	intergenic	CG1421 +	chr2L_7_21900001	chr2L_21900001	D16-c3
698	chr2L	21981661	21981708	chr2L	21990851	21990898	roo	20	9190	5.5	5.0	5.2	3.2	9237	chr2L	21981661	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990898	exon	CG2528 -	chr2L_20_21985001	chr2L_21985001	D16-c3
710	chr2L	22258601	22258644	chr2L	22260750	22260793	G6	23	2149	3.5	6.5	5.0	3.8	2192	chr2L	22258601	intergenic	Tif-IA +	chr2L	22259697	intergenic	not near genes	chr2L	22260793	intergenic	not near genes	chr2L_23_22255001	chr2L_22255001	D16-c3
712	chr2L	22341266	22341300	chr2L	22341486	22341520	G-element	13	219	35.0	27.5	31.2	0.4	254	chr2L	22341266	intron	CG17018 +	chr2L	22341393	intron	CG17018 +	chr2L	22341520	intron	CG17018 +	chr2L_13_22340001	chr2L_22340001	D16-c3
713	chr2L	22548922	22548935	chr2L	22550172	22550185	1360	5	1248	5.5	17.5	11.5	0.4	1263	chr2L	22548922	intergenic	CG17490 +	chr2L	22549554	intergenic	not near genes	chr2L	22550185	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	D16-c3
714	chr2L	22581946	22581994	chr2L	22583760	22583808	S-element	12	1814	1.0	3.0	2.0	4.0	1862	chr2L	22581946	intron	CG17494 +	chr2L	22582877	intron	CG17494 +	chr2L	22583808	intron	CG17494 +	chr2L_12_22580001	chr2L_22580001	D16-c3
715	chr2L	22679801	22679815	chr2L	22684598	22684612	F-element	6	4797	5.5	6.5	6.0	0.9	4811	chr2L	22679801	intron	CG40006 -	chr2L	22682206	intron	CG40006 -	chr2L	22684612	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	D16-c3
717	chr2L	22776405	22776452	chr2L	22778219	22778266	S-element	10	1814	4.0	3.0	3.5	2.2	1861	chr2L	22776405	intergenic	not near genes	chr2L	22777336	intergenic	not near genes	chr2L	22778266	intergenic	not near genes	chr2L_10_22775001	chr2L_22775001	D16-c3
721	chr2R	469951	469979	chr2R	473217	473245	F-element	7	3265	9.0	2.5	5.8	1.0	3294	chr2R	469951	intergenic	not near genes	chr2R	471598	intergenic	not near genes	chr2R	473245	intergenic	not near genes	chr2R_7_470001	chr2R_470001	D16-c3
722	chr2R	529321	529350	chr2R	537971	537992	Max-element	5	8648	3.5	9.0	6.2	0.7	8671	chr2R	529321	intron	CG40378 +	chr2R	533656	intron	CG40378 +	chr2R	537992	intron	CG40378 +	chr2R_5_530001	chr2R_530001	D16-c3
723	chr2R	552738	552768	chr2R	553981	554006	1360	4	1242	14.0	25.5	19.8	0.2	1268	chr2R	552738	intron	CG40378 +	chr2R	553372	intron	CG40378 +	chr2R	554006	intron	CG40378 +	chr2R_4_550001	chr2R_550001	D16-c3
725	chr2R	1082366	1082383	chr2R	1087164	1087184	Doc	8	4801	7.5	25.0	16.2	0.5	4818	chr2R	1082366	intron	rl +	chr2R	1084775	intron	rl +	chr2R	1087184	intron	rl +	chr2R_8_1080001	chr2R_1080001	D16-c3
727	chr2R	1516584	1516602	chr2R	1521335	1521355	1731	16	4753	23.0	23.0	23.0	0.7	4771	chr2R	1516584	exon	Maf1 -	chr2R	1518970	intron	Maf1 -	chr2R	1521355	5` UTR	Maf1 -	chr2R_16_1515001	chr2R_1515001	D16-c3
732	chr2R	2110481	2110502	chr2R	2118064	2118085	17.6	8	7583	25.0	9.5	17.2	0.4	7604	chr2R	2110481	intron	CG17684 -	chr2R	2114283	intron	CG17684 -	chr2R	2118085	intron	CG17684 -	chr2R_8_2110001	chr2R_2110001	D16-c3
733	chr2R	2498959	2499010	chr2R	2508131	2508182	roo	14	9172	3.5	2.0	2.8	3.7	9223	chr2R	2498959	intron	MFS17 -	chr2R	2503570	intron	MFS17 -	chr2R	2508182	intron	MFS17 -	chr2R_14_2500001	chr2R_2500001	D16-c3
735	chr2R	2875372	2875375	chr2R	2878912	2878914	HMS-Beagle	4	3540	17.5	17.5	17.5	0.2	3542	chr2R	2875372	intergenic	not near genes	chr2R	2877143	intergenic	not near genes	chr2R	2878914	intergenic	not near genes	chr2R_4_2875001	chr2R_2875001	D16-c3
739	chr2R	3144071	3144104	chr2R	3393371	3393406	Doc	6	249302	17.5	12.0	14.8	0.4	249335	chr2R	3144071	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393406	intergenic	not near genes	chr2R_6_3265001	chr2R_3265001	D16-c3
744	chr2R	4622932	4622969	chr2R	4624114	4624150	1360	8	1183	20.0	11.5	15.8	0.5	1218	chr2R	4622932	intergenic	CR44101 -	chr2R	4623541	intergenic	not near genes	chr2R	4624150	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	D16-c3
745	chr2R	4708881	4708884	chr2R	5258182	5258182	Rt1c	5	549300	39.5	32.0	35.8	0.1	549301	chr2R	4708881	intron	Nipped-B -	chr2R	4983532	intron	Ir41a +	chr2R	5258182	intergenic	not near genes	chr2R_5_4980001	chr2R_4980001	D16-c3
746	chr2R	4750331	4750372	chr2R	4751513	4751553	1360	5	1181	6.5	14.0	10.2	0.4	1222	chr2R	4750331	intron	conu +	chr2R	4750942	intron	conu +	chr2R	4751553	intron	conu +	chr2R_5_4750001	chr2R_4750001	D16-c3
749	chr2R	4838854	4838896	chr2R	4840399	4840444	transib2	16	1548	7.0	6.0	6.5	2.1	1590	chr2R	4838854	intergenic	not near genes	chr2R	4839649	intergenic	not near genes	chr2R	4840444	intergenic	not near genes	chr2R_16_4835001	chr2R_4835001	D16-c3
750	chr2R	4870723	4870736	chr2R	4871259	4871272	R1A1-element	6	536	24.5	27.0	25.8	0.2	549	chr2R	4870723	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871272	intergenic	not near genes	chr2R_6_4870001	chr2R_4870001	D16-c3
772	chr2R	5417971	5418024	chr2R	5420628	5420681	Burdock	11	2657	4.0	4.0	4.0	2.2	2710	chr2R	5417971	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420681	intron	laccase2 +	chr2R_11_5415001	chr2R_5415001	D16-c3
790	chr2R	5869258	5869300	chr2R	5874359	5874401	flea	16	5101	5.5	10.0	7.8	1.8	5143	chr2R	5869258	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874401	intergenic	not near genes	chr2R_16_5870001	chr2R_5870001	D16-c3
794	chr2R	5902137	5902190	chr2R	5909721	5909774	17.6	10	7584	3.0	2.5	2.8	2.6	7637	chr2R	5902137	intron	CG43366 +	chr2R	5905956	intron	CG43366 +	chr2R	5909774	intron	CG43366 +	chr2R_10_5905001	chr2R_5905001	D16-c3
798	chr2R	6096701	6096739	chr2R	6101924	6101962	BS	24	5222	15.5	11.0	13.2	1.7	5261	chr2R	6096701	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101962	intron	EcR -	chr2R_24_6095001	chr2R_6095001	D16-c3
805	chr2R	6494505	6494552	chr2R	6499292	6499339	F-element	19	4787	8.0	5.0	6.5	2.5	4834	chr2R	6494505	intergenic	not near genes	chr2R	6496922	intergenic	not near genes	chr2R	6499339	intergenic	not near genes	chr2R_19_6495001	chr2R_6495001	D16-c3
812	chr2R	6579749	6579802	chr2R	6584860	6584914	flea	18	5111	1.5	4.5	3.0	4.5	5165	chr2R	6579749	intron	jing +	chr2R	6582332	intron	jing +	chr2R	6584914	intron	jing +	chr2R_18_6580001	chr2R_6580001	D16-c3
822	chr2R	6952147	6952176	chr2R	6959752	6959781	opus	13	7605	4.5	2.5	3.5	2.9	7634	chr2R	6952147	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959781	intron,intron	mim -,CheB42c -	chr2R_13_6955001	chr2R_6955001	D16-c3
825	chr2R	7139945	7139951	chr2R	7141460	7141468	hopper2	5	1516	10.0	24.5	17.2	0.3	1523	chr2R	7139945	intergenic	not near genes	chr2R	7140706	intergenic	not near genes	chr2R	7141468	intergenic	not near genes	chr2R_5_7140001	chr2R_7140001	D16-c3
828	chr2R	7196550	7196589	chr2R	7201350	7201389	F-element	13	4800	6.0	2.5	4.2	2.5	4839	chr2R	7196550	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201389	intron	pk +	chr2R_13_7195001	chr2R_7195001	D16-c3
829	chr2R	7235796	7235847	chr2R	7240913	7240964	jockey	27	5117	6.5	5.5	6.0	3.9	5168	chr2R	7235796	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240964	intergenic	not near genes	chr2R_27_7235001	chr2R_7235001	D16-c3
831	chr2R	7262179	7262219	chr2R	7269259	7269289	297	7	7076	5.0	7.5	6.2	1.0	7110	chr2R	7262179	intergenic	not near genes	chr2R	7265734	intergenic	not near genes	chr2R	7269289	intergenic	not near genes	chr2R_7_7265001	chr2R_7265001	D16-c3
838	chr2R	7434878	7434910	chr2R	7439199	7439236	Juan	14	4325	6.0	8.5	7.2	1.7	4358	chr2R	7434878	intergenic	so +	chr2R	7437057	intergenic	not near genes	chr2R	7439236	intergenic	not near genes	chr2R_14_7435001	chr2R_7435001	D16-c3
840	chr2R	7608384	7608442	chr2R	7613612	7613669	I-element	8	5228	3.5	0.0	1.8	2.9	5285	chr2R	7608384	intron	CG1358 -	chr2R	7611026	intron	CG1358 -	chr2R	7613669	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	D16-c3
848	chr2R	7815648	7815699	chr2R	7822142	7822193	Burdock	20	6494	6.0	5.5	5.8	2.9	6545	chr2R	7815648	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822193	3` UTR	cathD -	chr2R_20_7815001	chr2R_7815001	D16-c3
851	chr2R	7862207	7862250	chr2R	7867345	7867388	flea	6	5138	17.0	4.5	10.8	0.5	5181	chr2R	7862207	intron	Dgk -	chr2R	7864798	intron	Dgk -	chr2R	7867388	intron	Dgk -	chr2R_6_7860001	chr2R_7860001	D16-c3
852	chr2R	7869173	7869199	chr2R	7873984	7874010	Doc	15	4809	10.5	9.0	9.8	1.4	4837	chr2R	7869173	intron	Dgk -	chr2R	7871592	intron	Dgk -	chr2R	7874010	intron	Dgk -	chr2R_15_7870001	chr2R_7870001	D16-c3
870	chr2R	8160910	8160948	chr2R	8161025	8161062	1360	12	115	34.5	32.5	33.5	0.3	152	chr2R	8160910	exon	CG8708 -	chr2R	8160986	intron	CG8708 -	chr2R	8161062	intron	CG8708 -	chr2R_12_8160001	chr2R_8160001	D16-c3
873	chr2R	8330835	8330889	chr2R	8331346	8331400	roo	17	511	8.0	5.5	6.8	2.2	565	chr2R	8330835	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331400	intron	pdm3 +	chr2R_17_8330001	chr2R_8330001	D16-c3
875	chr2R	8398188	8398241	chr2R	8402994	8403047	Doc	29	4806	10.0	8.5	9.2	2.8	4859	chr2R	8398188	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403047	intron	CG2121 -	chr2R_29_8400001	chr2R_8400001	D16-c3
876	chr2R	8416292	8416309	chr2R	8417141	8417158	I-element	10	849	10.5	11.0	10.8	0.8	866	chr2R	8416292	intergenic	not near genes	chr2R	8416725	intergenic	CG43296 -	chr2R	8417158	intergenic	CG43296 -	chr2R_10_8415001	chr2R_8415001	D16-c3
880	chr2R	8722738	8722792	chr2R	8723004	8723046	pogo	28	264	7.5	8.5	8.0	3.1	308	chr2R	8722738	intron	CG14767 -	chr2R	8722892	intron	CG14767 -	chr2R	8723046	intron	CG14767 -	chr2R_28_8720001	chr2R_8720001	D16-c3
883	chr2R	8777898	8777944	chr2R	8784127	8784173	diver	8	6229	3.0	8.0	5.5	1.2	6275	chr2R	8777898	intergenic	not near genes	chr2R	8781036	intergenic	not near genes	chr2R	8784173	intergenic	not near genes	chr2R_8_8780001	chr2R_8780001	D16-c3
894	chr2R	9151278	9151332	chr2R	9157772	9157827	Burdock	26	6495	9.0	4.5	6.8	3.3	6549	chr2R	9151278	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157827	intergenic	CG8008 -	chr2R_26_9150001	chr2R_9150001	D16-c3
896	chr2R	9212673	9212687	chr2R	9213184	9213198	roo	12	511	21.0	16.5	18.8	0.6	525	chr2R	9212673	intergenic	CR45309 +	chr2R	9212936	intergenic	CR45309 +	chr2R	9213198	5` UTR	CR45309 +	chr2R_12_9210001	chr2R_9210001	D16-c3
897	chr2R	9212688	9212716	chr2R	9213183	9213227	roo	12	510	14.0	16.0	15.0	0.8	539	chr2R	9212688	intergenic	CR45309 +	chr2R	9212958	intergenic	CR45309 +	chr2R	9213227	5` UTR	CR45309 +	chr2R_12_9210001	chr2R_9210001	D16-c3
903	chr2R	9480057	9480096	chr2R	9490613	9490652	roo	7	10556	2.0	7.0	4.5	1.3	10595	chr2R	9480057	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490652	intergenic	not near genes	chr2R_7_9485001	chr2R_9485001	D16-c3
911	chr2R	9726597	9726640	chr2R	9734173	9734216	17.6	5	7576	10.5	4.5	7.5	0.6	7619	chr2R	9726597	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734216	intron	sqa -	chr2R_5_9730001	chr2R_9730001	D16-c3
913	chr2R	9871024	9871073	chr2R	9871535	9871582	roo	21	511	4.5	8.5	6.5	2.8	558	chr2R	9871024	intron	cbx -	chr2R	9871303	intron	cbx -	chr2R	9871582	intron,5` UTR	cbx -,CG18446 +	chr2R_21_9870001	chr2R_9870001	D16-c3
914	chr2R	9945414	9945466	chr2R	9945635	9945687	BS	15	220	5.5	6.0	5.8	2.2	273	chr2R	9945414	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945687	intron	Mef2 -	chr2R_15_9945001	chr2R_9945001	D16-c3
918	chr2R	10005826	10005879	chr2R	10007016	10007057	1360	24	1188	5.5	8.0	6.8	3.1	1231	chr2R	10005826	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007057	intron	Pka-R2 -	chr2R_24_10005001	chr2R_10005001	D16-c3
928	chr2R	10176858	10176900	chr2R	10186050	10186092	roo	8	9192	1.5	4.0	2.8	2.1	9234	chr2R	10176858	intron	KCNQ -	chr2R	10181475	intron	KCNQ -	chr2R	10186092	intron	KCNQ -	chr2R_8_10180001	chr2R_10180001	D16-c3
948	chr2R	10585573	10585587	chr2R	10594181	10594195	Tirant	10	8608	6.0	14.5	10.2	0.9	8622	chr2R	10585573	intron	psq +	chr2R	10589884	intron	psq +	chr2R	10594195	intron	psq +	chr2R_10_10585001	chr2R_10585001	D16-c3
954	chr2R	10948021	10948058	chr2R	10955597	10955633	17.6	19	7575	0.5	11.0	5.8	2.8	7612	chr2R	10948021	intergenic	not near genes	chr2R	10951827	intergenic	not near genes	chr2R	10955633	intergenic	not near genes	chr2R_19_10950001	chr2R_10950001	D16-c3
957	chr2R	10979647	10979687	chr2R	10980134	10980179	297	8	490	3.5	6.0	4.8	1.4	532	chr2R	10979647	intergenic	not near genes	chr2R	10979913	intergenic	not near genes	chr2R	10980179	intergenic	not near genes	chr2R_8_10975001	chr2R_10975001	D16-c3
958	chr2R	11009796	11009846	chr2R	11018995	11019045	roo	20	9198	6.0	5.5	5.8	2.9	9249	chr2R	11009796	intron	luna -	chr2R	11014420	intron	luna -	chr2R	11019045	intron	luna -	chr2R_20_11010001	chr2R_11010001	D16-c3
959	chr2R	11019859	11019907	chr2R	11024950	11024983	jockey	32	5089	9.5	10.5	10.0	2.9	5124	chr2R	11019859	intron	luna -	chr2R	11022421	intron	luna -	chr2R	11024983	intron	luna -	chr2R_32_11020001	chr2R_11020001	D16-c3
960	chr2R	11101093	11101140	chr2R	17111990	17112036	HMS-Beagle	6	6010898	15.0	16.0	15.5	0.4	6010943	chr2R	11101093	intron	luna -	chr2R	14106564	intron	Prosap -	chr2R	17112036	intron	CG15611 +	chr2R_6_14105001	chr2R_14105001	D16-c3
961	chr2R	11134085	11134142	chr2R	11134351	11134408	pogo	15	265	5.5	1.5	3.5	3.3	323	chr2R	11134085	intergenic	not near genes	chr2R	11134246	intergenic	not near genes	chr2R	11134408	intergenic	not near genes	chr2R_15_11130001	chr2R_11130001	D16-c3
963	chr2R	11207791	11207845	chr2R	11208008	11208062	BS	20	217	7.0	4.5	5.8	2.9	271	chr2R	11207791	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208062	intron	shn +	chr2R_20_11205001	chr2R_11205001	D16-c3
967	chr2R	11297618	11297649	chr2R	11301964	11301995	flea	10	4346	5.5	0.0	2.8	2.6	4377	chr2R	11297618	intergenic	CG42336 -	chr2R	11299806	intergenic	not near genes	chr2R	11301995	5` UTR	CG7741 +	chr2R_10_11295001	chr2R_11295001	D16-c3
969	chr2R	11415497	11415549	chr2R	11418670	11418723	opus	24	3173	5.0	6.5	5.8	3.5	3226	chr2R	11415497	intron	Drip -	chr2R	11417110	intron	Drip -	chr2R	11418723	intron	Drip -	chr2R_24_11415001	chr2R_11415001	D16-c3
970	chr2R	11472624	11472679	chr2R	11473846	11473899	pogo	26	1222	9.5	7.0	8.2	2.8	1275	chr2R	11472624	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473899	intergenic	not near genes	chr2R_26_11470001	chr2R_11470001	D16-c3
990	chr2R	12481141	12481163	chr2R	12482963	12482992	roo	16	1827	10.5	11.5	11.0	1.3	1851	chr2R	12481141	exon	Dh44-R2 +	chr2R	12482066	intron	Dh44-R2 +	chr2R	12482992	intron	Dh44-R2 +	chr2R_16_12480001	chr2R_12480001	D16-c3
991	chr2R	12501666	12501721	chr2R	12503853	12503903	Rt1c	16	2186	7.5	8.0	7.8	1.8	2237	chr2R	12501666	intron	fdl -	chr2R	12502784	intron	fdl -	chr2R	12503903	intron	fdl -	chr2R_16_12500001	chr2R_12500001	D16-c3
1001	chr2R	12707511	12707548	chr2R	12715902	12715939	roo	17	8391	2.0	3.0	2.5	4.9	8428	chr2R	12707511	intron	CG42663 +	chr2R	12711725	intron	CG42663 +	chr2R	12715939	intron	CG42663 +	chr2R_17_12710001	chr2R_12710001	D16-c3
1003	chr2R	12789269	12789326	chr2R	12797656	12797714	roo	30	8388	3.5	5.5	4.5	5.5	8445	chr2R	12789269	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797714	intron,3` UTR	sca +,CR45137 -	chr2R_30_12790001	chr2R_12790001	D16-c3
1004	chr2R	12819436	12819459	chr2R	12824526	12824542	jockey	11	5088	7.0	8.0	7.5	1.3	5106	chr2R	12819436	intergenic	not near genes	chr2R	12821989	intergenic	not near genes	chr2R	12824542	intergenic	not near genes	chr2R_11_12820001	chr2R_12820001	D16-c3
1005	chr2R	12819460	12819479	chr2R	12824520	12824567	jockey	16	5085	4.0	7.5	5.8	2.4	5107	chr2R	12819460	intergenic	not near genes	chr2R	12822014	intergenic	not near genes	chr2R	12824567	intergenic	not near genes	chr2R_16_12820001	chr2R_12820001	D16-c3
1013	chr2R	13136822	13136845	chr2R	13141645	13141668	Doc	21	4823	19.0	13.0	16.0	1.2	4846	chr2R	13136822	exon	Cap-G +	chr2R	13139245	intron	Cap-G +	chr2R	13141668	intron	Cap-G +	chr2R_21_13135001	chr2R_13135001	D16-c3
1014	chr2R	13136847	13136862	chr2R	13141639	13141685	Doc	12	4820	9.0	12.0	10.5	1.0	4838	chr2R	13136847	exon	Cap-G +	chr2R	13139266	intron	Cap-G +	chr2R	13141685	intron	Cap-G +	chr2R_12_13135001	chr2R_13135001	D16-c3
1025	chr2R	13580478	13580528	chr2R	13580848	13580903	jockey	26	374	5.0	9.0	7.0	3.2	425	chr2R	13580478	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580903	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_26_13580001	chr2R_13580001	D16-c3
1033	chr2R	13728119	13728160	chr2R	13735801	13735842	opus	19	7682	4.0	5.0	4.5	3.5	7723	chr2R	13728119	intron	fas +	chr2R	13731980	intron	fas +	chr2R	13735842	intron	fas +	chr2R_19_13730001	chr2R_13730001	D16-c3
1037	chr2R	13905583	13905628	chr2R	13907590	13907634	Rt1a	26	2005	9.5	18.0	13.8	1.8	2051	chr2R	13905583	intron	shot -	chr2R	13906608	intron	shot -	chr2R	13907634	intron	shot -	chr2R_26_13905001	chr2R_13905001	D16-c3
1045	chr2R	14394212	14394220	chr2R	14399026	14399034	Doc	4	4814	7.0	4.0	5.5	0.6	4822	chr2R	14394212	intergenic	not near genes	chr2R	14396623	intergenic	not near genes	chr2R	14399034	intergenic	not near genes	chr2R_4_14395001	chr2R_14395001	D16-c3
1046	chr2R	14467284	14467326	chr2R	14476467	14476509	roo	20	9183	3.0	6.0	4.5	3.6	9225	chr2R	14467284	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476509	5` UTR	CR44462 +	chr2R_20_14470001	chr2R_14470001	D16-c3
1047	chr2R	14497365	14497378	chr2R	14498553	14498566	1360	5	1188	3.0	4.5	3.8	1.0	1201	chr2R	14497365	3` UTR	Cpsf160 -	chr2R	14497966	intron	Cpsf160 -	chr2R	14498566	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	D16-c3
1060	chr2R	14889188	14889203	chr2R	14897821	14897836	Max-element	8	8633	10.0	1.0	5.5	1.2	8648	chr2R	14889188	intergenic	Cyp6a8 -	chr2R	14893512	intergenic	not near genes	chr2R	14897836	intergenic	not near genes	chr2R_8_14890001	chr2R_14890001	D16-c3
1066	chr2R	15004703	15004751	chr2R	15005057	15005105	jockey	20	353	8.0	5.5	6.8	2.6	402	chr2R	15004703	intergenic	not near genes	chr2R	15004904	intergenic	not near genes	chr2R	15005105	intergenic	not near genes	chr2R_20_15000001	chr2R_15000001	D16-c3
1067	chr2R	15015438	15015485	chr2R	15022887	15022934	mdg1	14	7449	2.0	4.5	3.2	3.3	7496	chr2R	15015438	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022934	intron	hbs +	chr2R_14_15015001	chr2R_15015001	D16-c3
1070	chr2R	15119296	15119345	chr2R	15127802	15127851	Tirant	23	8505	9.0	0.0	4.5	4.2	8555	chr2R	15119296	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127851	intron	chn +	chr2R_23_15120001	chr2R_15120001	D16-c3
1100	chr2R	16539617	16539669	chr2R	16544851	16544903	copia	11	5234	5.0	3.0	4.0	2.2	5286	chr2R	16539617	intergenic	not near genes	chr2R	16542260	intergenic	not near genes	chr2R	16544903	intergenic	not near genes	chr2R_11_16540001	chr2R_16540001	D16-c3
1105	chr2R	11102117	11102158	chr2R	17108908	17108949	HMS-Beagle	6	6006791	30.0	30.0	30.0	0.2	6006832	chr2R	11102117	intron	luna -	chr2R	14105533	intron	Prosap -	chr2R	17108949	5` UTR	CG15611 +	chr2R_6_14105001	chr2R_14105001	D16-c3
1107	chr2R	17147221	17147267	chr2R	17152277	17152321	jockey	21	5055	5.0	8.0	6.5	2.8	5100	chr2R	17147221	intergenic	not near genes	chr2R	17149771	intergenic	not near genes	chr2R	17152321	intergenic	not near genes	chr2R_21_17145001	chr2R_17145001	D16-c3
1110	chr2R	17236483	17236530	chr2R	17241712	17241759	copia	12	5229	4.5	8.5	6.5	1.6	5276	chr2R	17236483	intron	mbl +	chr2R	17239121	intron	mbl +	chr2R	17241759	intron	mbl +	chr2R_12_17235001	chr2R_17235001	D16-c3
1111	chr2R	17277236	17277242	chr2R	17277669	17277675	jockey	4	433	9.0	13.5	11.2	0.3	439	chr2R	17277236	intron	mbl +	chr2R	17277456	intron	mbl +	chr2R	17277675	intron	mbl +	chr2R_4_17275001	chr2R_17275001	D16-c3
1113	chr2R	17485903	17485950	chr2R	17490698	17490743	F-element	10	4794	4.0	4.0	4.0	2.0	4840	chr2R	17485903	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488323	intron	NT5E-2 +	chr2R	17490743	intron	NT5E-2 +	chr2R_10_17485001	chr2R_17485001	D16-c3
1126	chr2R	18045648	18045698	chr2R	18046025	18046075	jockey	8	377	2.5	4.5	3.5	1.8	427	chr2R	18045648	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046075	intergenic	CG5767 -	chr2R_8_18045001	chr2R_18045001	D16-c3
1127	chr2R	18111673	18111712	chr2R	18115566	18115599	F-element	5	3892	4.0	3.5	3.8	1.0	3926	chr2R	18111673	intergenic	not near genes	chr2R	18113636	intergenic	not near genes	chr2R	18115599	intergenic	not near genes	chr2R_5_18110001	chr2R_18110001	D16-c3
1133	chr2R	18358369	18358418	chr2R	18372606	18372655	roo	18	14236	4.5	4.5	4.5	3.3	14286	chr2R	18358369	intergenic	not near genes	chr2R	18365512	intergenic	not near genes	chr2R	18372655	intergenic	not near genes	chr2R_18_18365001	chr2R_18365001	D16-c3
1138	chr2R	18487814	18487846	chr2R	18495290	18495341	blood	8	7478	1.5	3.0	2.2	2.5	7527	chr2R	18487814	intron	CG30116 -	chr2R	18491578	intron	CG30116 -	chr2R	18495341	intron	CG30116 -	chr2R_8_18490001	chr2R_18490001	D16-c3
1141	chr2R	18575771	18575825	chr2R	18581984	18582038	3S18	25	6203	8.5	5.5	7.0	3.1	6267	chr2R	18575771	intron	GEFmeso -	chr2R	18578904	intron	GEFmeso -	chr2R	18582038	intron	GEFmeso -	chr2R_25_18575001	chr2R_18575001	D16-c3
1142	chr2R	18590843	18590894	chr2R	18600020	18600071	roo	37	9176	8.0	8.5	8.2	4.0	9228	chr2R	18590843	intron	GEFmeso -	chr2R	18595457	intron	GEFmeso -	chr2R	18600071	intron	GEFmeso -	chr2R_37_18595001	chr2R_18595001	D16-c3
1169	chr2R	19715832	19715857	chr2R	19723326	19723351	blood	15	7493	18.5	10.5	14.5	1.0	7519	chr2R	19715832	intergenic	not near genes	chr2R	19719592	intergenic	not near genes	chr2R	19723351	intergenic	not near genes	chr2R_15_19715001	chr2R_19715001	D16-c3
1171	chr2R	19776571	19776623	chr2R	19779919	19779971	jockey	22	3348	3.0	4.5	3.8	4.6	3400	chr2R	19776571	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779971	intergenic	not near genes	chr2R_22_19775001	chr2R_19775001	D16-c3
1175	chr2R	19914823	19914872	chr2R	19922260	19922309	mdg1	17	7436	5.0	7.5	6.2	2.4	7486	chr2R	19914823	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922309	intergenic	not near genes	chr2R_17_19915001	chr2R_19915001	D16-c3
1178	chr2R	19957407	19957458	chr2R	19962634	19962685	copia	25	5225	9.0	6.5	7.8	2.8	5278	chr2R	19957407	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962685	intergenic	not near genes	chr2R_25_19960001	chr2R_19960001	D16-c3
1180	chr2R	20069223	20069272	chr2R	20071878	20071927	opus	14	2655	3.5	7.0	5.2	2.3	2704	chr2R	20069223	intergenic	not near genes	chr2R	20070575	intergenic	not near genes	chr2R	20071927	intergenic	not near genes	chr2R_14_20070001	chr2R_20070001	D16-c3
1181	chr2R	20088020	20088028	chr2R	20088153	20088161	1360	5	133	3.0	6.0	4.5	0.9	141	chr2R	20088020	intergenic	not near genes	chr2R	20088090	intergenic	not near genes	chr2R	20088161	intergenic	not near genes	chr2R_5_20085001	chr2R_20085001	D16-c3
1193	chr2R	20739421	20739473	chr2R	20744214	20744264	F-element	26	4793	9.0	9.5	9.2	2.5	4843	chr2R	20739421	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744264	intron	dpr +	chr2R_26_20740001	chr2R_20740001	D16-c3
1195	chr2R	20783292	20783332	chr2R	20788089	20788129	F-element	17	4797	1.0	5.5	3.2	4.0	4837	chr2R	20783292	intergenic	not near genes	chr2R	20785710	intergenic	not near genes	chr2R	20788129	intergenic	CG43666 -	chr2R_17_20785001	chr2R_20785001	D16-c3
1200	chr2R	21151094	21151145	chr2R	21153752	21153803	opus	22	2658	10.5	3.5	7.0	2.8	2709	chr2R	21151094	intron	CG30389 -	chr2R	21152448	intron	CG30389 -	chr2R	21153803	intron	CG30389 -	chr2R_22_21150001	chr2R_21150001	D16-c3
1214	chr2R	21738254	21738311	chr2R	21747439	21747478	roo	16	9183	2.5	4.0	3.2	3.8	9224	chr2R	21738254	intergenic	not near genes	chr2R	21742866	intergenic	not near genes	chr2R	21747478	intergenic	not near genes	chr2R_16_21740001	chr2R_21740001	D16-c3
1215	chr2R	21753061	21753109	chr2R	21753571	21753619	roo	7	510	2.5	4.5	3.5	1.6	558	chr2R	21753061	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753619	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	D16-c3
1217	chr2R	21809503	21809543	chr2R	21817768	21817808	roo	13	8265	8.5	4.0	6.2	1.8	8305	chr2R	21809503	intergenic	not near genes	chr2R	21813656	intergenic	not near genes	chr2R	21817808	intergenic	not near genes	chr2R_13_21810001	chr2R_21810001	D16-c3
1238	chr2R	22349671	22349716	chr2R	22351480	22351525	jockey	20	1809	8.5	6.5	7.5	2.4	1854	chr2R	22349671	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351525	intron	Liprin-gamma -	chr2R_20_22350001	chr2R_22350001	D16-c3
1244	chr2R	22525733	22525777	chr2R	22529313	22529353	jockey	18	3579	7.0	6.0	6.5	2.4	3620	chr2R	22525733	intron	px -	chr2R	22527543	intron	px -	chr2R	22529353	intron	px -	chr2R_18_22525001	chr2R_22525001	D16-c3
1246	chr2R	22580415	22580445	chr2R	22586584	22586614	diver	7	6169	8.0	3.5	5.8	1.0	6199	chr2R	22580415	intron	dnr1 -	chr2R	22583514	intron	dnr1 -	chr2R	22586614	intron	dnr1 -	chr2R_7_22580001	chr2R_22580001	D16-c3
1251	chr2R	22774943	22774992	chr2R	22775386	22775436	jockey	15	444	6.0	5.5	5.8	2.2	493	chr2R	22774943	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775436	intron	CG42260 -	chr2R_15_22775001	chr2R_22775001	D16-c3
1253	chr2R	22843043	22843046	chr2R	22845034	22845037	flea	6	1991	4.5	9.5	7.0	0.8	1994	chr2R	22843043	intergenic	CG9826 +	chr2R	22844040	intergenic	not near genes	chr2R	22845037	intergenic	not near genes	chr2R_6_22840001	chr2R_22840001	D16-c3
1273	chr2R	23529551	23529606	chr2R	23537150	23537207	412	36	7599	7.0	14.5	10.8	3.1	7656	chr2R	23529551	intron	bw -	chr2R	23533379	intron	bw -	chr2R	23537207	exon	bw -	chr2R_36_23530001	chr2R_23530001	D16-c3
1285	chr2R	23877738	23877753	chr2R	23878234	23878249	297	4	496	5.5	6.0	5.8	0.6	511	chr2R	23877738	intergenic	ken +,TM4SF +	chr2R	23877994	intergenic	TM4SF +	chr2R	23878249	5` UTR	TM4SF +	chr2R_4_23875001	chr2R_23875001	D16-c3
1286	chr2R	23914288	23914330	chr2R	23921937	23921978	412	40	7648	10.5	14.5	12.5	3.0	7690	chr2R	23914288	exon	kcc +	chr2R	23918133	intron	kcc +	chr2R	23921978	exon	kcc +	chr2R_40_23915001	chr2R_23915001	D16-c3
1290	chr2R	24147044	24147096	chr2R	24154644	24154699	412	26	7601	11.0	9.0	10.0	2.4	7655	chr2R	24147044	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154699	intron	Dat +	chr2R_26_24150001	chr2R_24150001	D16-c3
1291	chr2R	24177211	24177266	chr2R	24184721	24184773	412	11	7510	4.5	4.5	4.5	2.0	7562	chr2R	24177211	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184773	3` UTR	Nop60B +	chr2R_11_24180001	chr2R_24180001	D16-c3
1292	chr2R	24272801	24272812	chr2R	24272904	24272915	roo	6	103	17.5	24.0	20.8	0.3	114	chr2R	24272801	intergenic	not near genes	chr2R	24272858	intergenic	not near genes	chr2R	24272915	intergenic	not near genes	chr2R_6_24270001	chr2R_24270001	D16-c3
1299	chr2R	24647567	24647609	chr2R	24655149	24655189	412	17	7581	4.5	7.5	6.0	2.4	7622	chr2R	24647567	intergenic	not near genes	chr2R	24651378	intergenic	not near genes	chr2R	24655189	intergenic	not near genes	chr2R_17_24650001	chr2R_24650001	D16-c3
1300	chr2R	24727865	24727915	chr2R	24735398	24735448	mdg1	21	7533	8.5	7.5	8.0	2.3	7583	chr2R	24727865	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735448	intron	Mid1 -	chr2R_21_24730001	chr2R_24730001	D16-c3
1302	chr2R	24763590	24763601	chr2R	24765591	24765602	G2	6	2001	28.0	17.0	22.5	0.3	2012	chr2R	24763590	exon	CG3894 +	chr2R	24764596	intron	CG3894 +	chr2R	24765602	exon	CG3894 +	chr2R_6_24760001	chr2R_24760001	D16-c3
1303	chr2R	24763604	24763640	chr2R	24765587	24765641	G2	37	2000	12.5	15.0	13.8	2.5	2037	chr2R	24763604	exon	CG3894 +	chr2R	24764622	intron	CG3894 +	chr2R	24765641	exon	CG3894 +	chr2R_37_24760001	chr2R_24760001	D16-c3
1311	chr2R	25141635	25141674	chr2R	25159345	25159389	roo	4	17714	3.0	3.0	3.0	1.0	17754	chr2R	25141635	intergenic	not near genes	chr2R	25150512	intergenic	not near genes	chr2R	25159389	intergenic	not near genes	chr2R_4_25150001	chr2R_25150001	D16-c3
1319	chr3L	110200	110239	chr3L	119390	119431	roo	19	9192	5.5	7.5	6.5	2.5	9231	chr3L	110200	intergenic	not near genes	chr3L	114816	intergenic	not near genes	chr3L	119431	intergenic	not near genes	chr3L_19_110001	chr3L_110001	D16-c3
1323	chr3L	402665	402716	chr3L	409743	409794	297	46	7077	10.0	16.0	13.0	3.3	7129	chr3L	402665	intergenic	not near genes	chr3L	406230	intergenic	not near genes	chr3L	409794	intergenic	not near genes	chr3L_46_405001	chr3L_405001	D16-c3
1333	chr3L	789889	789942	chr3L	790399	790452	roo	17	510	2.0	3.0	2.5	4.9	563	chr3L	789889	intergenic	not near genes	chr3L	790170	intergenic	not near genes	chr3L	790452	intergenic	not near genes	chr3L_17_790001	chr3L_790001	D16-c3
1334	chr3L	857974	858018	chr3L	866480	866524	Tirant	37	8505	16.5	11.5	14.0	2.5	8550	chr3L	857974	intergenic	not near genes	chr3L	862249	intergenic	not near genes	chr3L	866524	5` UTR	CG12502 +	chr3L_37_860001	chr3L_860001	D16-c3
1336	chr3L	925158	925205	chr3L	932609	932656	mdg1	17	7451	5.0	8.5	6.8	2.2	7498	chr3L	925158	intron	Glut1 +	chr3L	928907	intron	Glut1 +	chr3L	932656	intron	Glut1 +	chr3L_17_925001	chr3L_925001	D16-c3
1338	chr3L	939755	939797	chr3L	940900	940943	jockey	17	1146	10.5	11.0	10.8	1.4	1188	chr3L	939755	intron	Glut1 +	chr3L	940349	intron	Glut1 +	chr3L	940943	intron	Glut1 +	chr3L_17_940001	chr3L_940001	D16-c3
1344	chr3L	1047331	1047385	chr3L	1055164	1055222	412	25	7820	1.5	4.0	2.8	6.6	7891	chr3L	1047331	intron	bab1 -	chr3L	1051276	intron	bab1 -	chr3L	1055222	intron	bab1 -	chr3L_25_1050001	chr3L_1050001	D16-c3
1348	chr3L	1154118	1154159	chr3L	1163293	1163334	roo	13	9175	8.0	7.0	7.5	1.5	9216	chr3L	1154118	intron	bab2 -	chr3L	1158726	intron	bab2 -	chr3L	1163334	intron	bab2 -	chr3L_13_1155001	chr3L_1155001	D16-c3
1349	chr3L	1219569	1219622	chr3L	1227327	1227380	412	27	7757	13.0	7.0	10.0	2.5	7811	chr3L	1219569	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227380	intron	mwh +	chr3L_27_1220001	chr3L_1220001	D16-c3
1358	chr3L	1424750	1424773	chr3L	1430022	1430048	Rt1a	19	5274	1.0	17.0	9.0	1.9	5298	chr3L	1424750	intron	Ptp61F -	chr3L	1427399	intron	Ptp61F -	chr3L	1430048	intron	Ptp61F -	chr3L_19_1425001	chr3L_1425001	D16-c3
1360	chr3L	1485723	1485730	chr3L	1486913	1486922	1360	5	1191	18.5	25.0	21.8	0.2	1199	chr3L	1485723	intron	stet -	chr3L	1486322	intron	stet -	chr3L	1486922	intron	stet -	chr3L_5_1485001	chr3L_1485001	D16-c3
1361	chr3L	1485731	1485742	chr3L	1486909	1486934	1360	12	1190	12.0	23.0	17.5	0.6	1203	chr3L	1485731	intron	stet -	chr3L	1486332	intron	stet -	chr3L	1486934	intron	stet -	chr3L_12_1485001	chr3L_1485001	D16-c3
1363	chr3L	1505975	1506030	chr3L	1513597	1513652	17.6	47	7622	11.0	8.5	9.8	4.4	7677	chr3L	1505975	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513652	intron,intron	Psa +,cue -	chr3L_47_1505001	chr3L_1505001	D16-c3
1369	chr3L	1740833	1740874	chr3L	1741101	1741142	pogo	9	268	6.0	11.5	8.8	0.9	309	chr3L	1740833	intron	Gk +	chr3L	1740988	intron	Gk +	chr3L	1741142	intron	Gk +	chr3L_9_1740001	chr3L_1740001	D16-c3
1378	chr3L	2108226	2108282	chr3L	2113455	2113509	copia	7	5229	1.5	3.5	2.5	2.0	5283	chr3L	2108226	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113509	intron	sls -	chr3L_7_2110001	chr3L_2110001	D16-c3
1393	chr3L	2447480	2447532	chr3L	2456661	2456713	roo	31	9181	8.0	7.5	7.8	3.5	9233	chr3L	2447480	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456713	intron	CG45186 +	chr3L_31_2450001	chr3L_2450001	D16-c3
1404	chr3L	2927827	2927862	chr3L	2936129	2936164	Tirant	9	8302	4.5	5.0	4.8	1.6	8337	chr3L	2927827	intron	Shab +	chr3L	2931996	intron	Shab +	chr3L	2936164	intron	Shab +	chr3L_9_2930001	chr3L_2930001	D16-c3
1407	chr3L	3040299	3040352	chr3L	3042113	3042166	S-element	12	1813	3.5	4.5	4.0	2.4	1867	chr3L	3040299	3` UTR	CG2162 +	chr3L	3041232	intergenic	not near genes	chr3L	3042166	intergenic	Jafrac2 +	chr3L_12_3040001	chr3L_3040001	D16-c3
1409	chr3L	3051722	3051744	chr3L	3051989	3052011	pogo	18	266	17.0	7.0	12.0	1.4	289	chr3L	3051722	3` UTR	CG32485 +	chr3L	3051866	intergenic	CG32485 +	chr3L	3052011	intergenic	CG32485 +	chr3L_18_3050001	chr3L_3050001	D16-c3
1410	chr3L	3061261	3061315	chr3L	3069869	3069923	Tirant	35	8608	8.0	9.0	8.5	3.7	8662	chr3L	3061261	intron	CG32486 -	chr3L	3065592	intron	CG32486 -	chr3L	3069923	intron	CG32486 -	chr3L_35_3065001	chr3L_3065001	D16-c3
1414	chr3L	3281417	3281468	chr3L	3281938	3281989	Doc	31	521	7.5	10.0	8.8	3.2	572	chr3L	3281417	intron	CG12017 +	chr3L	3281703	intron	CG12017 +	chr3L	3281989	intron	CG12017 +	chr3L_31_3280001	chr3L_3280001	D16-c3
1421	chr3L	3475048	3475095	chr3L	3475518	3475564	jockey	14	469	7.5	9.5	8.5	1.5	516	chr3L	3475048	intron	CG42324 +	chr3L	3475306	intron	CG42324 +	chr3L	3475564	intron	CG42324 +	chr3L_14_3475001	chr3L_3475001	D16-c3
1429	chr3L	3601281	3601326	chr3L	3606617	3606662	copia	8	5335	4.0	4.5	4.2	1.5	5381	chr3L	3601281	intron	Eip63E +	chr3L	3603972	intron	Eip63E +	chr3L	3606662	intron	Eip63E +	chr3L_8_3600001	chr3L_3600001	D16-c3
1437	chr3L	3833713	3833768	chr3L	3833979	3834034	pogo	13	266	4.0	4.5	4.2	2.5	321	chr3L	3833713	intron	enc +	chr3L	3833874	intron	enc +	chr3L	3834034	intron	enc +	chr3L_13_3830001	chr3L_3830001	D16-c3
1442	chr3L	4328759	4328762	chr3L	4336280	4336281	412	4	7522	4.5	7.5	6.0	0.6	7522	chr3L	4328759	intron	Cip4 -	chr3L	4332520	intron	Cip4 -	chr3L	4336281	exon	Cip4 -	chr3L_4_4330001	chr3L_4330001	D16-c3
1450	chr3L	4901105	4901158	chr3L	4907320	4907373	diver	7	6212	6.0	6.5	6.2	1.0	6268	chr3L	4901105	intergenic	CG13704 +	chr3L	4904239	intergenic	not near genes	chr3L	4907373	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	D16-c3
1452	chr3L	5045434	5045479	chr3L	5050240	5050285	Doc	5	4805	7.0	4.0	5.5	0.8	4851	chr3L	5045434	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050285	intron	Con -	chr3L_5_5045001	chr3L_5045001	D16-c3
1463	chr3L	5537697	5537736	chr3L	5538064	5538101	jockey	12	367	4.5	3.0	3.8	2.5	404	chr3L	5537697	intergenic	not near genes	chr3L	5537899	intergenic	not near genes	chr3L	5538101	intergenic	CG10625 -	chr3L_12_5535001	chr3L_5535001	D16-c3
1469	chr3L	5910006	5910033	chr3L	5910272	5910299	pogo	20	266	16.0	0.0	8.0	2.2	293	chr3L	5910006	intron	CG13288 +	chr3L	5910152	intron	CG13288 +	chr3L	5910299	intron	CG13288 +	chr3L_20_5910001	chr3L_5910001	D16-c3
1472	chr3L	5926296	5926345	chr3L	5926511	5926560	BS	19	214	7.0	8.5	7.8	2.2	264	chr3L	5926296	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926560	intron	Vap-33B +	chr3L_19_5925001	chr3L_5925001	D16-c3
1475	chr3L	6001661	6001712	chr3L	6004386	6004437	jockey	12	2724	6.0	1.5	3.8	2.5	2776	chr3L	6001661	intron	PVRAP +	chr3L	6003049	intron	PVRAP +	chr3L	6004437	intron	PVRAP +	chr3L_12_6000001	chr3L_6000001	D16-c3
1477	chr3L	6040357	6040394	chr3L	6042735	6042775	Doc	9	2380	0.0	4.5	2.2	2.8	2418	chr3L	6040357	intergenic	Jon65Aiv +	chr3L	6041566	intergenic	not near genes	chr3L	6042775	intergenic	not near genes	chr3L_9_6040001	chr3L_6040001	D16-c3
1480	chr3L	6220889	6220943	chr3L	6230066	6230120	roo	16	9176	4.5	7.0	5.8	2.4	9231	chr3L	6220889	5` UTR	pncr008:3L +	chr3L	6225504	intergenic	not near genes	chr3L	6230120	intergenic	not near genes	chr3L_16_6225001	chr3L_6225001	D16-c3
1482	chr3L	6334985	6335040	chr3L	6335479	6335535	297	17	495	4.5	6.5	5.5	2.6	550	chr3L	6334985	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335535	intron	CG13300 -	chr3L_17_6335001	chr3L_6335001	D16-c3
1484	chr3L	6405649	6405683	chr3L	6432138	6432172	roo	9	26489	8.5	8.5	8.5	0.9	26523	chr3L	6405649	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432172	intron	CG42747 +	chr3L_9_6415001	chr3L_6415001	D16-c3
1487	chr3L	6620587	6620604	chr3L	6621052	6621069	Rt1c	12	464	7.0	21.0	14.0	0.8	482	chr3L	6620587	intergenic	not near genes	chr3L	6620828	intergenic	not near genes	chr3L	6621069	intergenic	not near genes	chr3L_12_6620001	chr3L_6620001	D16-c3
1493	chr3L	6781104	6781146	chr3L	6783142	6783181	Doc	7	2038	7.0	0.0	3.5	1.6	2077	chr3L	6781104	intergenic	not near genes	chr3L	6782142	intergenic	not near genes	chr3L	6783181	intergenic	not near genes	chr3L_7_6780001	chr3L_6780001	D16-c3
1496	chr3L	6855906	6855954	chr3L	6860715	6860763	Doc	14	4809	7.0	6.0	6.5	1.9	4857	chr3L	6855906	intergenic	not near genes	chr3L	6858334	intergenic	not near genes	chr3L	6860763	intergenic	not near genes	chr3L_14_6855001	chr3L_6855001	D16-c3
1497	chr3L	6887497	6887539	chr3L	6895014	6895056	roo	11	7517	5.0	0.0	2.5	3.1	7559	chr3L	6887497	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895056	intergenic	not near genes	chr3L_11_6890001	chr3L_6890001	D16-c3
1501	chr3L	6994871	6994913	chr3L	6995507	6995549	BS	5	636	2.0	4.5	3.2	1.2	678	chr3L	6994871	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995549	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	D16-c3
1519	chr3L	7377291	7377310	chr3L	7380421	7380440	297	9	3130	5.0	0.0	2.5	2.6	3149	chr3L	7377291	intron	SMSr -	chr3L	7378866	intron	SMSr -	chr3L	7380440	intron	SMSr -	chr3L_9_7375001	chr3L_7375001	D16-c3
1521	chr3L	7498740	7498783	chr3L	7503542	7503574	F-element	15	4800	6.0	5.0	5.5	2.3	4834	chr3L	7498740	5` UTR	CG8539 -	chr3L	7501157	intergenic	not near genes	chr3L	7503574	intergenic	not near genes	chr3L_15_7500001	chr3L_7500001	D16-c3
1530	chr3L	7793693	7793741	chr3L	7800770	7800818	297	17	7077	6.5	5.0	5.8	2.5	7125	chr3L	7793693	intron	CG32369 -	chr3L	7797256	intron	CG32369 -	chr3L	7800818	intron	CG32369 -	chr3L_17_7795001	chr3L_7795001	D16-c3
1536	chr3L	7886497	7886544	chr3L	7889046	7889087	Stalker4	9	2544	0.0	5.0	2.5	2.6	2590	chr3L	7886497	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889087	intron	CG32365 +	chr3L_9_7885001	chr3L_7885001	D16-c3
1537	chr3L	7916809	7916858	chr3L	7926005	7926054	roo	5	9196	4.0	3.5	3.8	1.0	9245	chr3L	7916809	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926054	3` UTR	syd -	chr3L_5_7920001	chr3L_7920001	D16-c3
1538	chr3L	7985343	7985389	chr3L	7987695	7987742	NOF	19	2353	5.5	5.0	5.2	3.1	2399	chr3L	7985343	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987742	intron	nmo +	chr3L_19_7985001	chr3L_7985001	D16-c3
1541	chr3L	8481748	8481799	chr3L	8490929	8490983	roo	21	9183	8.5	8.5	8.5	2.2	9235	chr3L	8481748	intron	CG43163 -	chr3L	8486366	intron	CG43163 -	chr3L	8490983	intron	CG43163 -	chr3L_21_8485001	chr3L_8485001	D16-c3
1542	chr3L	8498281	8498323	chr3L	8505773	8505815	blood	10	7491	5.5	4.5	5.0	1.7	7534	chr3L	8498281	intron	CG43163 -	chr3L	8502048	intron	CG43163 -	chr3L	8505815	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	D16-c3
1547	chr3L	8791254	8791308	chr3L	8796699	8796752	I-element	14	5445	8.5	0.0	4.2	2.7	5498	chr3L	8791254	exon	Fhos +	chr3L	8794003	intron	Fhos +	chr3L	8796752	intron	Fhos +	chr3L_14_8790001	chr3L_8790001	D16-c3
1556	chr3L	9076902	9076947	chr3L	9084487	9084532	412	23	7584	11.5	10.0	10.8	1.9	7630	chr3L	9076902	exon	Tequila +	chr3L	9080717	intron	Tequila +	chr3L	9084532	exon	Tequila +	chr3L_23_9080001	chr3L_9080001	D16-c3
1559	chr3L	9130536	9130582	chr3L	9134322	9134368	412	14	3786	5.5	5.0	5.2	2.3	3832	chr3L	9130536	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134368	intergenic	Dhpr +	chr3L_14_9130001	chr3L_9130001	D16-c3
1560	chr3L	9164684	9164701	chr3L	9166176	9166191	hobo	7	1492	4.0	0.0	2.0	2.3	1507	chr3L	9164684	intron	Rdl -	chr3L	9165438	intron	Rdl -	chr3L	9166191	intron	Rdl -	chr3L_7_9165001	chr3L_9165001	D16-c3
1561	chr3L	9219223	9219268	chr3L	9219920	9219965	jockey	17	697	10.5	15.5	13.0	1.2	742	chr3L	9219223	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219965	intergenic	not near genes	chr3L_17_9215001	chr3L_9215001	D16-c3
1563	chr3L	9270592	9270647	chr3L	9278372	9278402	roo	23	7778	8.5	9.5	9.0	2.3	7810	chr3L	9270592	intron	GluRIB +	chr3L	9274497	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_23_9270001	chr3L_9270001	D16-c3
1570	chr3L	9392446	9392451	chr3L	9395292	9395297	Doc	5	2846	7.5	3.0	5.2	0.8	2851	chr3L	9392446	intron	CG4080 -	chr3L	9393872	intron	CG4080 -	chr3L	9395297	intron	CG4080 -	chr3L_5_9390001	chr3L_9390001	D16-c3
1571	chr3L	9443491	9443512	chr3L	9445307	9445328	S-element	6	1816	5.5	0.5	3.0	1.5	1837	chr3L	9443491	intron	CG33926 +	chr3L	9444410	intron	CG33926 +	chr3L	9445328	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	D16-c3
1572	chr3L	9526470	9526510	chr3L	9528175	9528215	Doc	4	1705	2.0	4.0	3.0	1.0	1745	chr3L	9526470	intergenic	not near genes	chr3L	9527342	intergenic	not near genes	chr3L	9528215	intergenic	not near genes	chr3L_4_9525001	chr3L_9525001	D16-c3
1582	chr3L	9929669	9929699	chr3L	9938475	9938505	roo	5	8805	3.0	5.0	4.0	1.0	8836	chr3L	9929669	intron	CG34356 +	chr3L	9934087	intron	CG34356 +	chr3L	9938505	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	D16-c3
1595	chr3L	10414929	10414969	chr3L	10417326	10417366	Doc	17	2396	3.5	7.5	5.5	2.6	2437	chr3L	10414929	intergenic	CG12362 +	chr3L	10416148	intergenic	not near genes	chr3L	10417366	intergenic	not near genes	chr3L_17_10415001	chr3L_10415001	D16-c3
1614	chr3L	11264442	11264492	chr3L	11271419	11271469	17.6	25	6976	7.0	6.5	6.8	3.2	7027	chr3L	11264442	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271469	intergenic	not near genes	chr3L_25_11265001	chr3L_11265001	D16-c3
1628	chr3L	11723066	11723115	chr3L	11727886	11727935	Doc	9	4820	5.0	5.5	5.2	1.5	4869	chr3L	11723066	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727935	3` UTR	Bmcp +	chr3L_9_11725001	chr3L_11725001	D16-c3
1665	chr3L	12874904	12874956	chr3L	12877221	12877273	jockey	15	2317	7.0	3.0	5.0	2.5	2369	chr3L	12874904	intergenic	not near genes	chr3L	12876088	intergenic	not near genes	chr3L	12877273	intergenic	not near genes	chr3L_15_12875001	chr3L_12875001	D16-c3
1667	chr3L	12919260	12919280	chr3L	12924752	12924778	Rt1c	16	5497	14.5	10.0	12.2	1.2	5518	chr3L	12919260	intergenic	not near genes	chr3L	12922019	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_16_12920001	chr3L_12920001	D16-c3
1669	chr3L	12957769	12957814	chr3L	12962276	12962320	copia	15	4507	5.0	8.0	6.5	2.0	4551	chr3L	12957769	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962320	intergenic	not near genes	chr3L_15_12960001	chr3L_12960001	D16-c3
1687	chr3L	13525141	13525174	chr3L	13532962	13532995	roo	8	7821	6.0	8.5	7.2	1.0	7854	chr3L	13525141	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532995	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	D16-c3
1690	chr3L	13574605	13574619	chr3L	13580139	13580151	Rt1c	19	5535	17.5	12.0	14.8	1.2	5546	chr3L	13574605	intron	bru-3 -	chr3L	13577378	intron	bru-3 -	chr3L	13580151	intron	bru-3 -	chr3L_19_13575001	chr3L_13575001	D16-c3
1693	chr3L	13804529	13804566	chr3L	13822840	13822874	roo	8	18310	6.5	6.0	6.2	1.1	18345	chr3L	13804529	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822874	intergenic	not near genes	chr3L_8_13810001	chr3L_13810001	D16-c3
1705	chr3L	14245546	14245594	chr3L	14245665	14245713	1360	23	119	11.0	5.0	8.0	2.6	167	chr3L	14245546	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245713	intergenic	CR44561 -,CR44560 +	chr3L_23_14245001	chr3L_14245001	D16-c3
1706	chr3L	14267386	14267399	chr3L	14271823	14271836	F-element	4	4437	2.5	0.0	1.2	1.8	4450	chr3L	14267386	intergenic	not near genes	chr3L	14269611	intergenic	not near genes	chr3L	14271836	intergenic	not near genes	chr3L_4_14265001	chr3L_14265001	D16-c3
1710	chr3L	14295955	14296015	chr3L	14296466	14296526	roo	27	510	11.5	11.0	11.2	2.2	571	chr3L	14295955	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296526	intron	fz +	chr3L_27_14295001	chr3L_14295001	D16-c3
1711	chr3L	14312005	14312008	chr3L	14316840	14316844	X-element	4	4837	14.5	6.0	10.2	0.4	4839	chr3L	14312005	exon	fz +	chr3L	14314424	intron	fz +	chr3L	14316844	intron	fz +	chr3L_4_14310001	chr3L_14310001	D16-c3
1712	chr3L	14312011	14312045	chr3L	14316838	14316884	X-element	23	4837	6.5	6.0	6.2	3.2	4873	chr3L	14312011	exon	fz +	chr3L	14314448	intron	fz +	chr3L	14316884	intron	fz +	chr3L_23_14310001	chr3L_14310001	D16-c3
1718	chr3L	14468426	14468477	chr3L	14473657	14473708	copia	6	5231	2.0	7.0	4.5	1.1	5282	chr3L	14468426	intron	bbg -	chr3L	14471067	intron	bbg -	chr3L	14473708	intron	bbg -	chr3L_6_14470001	chr3L_14470001	D16-c3
1725	chr3L	14721163	14721201	chr3L	14723031	14723065	Rt1c	22	1867	13.0	7.5	10.2	2.0	1902	chr3L	14721163	intron	ome +	chr3L	14722114	intron	ome +	chr3L	14723065	intron	ome +	chr3L_22_14720001	chr3L_14720001	D16-c3
1726	chr3L	14725550	14725618	chr3L	14728587	14728637	Doc	5	3020	0.0	3.0	1.5	2.0	3087	chr3L	14725550	intron	ome +	chr3L	14727094	intron	ome +	chr3L	14728637	intron	ome +	chr3L_5_14725001	chr3L_14725001	D16-c3
1736	chr3L	14970741	14970749	chr3L	14971076	14971084	F-element	5	335	7.0	4.5	5.8	0.7	343	chr3L	14970741	intergenic	Tom +	chr3L	14970912	intergenic	not near genes	chr3L	14971084	intergenic	not near genes	chr3L_5_14970001	chr3L_14970001	D16-c3
1740	chr3L	15085023	15085082	chr3L	15086214	15086273	1360	14	1189	3.0	6.0	4.5	2.5	1250	chr3L	15085023	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086273	intron	cp309 -	chr3L_14_15085001	chr3L_15085001	D16-c3
1746	chr3L	15295741	15295801	chr3L	15298609	15298667	gypsy5	9	2867	5.0	5.0	5.0	1.5	2926	chr3L	15295741	intergenic	not near genes	chr3L	15297204	intergenic	not near genes	chr3L	15298667	intergenic	Best4 +	chr3L_9_15295001	chr3L_15295001	D16-c3
1749	chr3L	15423745	15423784	chr3L	15426614	15426651	opus	22	2869	4.5	3.0	3.8	4.6	2906	chr3L	15423745	intergenic	not near genes	chr3L	15425198	intergenic	not near genes	chr3L	15426651	intergenic	not near genes	chr3L_22_15425001	chr3L_15425001	D16-c3
1755	chr3L	15554898	15554943	chr3L	15556710	15556755	S-element	17	1812	4.0	7.5	5.8	2.5	1857	chr3L	15554898	intron	AGO2 +	chr3L	15555826	intron	AGO2 +	chr3L	15556755	intron	AGO2 +	chr3L_17_15555001	chr3L_15555001	D16-c3
1770	chr3L	15899202	15899251	chr3L	15899794	15899842	jockey	30	591	8.0	8.0	8.0	3.3	640	chr3L	15899202	intergenic	pHCl -	chr3L	15899522	intergenic	pHCl -	chr3L	15899842	intergenic	sff -	chr3L_30_15895001	chr3L_15895001	D16-c3
1771	chr3L	15929174	15929225	chr3L	15938342	15938397	roo	5	9171	0.0	2.5	1.2	2.3	9223	chr3L	15929174	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938397	intron	Pka-C3 -	chr3L_5_15930001	chr3L_15930001	D16-c3
1778	chr3L	16184091	16184135	chr3L	16188935	16188979	X-element	14	4844	4.0	11.5	7.8	1.6	4888	chr3L	16184091	intergenic	not near genes	chr3L	16186535	intergenic	not near genes	chr3L	16188979	intergenic	not near genes	chr3L_14_16185001	chr3L_16185001	D16-c3
1783	chr3L	16443822	16443876	chr3L	16446189	16446241	Doc	14	2365	2.0	3.5	2.8	3.7	2419	chr3L	16443822	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446241	intron,intron	CG33158 +,dsx-c73A -	chr3L_14_16445001	chr3L_16445001	D16-c3
1785	chr3L	16493954	16494002	chr3L	16494493	16494544	jockey	17	542	12.0	6.5	9.2	1.7	590	chr3L	16493954	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494249	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494544	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_17_16490001	chr3L_16490001	D16-c3
1794	chr3L	16616486	16616537	chr3L	16621839	16621890	297	17	5353	5.5	6.0	5.8	2.5	5404	chr3L	16616486	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621890	3` UTR	Abl -	chr3L_17_16615001	chr3L_16615001	D16-c3
1796	chr3L	16684010	16684039	chr3L	16689256	16689295	copia	8	5254	3.0	5.0	4.0	1.6	5285	chr3L	16684010	intron,intron	Lasp -,CG43954 -	chr3L	16686652	intron,intron	Lasp -,CG43954 -	chr3L	16689295	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_8_16685001	chr3L_16685001	D16-c3
1805	chr3L	16945705	16945756	chr3L	16954883	16954934	roo	29	9177	13.5	7.0	10.2	2.6	9229	chr3L	16945705	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954934	5` UTR	Nc73EF +	chr3L_29_16950001	chr3L_16950001	D16-c3
1806	chr3L	17034911	17034950	chr3L	17035124	17035163	G2	10	213	2.5	2.5	2.5	2.9	252	chr3L	17034911	intergenic	not near genes	chr3L	17035037	intergenic	not near genes	chr3L	17035163	intergenic	not near genes	chr3L_10_17035001	chr3L_17035001	D16-c3
1807	chr3L	17084983	17085034	chr3L	17094155	17094208	roo	22	9172	9.0	8.0	8.5	2.3	9225	chr3L	17084983	intron	Rbp6 -	chr3L	17089596	intron	Rbp6 -	chr3L	17094208	intron	Rbp6 -	chr3L_22_17085001	chr3L_17085001	D16-c3
1823	chr3L	17516964	17517008	chr3L	17524547	17524591	412	15	7581	6.0	8.0	7.0	1.9	7627	chr3L	17516964	intron	CG7564 +	chr3L	17520778	intron	CG7564 +	chr3L	17524591	3` UTR	CG7564 +	chr3L_15_17520001	chr3L_17520001	D16-c3
1828	chr3L	17730835	17730866	chr3L	17738190	17738221	mdg1	15	7354	3.5	3.0	3.2	3.6	7386	chr3L	17730835	intron	Ccn +	chr3L	17734528	intron	Ccn +	chr3L	17738221	intron	Ccn +	chr3L_15_17730001	chr3L_17730001	D16-c3
1836	chr3L	17918349	17918401	chr3L	17921177	17921229	opus	15	2828	2.0	3.0	2.5	4.3	2880	chr3L	17918349	intergenic	not near genes	chr3L	17919789	intergenic	not near genes	chr3L	17921229	intergenic	not near genes	chr3L_15_17915001	chr3L_17915001	D16-c3
1841	chr3L	18047681	18047736	chr3L	18056762	18056816	roo	19	9079	2.0	3.0	2.5	5.4	9135	chr3L	18047681	intron	Eip75B -	chr3L	18052248	intron	Eip75B -	chr3L	18056816	intron	Eip75B -	chr3L_19_18050001	chr3L_18050001	D16-c3
1864	chr3L	18506118	18506150	chr3L	18509605	18509635	F-element	5	3487	5.5	2.5	4.0	1.0	3517	chr3L	18506118	intergenic	not near genes	chr3L	18507876	intergenic	not near genes	chr3L	18509635	intergenic	not near genes	chr3L_5_18505001	chr3L_18505001	D16-c3
1865	chr3L	18528605	18528658	chr3L	18537791	18537844	roo	11	9186	1.5	3.0	2.2	3.4	9239	chr3L	18528605	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537844	intergenic	not near genes	chr3L_11_18530001	chr3L_18530001	D16-c3
1867	chr3L	18593924	18593980	chr3L	18595929	18595988	Doc	7	2005	5.0	1.0	3.0	1.8	2064	chr3L	18593924	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18595988	intergenic	CR45389 +	chr3L_7_18590001	chr3L_18590001	D16-c3
1875	chr3L	18772386	18772432	chr3L	18781092	18781138	roo	8	8706	5.5	5.0	5.2	1.3	8752	chr3L	18772386	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781138	intron	ftz-f1 -	chr3L_8_18775001	chr3L_18775001	D16-c3
1889	chr3L	19008827	19008870	chr3L	19009190	19009233	jockey	17	362	5.5	8.5	7.0	2.1	406	chr3L	19008827	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009233	intron	nkd -	chr3L_17_19005001	chr3L_19005001	D16-c3
1895	chr3L	19117020	19117076	chr3L	19124492	19124548	mdg1	19	7472	3.0	5.5	4.2	3.7	7528	chr3L	19117020	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124548	intron	CG14082 -	chr3L_19_19120001	chr3L_19120001	D16-c3
1899	chr3L	19208040	19208083	chr3L	19209439	19209482	Doc	21	1399	6.5	6.5	6.5	2.8	1442	chr3L	19208040	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209482	intron	fz2 -	chr3L_21_19205001	chr3L_19205001	D16-c3
1910	chr3L	19398914	19398932	chr3L	19403656	19403673	F-element	8	4742	4.0	6.0	5.0	1.3	4759	chr3L	19398914	intron	CG32206 -	chr3L	19401294	intron	CG32206 -	chr3L	19403673	intron	CG32206 -	chr3L_8_19400001	chr3L_19400001	D16-c3
1916	chr3L	19820277	19820305	chr3L	19827851	19827879	412	9	7573	3.0	1.5	2.2	2.8	7602	chr3L	19820277	intron	Deaf1 +	chr3L	19824078	intron	Deaf1 +	chr3L	19827879	intron	Deaf1 +	chr3L_9_19820001	chr3L_19820001	D16-c3
1917	chr3L	19848491	19848526	chr3L	19857706	19857741	roo	12	9214	6.0	3.5	4.8	2.1	9250	chr3L	19848491	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857741	intron	Papss +	chr3L_12_19850001	chr3L_19850001	D16-c3
1918	chr3L	19861797	19861853	chr3L	19863609	19863666	S-element	14	1812	2.0	4.0	3.0	3.5	1869	chr3L	19861797	5` UTR	CR45433 +	chr3L	19862732	intergenic	not near genes	chr3L	19863666	intergenic	not near genes	chr3L_14_19860001	chr3L_19860001	D16-c3
1925	chr3L	20113644	20113688	chr3L	20122926	20122970	roo	15	9282	4.0	3.0	3.5	3.3	9326	chr3L	20113644	intergenic	not near genes	chr3L	20118307	intergenic	not near genes	chr3L	20122970	intergenic	not near genes	chr3L_15_20115001	chr3L_20115001	D16-c3
1930	chr3L	20212581	20212585	chr3L	20218182	20218187	mdg3	4	5602	15.5	6.0	10.8	0.3	5606	chr3L	20212581	intergenic	CG7017 -	chr3L	20215384	intergenic	not near genes	chr3L	20218187	intergenic	CG6933 -	chr3L_4_20215001	chr3L_20215001	D16-c3
1931	chr3L	20257309	20257356	chr3L	20258454	20258501	pogo	18	1145	5.5	6.5	6.0	2.6	1192	chr3L	20257309	intron	rdgC +	chr3L	20257905	intron	rdgC +	chr3L	20258501	intron	rdgC +	chr3L_18_20255001	chr3L_20255001	D16-c3
1933	chr3L	20321121	20321127	chr3L	20342905	20342908	17.6	4	21782	14.5	22.0	18.2	0.2	21787	chr3L	20321121	exon	Spn77Bb +	chr3L	20332014	intergenic	not near genes	chr3L	20342908	exon	Spn77Bc +	chr3L_4_20330001	chr3L_20330001	D16-c3
1936	chr3L	20476729	20476782	chr3L	20484353	20484406	springer	15	7624	4.0	8.0	6.0	2.1	7677	chr3L	20476729	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484406	3` UTR	ZnT77C -	chr3L_15_20480001	chr3L_20480001	D16-c3
1937	chr3L	20487643	20487674	chr3L	20488119	20488150	INE-1	14	476	8.5	9.5	9.0	1.4	507	chr3L	20487643	intron	ZnT77C -	chr3L	20487896	intron	ZnT77C -	chr3L	20488150	exon	ZnT77C -	chr3L_14_20485001	chr3L_20485001	D16-c3
1939	chr3L	20590040	20590094	chr3L	20590604	20590658	412	13	564	6.0	4.0	5.0	2.2	618	chr3L	20590040	intergenic	not near genes	chr3L	20590349	intergenic	not near genes	chr3L	20590658	intergenic	not near genes	chr3L_13_20590001	chr3L_20590001	D16-c3
1942	chr3L	20821281	20821300	chr3L	20824774	20824794	NOF	6	3494	3.5	5.5	4.5	1.1	3513	chr3L	20821281	intron	Pka-R1 +	chr3L	20823038	intron	Pka-R1 +	chr3L	20824794	intron	Pka-R1 +	chr3L_6_20820001	chr3L_20820001	D16-c3
1948	chr3L	21014891	21014947	chr3L	21023397	21023453	Tirant	31	8504	5.5	9.0	7.2	3.8	8562	chr3L	21014891	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023453	intron	skd -	chr3L_31_21015001	chr3L_21015001	D16-c3
1952	chr3L	21151843	21151893	chr3L	21156952	21157002	flea	20	5109	9.5	10.0	9.8	1.9	5159	chr3L	21151843	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21157002	intron	Ac78C -	chr3L_20_21150001	chr3L_21150001	D16-c3
1958	chr3L	21243730	21243743	chr3L	21251309	21251331	412	5	7583	12.0	11.5	11.8	0.4	7601	chr3L	21243730	intron	Eip78C +	chr3L	21247530	intron	Eip78C +	chr3L	21251331	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	D16-c3
1960	chr3L	21306125	21306175	chr3L	21315309	21315359	roo	21	9184	6.5	5.5	6.0	3.0	9234	chr3L	21306125	3` UTR	CG7632 +	chr3L	21310742	intron	Pc -	chr3L	21315359	3` UTR	Pc -	chr3L_21_21310001	chr3L_21310001	D16-c3
1968	chr3L	21498825	21498862	chr3L	21500486	21500523	1360	8	1661	17.0	24.0	20.5	0.4	1698	chr3L	21498825	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499674	intron	Glg1 -	chr3L	21500523	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	D16-c3
1970	chr3L	21749294	21749335	chr3L	21754479	21754503	Doc	8	5183	7.5	19.5	13.5	0.6	5209	chr3L	21749294	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754503	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	D16-c3
1976	chr3L	22099661	22099701	chr3L	22105872	22105912	3S18	7	6210	18.0	18.5	18.2	0.4	6251	chr3L	22099661	intergenic	not near genes	chr3L	22102786	intergenic	not near genes	chr3L	22105912	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	D16-c3
1984	chr3L	22555753	22555796	chr3L	22563244	22563291	blood	9	7494	19.5	28.0	23.8	0.4	7538	chr3L	22555753	intergenic	not near genes	chr3L	22559522	intergenic	not near genes	chr3L	22563291	intergenic	not near genes	chr3L_9_22555001	chr3L_22555001	D16-c3
1986	chr3L	22577598	22577644	chr3L	22582411	22582457	Doc	21	4813	12.0	8.0	10.0	1.9	4859	chr3L	22577598	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582457	3` UTR	CG14459 -	chr3L_21_22580001	chr3L_22580001	D16-c3
1987	chr3L	22617173	22617222	chr3L	22624649	22624699	blood	13	7477	20.5	17.5	19.0	0.7	7526	chr3L	22617173	intron	CG14459 -	chr3L	22620936	intron	CG14459 -	chr3L	22624699	intron	CG14459 -	chr3L_13_22620001	chr3L_22620001	D16-c3
1990	chr3L	22761363	22761409	chr3L	22766822	22766868	Ivk	7	5459	14.0	9.5	11.8	0.5	5505	chr3L	22761363	intron	SPoCk +	chr3L	22764116	intron	SPoCk +	chr3L	22766868	intron	SPoCk +	chr3L_7_22760001	chr3L_22760001	D16-c3
1994	chr3L	22865967	22866004	chr3L	22867123	22867162	Doc	7	1157	5.5	5.5	5.5	1.1	1195	chr3L	22865967	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867162	intron	CG33170 +	chr3L_7_22865001	chr3L_22865001	D16-c3
1997	chr3L	22989838	22989883	chr3L	22996837	22996882	297	13	6999	6.0	4.5	5.2	2.1	7044	chr3L	22989838	intergenic	not near genes	chr3L	22993360	intergenic	not near genes	chr3L	22996882	intergenic	not near genes	chr3L_13_22990001	chr3L_22990001	D16-c3
1998	chr3L	23042210	23042252	chr3L	23048988	23049030	gypsy6	6	6778	18.5	16.5	17.5	0.3	6820	chr3L	23042210	intergenic	not near genes	chr3L	23045620	intergenic	not near genes	chr3L	23049030	intergenic	not near genes	chr3L_6_23045001	chr3L_23045001	D16-c3
2003	chr3L	24012390	24012422	chr3L	24020756	24020788	roo	4	8366	6.5	11.5	9.0	0.4	8398	chr3L	24012390	intergenic	not near genes	chr3L	24016589	intergenic	not near genes	chr3L	24020788	intergenic	not near genes	chr3L_4_24015001	chr3L_24015001	D16-c3
2004	chr3L	24168763	24168820	chr3L	24176116	24176170	ZAM	44	7352	10.5	10.5	10.5	3.8	7407	chr3L	24168763	intron	Snap25 +	chr3L	24172466	intron	Snap25 +	chr3L	24176170	intron	Snap25 +	chr3L_44_24170001	chr3L_24170001	D16-c3
2005	chr3L	24791877	24791915	chr3L	24796681	24796696	Doc	12	4802	2.5	4.5	3.5	2.7	4819	chr3L	24791877	intergenic	not near genes	chr3L	24794286	intergenic	not near genes	chr3L	24796696	intergenic	not near genes	chr3L_12_24790001	chr3L_24790001	D16-c3
2006	chr3L	24811050	24811051	chr3L	24821493	24821494	mdg1	4	10443	20.5	20.5	20.5	0.2	10444	chr3L	24811050	intergenic	not near genes	chr3L	24816272	intergenic	not near genes	chr3L	24821494	intergenic	not near genes	chr3L_4_24815001	chr3L_24815001	D16-c3
2022	chr3R	4105018	4105057	chr3R	4110247	4110286	copia	11	5228	9.0	9.5	9.2	1.1	5268	chr3R	4105018	intergenic	not near genes	chr3R	4107652	intergenic	not near genes	chr3R	4110286	intergenic	not near genes	chr3R_11_4105001	chr3R_4105001	D16-c3
2023	chr3R	4206067	4206084	chr3R	4211667	4211684	mdg3	4	5599	17.0	8.5	12.8	0.3	5617	chr3R	4206067	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211684	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	D16-c3
2025	chr3R	4408389	4408431	chr3R	4412718	4412760	Juan	9	4329	11.5	11.5	11.5	0.7	4371	chr3R	4408389	intron	CG32944 -	chr3R	4410574	intron	CG32944 -	chr3R	4412760	intron	CG32944 -	chr3R_9_4410001	chr3R_4410001	D16-c3
2030	chr3R	4683153	4683199	chr3R	4684937	4684983	S-element	9	1784	16.0	21.5	18.8	0.5	1830	chr3R	4683153	intron	CG43427 +	chr3R	4684068	intron	CG43427 +	chr3R	4684983	intron	CG43427 +	chr3R_9_4680001	chr3R_4680001	D16-c3
2033	chr3R	4753226	4753261	chr3R	4757553	4757588	F-element	9	4327	17.5	14.0	15.8	0.5	4362	chr3R	4753226	intron,intron	atms +,CG44098 -	chr3R	4755407	intron,intron	atms +,CG44098 -	chr3R	4757588	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	D16-c3
2036	chr3R	4887457	4887506	chr3R	4894859	4894908	rover	21	7401	6.0	5.5	5.8	3.1	7451	chr3R	4887457	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894908	intergenic	not near genes	chr3R_21_4890001	chr3R_4890001	D16-c3
2042	chr3R	5045822	5045875	chr3R	5052949	5053002	HMS-Beagle	12	7126	12.0	5.5	8.8	1.2	7180	chr3R	5045822	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053002	intergenic	CR45588 -	chr3R_12_5045001	chr3R_5045001	D16-c3
2044	chr3R	5067958	5068006	chr3R	5073500	5073548	mdg3	9	5542	17.0	18.5	17.8	0.5	5590	chr3R	5067958	intergenic	not near genes	chr3R	5070753	intergenic	not near genes	chr3R	5073548	intergenic	not near genes	chr3R_9_5070001	chr3R_5070001	D16-c3
2051	chr3R	5338377	5338411	chr3R	5343578	5343610	Rt1c	9	5202	9.5	50.0	29.8	0.3	5233	chr3R	5338377	intron	mtd -	chr3R	5340994	intron	mtd -	chr3R	5343610	intron	mtd -	chr3R_9_5340001	chr3R_5340001	D16-c3
2058	chr3R	5745991	5746044	chr3R	5746257	5746310	pogo	19	265	6.5	3.5	5.0	3.2	319	chr3R	5745991	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746310	3` UTR	Madm +	chr3R_19_5745001	chr3R_5745001	D16-c3
2059	chr3R	5746991	5747039	chr3R	5753207	5753255	diver	12	6216	1.5	4.0	2.8	3.2	6264	chr3R	5746991	intergenic	Madm +	chr3R	5750123	intergenic	not near genes	chr3R	5753255	intergenic	CG2091 -	chr3R_12_5750001	chr3R_5750001	D16-c3
2062	chr3R	5809090	5809138	chr3R	5809356	5809404	pogo	21	266	7.5	3.0	5.2	3.4	314	chr3R	5809090	3` UTR	CG11000 +	chr3R	5809247	3` UTR	CG11000 +	chr3R	5809404	3` UTR	CG11000 +	chr3R_21_5805001	chr3R_5805001	D16-c3
2063	chr3R	5822357	5822403	chr3R	5823549	5823595	1360	24	1192	10.0	11.5	10.8	2.0	1238	chr3R	5822357	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823595	3` UTR	CG2023 -	chr3R_24_5820001	chr3R_5820001	D16-c3
2070	chr3R	5927547	5927556	chr3R	5927812	5927821	pogo	6	264	13.0	2.5	7.8	0.7	274	chr3R	5927547	intron	CG34113 -	chr3R	5927684	intron	CG34113 -	chr3R	5927821	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	D16-c3
2071	chr3R	5927557	5927581	chr3R	5927807	5927846	pogo	9	263	12.0	2.5	7.2	1.1	289	chr3R	5927557	intron	CG34113 -	chr3R	5927702	intron	CG34113 -	chr3R	5927846	intron	CG34113 -	chr3R_9_5925001	chr3R_5925001	D16-c3
2079	chr3R	6015940	6015995	chr3R	6024445	6024501	Tirant	30	8507	7.0	10.0	8.5	3.2	8561	chr3R	6015940	intergenic	not near genes	chr3R	6020220	intergenic	not near genes	chr3R	6024501	intergenic	not near genes	chr3R_30_6020001	chr3R_6020001	D16-c3
2084	chr3R	6121165	6121182	chr3R	6121408	6121424	BS	5	243	0.0	3.0	1.5	2.0	259	chr3R	6121165	intergenic	not near genes	chr3R	6121294	intergenic	not near genes	chr3R	6121424	intergenic	not near genes	chr3R_5_6120001	chr3R_6120001	D16-c3
2086	chr3R	6158493	6158534	chr3R	6167100	6167142	Tirant	12	8607	10.5	8.0	9.2	1.2	8649	chr3R	6158493	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167142	intergenic	CG1077 +	chr3R_12_6160001	chr3R_6160001	D16-c3
2087	chr3R	6175154	6175202	chr3R	6182451	6182497	HMS-Beagle2	9	7297	5.5	4.0	4.8	1.6	7343	chr3R	6175154	intergenic	Osi1 +	chr3R	6178826	intron	CR45194 +	chr3R	6182497	intergenic	CR45194 +	chr3R_9_6175001	chr3R_6175001	D16-c3
2090	chr3R	6206267	6206320	chr3R	6206507	6206511	BS	24	238	8.5	8.0	8.2	2.6	244	chr3R	6206267	exon	Osi24 +	chr3R	6206389	intron	Osi24 +	chr3R	6206511	intron	Osi24 +	chr3R_24_6205001	chr3R_6205001	D16-c3
2095	chr3R	6510000	6510051	chr3R	6515106	6515157	jockey	8	5106	1.5	4.0	2.8	2.1	5157	chr3R	6510000	intergenic	not near genes	chr3R	6512578	intergenic	not near genes	chr3R	6515157	intergenic	not near genes	chr3R_8_6510001	chr3R_6510001	D16-c3
2100	chr3R	6737477	6737527	chr3R	6739289	6739339	Doc	19	1811	9.0	7.0	8.0	2.1	1862	chr3R	6737477	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739339	intron	pb -	chr3R_19_6735001	chr3R_6735001	D16-c3
2129	chr3R	7694554	7694609	chr3R	7713640	7713693	invader3	13	19086	3.0	5.5	4.2	2.5	19139	chr3R	7694554	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713693	intergenic	not near genes	chr3R_13_7700001	chr3R_7700001	D16-c3
2131	chr3R	7729444	7729493	chr3R	7737407	7737454	Stalker2	14	7963	6.0	7.0	6.5	1.9	8010	chr3R	7729444	intergenic	not near genes	chr3R	7733449	intergenic	not near genes	chr3R	7737454	intergenic	not near genes	chr3R_14_7730001	chr3R_7730001	D16-c3
2132	chr3R	7849618	7849671	chr3R	7850810	7850863	1360	10	1192	5.5	6.5	6.0	1.4	1245	chr3R	7849618	intron	CG34384 +	chr3R	7850240	intron	CG34384 +	chr3R	7850863	intron	CG34384 +	chr3R_10_7850001	chr3R_7850001	D16-c3
2137	chr3R	7973298	7973348	chr3R	7974385	7974436	1360	7	1089	3.5	4.0	3.8	1.5	1138	chr3R	7973298	intergenic	not near genes	chr3R	7973867	intergenic	not near genes	chr3R	7974436	3` UTR	CD98hc -	chr3R_7_7970001	chr3R_7970001	D16-c3
2143	chr3R	8090546	8090567	chr3R	8094048	8094069	297	9	3502	7.5	19.0	13.2	0.6	3523	chr3R	8090546	intergenic	CR44330 +	chr3R	8092308	intergenic	not near genes	chr3R	8094069	intergenic	CG7900 +	chr3R_9_8090001	chr3R_8090001	D16-c3
2144	chr3R	8094392	8094436	chr3R	8099722	8099766	Transpac	13	5329	8.0	9.0	8.5	1.4	5374	chr3R	8094392	intron	CG7900 +	chr3R	8097079	intron	CG7900 +	chr3R	8099766	intron	CG7900 +	chr3R_13_8095001	chr3R_8095001	D16-c3
2145	chr3R	8101738	8101788	chr3R	8104847	8104897	G2	20	3109	7.0	8.5	7.8	2.3	3159	chr3R	8101738	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104897	3` UTR	CG7900 +	chr3R_20_8100001	chr3R_8100001	D16-c3
2147	chr3R	8207529	8207583	chr3R	8208399	8208453	F-element	14	870	2.0	4.5	3.2	3.3	924	chr3R	8207529	intergenic	not near genes	chr3R	8207991	intergenic	not near genes	chr3R	8208453	intergenic	not near genes	chr3R_14_8205001	chr3R_8205001	D16-c3
2152	chr3R	8402986	8402994	chr3R	8412177	8412185	roo	5	9191	20.5	11.0	15.8	0.3	9199	chr3R	8402986	intron	CG45263 -	chr3R	8407586	intron	CG45263 -	chr3R	8412185	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	D16-c3
2153	chr3R	8402995	8403035	chr3R	8412175	8412226	roo	22	9190	10.5	11.0	10.8	1.9	9231	chr3R	8402995	intron	CG45263 -	chr3R	8407610	intron	CG45263 -	chr3R	8412226	intron	CG45263 -	chr3R_22_8405001	chr3R_8405001	D16-c3
2158	chr3R	8570460	8570500	chr3R	8575118	8575161	HMS-Beagle	10	4659	1.5	2.5	2.0	3.3	4701	chr3R	8570460	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575161	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	D16-c3
2160	chr3R	8601751	8601796	chr3R	8610929	8610974	roo	14	9178	5.0	6.0	5.5	2.2	9223	chr3R	8601751	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610974	intron	5-HT2B +	chr3R_14_8605001	chr3R_8605001	D16-c3
2162	chr3R	8707332	8707382	chr3R	8709798	8709848	jockey	20	2465	1.5	7.0	4.2	3.8	2516	chr3R	8707332	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709848	intergenic	not near genes	chr3R_20_8705001	chr3R_8705001	D16-c3
2163	chr3R	8898197	8898212	chr3R	8913801	8913817	297	6	15604	17.0	10.0	13.5	0.4	15620	chr3R	8898197	intron	pyd -	chr3R	8906007	intron	pyd -	chr3R	8913817	intron	pyd -	chr3R_6_8905001	chr3R_8905001	D16-c3
2178	chr3R	9278756	9278806	chr3R	9284042	9284091	Rt1a	15	5285	5.5	11.0	8.2	1.6	5335	chr3R	9278756	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284091	intergenic	not near genes	chr3R_15_9280001	chr3R_9280001	D16-c3
2179	chr3R	9304510	9304516	chr3R	9311821	9311826	Stalker4	4	7311	13.0	5.5	9.2	0.4	7316	chr3R	9304510	intron	CG8861 -	chr3R	9308168	intron	CG8861 -	chr3R	9311826	intron	CG8861 -	chr3R_4_9305001	chr3R_9305001	D16-c3
2180	chr3R	9319556	9319592	chr3R	9320016	9320052	jockey	16	459	8.5	5.5	7.0	2.0	496	chr3R	9319556	intron	CG8861 -	chr3R	9319804	intron	CG8861 -	chr3R	9320052	intron	CG8861 -	chr3R_16_9315001	chr3R_9315001	D16-c3
2181	chr3R	9361804	9361845	chr3R	9362070	9362111	pogo	12	266	2.5	2.5	2.5	3.4	307	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361958	3` UTR	CG45050 +	chr3R	9362111	3` UTR	CG45050 +	chr3R_12_9360001	chr3R_9360001	D16-c3
2188	chr3R	9699957	9700002	chr3R	9700071	9700116	1360	26	114	6.5	6.5	6.5	3.5	159	chr3R	9699957	intron	Unc-115a -	chr3R	9700036	intron	Unc-115a -	chr3R	9700116	intron	Unc-115a -	chr3R_26_9700001	chr3R_9700001	D16-c3
2194	chr3R	10231758	10231813	chr3R	10237360	10237415	mdg3	20	5601	3.0	3.5	3.2	4.8	5657	chr3R	10231758	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237415	intron	CG42795 +	chr3R_20_10230001	chr3R_10230001	D16-c3
2195	chr3R	10255368	10255376	chr3R	10260833	10260841	I-element	4	5465	7.5	10.5	9.0	0.4	5473	chr3R	10255368	3` UTR	Sirt6 -	chr3R	10258104	intron	Sirt6 -	chr3R	10260841	exon	Sirt6 -	chr3R_4_10255001	chr3R_10255001	D16-c3
2206	chr3R	10804149	10804200	chr3R	10811706	10811757	17.6	18	7557	2.0	4.5	3.2	4.3	7608	chr3R	10804149	intergenic	CG14692 -	chr3R	10807953	intergenic	not near genes	chr3R	10811757	3` UTR	CG14693 -	chr3R_18_10805001	chr3R_10805001	D16-c3
2209	chr3R	10957864	10957885	chr3R	10963264	10963286	Rt1c	11	5401	14.5	7.5	11.0	0.9	5422	chr3R	10957864	intergenic	not near genes	chr3R	10960575	intergenic	not near genes	chr3R	10963286	intergenic	not near genes	chr3R_11_10960001	chr3R_10960001	D16-c3
2211	chr3R	11065601	11065618	chr3R	11071258	11071260	297	4	5663	2.5	6.0	4.2	0.8	5659	chr3R	11065601	intergenic	not near genes	chr3R	11068430	intergenic	not near genes	chr3R	11071260	intergenic	not near genes	chr3R_4_11065001	chr3R_11065001	D16-c3
2222	chr3R	11379213	11379253	chr3R	11388393	11388433	roo	18	9180	5.0	5.0	5.0	3.0	9220	chr3R	11379213	intron	pros +	chr3R	11383823	intron	pros +	chr3R	11388433	intron	pros +	chr3R_18_11380001	chr3R_11380001	D16-c3
2229	chr3R	11841039	11841090	chr3R	11846255	11846306	BS	35	5216	10.5	9.0	9.8	3.2	5267	chr3R	11841039	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846306	intron	CG6959 -	chr3R_35_11840001	chr3R_11840001	D16-c3
2232	chr3R	12022860	12022916	chr3R	12025062	12025118	pogo	19	2200	3.0	5.5	4.2	3.7	2258	chr3R	12022860	intergenic	not near genes	chr3R	12023989	intergenic	not near genes	chr3R	12025118	intergenic	not near genes	chr3R_19_12020001	chr3R_12020001	D16-c3
2258	chr3R	12920136	12920182	chr3R	12925363	12925410	copia	17	5227	5.5	6.5	6.0	2.4	5274	chr3R	12920136	intron	beat-Vb +	chr3R	12922773	intron	beat-Vb +	chr3R	12925410	intron	beat-Vb +	chr3R_17_12920001	chr3R_12920001	D16-c3
2266	chr3R	13135812	13135857	chr3R	13138012	13138057	pogo	17	2200	5.5	6.0	5.8	2.5	2245	chr3R	13135812	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136934	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138057	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_17_13135001	chr3R_13135001	D16-c3
2267	chr3R	13143017	13143064	chr3R	13148618	13148665	mdg3	23	5601	7.5	9.0	8.2	2.5	5648	chr3R	13143017	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145841	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148665	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_23_13145001	chr3R_13145001	D16-c3
2272	chr3R	13314070	13314115	chr3R	13318884	13318928	Doc	5	4814	3.5	2.0	2.8	1.3	4858	chr3R	13314070	intergenic	not near genes	chr3R	13316499	intergenic	not near genes	chr3R	13318928	intergenic	CG45080 -	chr3R_5_13315001	chr3R_13315001	D16-c3
2288	chr3R	14021622	14021678	chr3R	14023464	14023520	S-element	22	1842	4.0	4.0	4.0	4.4	1898	chr3R	14021622	intron	rdx -	chr3R	14022571	intron	rdx -	chr3R	14023520	intron	rdx -	chr3R_22_14020001	chr3R_14020001	D16-c3
2293	chr3R	14180786	14180830	chr3R	14185576	14185620	F-element	12	4790	5.0	5.0	5.0	2.0	4834	chr3R	14180786	intron	Dop1R1 -	chr3R	14183203	intron	Dop1R1 -	chr3R	14185620	intron	Dop1R1 -	chr3R_12_14180001	chr3R_14180001	D16-c3
2294	chr3R	14194405	14194456	chr3R	14203579	14203628	roo	12	9174	8.0	3.5	5.8	1.8	9223	chr3R	14194405	intron	Dop1R1 -	chr3R	14199016	intron	Dop1R1 -	chr3R	14203628	intron	Dop1R1 -	chr3R_12_14195001	chr3R_14195001	D16-c3
2295	chr3R	14246381	14246418	chr3R	14247894	14247938	jockey	18	1519	9.0	11.0	10.0	1.6	1557	chr3R	14246381	intergenic	not near genes	chr3R	14247160	intergenic	not near genes	chr3R	14247938	intergenic	not near genes	chr3R_18_14245001	chr3R_14245001	D16-c3
2313	chr3R	15041400	15041414	chr3R	15045209	15045223	Doc	5	3809	0.0	9.5	4.8	0.9	3823	chr3R	15041400	intergenic	not near genes	chr3R	15043312	intergenic	not near genes	chr3R	15045223	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	D16-c3
2314	chr3R	15059252	15059478	chr3R	15059471	15059590	BS	17	201	0.0	0.0	0.0	17.0	338	chr3R	15059252	intron	dpr9 -	chr3R	15059421	intron	dpr9 -	chr3R	15059590	intron	dpr9 -	chr3R_17_15055001	chr3R_15055001	D16-c3
2316	chr3R	15079791	15079821	chr3R	15080057	15080087	pogo	16	266	8.5	0.0	4.2	3.1	296	chr3R	15079791	3` UTR	CG6966 -	chr3R	15079939	3` UTR	CG6966 -	chr3R	15080087	3` UTR	CG6966 -	chr3R_16_15075001	chr3R_15075001	D16-c3
2318	chr3R	15102489	15102531	chr3R	15109771	15109810	412	10	7282	0.5	5.0	2.8	2.6	7321	chr3R	15102489	intron	CG42788 -	chr3R	15106150	intron	CG42788 -	chr3R	15109810	intron	CG42788 -	chr3R_10_15105001	chr3R_15105001	D16-c3
2320	chr3R	15132044	15132085	chr3R	15135129	15135176	Juan	26	3088	17.0	11.0	14.0	1.7	3132	chr3R	15132044	intergenic	CG42788 -	chr3R	15133610	intergenic	not near genes	chr3R	15135176	3` UTR	CG6912 -	chr3R_26_15130001	chr3R_15130001	D16-c3
2322	chr3R	15162525	15162545	chr3R	15167318	15167338	F-element	10	4793	11.5	1.0	6.2	1.4	4813	chr3R	15162525	intron	Gyc88E +	chr3R	15164932	intron	Gyc88E +	chr3R	15167338	intron	Gyc88E +	chr3R_10_15160001	chr3R_15160001	D16-c3
2327	chr3R	15601147	15601194	chr3R	15608694	15608741	412	21	7547	11.0	6.0	8.5	2.2	7594	chr3R	15601147	intergenic	not near genes	chr3R	15604944	intergenic	not near genes	chr3R	15608741	intergenic	not near genes	chr3R_21_15600001	chr3R_15600001	D16-c3
2328	chr3R	15618732	15618761	chr3R	15626224	15626257	blood	5	7497	2.0	3.5	2.8	1.3	7525	chr3R	15618732	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626257	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	D16-c3
2332	chr3R	15735228	15735233	chr3R	15739973	15739978	F-element	4	4745	2.0	5.5	3.8	0.8	4750	chr3R	15735228	intergenic	not near genes	chr3R	15737603	intergenic	not near genes	chr3R	15739978	intergenic	not near genes	chr3R_4_15735001	chr3R_15735001	D16-c3
2342	chr3R	16756294	16756345	chr3R	16762510	16762561	diver	19	6215	5.5	2.0	3.8	4.0	6267	chr3R	16756294	intron	bxd -	chr3R	16759428	intron	bxd -	chr3R	16762561	intron	bxd -	chr3R_19_16755001	chr3R_16755001	D16-c3
2346	chr3R	17294647	17294692	chr3R	17295100	17295145	BS	18	453	8.0	6.0	7.0	2.2	498	chr3R	17294647	intergenic	not near genes	chr3R	17294896	intergenic	not near genes	chr3R	17295145	intergenic	not near genes	chr3R_18_17290001	chr3R_17290001	D16-c3
2357	chr3R	17591272	17591320	chr3R	17591733	17591781	F-element	24	460	5.0	9.0	7.0	3.0	509	chr3R	17591272	intergenic	not near genes	chr3R	17591526	intergenic	not near genes	chr3R	17591781	intergenic	not near genes	chr3R_24_17590001	chr3R_17590001	D16-c3
2361	chr3R	17763139	17763141	chr3R	17763650	17763652	roo	4	511	19.5	6.0	12.8	0.3	513	chr3R	17763139	5` UTR	TyrR -	chr3R	17763396	intergenic	TyrR -	chr3R	17763652	intergenic	TyrR -	chr3R_4_17760001	chr3R_17760001	D16-c3
2368	chr3R	17925835	17925876	chr3R	17927325	17927368	hobo	18	1492	8.0	10.5	9.2	1.8	1533	chr3R	17925835	intron	cpo +	chr3R	17926602	intron	cpo +	chr3R	17927368	intron	cpo +	chr3R_18_17925001	chr3R_17925001	D16-c3
2370	chr3R	18032800	18032807	chr3R	18040498	18040505	opus	7	7698	0.5	12.5	6.5	0.9	7705	chr3R	18032800	intergenic	not near genes	chr3R	18036652	intergenic	not near genes	chr3R	18040505	intergenic	not near genes	chr3R_7_18035001	chr3R_18035001	D16-c3
2386	chr3R	18606479	18606525	chr3R	18610736	18610782	F-element	12	4256	5.0	2.5	3.8	2.5	4303	chr3R	18606479	intron,intron	qin +,CG14304 -	chr3R	18608630	intron,intron	qin +,CG14304 -	chr3R	18610782	intron,intron	qin +,CG14304 -	chr3R_12_18605001	chr3R_18605001	D16-c3
2396	chr3R	18934428	18934438	chr3R	18934530	18934540	roo	9	102	8.0	15.0	11.5	0.7	112	chr3R	18934428	intron	CG42613 +	chr3R	18934484	intron	CG42613 +	chr3R	18934540	intron	CG42613 +	chr3R_9_18930001	chr3R_18930001	D16-c3
2399	chr3R	19193002	19193008	chr3R	19197281	19197337	F-element	15	4303	2.0	8.0	5.0	2.5	4335	chr3R	19193002	intron	CG31475 +	chr3R	19195170	intron	CG31475 +	chr3R	19197337	intron	CG31475 +	chr3R_15_19195001	chr3R_19195001	D16-c3
2421	chr3R	20156672	20156717	chr3R	20165867	20165910	roo	11	9195	6.0	4.0	5.0	1.8	9238	chr3R	20156672	intergenic	not near genes	chr3R	20161291	intergenic	not near genes	chr3R	20165910	intergenic	not near genes	chr3R_11_20160001	chr3R_20160001	D16-c3
2423	chr3R	20330980	20331026	chr3R	20331491	20331537	roo	9	511	6.0	3.0	4.5	1.6	557	chr3R	20330980	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331537	intergenic	not near genes	chr3R_9_20330001	chr3R_20330001	D16-c3
2435	chr3R	20854447	20854503	chr3R	20859267	20859318	Doc	11	4819	0.5	6.5	3.5	2.4	4871	chr3R	20854447	intron	Ir93a -	chr3R	20856882	intron	Ir93a -	chr3R	20859318	exon	Ir93a -	chr3R_11_20855001	chr3R_20855001	D16-c3
2444	chr3R	21141648	21141678	chr3R	21150154	21150184	Tirant	20	8506	19.5	8.0	13.8	1.4	8536	chr3R	21141648	intron	SNF4Agamma +	chr3R	21145916	intron	SNF4Agamma +	chr3R	21150184	intron	SNF4Agamma +	chr3R_20_21145001	chr3R_21145001	D16-c3
2460	chr3R	21761096	21761153	chr3R	21768513	21768568	mdg1	44	7416	7.5	9.5	8.5	4.6	7472	chr3R	21761096	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768568	exon	CG42335 +	chr3R_44_21760001	chr3R_21760001	D16-c3
2485	chr3R	22234665	22234711	chr3R	22236009	22236055	pogo	13	1344	2.5	3.5	3.0	3.2	1390	chr3R	22234665	intron	SKIP +	chr3R	22235360	intron	SKIP +	chr3R	22236055	intron	SKIP +	chr3R_13_22235001	chr3R_22235001	D16-c3
2486	chr3R	22239473	22239524	chr3R	22248558	22248597	roo	15	9076	6.5	1.0	3.8	3.1	9124	chr3R	22239473	intron	SKIP +	chr3R	22244035	intron	SKIP +	chr3R	22248597	intron	SKIP +	chr3R_15_22240001	chr3R_22240001	D16-c3
2493	chr3R	22450522	22450574	chr3R	22453187	22453239	NOF	22	2665	4.5	7.5	6.0	3.1	2717	chr3R	22450522	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453239	intron	CG34376 +	chr3R_22_22450001	chr3R_22450001	D16-c3
2503	chr3R	22881185	22881232	chr3R	22884916	22884962	Doc	5	3730	3.5	5.0	4.2	1.0	3777	chr3R	22881185	intergenic	not near genes	chr3R	22883074	intergenic	not near genes	chr3R	22884962	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	D16-c3
2518	chr3R	23558377	23558428	chr3R	23560183	23560234	Bari1	16	1806	4.0	6.5	5.2	2.6	1857	chr3R	23558377	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560234	intron	beat-IV +	chr3R_16_23555001	chr3R_23555001	D16-c3
2520	chr3R	23684672	23684723	chr3R	23685181	23685232	roo	48	510	15.0	10.5	12.8	3.5	560	chr3R	23684672	exon	CG18754 +	chr3R	23684952	intron	CG18754 +	chr3R	23685232	exon	CG18754 +	chr3R_48_23680001	chr3R_23680001	D16-c3
2522	chr3R	23835385	23835400	chr3R	23844560	23844575	roo	7	9175	8.5	0.0	4.2	1.3	9190	chr3R	23835385	intron	CG34355 +	chr3R	23839980	intron	CG34355 +	chr3R	23844575	intron	CG34355 +	chr3R_7_23835001	chr3R_23835001	D16-c3
2523	chr3R	23851073	23851087	chr3R	23858765	23858779	opus	5	7692	2.0	8.5	5.2	0.8	7706	chr3R	23851073	3` UTR	CG34355 +	chr3R	23854926	intergenic	not near genes	chr3R	23858779	intergenic	not near genes	chr3R_5_23850001	chr3R_23850001	D16-c3
2530	chr3R	24072063	24072119	chr3R	24072526	24072580	jockey	20	461	11.0	0.0	5.5	3.1	517	chr3R	24072063	intron	4EHP -	chr3R	24072322	intron	4EHP -	chr3R	24072580	intron	4EHP -	chr3R_20_24070001	chr3R_24070001	D16-c3
2531	chr3R	24076895	24076946	chr3R	24078387	24078438	hobo	29	1492	11.5	8.0	9.8	2.7	1543	chr3R	24076895	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078438	intron	4EHP -	chr3R_29_24075001	chr3R_24075001	D16-c3
2534	chr3R	24594652	24594667	chr3R	24594917	24594932	pogo	7	265	3.0	15.0	9.0	0.7	280	chr3R	24594652	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594932	intron	mld +	chr3R_7_24590001	chr3R_24590001	D16-c3
2541	chr3R	24730075	24730100	chr3R	24732478	24732500	Doc	11	2403	10.5	0.0	5.2	1.8	2425	chr3R	24730075	intron	tok +	chr3R	24731288	intron	tok +	chr3R	24732500	intron	tok +	chr3R_11_24730001	chr3R_24730001	D16-c3
2547	chr3R	24927106	24927151	chr3R	24931922	24931966	Doc	13	4816	5.5	11.5	8.5	1.4	4860	chr3R	24927106	intergenic	Trf4-2 +	chr3R	24929536	intergenic	not near genes	chr3R	24931966	intergenic	CG11771 +	chr3R_13_24925001	chr3R_24925001	D16-c3
2567	chr3R	25725810	25725845	chr3R	25734995	25735030	roo	15	9185	6.5	3.0	4.8	2.6	9220	chr3R	25725810	intron	LpR2 -	chr3R	25730420	intron	LpR2 -	chr3R	25735030	intron	LpR2 -	chr3R_15_25730001	chr3R_25730001	D16-c3
2569	chr3R	26108802	26108817	chr3R	26117410	26117425	Tirant	9	8608	23.5	0.0	11.8	0.7	8623	chr3R	26108802	5` UTR	CG31324 +	chr3R	26113114	intron	CG31324 +	chr3R	26117425	intron	CG31324 +	chr3R_9_26110001	chr3R_26110001	D16-c3
2577	chr3R	26376302	26376343	chr3R	26385487	26385528	roo	23	9185	9.0	0.5	4.8	4.0	9226	chr3R	26376302	intergenic	not near genes	chr3R	26380915	intergenic	not near genes	chr3R	26385528	intergenic	not near genes	chr3R_23_26380001	chr3R_26380001	D16-c3
2581	chr3R	26558310	26558359	chr3R	26565647	26565650	Stalker4	31	7335	10.5	13.0	11.8	2.4	7340	chr3R	26558310	intron	scrib +	chr3R	26561980	intron	scrib +	chr3R	26565650	intron	scrib +	chr3R_31_26560001	chr3R_26560001	D16-c3
2583	chr3R	26642707	26642761	chr3R	26643125	26643180	jockey	12	418	4.5	3.0	3.8	2.5	473	chr3R	26642707	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643180	intergenic	not near genes	chr3R_12_26640001	chr3R_26640001	D16-c3
2586	chr3R	26810526	26810581	chr3R	26811036	26811091	roo	13	510	4.0	10.5	7.2	1.6	565	chr3R	26810526	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811091	intron	Tl +	chr3R_13_26810001	chr3R_26810001	D16-c3
2590	chr3R	27007381	27007427	chr3R	27016541	27016587	roo	8	9160	6.5	3.0	4.8	1.4	9206	chr3R	27007381	intron	RYa-R +	chr3R	27011984	intron	RYa-R +	chr3R	27016587	intron	RYa-R +	chr3R_8_27010001	chr3R_27010001	D16-c3
2595	chr3R	27140492	27140541	chr3R	27148127	27148176	412	23	7635	9.0	6.0	7.5	2.7	7684	chr3R	27140492	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148176	intron	CG6051 -	chr3R_23_27140001	chr3R_27140001	D16-c3
2599	chr3R	27342772	27342823	chr3R	27351377	27351429	Tirant	23	8606	4.0	7.0	5.5	3.5	8657	chr3R	27342772	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351429	intron	CG42534 +	chr3R_23_27345001	chr3R_27345001	D16-c3
2602	chr3R	27521146	27521175	chr3R	27530377	27530409	roo	9	9233	5.5	2.5	4.0	1.8	9263	chr3R	27521146	intron	CG12885 +	chr3R	27525778	intron	CG12885 +	chr3R	27530409	intron	CG12885 +	chr3R_9_27525001	chr3R_27525001	D16-c3
2607	chr3R	27725553	27725589	chr3R	27731017	27731056	I-element	10	5466	5.5	6.5	6.0	1.4	5503	chr3R	27725553	intergenic	not near genes	chr3R	27728304	intergenic	not near genes	chr3R	27731056	intergenic	not near genes	chr3R_10_27725001	chr3R_27725001	D16-c3
2610	chr3R	27791635	27791647	chr3R	27794792	27794816	Rt1c	4	3163	14.0	18.0	16.0	0.2	3181	chr3R	27791635	intron	CG34353 -	chr3R	27793226	intron	CG34353 -	chr3R	27794816	intron	CG34353 -	chr3R_4_27790001	chr3R_27790001	D16-c3
2611	chr3R	27856740	27856786	chr3R	27858248	27858294	hopper2	14	1507	2.0	2.5	2.2	4.4	1554	chr3R	27856740	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858294	intron	CG34353 -	chr3R_14_27855001	chr3R_27855001	D16-c3
2612	chr3R	27862944	27862979	chr3R	27868272	27868309	Transpac	11	5329	10.0	6.5	8.2	1.2	5365	chr3R	27862944	intron	CG34353 -	chr3R	27865626	intron	CG34353 -	chr3R	27868309	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	D16-c3
2613	chr3R	27875683	27875729	chr3R	27882763	27882809	297	23	7080	5.0	7.0	6.0	3.3	7126	chr3R	27875683	intron	CG34353 -	chr3R	27879246	intron	CG34353 -	chr3R	27882809	intron	CG34353 -	chr3R_23_27875001	chr3R_27875001	D16-c3
2617	chr3R	28068474	28068524	chr3R	28073939	28073991	I-element	15	5466	0.0	6.0	3.0	3.8	5517	chr3R	28068474	intron	CG34362 +	chr3R	28071232	intron	CG34362 +	chr3R	28073991	intron	CG34362 +	chr3R_15_28070001	chr3R_28070001	D16-c3
2618	chr3R	28173657	28173703	chr3R	28181112	28181158	mdg1	12	7455	1.5	3.0	2.2	3.8	7501	chr3R	28173657	intron	CG34354 +	chr3R	28177408	intron	CG34354 +	chr3R	28181158	intron	CG34354 +	chr3R_12_28175001	chr3R_28175001	D16-c3
2619	chr3R	28253315	28253365	chr3R	28255850	28255900	jockey	15	2535	5.0	4.5	4.8	2.6	2585	chr3R	28253315	intergenic	not near genes	chr3R	28254608	intergenic	not near genes	chr3R	28255900	intergenic	not near genes	chr3R_15_28250001	chr3R_28250001	D16-c3
2620	chr3R	28302096	28302131	chr3R	28302558	28302590	jockey	10	463	4.5	3.5	4.0	2.0	494	chr3R	28302096	intergenic	not near genes	chr3R	28302343	intergenic	not near genes	chr3R	28302590	intergenic	not near genes	chr3R_10_28300001	chr3R_28300001	D16-c3
2636	chr3R	28758304	28758316	chr3R	28771336	28771348	Stalker4	6	13032	2.5	3.0	2.8	1.6	13044	chr3R	28758304	intergenic	aqrs -	chr3R	28764826	intergenic	not near genes	chr3R	28771348	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	D16-c3
2637	chr3R	28792847	28792855	chr3R	28797967	28797975	jockey	4	5120	14.0	5.5	9.8	0.4	5128	chr3R	28792847	intergenic	not near genes	chr3R	28795411	intergenic	not near genes	chr3R	28797975	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	D16-c3
2638	chr3R	28792857	28792901	chr3R	28797966	28798021	jockey	26	5118	6.0	5.5	5.8	3.8	5164	chr3R	28792857	intergenic	not near genes	chr3R	28795439	intergenic	not near genes	chr3R	28798021	intergenic	not near genes	chr3R_26_28795001	chr3R_28795001	D16-c3
2649	chr3R	29079384	29079408	chr3R	29080777	29080805	NOF	8	1396	4.0	6.5	5.2	1.3	1421	chr3R	29079384	intron	CG11873 +	chr3R	29080094	intron	CG11873 +	chr3R	29080805	intron	CG11873 +	chr3R_8_29080001	chr3R_29080001	D16-c3
2659	chr3R	29319806	29319850	chr3R	29320148	29320194	jockey	14	343	5.5	7.0	6.2	1.9	388	chr3R	29319806	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320194	intergenic	not near genes	chr3R_14_29315001	chr3R_29315001	D16-c3
2664	chr3R	29406609	29406644	chr3R	29407919	29407955	jockey	24	1311	11.5	10.5	11.0	2.0	1346	chr3R	29406609	intron	Ptp99A +	chr3R	29407282	intron	Ptp99A +	chr3R	29407955	intron	Ptp99A +	chr3R_24_29405001	chr3R_29405001	D16-c3
2678	chr3R	29738247	29738295	chr3R	29739737	29739787	hobo	13	1491	5.5	2.0	3.8	2.7	1540	chr3R	29738247	intergenic	CG1969 +,CG7598 +	chr3R	29739017	intron	CG1969 +	chr3R	29739787	5` UTR	CG1969 +	chr3R_13_29735001	chr3R_29735001	D16-c3
2680	chr3R	29760335	29760388	chr3R	29761561	29761614	pogo	8	1226	5.0	0.0	2.5	2.3	1279	chr3R	29760335	intergenic	not near genes	chr3R	29760974	intergenic	not near genes	chr3R	29761614	intergenic	not near genes	chr3R_8_29760001	chr3R_29760001	D16-c3
2682	chr3R	29881999	29882051	chr3R	29891181	29891233	roo	20	9182	4.0	6.0	5.0	3.3	9234	chr3R	29881999	intron	CG31038 +	chr3R	29886616	intron	CG31038 +	chr3R	29891233	intron	CG31038 +	chr3R_20_29885001	chr3R_29885001	D16-c3
2688	chr3R	30084849	30084876	chr3R	30086335	30086359	hobo	15	1490	0.0	6.0	3.0	3.8	1510	chr3R	30084849	intron	sima +	chr3R	30085604	intron	sima +	chr3R	30086359	intron	sima +	chr3R_15_30085001	chr3R_30085001	D16-c3
2692	chr3R	30238735	30238772	chr3R	30239924	30239962	1360	8	1189	6.5	0.0	3.2	1.9	1227	chr3R	30238735	intergenic	not near genes	chr3R	30239348	intergenic	not near genes	chr3R	30239962	intergenic	not near genes	chr3R_8_30235001	chr3R_30235001	D16-c3
2694	chr3R	30317305	30317353	chr3R	30324921	30324970	roo	7	7617	2.5	3.5	3.0	1.8	7665	chr3R	30317305	intron	hdc +	chr3R	30321138	intron	hdc +	chr3R	30324970	intron	hdc +	chr3R_7_30320001	chr3R_30320001	D16-c3
2696	chr3R	30375520	30375570	chr3R	30383168	30383218	412	12	7648	3.0	2.0	2.5	3.4	7698	chr3R	30375520	intergenic	not near genes	chr3R	30379369	intergenic	not near genes	chr3R	30383218	intergenic	not near genes	chr3R_12_30375001	chr3R_30375001	D16-c3
2697	chr3R	30396194	30396241	chr3R	30404485	30404532	roo	18	8291	6.5	6.5	6.5	2.4	8338	chr3R	30396194	intergenic	not near genes	chr3R	30400363	intergenic	not near genes	chr3R	30404532	5` UTR	CR45570 +	chr3R_18_30400001	chr3R_30400001	D16-c3
2700	chr3R	30480450	30480508	chr3R	30482943	30483001	jockey	36	2492	9.5	7.5	8.5	3.8	2551	chr3R	30480450	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30483001	intron	PH4alphaEFB +	chr3R_36_30480001	chr3R_30480001	D16-c3
2707	chr3R	30679507	30679552	chr3R	30687000	30687046	blood	10	7494	6.0	6.5	6.2	1.4	7539	chr3R	30679507	intergenic	not near genes	chr3R	30683276	intergenic	not near genes	chr3R	30687046	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	D16-c3
2710	chr3R	30818790	30818840	chr3R	30820379	30820430	1360	18	1590	4.5	3.5	4.0	3.6	1640	chr3R	30818790	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820430	intron	cindr +	chr3R_18_30815001	chr3R_30815001	D16-c3
2721	chr3R	31074204	31074259	chr3R	31081827	31081889	springer	18	7625	6.5	0.0	3.2	4.3	7685	chr3R	31074204	intron	Sox100B +	chr3R	31078046	intron	Sox100B +	chr3R	31081889	intron	Sox100B +	chr3R_18_31075001	chr3R_31075001	D16-c3
2729	chr3R	31279360	31279404	chr3R	31285576	31285620	diver	26	6215	10.0	7.0	8.5	2.7	6260	chr3R	31279360	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285620	intergenic	not near genes	chr3R_26_31280001	chr3R_31280001	D16-c3
2730	chr3R	31330398	31330410	chr3R	31335638	31335649	copia	13	5239	18.5	9.5	14.0	0.9	5251	chr3R	31330398	intron	CG34347 +	chr3R	31333024	intron	CG34347 +	chr3R	31335649	intron	CG34347 +	chr3R_13_31330001	chr3R_31330001	D16-c3
2732	chr3R	31413067	31413098	chr3R	31418292	31418323	copia	16	5225	17.5	0.5	9.0	1.6	5256	chr3R	31413067	intron	Gprk2 +	chr3R	31415695	intron	Gprk2 +	chr3R	31418323	intron	Gprk2 +	chr3R_16_31415001	chr3R_31415001	D16-c3
2738	chr3R	31691511	31691561	chr3R	31696302	31696352	Doc	24	4791	8.5	7.0	7.8	2.7	4841	chr3R	31691511	intergenic	not near genes	chr3R	31693932	intergenic	not near genes	chr3R	31696352	intergenic	not near genes	chr3R_24_31690001	chr3R_31690001	D16-c3
2747	chr3R	31997977	31998022	chr3R	32005472	32005517	blood	17	7495	4.0	5.0	4.5	3.1	7540	chr3R	31997977	intron	heph -	chr3R	32001747	intron	heph -	chr3R	32005517	intron	heph -	chr3R_17_32000001	chr3R_32000001	D16-c3
2749	chr4	76473	76507	chr4	81941	81975	I-element	12	5468	10.5	5.0	7.8	1.4	5502	chr4	76473	intron	pan +	chr4	79224	intron	pan +	chr4	81975	intron	pan +	chr4_12_75001	chr4_75001	D16-c3
2751	chr4	319994	320019	chr4	328195	328220	Stalker2	4	8201	5.0	2.0	3.5	0.9	8226	chr4	319994	3` UTR	CG32850 +	chr4	324107	intron	CG32850 +	chr4	328220	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_4_320001	chr4_320001	D16-c3
2752	chr4	671584	671629	chr4	680190	680237	Tirant	22	8608	9.0	8.0	8.5	2.3	8653	chr4	671584	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680237	intron	CG11360 +	chr4_22_675001	chr4_675001	D16-c3
2755	chrX	428407	428444	chrX	434617	434651	3S18	8	6209	7.0	4.0	5.5	1.2	6244	chrX	428407	intron	CG32816 -	chrX	431529	intron	CG32816 -	chrX	434651	intron	CG32816 -	chrX_8_430001	chrX_430001	D16-c3
2756	chrX	827598	827632	chrX	835415	835449	roo	6	7817	2.0	2.0	2.0	2.0	7851	chrX	827598	intron	CG43867 -	chrX	831524	intron	CG43867 -	chrX	835449	intron	CG43867 -	chrX_6_830001	chrX_830001	D16-c3
2757	chrX	906677	906729	chrX	908491	908543	S-element	20	1813	4.0	6.0	5.0	3.3	1866	chrX	906677	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908543	intron	CG43867 -	chrX_20_905001	chrX_905001	D16-c3
2760	chrX	2308818	2308823	chrX	2317426	2317431	Tirant	8	8608	7.0	28.5	17.8	0.4	8613	chrX	2308818	intron	phl +	chrX	2313124	intron	phl +	chrX	2317431	intron	phl +	chrX_8_2310001	chrX_2310001	D16-c3
2761	chrX	2399814	2399859	chrX	2408192	2408235	roo	35	8377	12.5	14.0	13.2	2.5	8421	chrX	2399814	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408235	intergenic	not near genes	chrX_35_2400001	chrX_2400001	D16-c3
2764	chrX	2610367	2610412	chrX	2617509	2617554	HMS-Beagle	4	7142	5.0	3.5	4.2	0.8	7187	chrX	2610367	intergenic	CG8636 -	chrX	2613960	intergenic	not near genes	chrX	2617554	intergenic	Tsp3A -	chrX_4_2610001	chrX_2610001	D16-c3
2765	chrX	2664365	2664412	chrX	2665536	2665583	1360	23	1171	7.0	6.5	6.8	2.9	1218	chrX	2664365	intron	sgg +	chrX	2664974	intron	sgg +	chrX	2665583	intron	sgg +	chrX_23_2660001	chrX_2660001	D16-c3
2766	chrX	2823770	2823774	chrX	2832342	2832347	roo	5	8572	13.5	8.5	11.0	0.4	8577	chrX	2823770	intron	kirre +	chrX	2828058	intron	kirre +	chrX	2832347	intron	kirre +	chrX_5_2825001	chrX_2825001	D16-c3
2768	chrX	2844878	2844919	chrX	2852313	2852352	mdg1	12	7434	2.0	5.0	3.5	2.7	7474	chrX	2844878	intron	kirre +	chrX	2848615	intron	kirre +	chrX	2852352	intron	kirre +	chrX_12_2845001	chrX_2845001	D16-c3
2772	chrX	3058000	3058044	chrX	3058266	3058307	pogo	11	266	7.5	8.0	7.8	1.2	307	chrX	3058000	intron	kirre +	chrX	3058154	intron	kirre +	chrX	3058307	intron	kirre +	chrX_11_3055001	chrX_3055001	D16-c3
2778	chrX	3414995	3415045	chrX	3421205	3421255	3S18	12	6210	5.0	6.5	5.8	1.8	6260	chrX	3414995	intron,intron	CR44999 +,CG12535 -	chrX	3418125	intron,intron	CR44999 +,CG12535 -	chrX	3421255	intron,intron	CR44999 +,CG12535 -	chrX_12_3415001	chrX_3415001	D16-c3
2782	chrX	3493065	3493115	chrX	3502249	3502299	roo	21	9183	4.0	7.5	5.8	3.1	9234	chrX	3493065	intron,intron	CR44999 +,Gas8 -	chrX	3497682	intron,intron	CR44999 +,Gas8 -	chrX	3502299	intron,intron	CR44999 +,Gas8 -	chrX_21_3495001	chrX_3495001	D16-c3
2785	chrX	3597531	3597582	chrX	3619724	3619755	roo	22	22192	5.0	3.5	4.2	4.2	22224	chrX	3597531	intron	AstA-R1 +	chrX	3608643	intron	AstA-R1 +	chrX	3619755	intron	AstA-R1 +	chrX_22_3605001	chrX_3605001	D16-c3
2789	chrX	3726742	3726778	chrX	3730164	3730199	NOF	12	3422	5.5	0.0	2.8	3.2	3457	chrX	3726742	intron	tlk +	chrX	3728470	intron	tlk +	chrX	3730199	intron	tlk +	chrX_12_3725001	chrX_3725001	D16-c3
2793	chrX	3842327	3842353	chrX	3842570	3842596	pogo	15	243	4.5	6.5	5.5	2.3	269	chrX	3842327	intron	ec +	chrX	3842462	intron	ec +	chrX	3842596	intron	ec +	chrX_15_3840001	chrX_3840001	D16-c3
2801	chrX	3986841	3986891	chrX	3994499	3994549	412	15	7658	2.5	5.5	4.0	3.0	7708	chrX	3986841	intergenic	not near genes	chrX	3990695	intergenic	not near genes	chrX	3994549	intergenic	not near genes	chrX_15_3990001	chrX_3990001	D16-c3
2807	chrX	4157872	4157917	chrX	4164950	4164992	297	20	7077	6.0	4.5	5.2	3.2	7120	chrX	4157872	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4164992	intron	Fas2 -	chrX_20_4160001	chrX_4160001	D16-c3
2820	chrX	4792362	4792402	chrX	4792820	4792858	jockey	15	457	6.5	8.0	7.2	1.8	496	chrX	4792362	intergenic	not near genes	chrX	4792610	intergenic	not near genes	chrX	4792858	intergenic	not near genes	chrX_15_4790001	chrX_4790001	D16-c3
2821	chrX	4827952	4827998	chrX	4835348	4835394	Stalker4	26	7392	5.5	8.0	6.8	3.3	7442	chrX	4827952	intergenic	not near genes	chrX	4831673	intergenic	not near genes	chrX	4835394	intergenic	not near genes	chrX_26_4830001	chrX_4830001	D16-c3
2826	chrX	4990019	4990077	chrX	4997258	4997313	roo	11	7238	2.0	4.5	3.2	2.6	7294	chrX	4990019	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997313	intron	CR44833 -	chrX_11_4990001	chrX_4990001	D16-c3
2828	chrX	5096254	5096305	chrX	5103844	5103895	springer	15	7590	11.0	11.0	11.0	1.2	7641	chrX	5096254	intron,intron	CG15465 +,rg +	chrX	5100074	intron,intron	CG15465 +,rg +	chrX	5103895	intron,intron	CG15465 +,rg +	chrX_15_5100001	chrX_5100001	D16-c3
2831	chrX	5338682	5338729	chrX	5339960	5340007	jockey	21	1278	7.0	8.0	7.5	2.5	1325	chrX	5338682	intergenic	not near genes	chrX	5339344	intergenic	not near genes	chrX	5340007	intergenic	SK +	chrX_21_5335001	chrX_5335001	D16-c3
2835	chrX	5481064	5481091	chrX	5485057	5485082	I-element	8	3992	3.5	12.0	7.8	0.9	4018	chrX	5481064	intron	SPR +	chrX	5483073	intron	SPR +	chrX	5485082	intron	SPR +	chrX_8_5480001	chrX_5480001	D16-c3
2838	chrX	5524819	5524851	chrX	5528703	5528739	412	10	3885	10.0	6.0	8.0	1.1	3920	chrX	5524819	intergenic	snoRNA:Psi28S-3342 -	chrX	5526779	intergenic	not near genes	chrX	5528739	intergenic	Vsx2 -	chrX_10_5525001	chrX_5525001	D16-c3
2840	chrX	5727398	5727415	chrX	5732162	5732179	Doc	5	4764	9.0	2.0	5.5	0.8	4781	chrX	5727398	intron	CG32758 -	chrX	5729788	intron	CG32758 -	chrX	5732179	intron	CG32758 -	chrX_5_5725001	chrX_5725001	D16-c3
2841	chrX	6335215	6335242	chrX	6337750	6337776	Tirant	12	2534	1.0	7.0	4.0	2.4	2561	chrX	6335215	intergenic	not near genes	chrX	6336496	intergenic	not near genes	chrX	6337776	5` UTR	CG3842 +	chrX_12_6335001	chrX_6335001	D16-c3
2844	chrX	6429981	6429993	chrX	6435479	6435488	Rt1c	7	5496	14.5	20.0	17.2	0.4	5507	chrX	6429981	intron	CG42340 -	chrX	6432734	intron	CG42340 -	chrX	6435488	intron	CG42340 -	chrX_7_6430001	chrX_6430001	D16-c3
2846	chrX	6562799	6562845	chrX	6571306	6571352	Tirant	30	8507	10.0	11.0	10.5	2.6	8553	chrX	6562799	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571352	intron	CG34417 +	chrX_30_6565001	chrX_6565001	D16-c3
2849	chrX	6605458	6605502	chrX	6608505	6608549	Burdock	16	3047	3.5	7.0	5.2	2.6	3091	chrX	6605458	intron	pigs +	chrX	6607004	intron	pigs +	chrX	6608549	intron	pigs +	chrX_16_6605001	chrX_6605001	D16-c3
2861	chrX	7023581	7023628	chrX	7030996	7031039	Tabor	20	7414	8.5	5.5	7.0	2.5	7458	chrX	7023581	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031039	intron	CG12541 -	chrX_20_7025001	chrX_7025001	D16-c3
2862	chrX	7125224	7125275	chrX	7134408	7134450	roo	23	9183	1.0	5.0	3.0	5.8	9226	chrX	7125224	intergenic	not near genes	chrX	7129837	intergenic	not near genes	chrX	7134450	intergenic	not near genes	chrX_23_7125001	chrX_7125001	D16-c3
2873	chrX	8031406	8031453	chrX	8035740	8035787	Juan	20	4334	7.5	11.5	9.5	1.9	4381	chrX	8031406	intergenic	not near genes	chrX	8033596	intergenic	not near genes	chrX	8035787	3` UTR	CG2233 -	chrX_20_8030001	chrX_8030001	D16-c3
2875	chrX	8364830	8364873	chrX	8365252	8365312	BS	13	435	4.5	0.0	2.2	4.1	482	chrX	8364830	intron	nAChRalpha3 -	chrX	8365071	intron	nAChRalpha3 -	chrX	8365312	intron	nAChRalpha3 -	chrX_13_8365001	chrX_8365001	D16-c3
2881	chrX	8922305	8922355	chrX	8922764	8922814	jockey	18	458	9.0	7.0	8.0	2.0	509	chrX	8922305	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922814	intron	rdgA +	chrX_18_8920001	chrX_8920001	D16-c3
2882	chrX	8927571	8927605	chrX	8929866	8929900	NOF	9	2295	3.5	4.0	3.8	1.9	2329	chrX	8927571	intron	rdgA +	chrX	8928736	intron	rdgA +	chrX	8929900	intron	rdgA +	chrX_9_8925001	chrX_8925001	D16-c3
2883	chrX	8948741	8948788	chrX	8956276	8956322	roo	6	7534	3.5	3.0	3.2	1.4	7581	chrX	8948741	intron	rdgA +	chrX	8952532	intron	rdgA +	chrX	8956322	intron	rdgA +	chrX_6_8950001	chrX_8950001	D16-c3
2890	chrX	9508114	9508159	chrX	9509657	9509702	jockey	21	1543	9.0	10.0	9.5	2.0	1588	chrX	9508114	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509702	intron	CG32700 -	chrX_21_9505001	chrX_9505001	D16-c3
2893	chrX	9575766	9575821	chrX	9576115	9576170	mdg3	32	348	11.5	10.5	11.0	2.7	404	chrX	9575766	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576170	intron,5` UTR	CG32699 -,CG42395 -	chrX_32_9575001	chrX_9575001	D16-c3
2901	chrX	10138193	10138238	chrX	10145722	10145767	412	7	7529	5.0	2.0	3.5	1.6	7574	chrX	10138193	intron,intron	RhoU +,CR44894 -	chrX	10141980	intron,intron	RhoU +,CR44894 -	chrX	10145767	intron,intron	RhoU +,CR44894 -	chrX_7_10140001	chrX_10140001	D16-c3
2915	chrX	10267297	10267332	chrX	10276469	10276507	roo	6	9174	0.0	3.5	1.8	2.1	9210	chrX	10267297	3` UTR	alpha-Man-I -	chrX	10271902	intron	alpha-Man-I -	chrX	10276507	3` UTR	alpha-Man-I -	chrX_6_10270001	chrX_10270001	D16-c3
2919	chrX	10348779	10348825	chrX	10356368	10356401	springer	17	7588	8.5	5.5	7.0	2.1	7622	chrX	10348779	intergenic	snoRNA:U3:9B +	chrX	10352590	intergenic	not near genes	chrX	10356401	intergenic	l(1)G0289 -	chrX_17_10350001	chrX_10350001	D16-c3
2921	chrX	10550831	10550883	chrX	10552323	10552375	hobo	17	1492	6.5	7.5	7.0	2.1	1544	chrX	10550831	intron	spri -	chrX	10551603	intron	spri -	chrX	10552375	intron	spri -	chrX_17_10550001	chrX_10550001	D16-c3
2923	chrX	10686027	10686079	chrX	10691189	10691241	roo	19	5162	6.5	11.0	8.8	1.9	5214	chrX	10686027	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691241	intron	X11Lbeta +	chrX_19_10685001	chrX_10685001	D16-c3
2927	chrX	10772649	10772698	chrX	10772757	10772801	Tirant	39	106	8.0	9.5	8.8	4.0	152	chrX	10772649	intron	CG15211 +	chrX	10772725	intron	CG15211 +	chrX	10772801	intron	CG15211 +	chrX_39_10770001	chrX_10770001	D16-c3
2934	chrX	11095974	11096021	chrX	11103101	11103148	HMS-Beagle	16	7127	2.5	6.5	4.5	2.9	7174	chrX	11095974	intergenic	not near genes	chrX	11099561	intergenic	not near genes	chrX	11103148	intron	CG42249 +	chrX_16_11095001	chrX_11095001	D16-c3
2936	chrX	11184231	11184280	chrX	11189335	11189381	flea	13	5103	4.5	5.0	4.8	2.2	5150	chrX	11184231	intergenic	not near genes	chrX	11186806	intergenic	not near genes	chrX	11189381	intergenic	not near genes	chrX_13_11185001	chrX_11185001	D16-c3
2938	chrX	11194452	11194456	chrX	11201898	11201902	gypsy5	6	7446	5.5	10.0	7.8	0.7	7450	chrX	11194452	intergenic	not near genes	chrX	11198177	intergenic	not near genes	chrX	11201902	intergenic	CG11106 +	chrX_6_11195001	chrX_11195001	D16-c3
2941	chrX	11268536	11268594	chrX	11270054	11270112	hopper2	36	1517	3.0	8.0	5.5	5.5	1576	chrX	11268536	intron	CG44422 -	chrX	11269324	intron	CG44422 -	chrX	11270112	intron	CG44422 -	chrX_36_11265001	chrX_11265001	D16-c3
2943	chrX	11312038	11312087	chrX	11319415	11319465	Stalker2	23	7378	6.0	4.0	5.0	3.8	7427	chrX	11312038	intergenic	not near genes	chrX	11315752	intergenic	not near genes	chrX	11319465	intergenic	not near genes	chrX_23_11315001	chrX_11315001	D16-c3
2949	chrX	11535022	11535042	chrX	11541517	11541537	Burdock	8	6495	14.5	5.0	9.8	0.7	6515	chrX	11535022	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541537	intron	Drak +	chrX_8_11535001	chrX_11535001	D16-c3
2950	chrX	11633391	11633432	chrX	11640470	11640509	297	20	7079	8.0	7.5	7.8	2.3	7118	chrX	11633391	intron	Ptp10D +	chrX	11636950	intron	Ptp10D +	chrX	11640509	intron	Ptp10D +	chrX_20_11635001	chrX_11635001	D16-c3
2951	chrX	11645089	11645111	chrX	11648283	11648305	NOF	6	3194	6.0	1.5	3.8	1.2	3216	chrX	11645089	intron	Ptp10D +	chrX	11646697	intron	Ptp10D +	chrX	11648305	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	D16-c3
2957	chrX	12168117	12168154	chrX	12173584	12173620	I-element	13	5467	4.5	10.5	7.5	1.5	5503	chrX	12168117	intron	Ten-a +	chrX	12170868	intron	Ten-a +	chrX	12173620	intron	Ten-a +	chrX_13_12170001	chrX_12170001	D16-c3
2966	chrX	12381865	12381901	chrX	12385792	12385814	flea	11	3925	6.0	8.0	7.0	1.4	3949	chrX	12381865	intergenic	not near genes	chrX	12383840	intergenic	not near genes	chrX	12385814	intergenic	not near genes	chrX_11_12380001	chrX_12380001	D16-c3
2985	chrX	13401460	13401515	chrX	13401837	13401892	jockey	5	376	1.5	2.0	1.8	1.8	432	chrX	13401460	intergenic	CG1673 +,CG12725 -	chrX	13401676	intergenic	CG12725 -,CG1673 +	chrX	13401892	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	D16-c3
2986	chrX	13429442	13429480	chrX	13430616	13430652	jockey	7	1174	4.0	2.5	3.2	1.7	1210	chrX	13429442	intergenic	not near genes	chrX	13430047	intergenic	not near genes	chrX	13430652	intergenic	not near genes	chrX_7_13430001	chrX_13430001	D16-c3
2988	chrX	13463646	13463670	chrX	13469247	13469269	mdg3	5	5601	1.5	4.0	2.8	1.3	5623	chrX	13463646	intron	Neto +	chrX	13466458	intron	Neto +	chrX	13469269	intron	Neto +	chrX_5_13465001	chrX_13465001	D16-c3
2997	chrX	13937952	13937998	chrX	13941248	13941294	I-element	6	3296	2.5	4.0	3.2	1.4	3342	chrX	13937952	intron	mamo -	chrX	13939623	intron	mamo -	chrX	13941294	intron	mamo -	chrX_6_13935001	chrX_13935001	D16-c3
2998	chrX	14104998	14105046	chrX	14114174	14114222	roo	13	9175	4.0	5.5	4.8	2.2	9224	chrX	14104998	intergenic	not near genes	chrX	14109610	intergenic	not near genes	chrX	14114222	5` UTR	CR44657 +	chrX_13_14105001	chrX_14105001	D16-c3
3000	chrX	14155551	14155591	chrX	14164883	14164923	297	10	9332	10.0	2.0	6.0	1.4	9372	chrX	14155551	intergenic	not near genes	chrX	14160237	intergenic	not near genes	chrX	14164923	intergenic	not near genes	chrX_10_14160001	chrX_14160001	D16-c3
3008	chrX	14636448	14636468	chrX	14641912	14641934	I-element	8	5465	3.0	5.5	4.2	1.5	5486	chrX	14636448	intron	NetA -	chrX	14639191	intron	NetA -	chrX	14641934	intron	NetA -	chrX_8_14635001	chrX_14635001	D16-c3
3010	chrX	14778013	14778048	chrX	14782835	14782870	Doc	10	4821	3.0	7.0	5.0	1.7	4857	chrX	14778013	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782870	intergenic	Ag5r2 -	chrX_10_14780001	chrX_14780001	D16-c3
3011	chrX	14818739	14818794	chrX	14823968	14824017	copia	17	5226	2.5	1.5	2.0	5.7	5278	chrX	14818739	intron	rut -	chrX	14821378	intron	rut -	chrX	14824017	intron	rut -	chrX_17_14820001	chrX_14820001	D16-c3
3012	chrX	14936850	14936889	chrX	14946132	14946171	roo	8	9282	2.5	2.5	2.5	2.3	9321	chrX	14936850	intron	pdgy -	chrX	14941510	intron	pdgy -	chrX	14946171	intron	pdgy -	chrX_8_14940001	chrX_14940001	D16-c3
3018	chrX	15273685	15273731	chrX	15274875	15274920	1360	19	1191	5.0	9.5	7.2	2.3	1235	chrX	15273685	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274920	intergenic	not near genes	chrX_19_15270001	chrX_15270001	D16-c3
3021	chrX	15413031	15413077	chrX	15417358	15417404	Juan	19	4326	9.5	5.0	7.2	2.3	4373	chrX	15413031	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417404	intron	Cngl -	chrX_19_15415001	chrX_15415001	D16-c3
3035	chrX	16222755	16222803	chrX	16231130	16231178	roo	11	8375	1.0	2.5	1.8	3.9	8423	chrX	16222755	intergenic	not near genes	chrX	16226966	intergenic	not near genes	chrX	16231178	intergenic	not near genes	chrX_11_16225001	chrX_16225001	D16-c3
3036	chrX	16245928	16245952	chrX	16246060	16246084	INE-1	6	132	2.5	2.0	2.2	1.9	156	chrX	16245928	intergenic	not near genes	chrX	16246006	intergenic	not near genes	chrX	16246084	intergenic	not near genes	chrX_6_16245001	chrX_16245001	D16-c3
3040	chrX	16340644	16340696	chrX	16349824	16349878	roo	7	9180	0.0	1.5	0.8	3.9	9234	chrX	16340644	intergenic	Dsp1 +	chrX	16345261	intergenic	not near genes	chrX	16349878	intergenic	sl +	chrX_7_16345001	chrX_16345001	D16-c3
3042	chrX	16492630	16492675	chrX	16498232	16498277	mdg3	20	5600	6.0	8.5	7.2	2.4	5647	chrX	16492630	intron	para -	chrX	16495454	intron	para -	chrX	16498277	exon	para -	chrX_20_16495001	chrX_16495001	D16-c3
3050	chrX	16936006	16936028	chrX	16936449	16936471	jockey	5	443	3.5	8.5	6.0	0.7	465	chrX	16936006	intron	CG4928 +	chrX	16936238	intron	CG4928 +	chrX	16936471	intron	CG4928 +	chrX_5_16935001	chrX_16935001	D16-c3
3053	chrX	17057919	17057963	chrX	17058185	17058229	pogo	10	266	2.0	4.0	3.0	2.5	310	chrX	17057919	intron	CG45002 -	chrX	17058074	intron	CG45002 -	chrX	17058229	intron	CG45002 -	chrX_10_17055001	chrX_17055001	D16-c3
3056	chrX	17195194	17195221	chrX	17200303	17200329	flea	6	5108	5.5	6.5	6.0	0.9	5135	chrX	17195194	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200329	3` UTR	baz +	chrX_6_17195001	chrX_17195001	D16-c3
3067	chrX	17431329	17431341	chrX	17431695	17431707	jockey	12	366	23.0	8.0	15.5	0.7	378	chrX	17431329	intron	CG12994 -	chrX	17431518	intron	CG12994 -	chrX	17431707	intron	CG12994 -	chrX_12_17430001	chrX_17430001	D16-c3
3073	chrX	17556924	17556934	chrX	17557448	17557455	mdg1	5	523	22.0	7.5	14.8	0.3	531	chrX	17556924	intron	CG43658 -	chrX	17557190	intron	CG43658 -	chrX	17557455	intron	CG43658 -	chrX_5_17555001	chrX_17555001	D16-c3
3080	chrX	17792937	17792977	chrX	17796260	17796300	flea	12	3322	7.5	5.5	6.5	1.6	3363	chrX	17792937	intron	OdsH +	chrX	17794618	intron	OdsH +	chrX	17796300	intron	OdsH +	chrX_12_17790001	chrX_17790001	D16-c3
3085	chrX	18194046	18194100	chrX	18194606	18194660	BS	21	560	4.5	6.5	5.5	3.2	614	chrX	18194046	intron	Frq2 +	chrX	18194353	intron	Frq2 +	chrX	18194660	intron	Frq2 +	chrX_21_18190001	chrX_18190001	D16-c3
3091	chrX	18429472	18429513	chrX	18434808	18434849	Transpac	19	5336	4.0	9.0	6.5	2.5	5377	chrX	18429472	intergenic	not near genes	chrX	18432160	intergenic	not near genes	chrX	18434849	intergenic	not near genes	chrX_19_18430001	chrX_18430001	D16-c3
3102	chrX	18754311	18754320	chrX	18758005	18758011	297	6	3692	5.5	7.5	6.5	0.8	3700	chrX	18754311	intergenic	not near genes	chrX	18756161	intergenic	not near genes	chrX	18758011	intergenic	not near genes	chrX_6_18755001	chrX_18755001	D16-c3
3103	chrX	18754322	18754345	chrX	18758000	18758037	297	14	3691	4.0	7.0	5.5	2.2	3715	chrX	18754322	intergenic	not near genes	chrX	18756180	intergenic	not near genes	chrX	18758037	intergenic	not near genes	chrX_14_18755001	chrX_18755001	D16-c3
3109	chrX	19060388	19060421	chrX	19065197	19065230	Doc	12	4809	8.5	8.5	8.5	1.3	4842	chrX	19060388	intron	CG14190 +	chrX	19062809	intron	CG14190 +	chrX	19065230	intron	CG14190 +	chrX_12_19060001	chrX_19060001	D16-c3
3119	chrX	19136527	19136584	chrX	19143472	19143524	412	30	6943	4.5	1.5	3.0	7.5	6997	chrX	19136527	intergenic	not near genes	chrX	19140026	intergenic	not near genes	chrX	19143524	3` UTR	RhoGAP18B -	chrX_30_19140001	chrX_19140001	D16-c3
3126	chrX	19356975	19357023	chrX	19358441	19358507	NOF	12	1469	3.0	0.5	1.8	4.3	1532	chrX	19356975	intron	kek5 +	chrX	19357741	intron	kek5 +	chrX	19358507	intron	kek5 +	chrX_12_19355001	chrX_19355001	D16-c3
3127	chrX	19380135	19380184	chrX	19380401	19380450	pogo	10	266	4.0	6.5	5.2	1.6	315	chrX	19380135	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380450	intron	kek5 +	chrX_10_19380001	chrX_19380001	D16-c3
3130	chrX	19472102	19472142	chrX	19472697	19472737	jockey	7	594	3.0	2.0	2.5	2.0	635	chrX	19472102	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472737	intergenic	not near genes	chrX_7_19470001	chrX_19470001	D16-c3
3132	chrX	19710048	19710101	chrX	19711859	19711912	S-element	21	1811	6.0	4.5	5.2	3.4	1864	chrX	19710048	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711912	intron	meso18E -	chrX_21_19710001	chrX_19710001	D16-c3
3134	chrX	19797323	19797339	chrX	19804661	19804676	Stalker4	5	7338	5.0	1.0	3.0	1.2	7353	chrX	19797323	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804676	intergenic	not near genes	chrX_5_19800001	chrX_19800001	D16-c3
3153	chrX	20377327	20377344	chrX	20378819	20378835	hobo	8	1492	4.0	32.0	18.0	0.4	1508	chrX	20377327	intergenic	not near genes	chrX	20378081	intergenic	not near genes	chrX	20378835	intergenic	not near genes	chrX_8_20375001	chrX_20375001	D16-c3
3158	chrX	20504110	20504155	chrX	20505656	20505701	transib2	29	1546	10.0	14.5	12.2	2.2	1591	chrX	20504110	intron	RhoGAP19D -	chrX	20504906	intron	RhoGAP19D -	chrX	20505701	intron	RhoGAP19D -	chrX_29_20500001	chrX_20500001	D16-c3
3171	chrX	20836710	20836757	chrX	20844335	20844384	roo	9	7626	3.0	3.5	3.2	2.1	7674	chrX	20836710	intron	shakB -	chrX	20840547	intron	shakB -	chrX	20844384	intron	shakB -	chrX_9_20840001	chrX_20840001	D16-c3
3173	chrX	20940701	20940737	chrX	20942195	20942231	hobo	10	1493	7.5	6.5	7.0	1.2	1530	chrX	20940701	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942231	intergenic	not near genes	chrX_10_20940001	chrX_20940001	D16-c3
3174	chrX	20956946	20957010	chrX	20962416	20962477	I-element	6	5469	0.0	1.5	0.8	3.3	5531	chrX	20956946	intergenic	not near genes	chrX	20959712	intergenic	not near genes	chrX	20962477	intergenic	Ser6 -	chrX_6_20955001	chrX_20955001	D16-c3
3177	chrX	21061853	21061887	chrX	21062364	21062398	roo	5	511	2.5	2.0	2.2	1.6	545	chrX	21061853	intron	bves +	chrX	21062126	intron	bves +	chrX	21062398	intron,3` UTR	bves +,CG32512 -	chrX_5_21060001	chrX_21060001	D16-c3
3179	chrX	21086111	21086160	chrX	21087165	21087214	jockey	9	1054	2.5	6.0	4.2	1.7	1103	chrX	21086111	intergenic	not near genes	chrX	21086662	intergenic	not near genes	chrX	21087214	intergenic	not near genes	chrX_9_21085001	chrX_21085001	D16-c3
3198	chrX	21458692	21458710	chrX	21464151	21464171	Ivk	5	5461	3.0	8.0	5.5	0.8	5479	chrX	21458692	intergenic	not near genes	chrX	21461432	intergenic	not near genes	chrX	21464171	intergenic	not near genes	chrX_5_21460001	chrX_21460001	D16-c3
3199	chrX	21474392	21474434	chrX	21474778	21474825	1731	21	391	3.0	4.0	3.5	4.7	433	chrX	21474392	intergenic	not near genes	chrX	21474608	intergenic	not near genes	chrX	21474825	intergenic	not near genes	chrX_21_21470001	chrX_21470001	D16-c3
3203	chrX	22522605	22522650	chrX	22525450	22525495	NOF	13	2845	4.5	2.5	3.5	2.9	2890	chrX	22522605	intron	CG17600 +	chrX	22524050	intron	CG17600 +	chrX	22525495	intron	CG17600 +	chrX_13_22520001	chrX_22520001	D16-c3
3207	chrX	22697481	22697514	chrX	22701803	22701836	Juan	18	4322	7.5	7.0	7.2	2.2	4355	chrX	22697481	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701836	intron	CR44997 +	chrX_18_22695001	chrX_22695001	D16-c3
3208	chrX	22771483	22771538	chrX	22774799	22774850	297	18	3315	4.5	3.5	4.0	3.6	3367	chrX	22771483	intron	CR44997 +	chrX	22773166	intron	CR44997 +	chrX	22774850	intron	CR44997 +	chrX_18_22770001	chrX_22770001	D16-c3
3211	chrX	22811975	22812005	chrX	22816772	22816802	F-element	14	4797	7.5	5.5	6.5	1.9	4827	chrX	22811975	intergenic	CG12446 -	chrX	22814388	intergenic	not near genes	chrX	22816802	intergenic	not near genes	chrX_14_22810001	chrX_22810001	D16-c3
3217	chrX	22987089	22987130	chrX	22989773	22989814	Burdock	12	2684	2.5	3.5	3.0	3.0	2725	chrX	22987089	intron,intron	stnA -,stnB -	chrX	22988452	intron,intron	stnA -,stnB -	chrX	22989814	intron,intron	stnA -,stnB -	chrX_12_22985001	chrX_22985001	D16-c3
3219	chrX	22996306	22996333	chrX	23003563	23003590	roo	8	7256	5.5	5.5	5.5	1.2	7284	chrX	22996306	intron,intron	stnA -,stnB -	chrX	22999948	intron,intron	stnA -,stnB -	chrX	23003590	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	D16-c3
3220	chrX	22967489	22967509	chrX	23154541	23154559	diver	5	187051	1.0	10.0	5.5	0.8	187070	chrX	22967489	intergenic	not near genes	chrX	23061024	intergenic	not near genes	chrX	23154559	intergenic	not near genes	chrX_5_23060001	chrX_23060001	D16-c3
3221	chrY	424979	424999	chrY	685035	685055	Rt1c	4	260056	0.0	0.0	0.0	4.0	260076	chrY	424979	intergenic	not near genes	chrY	555017	intron	kl-3 +	chrY	685055	intergenic	not near genes	chrY_4_555001	chrY_555001	D16-c3